Query 023442
Match_columns 282
No_of_seqs 253 out of 2106
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0042 tRNA-dihydrouridine sy 100.0 1E-49 2.2E-54 371.4 23.5 221 2-239 98-320 (323)
2 TIGR00742 yjbN tRNA dihydrouri 100.0 4E-49 8.7E-54 366.6 23.3 232 2-241 86-317 (318)
3 PRK10415 tRNA-dihydrouridine s 100.0 1.6E-45 3.5E-50 343.4 23.9 222 2-239 96-319 (321)
4 PF01207 Dus: Dihydrouridine s 100.0 7.6E-47 1.6E-51 350.6 14.6 217 2-234 85-302 (309)
5 PRK11815 tRNA-dihydrouridine s 100.0 5.1E-45 1.1E-49 341.6 23.5 236 2-246 96-332 (333)
6 PRK10550 tRNA-dihydrouridine s 100.0 7.6E-45 1.7E-49 337.3 22.5 212 2-234 94-308 (312)
7 KOG2335 tRNA-dihydrouridine sy 100.0 1.6E-42 3.4E-47 319.2 20.1 245 2-273 104-357 (358)
8 TIGR00737 nifR3_yhdG putative 100.0 4.3E-39 9.4E-44 299.9 24.1 221 2-238 94-316 (319)
9 KOG2333 Uncharacterized conser 100.0 2.6E-35 5.7E-40 277.8 16.4 188 2-207 352-545 (614)
10 TIGR00736 nifR3_rel_arch TIM-b 100.0 1.9E-30 4.1E-35 230.8 13.9 129 2-148 98-226 (231)
11 cd02911 arch_FMN Archeal FMN-b 100.0 1.5E-29 3.3E-34 226.1 13.7 129 2-156 103-231 (233)
12 cd02801 DUS_like_FMN Dihydrour 99.9 1.1E-26 2.3E-31 206.1 15.0 140 2-156 86-226 (231)
13 TIGR01037 pyrD_sub1_fam dihydr 99.9 1.9E-23 4.1E-28 193.0 13.7 135 2-152 124-273 (300)
14 cd02940 DHPD_FMN Dihydropyrimi 99.9 1.5E-23 3.4E-28 193.8 12.5 141 2-156 132-295 (299)
15 KOG2334 tRNA-dihydrouridine sy 99.9 2.6E-22 5.6E-27 187.8 17.7 215 2-243 112-331 (477)
16 PRK08318 dihydropyrimidine deh 99.9 1.9E-22 4.2E-27 194.5 12.7 141 2-156 132-296 (420)
17 cd04741 DHOD_1A_like Dihydroor 99.9 1.9E-21 4.2E-26 179.5 13.7 144 2-157 125-287 (294)
18 cd04734 OYE_like_3_FMN Old yel 99.9 2.4E-21 5.2E-26 182.4 13.4 153 2-157 160-329 (343)
19 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 6.3E-21 1.4E-25 175.0 13.2 143 2-156 130-286 (289)
20 PRK07259 dihydroorotate dehydr 99.8 2E-20 4.3E-25 173.0 15.3 135 2-152 124-273 (301)
21 cd04740 DHOD_1B_like Dihydroor 99.8 4E-20 8.6E-25 170.5 15.2 135 2-152 121-270 (296)
22 cd04738 DHOD_2_like Dihydrooro 99.8 4.4E-20 9.6E-25 172.8 12.0 139 2-156 166-323 (327)
23 PRK05286 dihydroorotate dehydr 99.8 4E-20 8.7E-25 174.2 10.3 139 2-156 175-332 (344)
24 PRK13523 NADPH dehydrogenase N 99.8 4.1E-19 8.8E-24 166.9 12.7 149 2-159 161-321 (337)
25 cd04733 OYE_like_2_FMN Old yel 99.8 1E-18 2.2E-23 164.2 13.7 145 2-152 168-332 (338)
26 cd02931 ER_like_FMN Enoate red 99.8 9.6E-18 2.1E-22 160.1 14.7 140 13-157 189-349 (382)
27 cd04735 OYE_like_4_FMN Old yel 99.8 3.5E-18 7.6E-23 161.6 11.5 144 5-157 175-327 (353)
28 cd02933 OYE_like_FMN Old yello 99.8 1.6E-17 3.5E-22 156.2 14.8 139 2-156 171-327 (338)
29 cd02803 OYE_like_FMN_family Ol 99.8 1.7E-17 3.7E-22 154.7 14.7 144 6-152 173-321 (327)
30 cd02930 DCR_FMN 2,4-dienoyl-Co 99.7 1.9E-17 4.1E-22 156.5 12.7 147 6-157 169-320 (353)
31 cd02932 OYE_YqiM_FMN Old yello 99.7 2.8E-17 6E-22 154.4 12.9 143 2-152 173-330 (336)
32 cd04739 DHOD_like Dihydroorota 99.7 6E-17 1.3E-21 151.6 14.2 134 2-152 131-277 (325)
33 cd02929 TMADH_HD_FMN Trimethyl 99.7 3.2E-17 7E-22 155.9 12.6 147 2-157 169-333 (370)
34 PRK08255 salicylyl-CoA 5-hydro 99.7 5.9E-17 1.3E-21 167.0 15.0 149 2-158 570-733 (765)
35 PRK14024 phosphoribosyl isomer 99.7 6.2E-17 1.3E-21 145.5 11.7 130 2-151 94-231 (241)
36 PRK07565 dihydroorotate dehydr 99.7 2.2E-16 4.8E-21 148.2 14.1 134 2-152 133-279 (334)
37 cd04747 OYE_like_5_FMN Old yel 99.7 2.3E-16 5E-21 149.4 12.9 143 2-157 163-342 (361)
38 PLN02495 oxidoreductase, actin 99.6 3.7E-15 7.9E-20 141.9 13.1 142 2-152 146-310 (385)
39 COG0167 PyrD Dihydroorotate de 99.6 6.4E-15 1.4E-19 136.1 12.8 135 2-152 129-281 (310)
40 cd02809 alpha_hydroxyacid_oxid 99.6 1.8E-14 3.9E-19 133.3 12.4 143 2-190 148-291 (299)
41 PRK04180 pyridoxal biosynthesi 99.6 2E-14 4.3E-19 130.5 10.4 142 1-150 42-242 (293)
42 PRK02506 dihydroorotate dehydr 99.5 7.7E-14 1.7E-18 129.8 13.0 140 2-152 125-281 (310)
43 TIGR01036 pyrD_sub2 dihydrooro 99.5 4.9E-14 1.1E-18 132.5 9.9 139 2-156 172-331 (335)
44 PRK00748 1-(5-phosphoribosyl)- 99.5 1.4E-13 3.1E-18 122.4 11.0 126 2-149 93-227 (233)
45 COG1902 NemA NADH:flavin oxido 99.5 3.1E-13 6.8E-18 128.0 13.8 138 13-156 187-331 (363)
46 PF01180 DHO_dh: Dihydroorotat 99.4 3.7E-13 8E-18 124.3 9.0 141 2-157 130-288 (295)
47 TIGR00007 phosphoribosylformim 99.4 1.7E-12 3.7E-17 115.4 12.3 127 2-149 91-225 (230)
48 cd04732 HisA HisA. Phosphorib 99.4 9.2E-13 2E-17 117.1 10.4 129 2-151 92-228 (234)
49 cd04731 HisF The cyclase subun 99.4 1.5E-12 3.2E-17 116.8 11.7 120 17-149 99-230 (243)
50 PRK01033 imidazole glycerol ph 99.4 1.1E-12 2.5E-17 119.0 10.9 124 2-148 93-232 (258)
51 PRK02083 imidazole glycerol ph 99.4 2.3E-12 5E-17 116.4 11.5 125 2-148 93-233 (253)
52 PRK13585 1-(5-phosphoribosyl)- 99.4 5.4E-12 1.2E-16 112.9 12.9 133 2-156 95-235 (241)
53 PRK10605 N-ethylmaleimide redu 99.4 4.5E-12 9.7E-17 120.4 13.0 130 13-156 197-334 (362)
54 PLN02826 dihydroorotate dehydr 99.4 7.9E-12 1.7E-16 120.2 14.5 136 2-152 222-381 (409)
55 TIGR01304 IMP_DH_rel_2 IMP deh 99.4 7E-12 1.5E-16 119.0 12.4 106 23-147 116-221 (369)
56 TIGR03572 WbuZ glycosyl amidat 99.4 7.9E-12 1.7E-16 111.4 11.9 124 3-145 94-230 (232)
57 PF00724 Oxidored_FMN: NADH:fl 99.4 9.5E-13 2E-17 124.0 6.3 139 12-156 186-334 (341)
58 TIGR02151 IPP_isom_2 isopenten 99.3 4.3E-11 9.3E-16 112.5 12.7 129 2-148 147-289 (333)
59 PLN02411 12-oxophytodienoate r 99.3 4.5E-11 9.8E-16 114.6 12.8 138 12-152 202-352 (391)
60 TIGR00735 hisF imidazoleglycer 99.2 7.9E-11 1.7E-15 106.6 11.7 128 2-148 93-235 (254)
61 PRK08649 inosine 5-monophospha 99.2 1.4E-10 3E-15 110.2 12.4 104 23-145 115-218 (368)
62 COG0106 HisA Phosphoribosylfor 99.2 2.1E-10 4.6E-15 102.1 12.0 128 2-151 94-230 (241)
63 PRK05437 isopentenyl pyrophosp 99.2 4.4E-10 9.5E-15 106.5 14.8 130 2-148 154-296 (352)
64 TIGR02708 L_lactate_ox L-lacta 99.1 3.4E-10 7.4E-15 107.3 11.2 100 27-147 215-317 (367)
65 cd02811 IDI-2_FMN Isopentenyl- 99.1 1.5E-09 3.2E-14 101.9 14.7 113 24-147 162-289 (326)
66 cd04737 LOX_like_FMN L-Lactate 99.1 2.5E-10 5.3E-15 107.9 9.4 103 26-149 207-312 (351)
67 PRK02083 imidazole glycerol ph 99.0 2.3E-09 5E-14 96.9 9.6 83 65-158 36-118 (253)
68 cd04731 HisF The cyclase subun 98.9 5.2E-09 1.1E-13 93.9 9.5 84 64-158 32-115 (243)
69 PF00977 His_biosynth: Histidi 98.9 6.2E-09 1.4E-13 93.0 9.3 124 2-148 92-226 (229)
70 PRK13587 1-(5-phosphoribosyl)- 98.9 3.2E-08 7E-13 88.7 12.6 122 2-147 95-226 (234)
71 cd04722 TIM_phosphate_binding 98.8 5.6E-08 1.2E-12 82.2 12.4 102 25-143 98-200 (200)
72 TIGR00343 pyridoxal 5'-phospha 98.8 4.2E-08 9.1E-13 89.3 12.2 48 99-147 184-233 (287)
73 PLN02446 (5-phosphoribosyl)-5- 98.8 3.6E-08 7.7E-13 89.5 11.3 123 2-146 101-242 (262)
74 TIGR01919 hisA-trpF 1-(5-phosp 98.8 3.9E-08 8.5E-13 88.7 11.5 127 2-151 93-234 (243)
75 PRK14114 1-(5-phosphoribosyl)- 98.8 4.2E-08 9.1E-13 88.4 11.4 126 2-150 92-231 (241)
76 cd04732 HisA HisA. Phosphorib 98.8 2.4E-08 5.2E-13 88.7 9.8 83 64-157 34-116 (234)
77 TIGR03151 enACPred_II putative 98.7 2.2E-07 4.7E-12 86.6 14.2 77 65-150 122-198 (307)
78 PRK13586 1-(5-phosphoribosyl)- 98.7 1.8E-07 3.8E-12 83.9 12.5 123 2-148 92-224 (232)
79 PRK05458 guanosine 5'-monophos 98.7 1.5E-07 3.2E-12 88.2 12.3 105 24-147 123-235 (326)
80 TIGR00735 hisF imidazoleglycer 98.7 7.2E-08 1.6E-12 87.3 9.6 83 65-158 36-118 (254)
81 cd04729 NanE N-acetylmannosami 98.7 2.1E-07 4.6E-12 82.3 10.9 103 27-150 110-214 (219)
82 PF04131 NanE: Putative N-acet 98.6 3.8E-07 8.2E-12 78.6 11.0 109 19-152 72-182 (192)
83 cd04723 HisA_HisF Phosphoribos 98.6 4.7E-07 1E-11 81.1 11.9 123 2-149 97-225 (233)
84 TIGR00734 hisAF_rel hisA/hisF 98.6 6E-07 1.3E-11 79.8 12.3 109 9-148 103-219 (221)
85 cd02922 FCB2_FMN Flavocytochro 98.6 2.7E-07 5.9E-12 87.2 10.1 108 24-150 197-308 (344)
86 cd00381 IMPDH IMPDH: The catal 98.6 5.9E-07 1.3E-11 84.3 12.0 107 25-150 119-234 (325)
87 cd02808 GltS_FMN Glutamate syn 98.6 1E-06 2.3E-11 84.7 13.9 117 23-148 196-320 (392)
88 PRK04128 1-(5-phosphoribosyl)- 98.6 4.4E-07 9.4E-12 81.1 10.0 117 2-149 92-218 (228)
89 TIGR01306 GMP_reduct_2 guanosi 98.5 6.8E-07 1.5E-11 83.5 11.4 105 26-147 122-232 (321)
90 cd04736 MDH_FMN Mandelate dehy 98.5 5.3E-07 1.1E-11 85.5 10.1 102 24-147 220-323 (361)
91 cd04727 pdxS PdxS is a subunit 98.5 1.3E-06 2.9E-11 79.6 12.2 114 21-149 95-232 (283)
92 COG0214 SNZ1 Pyridoxine biosyn 98.5 6.7E-07 1.4E-11 79.1 8.6 119 13-147 55-242 (296)
93 PLN02535 glycolate oxidase 98.5 5.7E-07 1.2E-11 85.4 8.8 109 24-151 207-316 (364)
94 KOG1436 Dihydroorotate dehydro 98.5 6.2E-07 1.4E-11 82.4 8.5 141 1-157 213-375 (398)
95 cd03332 LMO_FMN L-Lactate 2-mo 98.5 7.9E-07 1.7E-11 85.0 9.5 102 24-146 237-341 (383)
96 cd00331 IGPS Indole-3-glycerol 98.4 3.1E-06 6.6E-11 74.7 11.9 103 25-151 107-210 (217)
97 PRK01130 N-acetylmannosamine-6 98.4 2.3E-06 5E-11 75.7 11.1 101 26-147 105-207 (221)
98 TIGR02129 hisA_euk phosphoribo 98.4 2.5E-06 5.4E-11 77.2 11.0 123 2-147 94-237 (253)
99 PF01070 FMN_dh: FMN-dependent 98.4 8.1E-07 1.7E-11 84.4 8.1 102 24-146 209-313 (356)
100 PF01645 Glu_synthase: Conserv 98.4 2.4E-06 5.2E-11 81.2 10.6 114 22-147 184-308 (368)
101 PRK11197 lldD L-lactate dehydr 98.4 1.4E-06 3.1E-11 83.2 8.7 97 30-147 235-334 (381)
102 PLN02979 glycolate oxidase 98.3 2.7E-06 5.8E-11 80.5 9.0 105 24-147 207-312 (366)
103 TIGR03572 WbuZ glycosyl amidat 98.3 3.9E-06 8.5E-11 74.7 9.7 83 64-157 35-117 (232)
104 KOG1606 Stationary phase-induc 98.3 1.7E-06 3.7E-11 75.5 7.0 40 112-151 206-247 (296)
105 PRK00748 1-(5-phosphoribosyl)- 98.3 7.7E-06 1.7E-10 72.6 11.2 82 64-156 35-116 (233)
106 PRK13585 1-(5-phosphoribosyl)- 98.2 6.6E-06 1.4E-10 73.6 9.4 82 66-158 39-120 (241)
107 cd04728 ThiG Thiazole synthase 98.2 8.6E-06 1.9E-10 73.0 8.9 77 65-151 137-215 (248)
108 PLN02493 probable peroxisomal 98.2 8.1E-06 1.8E-10 77.7 9.2 104 25-147 209-313 (367)
109 PRK13125 trpA tryptophan synth 98.2 2.1E-05 4.6E-10 70.9 11.3 134 2-147 36-219 (244)
110 KOG1799 Dihydropyrimidine dehy 98.2 1.6E-06 3.5E-11 80.6 4.1 136 2-150 237-393 (471)
111 cd04730 NPD_like 2-Nitropropan 98.1 1.4E-05 3E-10 71.0 9.4 77 68-151 118-194 (236)
112 PRK04128 1-(5-phosphoribosyl)- 98.1 1.1E-05 2.5E-10 72.0 8.8 80 65-157 36-115 (228)
113 PRK00208 thiG thiazole synthas 98.1 1.7E-05 3.8E-10 71.1 9.2 77 65-151 137-215 (250)
114 COG3010 NanE Putative N-acetyl 98.1 4E-05 8.7E-10 66.8 10.5 110 18-151 105-217 (229)
115 PLN02617 imidazole glycerol ph 98.0 3.2E-05 6.9E-10 77.2 10.9 120 2-142 344-512 (538)
116 KOG0134 NADH:flavin oxidoreduc 98.0 1.9E-05 4E-10 75.3 8.7 138 13-153 212-359 (400)
117 PRK00278 trpC indole-3-glycero 98.0 0.00017 3.8E-09 65.6 14.5 104 24-151 145-249 (260)
118 PRK06843 inosine 5-monophospha 98.0 4E-05 8.6E-10 73.8 10.3 105 24-148 177-291 (404)
119 TIGR01303 IMP_DH_rel_1 IMP deh 98.0 7.8E-05 1.7E-09 73.4 12.3 104 23-146 248-361 (475)
120 PRK05567 inosine 5'-monophosph 98.0 3.6E-05 7.7E-10 76.1 9.6 104 26-149 254-366 (486)
121 TIGR00007 phosphoribosylformim 98.0 5.7E-05 1.2E-09 67.0 9.7 83 64-157 33-115 (230)
122 PRK07695 transcriptional regul 97.9 7.2E-05 1.6E-09 65.2 9.9 76 67-150 110-185 (201)
123 COG1304 idi Isopentenyl diphos 97.9 1.6E-05 3.6E-10 75.5 6.3 104 23-147 201-307 (360)
124 TIGR01302 IMP_dehydrog inosine 97.9 6.6E-05 1.4E-09 73.5 10.7 106 26-151 250-365 (450)
125 COG0107 HisF Imidazoleglycerol 97.9 5.2E-05 1.1E-09 67.2 8.9 79 64-152 35-113 (256)
126 PLN02274 inosine-5'-monophosph 97.9 0.00016 3.5E-09 71.8 12.5 104 27-147 275-385 (505)
127 PRK07807 inosine 5-monophospha 97.9 0.00012 2.7E-09 72.1 11.6 105 26-149 253-366 (479)
128 PRK13587 1-(5-phosphoribosyl)- 97.9 0.0001 2.2E-09 66.1 9.6 83 65-158 37-120 (234)
129 PRK01033 imidazole glycerol ph 97.8 0.0001 2.2E-09 67.0 9.7 81 64-157 35-117 (258)
130 cd00945 Aldolase_Class_I Class 97.8 0.00043 9.4E-09 59.0 13.1 104 24-142 95-201 (201)
131 TIGR01305 GMP_reduct_1 guanosi 97.8 0.0002 4.4E-09 67.1 11.6 68 67-142 166-241 (343)
132 PTZ00314 inosine-5'-monophosph 97.8 7.9E-05 1.7E-09 73.8 9.4 103 25-147 266-378 (495)
133 PF03060 NMO: Nitronate monoox 97.8 0.00035 7.6E-09 65.7 12.5 50 101-151 179-228 (330)
134 KOG2334 tRNA-dihydrouridine sy 97.7 2.3E-05 5.1E-10 74.6 3.4 130 2-152 292-421 (477)
135 PRK14024 phosphoribosyl isomer 97.7 0.00021 4.5E-09 64.3 9.3 81 65-157 38-118 (241)
136 PRK07107 inosine 5-monophospha 97.6 0.00037 7.9E-09 69.2 10.7 104 27-147 269-386 (502)
137 KOG0538 Glycolate oxidase [Ene 97.6 0.00027 5.8E-09 65.2 8.7 102 24-146 207-311 (363)
138 TIGR01304 IMP_DH_rel_2 IMP deh 97.6 0.00033 7.1E-09 66.9 9.7 36 113-148 255-290 (369)
139 cd04743 NPD_PKS 2-Nitropropane 97.6 0.0021 4.5E-08 60.3 14.8 135 11-151 23-211 (320)
140 PF00977 His_biosynth: Histidi 97.6 0.00019 4E-09 64.1 6.7 82 64-156 34-115 (229)
141 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00041 8.9E-09 62.6 9.0 82 64-157 35-116 (241)
142 PRK08649 inosine 5-monophospha 97.5 0.00044 9.5E-09 66.1 9.3 37 113-149 256-292 (368)
143 PRK00043 thiE thiamine-phospha 97.5 0.0008 1.7E-08 58.5 10.0 76 69-150 121-196 (212)
144 PRK05096 guanosine 5'-monophos 97.5 0.0011 2.3E-08 62.4 10.7 73 67-148 167-248 (346)
145 TIGR00693 thiE thiamine-phosph 97.5 0.001 2.2E-08 57.4 9.9 77 68-150 112-188 (196)
146 PRK00507 deoxyribose-phosphate 97.5 0.0014 2.9E-08 58.5 10.7 112 18-144 98-210 (221)
147 cd00564 TMP_TenI Thiamine mono 97.4 0.001 2.2E-08 56.6 9.6 76 68-150 111-186 (196)
148 cd03319 L-Ala-DL-Glu_epimerase 97.4 0.0019 4E-08 60.1 11.9 97 24-142 160-258 (316)
149 cd02812 PcrB_like PcrB_like pr 97.4 0.00097 2.1E-08 59.3 9.3 52 101-152 163-214 (219)
150 PF00478 IMPDH: IMP dehydrogen 97.4 0.0006 1.3E-08 64.6 8.3 101 26-146 134-244 (352)
151 TIGR01949 AroFGH_arch predicte 97.4 0.0029 6.2E-08 57.4 11.9 106 26-151 120-236 (258)
152 TIGR02129 hisA_euk phosphoribo 97.3 0.0011 2.4E-08 60.1 9.0 69 64-149 43-111 (253)
153 PRK11750 gltB glutamate syntha 97.3 0.0016 3.4E-08 71.1 11.5 117 24-149 979-1103(1485)
154 TIGR01768 GGGP-family geranylg 97.3 0.00041 8.9E-09 61.8 5.8 55 98-152 164-218 (223)
155 PRK07226 fructose-bisphosphate 97.3 0.0033 7.2E-08 57.4 11.7 107 26-151 122-240 (267)
156 PLN02591 tryptophan synthase 97.3 0.0061 1.3E-07 55.3 13.2 42 104-146 181-222 (250)
157 TIGR03128 RuMP_HxlA 3-hexulose 97.3 0.0089 1.9E-07 52.0 13.7 107 25-150 88-194 (206)
158 TIGR01919 hisA-trpF 1-(5-phosp 97.2 0.0019 4.2E-08 58.3 9.3 80 65-156 37-116 (243)
159 cd00958 DhnA Class I fructose- 97.2 0.006 1.3E-07 54.3 12.4 69 65-151 149-223 (235)
160 PRK13586 1-(5-phosphoribosyl)- 97.2 0.0026 5.6E-08 57.1 9.5 81 64-156 35-115 (232)
161 CHL00162 thiG thiamin biosynth 97.2 0.0055 1.2E-07 55.4 11.3 73 64-147 150-223 (267)
162 PRK04169 geranylgeranylglycery 97.2 0.00095 2.1E-08 59.9 6.3 52 98-150 169-221 (232)
163 TIGR01769 GGGP geranylgeranylg 97.2 0.0035 7.5E-08 55.3 9.7 68 63-142 138-205 (205)
164 cd00959 DeoC 2-deoxyribose-5-p 97.1 0.0042 9.2E-08 54.3 10.2 108 17-139 92-200 (203)
165 COG0107 HisF Imidazoleglycerol 97.1 0.0032 6.9E-08 56.1 9.0 121 2-142 93-229 (256)
166 cd00381 IMPDH IMPDH: The catal 97.1 0.0061 1.3E-07 57.4 11.5 96 24-142 68-163 (325)
167 PLN02446 (5-phosphoribosyl)-5- 97.1 0.0029 6.4E-08 57.6 8.9 77 64-156 48-128 (262)
168 COG0106 HisA Phosphoribosylfor 97.0 0.0035 7.5E-08 56.3 8.8 82 65-157 37-118 (241)
169 cd04723 HisA_HisF Phosphoribos 97.0 0.0036 7.9E-08 56.0 8.8 80 64-156 40-119 (233)
170 TIGR00262 trpA tryptophan synt 97.0 0.01 2.2E-07 54.0 11.7 45 101-146 187-231 (256)
171 COG2070 Dioxygenases related t 97.0 0.0016 3.4E-08 61.6 6.6 81 65-150 140-221 (336)
172 PF01884 PcrB: PcrB family; I 97.0 0.0035 7.5E-08 56.1 8.3 50 102-151 171-220 (230)
173 PRK07455 keto-hydroxyglutarate 97.0 0.0038 8.3E-08 54.1 8.3 64 69-147 122-185 (187)
174 COG0069 GltB Glutamate synthas 97.0 0.008 1.7E-07 59.0 11.3 113 24-147 286-408 (485)
175 PLN02617 imidazole glycerol ph 97.0 0.0039 8.5E-08 62.4 9.3 79 64-149 272-361 (538)
176 PRK07565 dihydroorotate dehydr 97.0 0.013 2.8E-07 55.2 12.3 107 25-141 86-196 (334)
177 COG0352 ThiE Thiamine monophos 96.9 0.0066 1.4E-07 53.7 9.5 76 68-151 120-195 (211)
178 COG0269 SgbH 3-hexulose-6-phos 96.9 0.018 4E-07 50.8 12.0 108 24-150 91-200 (217)
179 cd00452 KDPG_aldolase KDPG and 96.9 0.0047 1E-07 53.4 8.2 62 69-146 114-175 (190)
180 cd04727 pdxS PdxS is a subunit 96.9 0.0086 1.9E-07 54.9 10.1 94 13-139 43-136 (283)
181 CHL00200 trpA tryptophan synth 96.8 0.045 9.7E-07 50.1 14.4 43 104-147 194-236 (263)
182 PF02581 TMP-TENI: Thiamine mo 96.8 0.0059 1.3E-07 52.3 8.1 71 67-145 110-180 (180)
183 PRK03512 thiamine-phosphate py 96.8 0.011 2.3E-07 52.3 9.9 78 68-151 118-195 (211)
184 PRK04302 triosephosphate isome 96.8 0.0072 1.6E-07 53.6 8.8 45 106-150 165-210 (223)
185 PF00478 IMPDH: IMP dehydrogen 96.7 0.0086 1.9E-07 56.9 8.9 101 25-144 72-179 (352)
186 TIGR00126 deoC deoxyribose-pho 96.7 0.014 3E-07 51.7 9.6 110 17-141 93-203 (211)
187 PRK02615 thiamine-phosphate py 96.6 0.014 3.1E-07 55.3 9.7 74 69-150 257-330 (347)
188 cd03315 MLE_like Muconate lact 96.6 0.037 8.1E-07 50.1 12.1 96 24-141 111-209 (265)
189 PF05690 ThiG: Thiazole biosyn 96.6 0.0097 2.1E-07 53.2 7.7 72 65-147 137-209 (247)
190 PLN02334 ribulose-phosphate 3- 96.5 0.017 3.6E-07 51.5 9.3 51 100-151 161-211 (229)
191 PF01680 SOR_SNZ: SOR/SNZ fami 96.5 0.0056 1.2E-07 52.5 5.6 95 12-139 48-142 (208)
192 cd00331 IGPS Indole-3-glycerol 96.5 0.015 3.2E-07 51.2 8.4 71 64-147 36-106 (217)
193 cd00405 PRAI Phosphoribosylant 96.5 0.021 4.6E-07 49.7 9.3 72 69-151 117-190 (203)
194 PRK05848 nicotinate-nucleotide 96.4 0.049 1.1E-06 50.1 11.9 102 19-151 154-266 (273)
195 PF01791 DeoC: DeoC/LacD famil 96.4 0.0096 2.1E-07 53.2 6.9 112 24-147 106-235 (236)
196 PRK06512 thiamine-phosphate py 96.4 0.025 5.4E-07 50.4 9.4 74 69-151 128-201 (221)
197 TIGR00259 thylakoid_BtpA membr 96.4 0.023 4.9E-07 51.8 9.2 78 56-151 158-235 (257)
198 PRK07028 bifunctional hexulose 96.4 0.017 3.7E-07 56.3 8.9 104 28-151 96-199 (430)
199 PRK09140 2-dehydro-3-deoxy-6-p 96.3 0.025 5.3E-07 49.8 8.9 65 69-149 121-186 (206)
200 PTZ00314 inosine-5'-monophosph 96.3 0.015 3.2E-07 57.8 8.2 64 66-142 247-310 (495)
201 cd04742 NPD_FabD 2-Nitropropan 96.3 0.017 3.6E-07 56.1 8.3 39 113-151 219-257 (418)
202 PRK07315 fructose-bisphosphate 96.3 0.074 1.6E-06 49.4 12.3 72 70-149 164-239 (293)
203 PRK07428 nicotinate-nucleotide 96.2 0.086 1.9E-06 48.9 12.2 40 111-151 241-280 (288)
204 PRK06552 keto-hydroxyglutarate 96.2 0.045 9.7E-07 48.5 10.0 62 69-146 126-187 (213)
205 PF00218 IGPS: Indole-3-glycer 96.2 0.016 3.4E-07 52.8 7.1 52 100-151 195-247 (254)
206 TIGR02814 pfaD_fam PfaD family 96.2 0.023 5E-07 55.5 8.6 39 113-151 224-262 (444)
207 TIGR00734 hisAF_rel hisA/hisF 96.2 0.022 4.7E-07 50.7 7.8 79 64-156 41-121 (221)
208 PRK06806 fructose-bisphosphate 96.1 0.11 2.5E-06 47.8 12.5 75 68-150 162-238 (281)
209 PRK05458 guanosine 5'-monophos 96.0 0.058 1.3E-06 50.8 10.2 101 20-142 65-168 (326)
210 cd04726 KGPDC_HPS 3-Keto-L-gul 96.0 0.038 8.1E-07 47.7 8.2 71 69-150 123-194 (202)
211 TIGR01302 IMP_dehydrog inosine 95.9 0.022 4.8E-07 55.9 7.4 63 67-142 231-293 (450)
212 TIGR01303 IMP_DH_rel_1 IMP deh 95.9 0.031 6.7E-07 55.3 8.3 66 66-144 231-296 (475)
213 PRK13957 indole-3-glycerol-pho 95.9 0.048 1E-06 49.4 8.8 72 64-148 66-137 (247)
214 PRK06801 hypothetical protein; 95.7 0.13 2.8E-06 47.6 11.2 72 66-147 163-238 (286)
215 PRK05437 isopentenyl pyrophosp 95.7 0.12 2.6E-06 49.2 11.2 113 18-142 98-217 (352)
216 TIGR01859 fruc_bis_ald_ fructo 95.7 0.19 4E-06 46.5 12.2 69 68-146 162-234 (282)
217 cd03316 MR_like Mandelate race 95.7 0.082 1.8E-06 49.8 10.1 98 23-142 170-270 (357)
218 cd04724 Tryptophan_synthase_al 95.7 0.16 3.5E-06 45.7 11.4 44 101-146 176-219 (242)
219 COG0134 TrpC Indole-3-glycerol 95.7 0.087 1.9E-06 47.8 9.6 130 21-151 85-245 (254)
220 cd00429 RPE Ribulose-5-phospha 95.7 0.031 6.8E-07 48.3 6.6 38 113-151 166-203 (211)
221 PRK05096 guanosine 5'-monophos 95.7 0.1 2.2E-06 49.2 10.2 100 25-144 81-181 (346)
222 COG2022 ThiG Uncharacterized e 95.7 0.056 1.2E-06 48.3 7.9 47 104-151 174-222 (262)
223 TIGR01305 GMP_reduct_1 guanosi 95.6 0.12 2.6E-06 48.7 10.6 98 25-142 80-178 (343)
224 PLN02460 indole-3-glycerol-pho 95.6 0.088 1.9E-06 49.7 9.6 121 30-151 170-326 (338)
225 PRK05283 deoxyribose-phosphate 95.6 0.11 2.4E-06 47.4 9.9 116 17-151 106-226 (257)
226 TIGR01163 rpe ribulose-phospha 95.6 0.045 9.7E-07 47.4 7.0 38 113-151 165-202 (210)
227 PRK08999 hypothetical protein; 95.5 0.061 1.3E-06 49.8 8.2 70 68-145 242-311 (312)
228 PRK12290 thiE thiamine-phospha 95.3 0.11 2.4E-06 50.6 9.4 78 68-151 316-401 (437)
229 PRK05567 inosine 5'-monophosph 95.2 0.068 1.5E-06 53.0 7.9 64 66-142 234-297 (486)
230 COG0159 TrpA Tryptophan syntha 95.2 0.76 1.7E-05 42.0 13.9 119 24-146 77-237 (265)
231 PRK13957 indole-3-glycerol-pho 95.2 0.15 3.3E-06 46.2 9.3 117 30-151 92-239 (247)
232 PRK07807 inosine 5-monophospha 95.1 0.076 1.6E-06 52.6 7.9 66 66-144 233-298 (479)
233 PRK11840 bifunctional sulfur c 95.1 0.12 2.7E-06 48.4 8.7 46 101-147 238-283 (326)
234 TIGR02151 IPP_isom_2 isopenten 95.1 0.38 8.3E-06 45.3 12.2 112 18-142 91-210 (333)
235 PLN02274 inosine-5'-monophosph 95.1 0.067 1.4E-06 53.3 7.4 63 67-142 255-317 (505)
236 TIGR01306 GMP_reduct_2 guanosi 95.1 0.18 4E-06 47.4 9.9 106 14-142 57-165 (321)
237 PRK09517 multifunctional thiam 95.1 0.1 2.2E-06 54.5 9.1 53 98-151 149-203 (755)
238 cd01568 QPRTase_NadC Quinolina 95.1 0.34 7.4E-06 44.4 11.4 39 112-151 226-264 (269)
239 PF03437 BtpA: BtpA family; I 95.0 0.22 4.8E-06 45.3 9.9 70 66-150 166-235 (254)
240 KOG2550 IMP dehydrogenase/GMP 95.0 0.28 6E-06 47.3 10.8 65 67-144 258-322 (503)
241 COG0274 DeoC Deoxyribose-phosp 94.9 0.18 3.8E-06 45.0 8.7 106 17-137 100-207 (228)
242 PRK13111 trpA tryptophan synth 94.9 0.18 4E-06 45.9 9.1 119 24-146 72-232 (258)
243 PRK06843 inosine 5-monophospha 94.8 0.11 2.4E-06 50.3 7.7 64 67-143 160-223 (404)
244 PF01081 Aldolase: KDPG and KH 94.7 0.32 6.9E-06 42.6 9.9 62 64-141 25-86 (196)
245 PRK13307 bifunctional formalde 94.6 0.22 4.8E-06 48.1 9.4 69 70-150 297-366 (391)
246 TIGR00078 nadC nicotinate-nucl 94.6 0.64 1.4E-05 42.5 12.0 64 68-150 194-258 (265)
247 PRK08883 ribulose-phosphate 3- 94.6 0.51 1.1E-05 42.0 11.0 37 113-150 167-203 (220)
248 TIGR01182 eda Entner-Doudoroff 94.5 0.26 5.7E-06 43.4 8.9 69 64-151 25-93 (204)
249 PRK13802 bifunctional indole-3 94.5 0.21 4.6E-06 51.6 9.5 121 30-151 101-249 (695)
250 KOG2550 IMP dehydrogenase/GMP 94.5 0.047 1E-06 52.5 4.3 73 68-147 309-387 (503)
251 TIGR01361 DAHP_synth_Bsub phos 94.4 1.1 2.3E-05 41.0 13.0 112 17-145 114-232 (260)
252 PF01729 QRPTase_C: Quinolinat 94.4 0.7 1.5E-05 39.4 11.1 97 28-151 66-164 (169)
253 COG1411 Uncharacterized protei 94.4 0.47 1E-05 41.6 10.0 47 101-148 170-216 (229)
254 cd02811 IDI-2_FMN Isopentenyl- 94.4 0.79 1.7E-05 43.1 12.5 112 18-142 90-209 (326)
255 PRK08072 nicotinate-nucleotide 94.4 0.73 1.6E-05 42.5 11.9 64 69-151 205-269 (277)
256 COG1646 Predicted phosphate-bi 94.3 0.073 1.6E-06 47.6 5.0 50 100-152 181-230 (240)
257 PRK05742 nicotinate-nucleotide 94.3 0.24 5.2E-06 45.6 8.5 64 69-151 206-270 (277)
258 PRK06852 aldolase; Validated 94.2 1.1 2.5E-05 41.8 12.9 80 59-150 188-273 (304)
259 TIGR01182 eda Entner-Doudoroff 94.2 0.38 8.3E-06 42.4 9.2 68 69-151 118-185 (204)
260 PRK08227 autoinducer 2 aldolas 94.2 0.99 2.1E-05 41.3 12.2 48 102-150 182-234 (264)
261 PLN02898 HMP-P kinase/thiamin- 94.2 0.28 6E-06 48.8 9.3 75 68-150 406-483 (502)
262 PRK06015 keto-hydroxyglutarate 94.2 0.35 7.7E-06 42.5 8.9 62 64-141 21-82 (201)
263 cd02922 FCB2_FMN Flavocytochro 94.1 0.98 2.1E-05 42.9 12.4 42 99-142 200-241 (344)
264 PLN02535 glycolate oxidase 94.1 0.89 1.9E-05 43.5 12.1 44 97-142 208-251 (364)
265 PRK09427 bifunctional indole-3 94.0 0.43 9.4E-06 47.0 10.1 120 30-151 100-247 (454)
266 cd00377 ICL_PEPM Members of th 94.0 0.46 9.9E-06 42.8 9.5 54 23-80 52-105 (243)
267 PLN02979 glycolate oxidase 93.9 0.9 2E-05 43.5 11.8 44 97-142 208-251 (366)
268 cd01572 QPRTase Quinolinate ph 93.9 0.24 5.2E-06 45.4 7.7 63 69-150 199-262 (268)
269 PRK06552 keto-hydroxyglutarate 93.9 1.1 2.3E-05 39.7 11.6 62 64-140 30-93 (213)
270 PTZ00170 D-ribulose-5-phosphat 93.9 0.58 1.2E-05 41.7 9.9 49 101-150 161-209 (228)
271 PRK07107 inosine 5-monophospha 93.8 0.16 3.5E-06 50.6 6.9 68 65-144 247-314 (502)
272 cd04739 DHOD_like Dihydroorota 93.8 1.3 2.7E-05 41.7 12.6 103 26-141 85-194 (325)
273 cd04737 LOX_like_FMN L-Lactate 93.8 0.83 1.8E-05 43.5 11.4 50 98-149 207-260 (351)
274 COG0800 Eda 2-keto-3-deoxy-6-p 93.7 0.98 2.1E-05 39.9 10.7 61 64-140 30-90 (211)
275 cd06557 KPHMT-like Ketopantoat 93.6 1.1 2.5E-05 40.7 11.4 100 22-141 54-177 (254)
276 PRK08385 nicotinate-nucleotide 93.6 1.1 2.4E-05 41.3 11.6 39 112-151 230-268 (278)
277 cd02809 alpha_hydroxyacid_oxid 93.5 1.3 2.7E-05 41.1 11.9 65 65-141 135-199 (299)
278 COG1830 FbaB DhnA-type fructos 93.3 1.2 2.6E-05 40.7 11.0 110 23-150 124-245 (265)
279 PRK00278 trpC indole-3-glycero 93.3 0.46 1E-05 43.3 8.5 75 64-151 75-149 (260)
280 TIGR02320 PEP_mutase phosphoen 93.3 1.4 3E-05 40.8 11.6 111 25-142 63-189 (285)
281 PRK07709 fructose-bisphosphate 93.2 1.8 3.9E-05 40.1 12.1 108 24-145 116-236 (285)
282 PLN02493 probable peroxisomal 93.0 1.6 3.5E-05 41.8 12.0 44 97-142 209-252 (367)
283 cd04740 DHOD_1B_like Dihydroor 93.0 2.1 4.6E-05 39.3 12.5 102 32-141 81-185 (296)
284 PRK07114 keto-hydroxyglutarate 93.0 1.9 4.2E-05 38.4 11.7 69 64-151 32-104 (222)
285 PRK13397 3-deoxy-7-phosphohept 92.8 2.8 6.1E-05 38.1 12.6 112 17-145 104-222 (250)
286 PF01081 Aldolase: KDPG and KH 92.7 0.33 7.2E-06 42.5 6.3 68 69-151 118-185 (196)
287 PRK07114 keto-hydroxyglutarate 92.7 0.91 2E-05 40.5 9.2 68 69-151 129-197 (222)
288 PRK08673 3-deoxy-7-phosphohept 92.6 2.1 4.6E-05 40.5 12.0 112 17-145 182-300 (335)
289 PRK12595 bifunctional 3-deoxy- 92.6 2.3 4.9E-05 40.7 12.3 116 17-151 207-329 (360)
290 TIGR02708 L_lactate_ox L-lacta 92.5 2 4.4E-05 41.2 11.9 44 97-142 213-256 (367)
291 TIGR01334 modD putative molybd 92.5 1.9 4.1E-05 39.8 11.2 90 27-143 174-264 (277)
292 PRK08185 hypothetical protein; 92.3 2.8 6.1E-05 38.8 12.2 73 66-145 156-231 (283)
293 PRK13398 3-deoxy-7-phosphohept 92.3 2.7 5.7E-05 38.5 11.9 112 17-145 116-234 (266)
294 PRK05718 keto-hydroxyglutarate 92.3 2.9 6.2E-05 37.0 11.8 87 30-141 7-93 (212)
295 PF00218 IGPS: Indole-3-glycer 92.2 0.47 1E-05 43.2 6.8 74 64-150 73-146 (254)
296 PRK09140 2-dehydro-3-deoxy-6-p 92.1 1 2.3E-05 39.5 8.8 80 42-142 11-90 (206)
297 PRK07896 nicotinate-nucleotide 92.1 2.9 6.2E-05 38.9 12.0 40 111-151 244-283 (289)
298 PF04131 NanE: Putative N-acet 92.0 1.7 3.7E-05 37.9 9.7 87 32-140 24-117 (192)
299 COG0434 SgcQ Predicted TIM-bar 92.0 1.1 2.3E-05 40.5 8.6 69 65-148 170-238 (263)
300 TIGR02317 prpB methylisocitrat 91.9 3.1 6.7E-05 38.5 12.0 53 24-80 57-109 (285)
301 PRK08610 fructose-bisphosphate 91.9 3 6.4E-05 38.7 11.8 109 23-145 115-236 (286)
302 PF04481 DUF561: Protein of un 91.8 1.1 2.4E-05 39.8 8.5 113 24-145 101-217 (242)
303 PRK13396 3-deoxy-7-phosphohept 91.7 2.8 6.1E-05 40.0 11.7 111 17-144 190-308 (352)
304 cd00408 DHDPS-like Dihydrodipi 91.7 1.6 3.5E-05 39.7 9.9 110 15-140 39-157 (281)
305 cd00377 ICL_PEPM Members of th 91.7 3.3 7.1E-05 37.3 11.7 109 18-145 116-229 (243)
306 PRK00311 panB 3-methyl-2-oxobu 91.6 2.7 5.8E-05 38.5 11.2 56 23-80 58-115 (264)
307 TIGR02321 Pphn_pyruv_hyd phosp 91.6 3.7 8E-05 38.1 12.2 53 24-80 59-111 (290)
308 cd06556 ICL_KPHMT Members of t 91.6 1.4 3E-05 39.8 9.2 84 27-142 113-209 (240)
309 PRK11320 prpB 2-methylisocitra 91.5 3.7 8E-05 38.2 12.0 53 24-80 62-114 (292)
310 cd00452 KDPG_aldolase KDPG and 91.4 1.5 3.3E-05 37.7 8.9 62 65-142 22-83 (190)
311 cd01573 modD_like ModD; Quinol 91.4 0.44 9.6E-06 43.8 5.8 32 112-144 229-260 (272)
312 PRK13813 orotidine 5'-phosphat 91.3 3.4 7.4E-05 36.0 11.2 105 26-150 93-200 (215)
313 TIGR02320 PEP_mutase phosphoen 91.2 4.8 0.0001 37.3 12.5 108 21-146 130-244 (285)
314 PRK00230 orotidine 5'-phosphat 91.2 0.87 1.9E-05 40.6 7.4 25 127-151 192-216 (230)
315 PLN02424 ketopantoate hydroxym 91.1 3.1 6.7E-05 39.3 11.2 107 17-141 72-201 (332)
316 cd03321 mandelate_racemase Man 91.0 3.4 7.3E-05 39.1 11.7 43 98-141 223-266 (355)
317 PRK05581 ribulose-phosphate 3- 90.9 0.31 6.8E-06 42.5 4.2 36 115-151 172-207 (220)
318 PRK14040 oxaloacetate decarbox 90.7 12 0.00025 38.4 15.7 192 22-235 120-324 (593)
319 PRK12737 gatY tagatose-bisphos 90.6 5.9 0.00013 36.7 12.4 71 67-146 163-236 (284)
320 PRK12858 tagatose 1,6-diphosph 90.5 4.5 9.7E-05 38.4 11.8 89 61-151 186-285 (340)
321 PF00290 Trp_syntA: Tryptophan 90.5 0.76 1.7E-05 42.0 6.4 43 103-147 189-231 (259)
322 cd03329 MR_like_4 Mandelate ra 90.5 3 6.6E-05 39.6 10.9 41 100-141 228-270 (368)
323 TIGR01858 tag_bisphos_ald clas 90.4 5.7 0.00012 36.7 12.2 72 66-146 160-234 (282)
324 PRK06106 nicotinate-nucleotide 90.4 5.7 0.00012 36.7 12.1 62 70-150 212-274 (281)
325 cd04729 NanE N-acetylmannosami 90.4 3.5 7.5E-05 36.2 10.4 107 18-141 40-149 (219)
326 PRK14567 triosephosphate isome 90.3 0.36 7.8E-06 43.9 4.1 40 112-153 201-241 (253)
327 cd06556 ICL_KPHMT Members of t 90.1 5 0.00011 36.2 11.4 54 24-80 56-110 (240)
328 PRK06559 nicotinate-nucleotide 90.1 4.8 0.0001 37.4 11.4 64 69-151 214-278 (290)
329 PRK13306 ulaD 3-keto-L-gulonat 89.9 2.7 5.9E-05 37.2 9.3 37 113-150 163-199 (216)
330 PRK06978 nicotinate-nucleotide 89.6 5.6 0.00012 37.0 11.4 64 69-151 222-286 (294)
331 PLN02460 indole-3-glycerol-pho 89.6 1.1 2.4E-05 42.4 6.9 76 64-151 144-219 (338)
332 PF02548 Pantoate_transf: Keto 89.6 12 0.00026 34.2 13.3 118 3-141 41-181 (261)
333 TIGR02319 CPEP_Pphonmut carbox 89.4 5.8 0.00013 36.9 11.4 52 25-80 62-113 (294)
334 TIGR00167 cbbA ketose-bisphosp 89.4 7.1 0.00015 36.2 12.0 72 66-146 165-240 (288)
335 PRK09016 quinolinate phosphori 89.3 5.9 0.00013 36.9 11.3 64 69-151 225-289 (296)
336 COG2513 PrpB PEP phosphonomuta 89.3 3.5 7.7E-05 38.1 9.7 51 25-79 63-113 (289)
337 PRK09195 gatY tagatose-bisphos 89.2 8.2 0.00018 35.7 12.2 71 67-146 163-236 (284)
338 cd04736 MDH_FMN Mandelate dehy 89.2 0.83 1.8E-05 43.7 5.8 43 98-142 222-264 (361)
339 TIGR02317 prpB methylisocitrat 89.2 8.4 0.00018 35.7 12.3 106 22-146 124-233 (285)
340 PRK08005 epimerase; Validated 89.1 8.2 0.00018 34.1 11.7 49 101-150 151-199 (210)
341 TIGR00222 panB 3-methyl-2-oxob 89.0 4.4 9.5E-05 37.1 10.2 97 19-141 54-179 (263)
342 PRK07455 keto-hydroxyglutarate 89.0 6.6 0.00014 33.8 10.9 89 30-143 4-92 (187)
343 PRK09282 pyruvate carboxylase 88.9 20 0.00044 36.6 15.8 192 22-235 119-323 (592)
344 cd03332 LMO_FMN L-Lactate 2-mo 88.6 0.96 2.1E-05 43.6 5.8 44 97-142 238-281 (383)
345 PRK14905 triosephosphate isome 88.6 1.8 3.8E-05 41.4 7.5 71 113-190 213-287 (355)
346 PLN02495 oxidoreductase, actin 88.4 6.7 0.00014 37.9 11.5 105 29-145 101-217 (385)
347 PF04309 G3P_antiterm: Glycero 88.4 0.45 9.7E-06 40.9 3.1 35 112-146 139-173 (175)
348 PRK06543 nicotinate-nucleotide 88.4 8.2 0.00018 35.7 11.6 63 70-151 211-274 (281)
349 PRK07998 gatY putative fructos 88.4 2.5 5.3E-05 39.2 8.2 73 65-147 159-234 (283)
350 PF00834 Ribul_P_3_epim: Ribul 88.3 2.3 5.1E-05 37.2 7.6 36 112-148 165-200 (201)
351 cd00947 TBP_aldolase_IIB Tagat 88.0 9.5 0.0002 35.2 11.7 72 66-145 155-229 (276)
352 cd02810 DHOD_DHPD_FMN Dihydroo 87.9 12 0.00025 34.2 12.4 107 26-142 83-196 (289)
353 COG0134 TrpC Indole-3-glycerol 87.9 1.4 3E-05 40.2 6.0 75 64-151 71-145 (254)
354 COG0036 Rpe Pentose-5-phosphat 87.6 8.4 0.00018 34.3 10.7 37 113-150 169-205 (220)
355 TIGR02313 HpaI-NOT-DapA 2,4-di 87.6 3 6.6E-05 38.5 8.4 77 66-149 28-109 (294)
356 PRK06096 molybdenum transport 87.5 9 0.0002 35.5 11.3 92 28-151 176-272 (284)
357 cd00311 TIM Triosephosphate is 87.4 1.1 2.3E-05 40.5 5.1 38 113-152 199-237 (242)
358 PRK06015 keto-hydroxyglutarate 87.3 5.2 0.00011 35.2 9.2 63 69-146 114-176 (201)
359 cd00952 CHBPH_aldolase Trans-o 87.2 6.7 0.00015 36.5 10.5 104 15-133 50-161 (309)
360 PF09370 TIM-br_sig_trns: TIM- 87.1 0.83 1.8E-05 41.8 4.2 74 67-144 165-248 (268)
361 PRK07259 dihydroorotate dehydr 87.0 14 0.0003 34.0 12.5 104 27-141 79-188 (301)
362 TIGR02319 CPEP_Pphonmut carbox 86.5 16 0.00035 34.0 12.4 104 24-146 130-237 (294)
363 PRK14565 triosephosphate isome 86.5 1.4 3.1E-05 39.6 5.3 39 112-152 188-227 (237)
364 TIGR01521 FruBisAldo_II_B fruc 86.5 12 0.00025 35.8 11.6 64 66-133 178-244 (347)
365 PRK08745 ribulose-phosphate 3- 86.3 14 0.0003 33.0 11.5 37 113-150 171-207 (223)
366 PRK05718 keto-hydroxyglutarate 86.1 4.2 9.1E-05 36.0 8.1 66 69-150 125-190 (212)
367 COG1954 GlpP Glycerol-3-phosph 86.0 2.6 5.6E-05 36.2 6.3 38 103-141 135-172 (181)
368 PRK12857 fructose-1,6-bisphosp 85.7 18 0.00039 33.5 12.3 72 66-146 162-236 (284)
369 cd00951 KDGDH 5-dehydro-4-deox 85.6 4 8.6E-05 37.6 8.0 77 65-149 27-108 (289)
370 KOG4201 Anthranilate synthase 85.4 4.7 0.0001 36.0 7.8 46 105-150 228-274 (289)
371 PRK03620 5-dehydro-4-deoxygluc 85.3 4.2 9.1E-05 37.7 8.1 84 57-149 27-115 (303)
372 COG2876 AroA 3-deoxy-D-arabino 85.3 12 0.00027 34.3 10.7 115 17-151 134-256 (286)
373 PRK11320 prpB 2-methylisocitra 85.3 18 0.00038 33.7 12.0 106 22-146 129-238 (292)
374 PLN02561 triosephosphate isome 84.9 2 4.3E-05 39.1 5.6 40 112-154 203-243 (253)
375 COG0329 DapA Dihydrodipicolina 84.9 14 0.0003 34.4 11.2 100 18-133 49-156 (299)
376 PRK01130 N-acetylmannosamine-6 84.7 14 0.00031 32.2 10.8 97 29-142 45-146 (221)
377 PRK13802 bifunctional indole-3 84.6 4.1 8.8E-05 42.4 8.2 74 64-150 75-148 (695)
378 PRK09196 fructose-1,6-bisphosp 84.5 14 0.0003 35.2 11.2 64 66-132 180-245 (347)
379 PRK12457 2-dehydro-3-deoxyphos 84.5 20 0.00043 33.1 11.8 115 17-150 112-243 (281)
380 PLN02417 dihydrodipicolinate s 84.5 5.2 0.00011 36.6 8.2 76 66-149 29-110 (280)
381 PRK09250 fructose-bisphosphate 84.5 12 0.00026 35.6 10.7 91 59-150 217-326 (348)
382 PF01116 F_bP_aldolase: Fructo 84.2 4.7 0.0001 37.3 7.7 75 66-146 162-239 (287)
383 PRK11197 lldD L-lactate dehydr 84.2 2 4.3E-05 41.4 5.5 44 97-142 230-273 (381)
384 cd00952 CHBPH_aldolase Trans-o 84.1 5.1 0.00011 37.3 8.1 85 57-149 28-117 (309)
385 cd04730 NPD_like 2-Nitropropan 84.0 28 0.00061 30.4 12.7 92 24-141 37-128 (236)
386 COG0329 DapA Dihydrodipicolina 84.0 4.5 9.8E-05 37.6 7.6 86 57-150 24-114 (299)
387 COG0149 TpiA Triosephosphate i 83.8 1.4 3.1E-05 40.0 4.1 39 112-150 201-239 (251)
388 PRK05835 fructose-bisphosphate 83.7 7.1 0.00015 36.6 8.7 63 66-135 162-227 (307)
389 TIGR00683 nanA N-acetylneurami 83.5 14 0.0003 34.1 10.6 104 15-133 43-154 (290)
390 PTZ00333 triosephosphate isome 83.4 1.5 3.3E-05 39.9 4.1 38 113-153 207-245 (255)
391 cd00408 DHDPS-like Dihydrodipi 83.3 7.3 0.00016 35.3 8.7 77 66-149 25-106 (281)
392 COG4981 Enoyl reductase domain 83.3 9 0.0002 38.6 9.5 43 108-150 208-261 (717)
393 PLN02716 nicotinate-nucleotide 83.2 7.4 0.00016 36.4 8.6 116 18-151 171-299 (308)
394 PRK00042 tpiA triosephosphate 82.9 1.9 4.2E-05 39.1 4.5 38 113-152 203-241 (250)
395 COG0157 NadC Nicotinate-nucleo 82.8 5.6 0.00012 36.7 7.5 108 17-151 158-271 (280)
396 cd04722 TIM_phosphate_binding 82.5 17 0.00037 29.9 10.0 97 31-144 48-145 (200)
397 cd03324 rTSbeta_L-fuconate_deh 82.3 20 0.00043 34.9 11.7 45 96-140 275-322 (415)
398 cd03328 MR_like_3 Mandelate ra 82.2 15 0.00032 34.8 10.5 44 97-140 218-263 (352)
399 PRK08091 ribulose-phosphate 3- 82.0 35 0.00077 30.5 12.2 37 113-150 179-215 (228)
400 COG1908 FrhD Coenzyme F420-red 81.7 1.9 4E-05 34.9 3.5 34 114-148 33-66 (132)
401 cd04726 KGPDC_HPS 3-Keto-L-gul 81.6 19 0.00042 30.6 10.3 89 29-142 41-133 (202)
402 KOG0623 Glutamine amidotransfe 81.5 2.3 4.9E-05 40.4 4.5 67 64-140 446-513 (541)
403 PRK12738 kbaY tagatose-bisphos 81.5 32 0.00068 31.9 12.1 71 66-145 162-235 (286)
404 PF02310 B12-binding: B12 bind 81.3 5.8 0.00013 30.8 6.3 65 67-144 46-113 (121)
405 PRK04147 N-acetylneuraminate l 81.2 7.9 0.00017 35.6 8.1 77 66-149 31-113 (293)
406 cd03327 MR_like_2 Mandelate ra 80.7 20 0.00043 33.7 10.7 45 96-141 206-251 (341)
407 cd00950 DHDPS Dihydrodipicolin 80.6 9.4 0.0002 34.7 8.3 84 57-149 20-109 (284)
408 TIGR02313 HpaI-NOT-DapA 2,4-di 80.4 18 0.00039 33.3 10.2 109 18-141 45-163 (294)
409 TIGR03569 NeuB_NnaB N-acetylne 80.2 39 0.00085 31.9 12.5 109 3-137 107-218 (329)
410 TIGR00674 dapA dihydrodipicoli 80.1 16 0.00035 33.4 9.7 100 18-133 43-150 (285)
411 cd03326 MR_like_1 Mandelate ra 80.0 28 0.00061 33.5 11.7 39 96-135 240-278 (385)
412 TIGR02534 mucon_cyclo muconate 79.8 24 0.00052 33.5 11.1 44 97-141 223-267 (368)
413 PRK07084 fructose-bisphosphate 79.8 12 0.00025 35.4 8.6 69 66-137 171-242 (321)
414 PRK14017 galactonate dehydrata 79.5 22 0.00047 34.0 10.7 44 97-141 213-257 (382)
415 cd00953 KDG_aldolase KDG (2-ke 79.4 11 0.00024 34.4 8.4 74 66-148 27-104 (279)
416 cd03325 D-galactonate_dehydrat 79.3 20 0.00044 33.8 10.4 45 97-142 212-257 (352)
417 TIGR00683 nanA N-acetylneurami 79.2 9.2 0.0002 35.2 7.8 78 66-150 28-111 (290)
418 PRK15452 putative protease; Pr 79.0 40 0.00087 33.2 12.5 97 26-145 46-144 (443)
419 cd00954 NAL N-Acetylneuraminic 79.0 11 0.00024 34.5 8.3 76 66-149 28-110 (288)
420 cd00954 NAL N-Acetylneuraminic 79.0 25 0.00055 32.1 10.7 101 18-133 46-154 (288)
421 PF01070 FMN_dh: FMN-dependent 78.6 4.1 8.9E-05 38.9 5.4 44 97-142 210-253 (356)
422 TIGR00674 dapA dihydrodipicoli 78.5 12 0.00026 34.2 8.4 82 59-149 20-107 (285)
423 PRK15072 bifunctional D-altron 78.2 27 0.00058 33.7 11.0 94 26-141 190-286 (404)
424 PRK15492 triosephosphate isome 78.0 2.7 5.9E-05 38.4 3.9 39 112-152 211-250 (260)
425 TIGR00419 tim triosephosphate 77.8 1.8 4E-05 38.1 2.6 35 112-146 168-202 (205)
426 cd00950 DHDPS Dihydrodipicolin 77.7 20 0.00044 32.5 9.6 107 18-140 45-160 (284)
427 PF00701 DHDPS: Dihydrodipicol 77.7 14 0.00031 33.7 8.6 76 66-149 29-110 (289)
428 PRK03170 dihydrodipicolinate s 77.5 24 0.00052 32.2 10.1 107 18-140 46-161 (292)
429 TIGR03249 KdgD 5-dehydro-4-deo 77.2 13 0.00028 34.3 8.2 76 65-149 32-113 (296)
430 cd00003 PNPsynthase Pyridoxine 77.2 11 0.00024 33.9 7.3 117 14-150 99-219 (234)
431 PF00121 TIM: Triosephosphate 77.0 2 4.4E-05 38.8 2.7 34 113-147 202-236 (244)
432 PRK14566 triosephosphate isome 77.0 3.1 6.7E-05 38.1 3.9 38 113-152 212-250 (260)
433 cd03318 MLE Muconate Lactonizi 76.6 38 0.00082 32.0 11.4 42 97-139 224-266 (365)
434 cd03322 rpsA The starvation se 76.4 31 0.00068 32.7 10.8 40 100-140 202-242 (361)
435 COG3010 NanE Putative N-acetyl 76.2 29 0.00063 30.8 9.5 102 21-139 48-151 (229)
436 PRK12457 2-dehydro-3-deoxyphos 76.2 12 0.00026 34.6 7.4 84 57-151 32-122 (281)
437 PRK03170 dihydrodipicolinate s 75.9 14 0.00031 33.7 8.1 76 66-149 29-110 (292)
438 PRK05265 pyridoxine 5'-phospha 75.8 15 0.00031 33.2 7.7 116 14-150 102-221 (239)
439 PRK06256 biotin synthase; Vali 75.6 39 0.00085 31.4 11.1 111 24-142 185-300 (336)
440 PRK00311 panB 3-methyl-2-oxobu 75.1 19 0.00041 33.0 8.5 74 24-120 115-203 (264)
441 cd04260 AAK_AKi-DapG-BS AAK_AK 74.7 35 0.00076 30.4 10.1 76 64-141 84-174 (244)
442 PRK05198 2-dehydro-3-deoxyphos 74.7 52 0.0011 30.2 11.1 105 18-141 107-228 (264)
443 COG0135 TrpF Phosphoribosylant 74.4 26 0.00056 31.0 8.9 72 69-151 119-192 (208)
444 TIGR01362 KDO8P_synth 3-deoxy- 74.3 56 0.0012 29.9 11.2 113 17-150 98-227 (258)
445 COG5016 Pyruvate/oxaloacetate 73.9 40 0.00086 33.0 10.5 151 21-188 120-279 (472)
446 PRK13307 bifunctional formalde 73.7 33 0.00072 33.2 10.2 93 30-145 215-309 (391)
447 PF13714 PEP_mutase: Phosphoen 73.6 8.1 0.00017 34.8 5.7 54 25-81 54-107 (238)
448 cd01571 NAPRTase_B Nicotinate 73.6 7.2 0.00016 36.3 5.5 39 112-151 244-282 (302)
449 PTZ00170 D-ribulose-5-phosphat 73.1 23 0.00051 31.4 8.5 97 28-150 52-150 (228)
450 PRK11572 copper homeostasis pr 72.5 51 0.0011 30.0 10.5 94 24-139 102-195 (248)
451 PRK13399 fructose-1,6-bisphosp 72.5 18 0.00039 34.5 7.9 65 66-133 180-246 (347)
452 COG2513 PrpB PEP phosphonomuta 72.5 44 0.00095 31.0 10.2 103 23-144 130-236 (289)
453 TIGR00559 pdxJ pyridoxine 5'-p 72.2 19 0.0004 32.5 7.5 117 14-150 99-220 (237)
454 PRK13397 3-deoxy-7-phosphohept 72.1 22 0.00047 32.4 8.1 82 62-156 32-118 (250)
455 PF03932 CutC: CutC family; I 72.1 47 0.001 29.2 9.9 97 24-142 101-199 (201)
456 PLN03033 2-dehydro-3-deoxyphos 71.6 53 0.0011 30.5 10.4 105 18-141 113-239 (290)
457 PRK00077 eno enolase; Provisio 71.6 78 0.0017 30.9 12.4 68 57-141 263-334 (425)
458 cd00956 Transaldolase_FSA Tran 71.4 67 0.0014 28.2 10.9 85 30-139 41-126 (211)
459 KOG0538 Glycolate oxidase [Ene 71.3 7 0.00015 36.7 4.7 42 99-142 210-251 (363)
460 cd00516 PRTase_typeII Phosphor 71.3 6 0.00013 36.0 4.3 39 112-151 238-276 (281)
461 PF03599 CdhD: CO dehydrogenas 71.2 21 0.00046 34.5 8.1 91 24-141 81-175 (386)
462 PRK15440 L-rhamnonate dehydrat 71.1 49 0.0011 32.0 10.8 93 26-140 192-289 (394)
463 COG4948 L-alanine-DL-glutamate 70.7 39 0.00085 32.0 10.0 44 96-140 223-267 (372)
464 PRK06739 pyruvate kinase; Vali 70.6 10 0.00023 36.2 5.9 65 68-149 174-243 (352)
465 PLN02762 pyruvate kinase compl 70.4 10 0.00022 38.0 6.0 64 68-148 212-281 (509)
466 TIGR03586 PseI pseudaminic aci 70.3 99 0.0021 29.2 12.4 92 3-120 108-200 (327)
467 cd02930 DCR_FMN 2,4-dienoyl-Co 70.2 19 0.00041 34.1 7.6 78 65-147 143-249 (353)
468 PRK01222 N-(5'-phosphoribosyl) 70.0 42 0.00091 29.4 9.3 67 72-150 124-191 (210)
469 PLN02429 triosephosphate isome 69.3 4.1 8.9E-05 38.3 2.8 40 112-152 262-301 (315)
470 cd00308 enolase_like Enolase-s 69.3 74 0.0016 27.8 10.8 91 29-141 81-174 (229)
471 TIGR01163 rpe ribulose-phospha 68.6 57 0.0012 27.7 9.8 47 24-81 40-88 (210)
472 PRK09427 bifunctional indole-3 68.6 16 0.00035 36.1 6.9 74 64-151 75-148 (454)
473 PTZ00066 pyruvate kinase; Prov 68.3 16 0.00034 36.8 6.8 64 68-148 219-286 (513)
474 TIGR00222 panB 3-methyl-2-oxob 68.2 35 0.00076 31.3 8.6 73 27-120 117-202 (263)
475 PLN02765 pyruvate kinase 68.1 14 0.00031 37.1 6.5 63 69-148 217-284 (526)
476 cd04725 OMP_decarboxylase_like 67.7 72 0.0016 27.9 10.3 73 57-150 127-208 (216)
477 cd04735 OYE_like_4_FMN Old yel 67.6 22 0.00048 33.6 7.5 77 65-146 150-259 (353)
478 PRK02714 O-succinylbenzoate sy 67.0 1.1E+02 0.0023 28.5 11.9 41 100-141 205-246 (320)
479 TIGR03249 KdgD 5-dehydro-4-deo 66.2 69 0.0015 29.4 10.3 105 18-139 50-161 (296)
480 cd03313 enolase Enolase: Enola 66.1 1.1E+02 0.0025 29.6 12.2 68 57-141 263-334 (408)
481 cd02068 radical_SAM_B12_BD B12 65.7 23 0.00049 28.0 6.2 62 71-145 38-100 (127)
482 PF01136 Peptidase_U32: Peptid 65.6 46 0.001 29.1 8.7 60 66-145 9-70 (233)
483 cd03323 D-glucarate_dehydratas 65.4 73 0.0016 30.7 10.7 39 100-139 249-288 (395)
484 cd03320 OSBS o-Succinylbenzoat 65.3 58 0.0013 29.3 9.5 30 112-141 175-205 (263)
485 PRK08508 biotin synthase; Prov 65.2 40 0.00086 30.8 8.5 72 57-142 42-119 (279)
486 PF00701 DHDPS: Dihydrodipicol 65.2 87 0.0019 28.4 10.8 94 24-133 52-153 (289)
487 cd00945 Aldolase_Class_I Class 65.1 47 0.001 27.6 8.5 58 64-142 18-85 (201)
488 PRK09722 allulose-6-phosphate 64.9 1E+02 0.0023 27.5 10.9 101 28-146 97-201 (229)
489 PRK03620 5-dehydro-4-deoxygluc 64.7 76 0.0016 29.3 10.3 99 17-132 51-154 (303)
490 TIGR03217 4OH_2_O_val_ald 4-hy 64.5 70 0.0015 30.2 10.2 80 57-144 23-109 (333)
491 TIGR03551 F420_cofH 7,8-dideme 64.5 62 0.0013 30.4 9.8 75 56-140 71-156 (343)
492 cd03317 NAAAR N-acylamino acid 64.3 1E+02 0.0022 28.9 11.3 41 100-141 216-257 (354)
493 TIGR01037 pyrD_sub1_fam dihydr 64.2 1.2E+02 0.0025 27.8 12.5 108 25-142 75-189 (300)
494 PLN02461 Probable pyruvate kin 64.0 16 0.00034 36.8 5.8 63 69-148 204-270 (511)
495 TIGR03849 arch_ComA phosphosul 63.0 47 0.001 30.0 8.2 65 13-82 29-94 (237)
496 PF04898 Glu_syn_central: Glut 62.6 45 0.00098 31.0 8.2 87 57-158 141-232 (287)
497 PF00224 PK: Pyruvate kinase, 62.5 15 0.00033 34.8 5.3 65 67-148 184-252 (348)
498 cd02803 OYE_like_FMN_family Ol 62.0 31 0.00067 31.9 7.2 82 64-149 146-255 (327)
499 PRK07094 biotin synthase; Prov 61.7 65 0.0014 29.7 9.4 75 56-142 71-146 (323)
500 PLN02417 dihydrodipicolinate s 61.6 74 0.0016 29.0 9.6 112 2-133 32-151 (280)
No 1
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-49 Score=371.42 Aligned_cols=221 Identities=28% Similarity=0.495 Sum_probs=187.1
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
||||||+++|++.|. ||+||++|+++.+||+++++++ ++|||||||+||++.+. ...+++++++++|+++|+||+
T Consensus 98 lN~GCP~~~V~~~g~-Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ia~~~~~~g~~~ltVHg 173 (323)
T COG0042 98 LNCGCPSPKVVKGGA-GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALEIARILEDAGADALTVHG 173 (323)
T ss_pred eeCCCChHHhcCCCc-chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHHHHHHHHhcCCCEEEEec
Confidence 899999999998775 9999999999999999999999 49999999999998651 123467788999999999999
Q ss_pred CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhh
Q 023442 81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA 159 (282)
Q Consensus 81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~ 159 (282)
||++++|.+++ +|++|+++++..+++|||+||||+|++|++++++ +||||||||||+++||||| .+++..
T Consensus 174 Rtr~~~y~~~a--------d~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~-~~i~~~ 244 (323)
T COG0042 174 RTRAQGYLGPA--------DWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLF-RQIDYL 244 (323)
T ss_pred ccHHhcCCCcc--------CHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHH-HHHHHh
Confidence 99987777654 4899999998865699999999999999999999 9999999999999999997 665222
Q ss_pred hhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442 160 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 239 (282)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 239 (282)
..|+.. ++++.++++.+.+|++.+.++|| ..++..+|||+.||+++++++++||+.+++. .+..++.+.++.+..+
T Consensus 245 ~~g~~~-~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~~-~~~~~~~~~l~~~~~~ 320 (323)
T COG0042 245 ETGELL-PPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGLPGARELRRALNKA-EDGAEVRRALEAVFEE 320 (323)
T ss_pred hcCCCC-CCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcCccHHHHHHHHhcc-CcHHHHHHHHHHHHhh
Confidence 334432 36788899999999999999998 4689999999999999999999999987543 5666666666555443
No 2
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=4e-49 Score=366.63 Aligned_cols=232 Identities=37% Similarity=0.672 Sum_probs=197.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++++++| |||+||++|+++.+|++++++++++|||||+|+||++.++.+++.+ +++.++++|+++|+||+|
T Consensus 86 lN~GCP~~~v~~~g-~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~-~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 86 LNVGCPSDRVQNGN-FGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCD-FVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred EECCCCHHHhCCCC-eehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHH-HHHHHHHcCCCEEEEeCC
Confidence 79999999998655 6999999999999999999999999999999999987655555554 456788999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~ 161 (282)
|+..+|.++..++.++|.+|+.++++++..++||||+||||+|++|+.++++ ||||||||||++.||||| .+++..+.
T Consensus 164 t~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if-~~~~~~l~ 241 (318)
T TIGR00742 164 KAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL-ANVDREIF 241 (318)
T ss_pred chhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH-HHHHHHhc
Confidence 9766777766777788889999999988766899999999999999999997 999999999999999997 67766555
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Q 023442 162 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241 (282)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (282)
|.+...+++.++++.+++|++.+.++ ..+++.+|||+.||++|+|++++||++++....+..+..+++++.+..++
T Consensus 242 ~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (318)
T TIGR00742 242 NETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLETALETVP 317 (318)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHHHHHHhcc
Confidence 44434467778888888888765443 24789999999999999999999999998765554577799999887765
No 3
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=1.6e-45 Score=343.39 Aligned_cols=222 Identities=22% Similarity=0.303 Sum_probs=187.4
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++|+++|. ||+|+++|+++.+|++++++++++||+||+|.||++.. .+..+ +++.++++|+++|+||+|
T Consensus 96 lN~gCP~~~v~~~g~-Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a~~le~~G~d~i~vh~r 171 (321)
T PRK10415 96 INMGCPAKKVNRKLA-GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IAQLAEDCGIQALTIHGR 171 (321)
T ss_pred EeCCCCHHHHcCCCc-ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HHHHHHHhCCCEEEEecC
Confidence 899999999998886 99999999999999999999999999999999998743 12222 456678999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI 160 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~ 160 (282)
|+......++ +|+.++++++. +++|||+||||.|++|++++++ +|||+||||||+++|||+| .+++...
T Consensus 172 t~~~~~~G~a--------~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if-~~~~~~~ 241 (321)
T PRK10415 172 TRACLFNGEA--------EYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF-REIQHYL 241 (321)
T ss_pred ccccccCCCc--------ChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHH-HHHHHHH
Confidence 8532222112 38888888775 5899999999999999999998 9999999999999999996 6776644
Q ss_pred -hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442 161 -YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 239 (282)
Q Consensus 161 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 239 (282)
.|+..+++++.++++.+++|++.+.++||+ +.++..+|||+.||++++|++++||+++++. ++..++.+++++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~ 319 (321)
T PRK10415 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQEHAPNDQFRRTFNAI-EDASEQLEALEAYFEN 319 (321)
T ss_pred hCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 355444567788889999999999999997 6789999999999999999999999998654 7888888888877643
No 4
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=7.6e-47 Score=350.64 Aligned_cols=217 Identities=26% Similarity=0.434 Sum_probs=159.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++|+++|. ||+||++|+++.+|++++++++++|||||||+||++.. +++.+ +++.++++|+++|+||+|
T Consensus 85 lN~GCP~~~v~~~g~-Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~--~~~~~-~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 85 LNMGCPAPKVTKGGA-GAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP--EETIE-FARILEDAGVSAITVHGR 160 (309)
T ss_dssp EEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C--HHHHH-HHHHHHHTT--EEEEECS
T ss_pred ccCCCCHHHHhcCCc-ChhhhcChHHhhHHHHhhhcccccceEEecccccccch--hHHHH-HHHHhhhcccceEEEecC
Confidence 899999999998875 99999999999999999999999999999999999532 23444 356788999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI 160 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~ 160 (282)
|+.+.+.. +.+|++++++++.. +||||+||||+|++|++++++ +||||||||||++.|||||.+ .....
T Consensus 161 t~~q~~~~--------~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~-~~~~~ 230 (309)
T PF01207_consen 161 TRKQRYKG--------PADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE-IDQIK 230 (309)
T ss_dssp -TTCCCTS-----------HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH-HHCHH
T ss_pred chhhcCCc--------ccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh-hhhhc
Confidence 97654432 34599999988764 699999999999999999999 899999999999999999843 22222
Q ss_pred hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHH
Q 023442 161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234 (282)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~ 234 (282)
.|......+..+.+..+.+|++.+.+++|. ...+..++||+.||++++++++.||+.+++. .+..++.+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~-~~~~e~~~~l~ 302 (309)
T PF01207_consen 231 EGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFKGFPGARKFRRELNKC-KTLEEFLELLE 302 (309)
T ss_dssp HHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH--SHHHHHHHH-
T ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHccCCcHHHHHHHHHhh-CCHHHHhhhhc
Confidence 232222223456677777888888888987 6789999999999999999999999988543 55566666565
No 5
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=5.1e-45 Score=341.55 Aligned_cols=236 Identities=38% Similarity=0.726 Sum_probs=201.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||++++.+ ++|||+|++||+++.+|++++++++++||+||+|+||++.++.+++.+ +++.++++|+++|+||+|
T Consensus 96 lN~gCP~~~v~~-~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~-~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 96 LNVGCPSDRVQN-GRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCD-FVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred EcCCCCHHHccC-CCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHH-HHHHHHHhCCCEEEEcCC
Confidence 899999999875 558999999999999999999999999999999999987655555555 456788999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 161 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~ 161 (282)
+.+.+|.++..++.++|.+|+.++++++..+++|||+||||+|++|++++++ +|||||||||++.|||+| .++...+.
T Consensus 174 t~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~-~~~~~~~~ 251 (333)
T PRK11815 174 KAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLL-AEVDRELF 251 (333)
T ss_pred chhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHH-HHHHHHhc
Confidence 9866777766777889999999999887656899999999999999999998 699999999999999996 77776566
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhh-HHHHHHHHHHHHHhC
Q 023442 162 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT-CKTVKSFLEETIVAI 240 (282)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~ 240 (282)
|.+.+.+++.++++.+++|++.+.+ +|+ .+..+|||+.||++|+|++++||+++++.... ..++ +++++.+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~ 326 (333)
T PRK11815 252 GEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGI-EVLEEALALV 326 (333)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCH-HHHHHHHHhh
Confidence 6654456788999999999987776 454 58999999999999999999999999775433 4455 9999999888
Q ss_pred CCCCCC
Q 023442 241 PDSVLD 246 (282)
Q Consensus 241 ~~~~~~ 246 (282)
++..++
T Consensus 327 ~~~~~~ 332 (333)
T PRK11815 327 EEAALE 332 (333)
T ss_pred hhhhcc
Confidence 877654
No 6
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=7.6e-45 Score=337.28 Aligned_cols=212 Identities=20% Similarity=0.305 Sum_probs=172.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 79 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH 79 (282)
||||||+++|+++|+ ||+|+++|+++.+|+++|++++ ++|||||+|+||++.+.+ .+ ++++++++|+++|+||
T Consensus 94 iN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~---~~-~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 94 LNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK---FE-IADAVQQAGATELVVH 168 (312)
T ss_pred EeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH---HH-HHHHHHhcCCCEEEEC
Confidence 899999999998886 9999999999999999999988 499999999999764333 22 4567899999999999
Q ss_pred cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHh
Q 023442 80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDT 158 (282)
Q Consensus 80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~ 158 (282)
+||+.+ |.+ .++++|+.++++++. .++|||+||||+|++|++++++ +|||+||||||+++||||| ++++.
T Consensus 169 ~Rt~~~-~y~------g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf-~~~~~ 239 (312)
T PRK10550 169 GRTKED-GYR------AEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLS-RVVKY 239 (312)
T ss_pred CCCCcc-CCC------CCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHH-HHhhc
Confidence 999643 221 123469999898875 5899999999999999999998 9999999999999999997 56543
Q ss_pred hhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHH
Q 023442 159 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234 (282)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~ 234 (282)
|.+ .+++.++++.+.+|++.+.+.+++ ..++..||||+.||++++++++++|+++++. ++..++.+.++
T Consensus 240 ---g~~--~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~-~~~~e~~~~~~ 308 (312)
T PRK10550 240 ---NEP--RMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRKEYDEATELFQEIRAL-NNSPDIARAIQ 308 (312)
T ss_pred ---CCC--CCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCHHHHHHHHH
Confidence 432 346677777777787654555554 4578899999999999999999999988543 55555555544
No 7
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-42 Score=319.17 Aligned_cols=245 Identities=31% Similarity=0.426 Sum_probs=191.4
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
|||||| ++++++|+|||.||.+|+++.++|++++..++.|||+|||++.|..++ ++ .+++++++|++.|+||||
T Consensus 104 lNcGCP-q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kT----vd-~ak~~e~aG~~~ltVHGR 177 (358)
T KOG2335|consen 104 LNCGCP-QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKT----VD-YAKMLEDAGVSLLTVHGR 177 (358)
T ss_pred ccCCCC-HHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHH----HH-HHHHHHhCCCcEEEEecc
Confidence 899999 579999999999999999999999999999999999999998665433 33 356789999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI 160 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~ 160 (282)
|+.++|. ..+|++|+.++.+++++++||||+||+|.+++|+.++++ |||||||+|||+|.|||+|..
T Consensus 178 tr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~------ 245 (358)
T KOG2335|consen 178 TREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT------ 245 (358)
T ss_pred cHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc------
Confidence 9988884 236778999999999887899999999999999999999 999999999999999999842
Q ss_pred hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCCh-HHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442 161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG-LFKRKADAAFQTCKTVKSFLEETIVA 239 (282)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~-~~r~~l~~~~~~~~~~~~~~~~~~~~ 239 (282)
.|- . .+..+++++|+++ ..+++|.. ....++.|+...++.+.... .+|+.++. ..++.++.+|+++....
T Consensus 246 ~~~--~-~~~~~~~~~~l~~---~~e~~g~~--~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~-~~~~~~~~~~l~~~~~~ 316 (358)
T KOG2335|consen 246 AGY--G-PTPWGCVEEYLDI---AREFGGLS--SFSLIRHHLFKMLRPLLSIHQDLRRDLAA-LNSCESVIDFLEELVLM 316 (358)
T ss_pred CCC--C-CCHHHHHHHHHHH---HHHcCCCc--hhhHHHHHHHHHHHHHHhhhHHHHHHHhh-ccchhhHHHHHHHHHHH
Confidence 111 1 2224677776544 44566552 35667777777777654433 35666654 47788999999977777
Q ss_pred CCCCCCCCCCccC-------CCCccccccccCCCCCCCCcc
Q 023442 240 IPDSVLDSPIEEA-------PRGREDLFADVHDLLPPPYKA 273 (282)
Q Consensus 240 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 273 (282)
++....+.+.... -.|.+..++......||.+..
T Consensus 317 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~k 357 (358)
T KOG2335|consen 317 VRKRVEDGFGRGVEEITKFITPGPEDSLAAEYRVLPPWRSK 357 (358)
T ss_pred HHhhhccccccCccccccccCCchhhhcccccccCCCcccC
Confidence 7666655544333 237777777777777776653
No 8
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=4.3e-39 Score=299.89 Aligned_cols=221 Identities=23% Similarity=0.427 Sum_probs=181.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++++++++ |+.|+++|+++.+|+++|++.+++||+||+|+||++... ++.+ +++.++++|+++|+||+|
T Consensus 94 lN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~-~a~~l~~~G~d~i~vh~r 169 (319)
T TIGR00737 94 INMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVE-AARIAEDAGAQAVTLHGR 169 (319)
T ss_pred EECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHH-HHHHHHHhCCCEEEEEcc
Confidence 799999999998775 999999999999999999999999999999999976431 2223 355678999999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI 160 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~ 160 (282)
+... +.+ .+..|+.+.++++. .++|||+||||.|++|++++++ +|||+||+|||++.|||+| .+++...
T Consensus 170 ~~~~-~~~-------~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~-~~~~~~~ 239 (319)
T TIGR00737 170 TRAQ-GYS-------GEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLF-RQIEQYL 239 (319)
T ss_pred cccc-cCC-------CchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHH-HHHHHHH
Confidence 8632 221 12348888888775 5799999999999999999997 9999999999999999996 6666544
Q ss_pred h-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHH
Q 023442 161 Y-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV 238 (282)
Q Consensus 161 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~ 238 (282)
. |...++.+..+.++.+.+|++.+.++||+ ..++..+|||+.+|++++++++++|+++.+. .+..++.+++++++.
T Consensus 240 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 240 TTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLKGFPGNAALRQTLNHA-SSFQEVKQLLDDFFE 316 (319)
T ss_pred hCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 3 33333456678888888999988889987 5688999999999999999999999998654 777777777777654
No 9
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=277.81 Aligned_cols=188 Identities=21% Similarity=0.371 Sum_probs=154.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCc-HHHHHHHHHHHHHhCCCCEEEEe
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIH 79 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~-~~e~~~~v~~~le~~Gv~~i~VH 79 (282)
||||||.+-|.++|+ ||+||++|-.+.++++++...+ ++|+|||||.|..+..+ +.+ .+.++..+.|++++|+|
T Consensus 352 lN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~---Li~~i~newg~savTlH 427 (614)
T KOG2333|consen 352 LNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHE---LIPRIVNEWGASAVTLH 427 (614)
T ss_pred ccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHH---HHHHHhhccCcceEEec
Confidence 899999999999998 9999999999999999998887 46999999999887654 333 34556669999999999
Q ss_pred cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHH-cC-CCEEEecHHhhhCCccchhhh
Q 023442 80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~-~g-~DgVmIGRgal~nP~if~~~~ 156 (282)
||.+.+.+...|+ |+||.+++++... +|+|+||||.|++|..+.+. ++ +|+||||||||-.|||| .+|
T Consensus 428 GRSRqQRYTK~An--------WdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIF-tEI 498 (614)
T KOG2333|consen 428 GRSRQQRYTKSAN--------WDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIF-TEI 498 (614)
T ss_pred CchhhhhhhcccC--------hHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHh-hhh
Confidence 9998777664444 8888888876544 99999999999999888877 44 99999999999999997 777
Q ss_pred Hhh-hhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Q 023442 157 DTA-IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 207 (282)
Q Consensus 157 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~ 207 (282)
+.. .+. . ++.+|.++++.|..|+ ++|||++..++...|++++.|+.
T Consensus 499 keqq~wD-~-sSteRldiL~df~nyG---LeHWGSDt~GVetTRRFlLE~lS 545 (614)
T KOG2333|consen 499 KEQQHWD-I-SSTERLDILKDFCNYG---LEHWGSDTKGVETTRRFLLEFLS 545 (614)
T ss_pred hhhhcCC-c-cchHHHHHHHHHHhhh---hhhcCCccccHHHHHHHHHHHHH
Confidence 653 232 2 3346667777666654 89999988999999999987754
No 10
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.97 E-value=1.9e-30 Score=230.84 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=110.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++++++|+ |++|+++|+++.++++++++ .++|||||+|+|+++.+ ..+ +++.++++|+++|+||.+
T Consensus 98 iN~gCP~~~v~~~g~-G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~~~----~a~~l~~aGad~i~Vd~~ 170 (231)
T TIGR00736 98 INAHCRQPEITEIGI-GQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLD-ELI----DALNLVDDGFDGIHVDAM 170 (231)
T ss_pred EECCCCcHHHcCCCC-chhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcch-HHH----HHHHHHHcCCCEEEEeeC
Confidence 799999999998886 99999999999999999995 48999999999986522 222 456789999999999975
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
. .|. +...|+.++++++...++|||+||||+|++|+.+++++|||+||+|||++.+
T Consensus 171 ~---~g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 171 Y---PGK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred C---CCC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 4 332 1235999999887643599999999999999999999999999999999976
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.96 E-value=1.5e-29 Score=226.09 Aligned_cols=129 Identities=23% Similarity=0.340 Sum_probs=107.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+++++++|. |++|+++|+++.+|++++++ +++|||||+|+||+ .+..+ +++.++++|+|.|++|.+
T Consensus 103 lN~gCP~~~v~~~g~-G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~----la~~l~~aG~d~ihv~~~ 174 (233)
T cd02911 103 INAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEE----LARLIEKAGADIIHVDAM 174 (233)
T ss_pred EECCCCcHHHhcCCc-chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHH----HHHHHHHhCCCEEEECcC
Confidence 799999999998886 99999999999999999998 59999999999997 23333 356778999998766543
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~ 156 (282)
. .|. +.+|+.+++++ +++|||+||||+|++|+.+++++|||+|||||+ .|||+| +++
T Consensus 175 ~---~g~---------~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~p~~~-~~~ 231 (233)
T cd02911 175 D---PGN---------HADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SLPENI-EWL 231 (233)
T ss_pred C---CCC---------CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CCchHH-HHh
Confidence 2 221 23477776664 589999999999999999999999999999999 999997 554
No 12
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.94 E-value=1.1e-26 Score=206.07 Aligned_cols=140 Identities=29% Similarity=0.523 Sum_probs=116.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||+|||++.+.+ ++||++++++++++.++++++++.+++||+||+|.||+.. +++.+ +++.+++.|++.|+||+|
T Consensus 86 ln~g~p~~~~~~-~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~-~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 86 LNMGCPSPKVTK-GGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLE-LAKALEDAGASALTVHGR 160 (231)
T ss_pred EeCCCCHHHHhC-CCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHH-HHHHHHHhCCCEEEECCC
Confidence 799999987774 6789999999999999999999999999999999999764 23333 355678899999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~ 156 (282)
+...... ++..|+.+.++++ .+++||++||||.|++|+.++++ +|||+||+||+++.|||+| +.+
T Consensus 161 ~~~~~~~--------~~~~~~~~~~i~~-~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~-~~~ 226 (231)
T cd02801 161 TREQRYS--------GPADWDYIAEIKE-AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLF-REI 226 (231)
T ss_pred CHHHcCC--------CCCCHHHHHHHHh-CCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHH-Hhh
Confidence 8532111 2335888877766 46899999999999999999999 7999999999999999986 443
No 13
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.90 E-value=1.9e-23 Score=193.00 Aligned_cols=135 Identities=24% Similarity=0.377 Sum_probs=106.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||||||+.+ + +|+.++++|+++.++++++++.+++||+||+|.+.+ ++.+ +++.++++|+|+|+||++
T Consensus 124 lN~~cP~~~----~-~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~------~~~~-~a~~l~~~G~d~i~v~nt 191 (300)
T TIGR01037 124 LNLSCPHVK----G-GGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT------DITE-IAKAAEEAGADGLTLINT 191 (300)
T ss_pred EECCCCCCC----C-CccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh------hHHH-HHHHHHHcCCCEEEEEcc
Confidence 799999852 4 599999999999999999999999999999996443 2222 456778999999999965
Q ss_pred Ccc-----c----------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 82 KAL-----L----------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 82 t~~-----~----------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.. . .|.+ +..+.|+.++.++++++. .++|||+||||.|++|+.+++++|||+||+||+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~gg~s---g~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l 267 (300)
T TIGR01037 192 LRGMKIDIKTGKPILANKTGGLS---GPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVY 267 (300)
T ss_pred CCccccccccCceeeCCCCcccc---chhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHh
Confidence 321 0 1111 112233345777777765 58999999999999999999999999999999999
Q ss_pred hCCccc
Q 023442 147 QNPWYT 152 (282)
Q Consensus 147 ~nP~if 152 (282)
.|||+|
T Consensus 268 ~~p~~~ 273 (300)
T TIGR01037 268 YRGFAF 273 (300)
T ss_pred cCchHH
Confidence 999986
No 14
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.90 E-value=1.5e-23 Score=193.80 Aligned_cols=141 Identities=19% Similarity=0.290 Sum_probs=112.6
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--- 78 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--- 78 (282)
||+|||+. +.+++ +|+.|+++|+.+.+|++++++.+++||+||+|.+.+ ++.+ +++.++++|++.|++
T Consensus 132 lN~sCP~~-~~~~~-~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~Gadgi~~~Nt 202 (299)
T cd02940 132 LNFSCPHG-MPERG-MGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNIT---DIRE----IARAAKEGGADGVSAINT 202 (299)
T ss_pred EECCCCCC-CCCCC-CchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCch---hHHH----HHHHHHHcCCCEEEEecc
Confidence 79999996 56566 499999999999999999999999999999997543 2333 345678999999985
Q ss_pred ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
|+|+.. +|.+ ++.+.|..|+.++++.+.. .++|||+||||.|.+|+.+++.+|||+|
T Consensus 203 ~~~~~~id~~~~~~~~~~~~~~~~-gg~s---G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V 278 (299)
T cd02940 203 VNSLMGVDLDGTPPAPGVEGKTTY-GGYS---GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVV 278 (299)
T ss_pred cccccccccccCCccccccCCCCc-Cccc---CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChh
Confidence 444422 2222 1234566799999988764 2799999999999999999999999999
Q ss_pred EecHHhhh-CCccchhhh
Q 023442 140 MVGRAAYQ-NPWYTLGHV 156 (282)
Q Consensus 140 mIGRgal~-nP~if~~~~ 156 (282)
|||||++. .|.+| ..+
T Consensus 279 ~i~ta~~~~g~~~~-~~i 295 (299)
T cd02940 279 QVCTAVMNQGFTIV-DDM 295 (299)
T ss_pred eEceeecccCCcHH-HHH
Confidence 99999988 89986 443
No 15
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.6e-22 Score=187.76 Aligned_cols=215 Identities=18% Similarity=0.278 Sum_probs=151.6
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
+|||||-...++.|. ||+|+.+|+.+..|+.++.+...+|||+|||+ .++.+. +++.+. .+.+.|+.+|+||+|
T Consensus 112 iN~gCpK~fSi~~gm-gaalLt~~dkl~~IL~sLvk~~~vpvtckIR~-L~s~ed---tL~lv~-ri~~tgi~ai~vh~r 185 (477)
T KOG2334|consen 112 INMGCPKEFSIHGGM-GAALLTDPDKLVAILYSLVKGNKVPVTCKIRL-LDSKED---TLKLVK-RICATGIAAITVHCR 185 (477)
T ss_pred ccCCCCCccccccCC-CchhhcCHHHHHHHHHHHHhcCcccceeEEEe-cCCccc---HHHHHH-HHHhcCCceEEEEee
Confidence 799999999997665 99999999999999999999999999999996 444332 233333 456899999999999
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC---HHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 157 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s---~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~ 157 (282)
|....- ..|..-+++++++...+.||||.||++.+ +.|++...+ +|+|+|||+|++..||.+|..
T Consensus 186 t~d~r~--------~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~--- 254 (477)
T KOG2334|consen 186 TRDERN--------QEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFRE--- 254 (477)
T ss_pred ccccCC--------CCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeee---
Confidence 863221 12333566777766555699999999999 788888887 999999999999999999842
Q ss_pred hhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHH-HHHHhhHHHHHHHHHHH
Q 023442 158 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA-DAAFQTCKTVKSFLEET 236 (282)
Q Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l-~~~~~~~~~~~~~~~~~ 236 (282)
.|. .++.++++.|++++...-++||....-+..+. .....+.|..+.+...- ...+.+.-.+.++.+..
T Consensus 255 ---eG~----~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il---~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~ 324 (477)
T KOG2334|consen 255 ---EGC----LSEKEVIREFLRLAVQYDNHYGNTKYCLQRIL---RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATL 324 (477)
T ss_pred ---cCC----chHHHHHHHHHHHHHHHhhcccchhHHHHHHh---hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhh
Confidence 242 45678889999988877788887332222222 22233333322221110 12234555666666666
Q ss_pred HHhCCCC
Q 023442 237 IVAIPDS 243 (282)
Q Consensus 237 ~~~~~~~ 243 (282)
-.+++..
T Consensus 325 ~~el~~~ 331 (477)
T KOG2334|consen 325 KRELDTP 331 (477)
T ss_pred HHhhccc
Confidence 6555433
No 16
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.88 E-value=1.9e-22 Score=194.50 Aligned_cols=141 Identities=20% Similarity=0.276 Sum_probs=113.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--- 78 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--- 78 (282)
||+|||+ ++.+++. |+.++++|+.+.+|++++++.+++||+||+|...++ +.+ +++.++++|+++|++
T Consensus 132 lN~scP~-~~~~~~~-g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~---~~~----~a~~~~~~Gadgi~~~Nt 202 (420)
T PRK08318 132 LNFGCPH-GMSERGM-GSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITD---IRE----PARAAKRGGADAVSLINT 202 (420)
T ss_pred EeCCCCC-CccccCC-cccccCCHHHHHHHHHHHHhccCCcEEEEcCCCccc---HHH----HHHHHHHCCCCEEEEecc
Confidence 8999999 6776664 999999999999999999999999999999964432 333 456778999999993
Q ss_pred ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442 79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH 138 (282)
Q Consensus 79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~Dg 138 (282)
|+|+. .+|.| +..+.|+.|+.++++.+.. .++|||+||||+|.+|+.+++.+|||+
T Consensus 203 ~~~~~~id~~~~~~~p~~~~~~~-~gg~S---G~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~ 278 (420)
T PRK08318 203 INSITGVDLDRMIPMPIVNGKSS-HGGYC---GPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGT 278 (420)
T ss_pred cCccccccccccCCCceecCCCC-ccccc---chhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCCh
Confidence 44432 12332 2345677899999998764 279999999999999999999999999
Q ss_pred EEecHHhhh-CCccchhhh
Q 023442 139 VMVGRAAYQ-NPWYTLGHV 156 (282)
Q Consensus 139 VmIGRgal~-nP~if~~~~ 156 (282)
||||||++. .|.++ ..+
T Consensus 279 Vqi~ta~~~~gp~ii-~~I 296 (420)
T PRK08318 279 VQVCTAAMQYGFRIV-EDM 296 (420)
T ss_pred heeeeeeccCCchhH-HHH
Confidence 999999988 78875 443
No 17
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.86 E-value=1.9e-21 Score=179.46 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=105.7
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhC--CCCEEEE-
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFII- 78 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~--Gv~~i~V- 78 (282)
||+|||+ +. + +..+..+|+.+.+|+++|++.+++||+||+|.+++. .++.+ +++.+.++ |++.|++
T Consensus 125 lN~sCPn--~~--~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~----~~~~~-~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 125 LNLSCPN--VP--G--KPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDP----AQFDT-LAEALNAFACPISFITAT 193 (294)
T ss_pred EECCCCC--CC--C--cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCH----HHHHH-HHHHHhccccCCcEEEEE
Confidence 8999998 22 2 335778999999999999999999999999998753 22333 34556677 9999994
Q ss_pred ---------ec-CCc-cc---CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 79 ---------HS-RKA-LL---NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 79 ---------H~-Rt~-~~---~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
|. |+. .. ++.++..++.+.|..+..++++.+... ++|||+||||.|.+|+.+++.+|||+||+|+
T Consensus 194 Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 194 NTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred ccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 53 221 11 111112223344445566677766543 5999999999999999999999999999999
Q ss_pred Hhhh-CCccchhhhH
Q 023442 144 AAYQ-NPWYTLGHVD 157 (282)
Q Consensus 144 gal~-nP~if~~~~~ 157 (282)
|++. +||+| .++.
T Consensus 274 a~~~~gp~~~-~~i~ 287 (294)
T cd04741 274 ALGKEGPKVF-ARIE 287 (294)
T ss_pred hhhhcCchHH-HHHH
Confidence 9995 99996 4443
No 18
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.86 E-value=2.4e-21 Score=182.42 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=114.0
Q ss_pred ccc--cCC-----chhhc-ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC----CcHHHHHHHHHHHHH
Q 023442 2 PSC--GCP-----SPKVA-GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSS 69 (282)
Q Consensus 2 lN~--GCP-----~~~v~-~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le 69 (282)
||+ ||. ++.+. ++++||++|++|.+++.+|+++|+++++.+++||+|+++++. .+.++..+ +++.++
T Consensus 160 ih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~-~~~~l~ 238 (343)
T cd04734 160 LQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALE-IAARLA 238 (343)
T ss_pred EccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHH-HHHHHH
Confidence 677 764 55454 458999999999999999999999999999999999998763 23556555 567888
Q ss_pred hCC-CCEEEEecCCcccC-CCCc-CCcCCCC-CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHH
Q 023442 70 LSP-TRHFIIHSRKALLN-GISP-AENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA 144 (282)
Q Consensus 70 ~~G-v~~i~VH~Rt~~~~-G~~~-ad~~~i~-~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRg 144 (282)
++| +|+|+||+++.... +... ......+ ...|+.+..+++. .++||++||+|.|+++++++++ ++||+||+||+
T Consensus 239 ~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~ 317 (343)
T cd04734 239 AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRA 317 (343)
T ss_pred hcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHH
Confidence 998 89999986542111 0000 0000111 2236666666554 5899999999999999999999 78999999999
Q ss_pred hhhCCccchhhhH
Q 023442 145 AYQNPWYTLGHVD 157 (282)
Q Consensus 145 al~nP~if~~~~~ 157 (282)
++.|||++ ..+.
T Consensus 318 ~ladP~l~-~k~~ 329 (343)
T cd04734 318 HIADPHLV-AKAR 329 (343)
T ss_pred hHhCccHH-HHHH
Confidence 99999986 5443
No 19
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.85 E-value=6.3e-21 Score=175.05 Aligned_cols=143 Identities=21% Similarity=0.269 Sum_probs=109.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||+|||... . |..++++++++.++++++++.+++||+||++.+++. +++.+ +++.++++|+|+|++|++
T Consensus 130 lN~~cP~~~-----~-~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~----~~~~~-~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 130 LNLSCPNVG-----G-GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL----EDIVE-LAKAAERAGADGLTAINT 198 (289)
T ss_pred EEcCCCCCC-----C-CcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCH----HHHHH-HHHHHHHcCCCEEEEEcc
Confidence 799999831 2 456899999999999999999999999999987653 23333 455678999999999987
Q ss_pred CcccC------------CCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 82 KALLN------------GISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 82 t~~~~------------G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
+.... +.....+..+.+..+++++++++..+ ++|||++|||+|++|+.++++.|||+||+||+++.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 199 ISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred cCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence 53110 00000111223445777888877654 899999999999999999999999999999999999
Q ss_pred -Cccchhhh
Q 023442 149 -PWYTLGHV 156 (282)
Q Consensus 149 -P~if~~~~ 156 (282)
|++| .++
T Consensus 279 GP~~~-~~i 286 (289)
T cd02810 279 GPDVI-RKI 286 (289)
T ss_pred CccHH-HHH
Confidence 9996 444
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.85 E-value=2e-20 Score=173.02 Aligned_cols=135 Identities=21% Similarity=0.361 Sum_probs=107.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||+|||+. . ++ |..+.++++++.+++++|++.+++||+||++...+ ++.+ +++.++++|+|.|+++.+
T Consensus 124 lN~~cP~~---~-~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~------~~~~-~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 124 LNISCPNV---K-HG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT------DIVE-IAKAAEEAGADGLSLINT 191 (301)
T ss_pred EECCCCCC---C-CC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch------hHHH-HHHHHHHcCCCEEEEEcc
Confidence 79999983 2 33 78899999999999999999999999999986432 2222 456778999999998654
Q ss_pred Ccc---------------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 82 KAL---------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 82 t~~---------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.. ..|. .+..+.|..+++++++.+. .++|||++|||.|++|+.++++.|||+||+||+++
T Consensus 192 ~~g~~~~~~~~~~~~~~~~gg~---sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll 267 (301)
T PRK07259 192 LKGMAIDIKTRKPILANVTGGL---SGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANF 267 (301)
T ss_pred ccccccccccCceeecCCcCcc---CCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHh
Confidence 311 0122 1223455678888888765 58999999999999999999999999999999999
Q ss_pred hCCccc
Q 023442 147 QNPWYT 152 (282)
Q Consensus 147 ~nP~if 152 (282)
.+|++|
T Consensus 268 ~~P~~~ 273 (301)
T PRK07259 268 YDPYAF 273 (301)
T ss_pred cCcHHH
Confidence 999986
No 21
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.84 E-value=4e-20 Score=170.48 Aligned_cols=135 Identities=24% Similarity=0.363 Sum_probs=106.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||+. ++. |+.++++|+++.++++++++.+++||+||++...+ +..+ +++.++++|+|.|+++.+
T Consensus 121 lN~~cP~~----~~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 121 LNISCPNV----KGG-GMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT---DIVE----IARAAEEAGADGLTLINT 188 (296)
T ss_pred EECCCCCC----CCC-cccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch---hHHH----HHHHHHHcCCCEEEEECC
Confidence 79999983 233 88899999999999999999999999999986432 2223 345678999999998644
Q ss_pred Ccc---------------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 82 KAL---------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 82 t~~---------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.. ..|.+ ...+.|..+++++++.+. .++|||+||||.|++|+.++++.|||+||+||+++
T Consensus 189 ~~g~~~~~~~~~~~~~~~~gg~s---g~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l 264 (296)
T cd04740 189 LKGMAIDIETRKPILGNVTGGLS---GPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANF 264 (296)
T ss_pred CcccccccccCceeecCCcceec---CcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 311 01221 123345567888887765 48999999999999999999999999999999999
Q ss_pred hCCccc
Q 023442 147 QNPWYT 152 (282)
Q Consensus 147 ~nP~if 152 (282)
.+||+|
T Consensus 265 ~~p~~~ 270 (296)
T cd04740 265 VDPEAF 270 (296)
T ss_pred cChHHH
Confidence 999986
No 22
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.82 E-value=4.4e-20 Score=172.79 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=107.7
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-----ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 76 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-----ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i 76 (282)
||++||+.. |...+++++.+.+++++|++.++ +||+||++.+++. +++. .+++.++++|+|+|
T Consensus 166 lN~scP~~~-------g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~----~~~~-~ia~~l~~aGad~I 233 (327)
T cd04738 166 VNVSSPNTP-------GLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSD----EELE-DIADVALEHGVDGI 233 (327)
T ss_pred EECCCCCCC-------ccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCH----HHHH-HHHHHHHHcCCcEE
Confidence 899999731 33348999999999999999886 9999999987653 2333 34667889999999
Q ss_pred EEecCCccc------------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 77 IIHSRKALL------------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 77 ~VH~Rt~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
++|+|+... .|.+ +..+.+..|+.++++++... ++|||++|||.|++|+.+++.+|||+|||||
T Consensus 234 ~~~n~~~~~~~~~~~~~~~~~gG~s---G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~ 310 (327)
T cd04738 234 IATNTTISRPGLLRSPLANETGGLS---GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYT 310 (327)
T ss_pred EEECCcccccccccccccCCCCccC---ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccH
Confidence 999986321 1221 12233455788888877543 7999999999999999999999999999999
Q ss_pred HhhhC-Cccchhhh
Q 023442 144 AAYQN-PWYTLGHV 156 (282)
Q Consensus 144 gal~n-P~if~~~~ 156 (282)
+++.+ ||+| .++
T Consensus 311 ~~~~~gP~~~-~~i 323 (327)
T cd04738 311 GLVYEGPGLV-KRI 323 (327)
T ss_pred HHHhhCcHHH-HHH
Confidence 99875 9986 444
No 23
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.82 E-value=4e-20 Score=174.18 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=108.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-----ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 76 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-----ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i 76 (282)
||++||..+ + ....++++.+.+|+++|++.++ +||+||++.+++. +++.+ +++.++++|+|+|
T Consensus 175 lN~scP~~~----g---~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~----~~~~~-ia~~l~~~Gadgi 242 (344)
T PRK05286 175 VNISSPNTP----G---LRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSD----EELDD-IADLALEHGIDGV 242 (344)
T ss_pred EEccCCCCC----C---cccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCH----HHHHH-HHHHHHHhCCcEE
Confidence 799999742 2 2348999999999999999987 9999999976553 23332 4667889999999
Q ss_pred EEecCCccc------------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 77 IIHSRKALL------------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 77 ~VH~Rt~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
++|+|+... .|.+ +..+.+..|+.++++.+... ++|||++|||.|++|+.+++..|||+|||||
T Consensus 243 ~~~nt~~~~~~~~~~~~~~~~gg~S---G~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~ 319 (344)
T PRK05286 243 IATNTTLSRDGLKGLPNADEAGGLS---GRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYS 319 (344)
T ss_pred EEeCCccccccccccccCCCCCCcc---cHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHH
Confidence 999987321 1221 12234556888888877533 7999999999999999999999999999999
Q ss_pred Hhhh-CCccchhhh
Q 023442 144 AAYQ-NPWYTLGHV 156 (282)
Q Consensus 144 gal~-nP~if~~~~ 156 (282)
+++. +||+| .++
T Consensus 320 ~~~~~gP~~~-~~i 332 (344)
T PRK05286 320 GLIYEGPGLV-KEI 332 (344)
T ss_pred HHHHhCchHH-HHH
Confidence 9976 59986 443
No 24
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.80 E-value=4.1e-19 Score=166.87 Aligned_cols=149 Identities=12% Similarity=0.140 Sum_probs=112.0
Q ss_pred cccc---------CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCC-CC-CCcHHHHHHHHHHHHHh
Q 023442 2 PSCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-DD-HDSYNQLCDFIYKVSSL 70 (282)
Q Consensus 2 lN~G---------CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~-d~-~~~~~e~~~~v~~~le~ 70 (282)
||+| ||... .+++.||++|++|.+++.||+++|+++++.||++|++..- .. ..+.++..+ +++.+++
T Consensus 161 ih~ahGyLl~qFlSp~~N-~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~-i~~~l~~ 238 (337)
T PRK13523 161 IHGAHGYLINEFLSPLSN-KRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQ-YAKWMKE 238 (337)
T ss_pred EccccchHHHHhcCCccC-CcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHH-HHHHHHH
Confidence 6888 88642 3468899999999999999999999999999999999621 11 123455554 5667889
Q ss_pred CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442 71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP 149 (282)
+|+|+|+||+++... . +.+ ..+...|+...++++ ..++||+++|+|.|+++++++++ .+||+||+||+++.||
T Consensus 239 ~gvD~i~vs~g~~~~-~--~~~--~~~~~~~~~~~~ik~-~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP 312 (337)
T PRK13523 239 QGVDLIDVSSGAVVP-A--RID--VYPGYQVPFAEHIRE-HANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNP 312 (337)
T ss_pred cCCCEEEeCCCCCCC-C--CCC--CCccccHHHHHHHHh-hcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCc
Confidence 999999999986321 0 001 011113555555554 46899999999999999999999 6699999999999999
Q ss_pred ccchhhhHhh
Q 023442 150 WYTLGHVDTA 159 (282)
Q Consensus 150 ~if~~~~~~~ 159 (282)
+++ +.+.+.
T Consensus 313 ~~~-~k~~~~ 321 (337)
T PRK13523 313 YFP-RIAAKE 321 (337)
T ss_pred cHH-HHHHHH
Confidence 985 555543
No 25
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.79 E-value=1e-18 Score=164.24 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=107.4
Q ss_pred ccccC-------Cchhh-cccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEec------CCCCCCCcHHHHHHHHH
Q 023442 2 PSCGC-------PSPKV-AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR------IGVDDHDSYNQLCDFIY 65 (282)
Q Consensus 2 lN~GC-------P~~~v-~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR------~G~d~~~~~~e~~~~v~ 65 (282)
||+|| .+|.. .+++.||++|++|++++.++|++|++++ ++||++|++ .||+ .++.++ ++
T Consensus 168 ih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~----~eea~~-ia 242 (338)
T cd04733 168 IHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFT----EEDALE-VV 242 (338)
T ss_pred EchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCC----HHHHHH-HH
Confidence 78998 33333 3568899999999999999999999998 589999997 3453 334444 56
Q ss_pred HHHHhCCCCEEEEecCCcccCCCC-cCCcC-CC-CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGIS-PAENR-TI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~-~ad~~-~i-~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+.++++|+|+|.||+|+....... ..+.. .. +...++...++++. +++||+++|+|.|+++++++++ .+||+||+
T Consensus 243 ~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 243 EALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 678999999999999874211110 00000 01 11124455566554 6899999999999999999999 67999999
Q ss_pred cHHhhhCCccc
Q 023442 142 GRAAYQNPWYT 152 (282)
Q Consensus 142 GRgal~nP~if 152 (282)
||+++.|||++
T Consensus 322 gR~~iadP~~~ 332 (338)
T cd04733 322 ARPLALEPDLP 332 (338)
T ss_pred ChHhhhCccHH
Confidence 99999999985
No 26
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.76 E-value=9.6e-18 Score=160.13 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=103.1
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecC-----CCCC-----------CCcHHHHHHHHHHHHHhCCCC
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-----GVDD-----------HDSYNQLCDFIYKVSSLSPTR 74 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~-----G~d~-----------~~~~~e~~~~v~~~le~~Gv~ 74 (282)
+++.||++|++|++++.+|+++|++++ ++||++|++. |++. .-+.++..+ +++.++++|+|
T Consensus 189 RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~-~~~~l~~~gvD 267 (382)
T cd02931 189 RTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLK-AAKILEEAGYD 267 (382)
T ss_pred CCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHH-HHHHHHHhCCC
Confidence 457799999999999999999999998 6799999984 2211 113455554 56778899999
Q ss_pred EEEEecCCcccCC-CCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442 75 HFIIHSRKALLNG-ISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 75 ~i~VH~Rt~~~~G-~~~ad~~~i~~~~-~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i 151 (282)
+|+||+++..... ..+.. ..++.. ++.+..+++ ..++||++||+|+++++++++++ .+||+||+||+++.||++
T Consensus 268 ~l~vs~g~~~~~~~~~~~~--~~~~~~~~~~~~~ik~-~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l 344 (382)
T cd02931 268 ALDVDAGSYDAWYWNHPPM--YQKKGMYLPYCKALKE-VVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDV 344 (382)
T ss_pred EEEeCCCCCcccccccCCc--cCCcchhHHHHHHHHH-HCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccH
Confidence 9999988732111 00111 112222 344445544 46899999999999999999999 679999999999999998
Q ss_pred chhhhH
Q 023442 152 TLGHVD 157 (282)
Q Consensus 152 f~~~~~ 157 (282)
+ +.+.
T Consensus 345 ~-~k~~ 349 (382)
T cd02931 345 V-NKIR 349 (382)
T ss_pred H-HHHH
Confidence 6 5443
No 27
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.76 E-value=3.5e-18 Score=161.56 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=107.3
Q ss_pred cCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC----ccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEE
Q 023442 5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHF 76 (282)
Q Consensus 5 GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~----ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i 76 (282)
.||.... +++.||++|++|.+++.||+++|+++++ .++.|++|+++++. .+.++..+ +++.++++|+|+|
T Consensus 175 lsp~~N~-R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~-i~~~L~~~GvD~I 252 (353)
T cd04735 175 FSPHSNR-RTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLA-LVDKLADKGLDYL 252 (353)
T ss_pred cCCccCC-CCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHH-HHHHHHHcCCCEE
Confidence 4886433 4688999999999999999999999987 67888899887653 13556554 5677899999999
Q ss_pred EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhh
Q 023442 77 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 155 (282)
Q Consensus 77 ~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~ 155 (282)
+||+++...... ..++..+..+..+++.. .++|||+||+|+|+++++++++.|||+||+||+++.||+++ ..
T Consensus 253 ~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~-~k 325 (353)
T cd04735 253 HISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWV-EK 325 (353)
T ss_pred EeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHH-HH
Confidence 999764311100 01111234444443332 37999999999999999999998899999999999999985 54
Q ss_pred hH
Q 023442 156 VD 157 (282)
Q Consensus 156 ~~ 157 (282)
+.
T Consensus 326 ~~ 327 (353)
T cd04735 326 IK 327 (353)
T ss_pred HH
Confidence 43
No 28
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.75 E-value=1.6e-17 Score=156.17 Aligned_cols=139 Identities=18% Similarity=0.125 Sum_probs=106.5
Q ss_pred ccccC---------C-chhhcccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCCC-----CCCCcHHHHHHHHH
Q 023442 2 PSCGC---------P-SPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCDFIY 65 (282)
Q Consensus 2 lN~GC---------P-~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~-----d~~~~~~e~~~~v~ 65 (282)
||+|| | .++. ++.||++|.+|.+++.+|+++|+++++. ||++|++..- ....+.++..+ ++
T Consensus 171 ih~ahGyLl~qFlSp~~N~R--~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~-~~ 247 (338)
T cd02933 171 IHGANGYLIDQFLRDGSNKR--TDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSY-LA 247 (338)
T ss_pred EccccchhHHHhcCCccCCC--CCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHH-HH
Confidence 78999 6 4444 4779999999999999999999999854 8999988521 01124456554 56
Q ss_pred HHHHhCCCCEEEE-ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442 66 KVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 143 (282)
Q Consensus 66 ~~le~~Gv~~i~V-H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR 143 (282)
+.+++.|+|+|.| |+++.... +...++...++++. .++||+++|+|+ +++++++++ .+||+||+||
T Consensus 248 ~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR 315 (338)
T cd02933 248 KELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADGKADLVAFGR 315 (338)
T ss_pred HHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCH
Confidence 7889999999999 56543211 12236666666554 689999999997 999999999 6799999999
Q ss_pred HhhhCCccchhhh
Q 023442 144 AAYQNPWYTLGHV 156 (282)
Q Consensus 144 gal~nP~if~~~~ 156 (282)
+++.|||++ ..+
T Consensus 316 ~~ladP~~~-~k~ 327 (338)
T cd02933 316 PFIANPDLV-ERL 327 (338)
T ss_pred hhhhCcCHH-HHH
Confidence 999999985 544
No 29
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.75 E-value=1.7e-17 Score=154.71 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=106.6
Q ss_pred CCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCC--CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~--~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||.-. .+++.||++++++++++.+++++|++.+ ++||+||++.+.... .+.++..+ +++.+++.|+|+|+||++
T Consensus 173 sp~~n-~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~-la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 173 SPYTN-KRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE-IAKALEEAGVDALHVSGG 250 (327)
T ss_pred Ccccc-CCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCC
Confidence 67532 4578899999999999999999999998 789999998642211 13445444 466788999999999988
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
+..............++..++.+..+++. .++||+++|+|.|+++++++++ .+||+|++||+++.||+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~ 321 (327)
T cd02803 251 SYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLP 321 (327)
T ss_pred CCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHH
Confidence 64321110000001123345666666554 5899999999999999999999 6899999999999999985
No 30
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.74 E-value=1.9e-17 Score=156.54 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=105.8
Q ss_pred CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||.. -.+++.||++|+++++++.+|+++|+++++.++.|++|+++.+. .+.++..+ +++.++++|+|+|+|+..
T Consensus 169 sp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~d~i~vs~g 246 (353)
T cd02930 169 APRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGADILNTGIG 246 (353)
T ss_pred CCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCC
Confidence 7752 23467899999999999999999999999888888888876542 24455554 567889999999999532
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 157 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~ 157 (282)
.. ....+......++..|..+.+.+++..++||+++|+|.++++++++++ ++||+||+||+++.|||++ +.+.
T Consensus 247 ~~--e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~-~k~~ 320 (353)
T cd02930 247 WH--EARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFV-AKAA 320 (353)
T ss_pred cC--CCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHH-HHHH
Confidence 10 000000000112223443333334446999999999999999999999 6799999999999999986 5443
No 31
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.73 E-value=2.8e-17 Score=154.39 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=105.1
Q ss_pred ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC-CC-CCCcHHHHHHHHHHHH
Q 023442 2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VD-DHDSYNQLCDFIYKVS 68 (282)
Q Consensus 2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G-~d-~~~~~~e~~~~v~~~l 68 (282)
||+|| |... .+++.||++|++|++++.+++++|++++ ++||++|++.. +. ...+.++..+ +++.+
T Consensus 173 i~~~~gyLl~qFlsp~~N-~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~-ia~~L 250 (336)
T cd02932 173 IHAAHGYLLHQFLSPLSN-KRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE-LAKAL 250 (336)
T ss_pred EccccccHHHHhcCCccC-CCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH-HHHHH
Confidence 78887 6543 3567899999999999999999999999 78999999841 11 1112445444 46678
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCC-CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i-~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal 146 (282)
++.|+|+|.||..... .. ..... +...++...++++. .++||+++|+|.|+++++++++ ..||+||+||+++
T Consensus 251 e~~gvd~iev~~g~~~--~~---~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i 324 (336)
T cd02932 251 KELGVDLIDVSSGGNS--PA---QKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLVALGRELL 324 (336)
T ss_pred HHcCCCEEEECCCCCC--cc---cccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHH
Confidence 8999999999953211 00 00011 11124455556554 5899999999999999999999 5599999999999
Q ss_pred hCCccc
Q 023442 147 QNPWYT 152 (282)
Q Consensus 147 ~nP~if 152 (282)
.||++.
T Consensus 325 ~dP~~~ 330 (336)
T cd02932 325 RNPYWP 330 (336)
T ss_pred hCccHH
Confidence 999975
No 32
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.72 E-value=6e-17 Score=151.56 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=101.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||.. . .+.+|+.+ ++.+.++++++++.+++||+||++..+++ ..+ +++.++++|+++|++|.|
T Consensus 131 lN~s~~~~--~-~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~~~~---~~~----~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 131 LNIYALPT--D-PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPFFSA---LAH----MAKQLDAAGADGLVLFNR 197 (325)
T ss_pred EeCCCCCC--C-CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCCccC---HHH----HHHHHHHcCCCeEEEEcC
Confidence 79999642 1 24456654 57899999999999999999999975432 333 345678999999999998
Q ss_pred Cccc------------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC-
Q 023442 82 KALL------------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN- 148 (282)
Q Consensus 82 t~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n- 148 (282)
+... .|.| +..+.|..+++++++.+. .++|||++|||.|.+|+.+++..|||+||+|++++.+
T Consensus 198 ~~~~~id~~~~~~~~~~glS---G~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g 273 (325)
T cd04739 198 FYQPDIDLETLEVVPNLLLS---SPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHG 273 (325)
T ss_pred cCCCCccccccceecCCCcC---CccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC
Confidence 6210 0111 123344557777777764 5899999999999999999999999999999999985
Q ss_pred Cccc
Q 023442 149 PWYT 152 (282)
Q Consensus 149 P~if 152 (282)
|.++
T Consensus 274 p~~~ 277 (325)
T cd04739 274 PDYI 277 (325)
T ss_pred chHH
Confidence 9875
No 33
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.72 E-value=3.2e-17 Score=155.89 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=107.0
Q ss_pred ccccC---------Cc-hhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC------CcHHHHHHHHH
Q 023442 2 PSCGC---------PS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLCDFIY 65 (282)
Q Consensus 2 lN~GC---------P~-~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~------~~~~e~~~~v~ 65 (282)
||+|| |. ++ +++.||++|++|.+++.||+++|+++++.++.|++|++.++. .+.++..+ ++
T Consensus 169 ih~ahGyLl~QFlSp~~N~--RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~-~~ 245 (370)
T cd02929 169 VYAAHGYLPLQFLLPRYNK--RTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVE-FV 245 (370)
T ss_pred EcccccchHHHhhCccccC--CccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHH-HH
Confidence 78899 65 33 357899999999999999999999999888888889876542 13555554 45
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 143 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~-~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR 143 (282)
+.+++. +|++.|+.......+.. .+..++. .++...++++ ..++||+++|+|.++++++++++ .+||+||+||
T Consensus 246 ~~l~~~-~D~i~vs~g~~~~~~~~---~~~~~~~~~~~~~~~ik~-~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR 320 (370)
T cd02929 246 EMLDEL-PDLWDVNVGDWANDGED---SRFYPEGHQEPYIKFVKQ-VTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAAR 320 (370)
T ss_pred HHHHhh-CCEEEecCCCccccccc---cccCCccccHHHHHHHHH-HCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeech
Confidence 566654 89999986432111110 0111111 2444555555 46899999999999999999999 6799999999
Q ss_pred HhhhCCccchhhhH
Q 023442 144 AAYQNPWYTLGHVD 157 (282)
Q Consensus 144 gal~nP~if~~~~~ 157 (282)
+++.|||++ ..++
T Consensus 321 ~~ladP~l~-~k~~ 333 (370)
T cd02929 321 PSIADPFLP-KKIR 333 (370)
T ss_pred HhhhCchHH-HHHH
Confidence 999999986 5443
No 34
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.72 E-value=5.9e-17 Score=167.02 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=109.4
Q ss_pred cccc---------CCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecC-CCCCC-CcHHHHHHHHHHHH
Q 023442 2 PSCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-GVDDH-DSYNQLCDFIYKVS 68 (282)
Q Consensus 2 lN~G---------CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~-G~d~~-~~~~e~~~~v~~~l 68 (282)
||+| ||.... +++.||++|+++.+++.||+++|++++ ++||++|++. +|.+. .+.++... +++.+
T Consensus 570 ih~ahGyLl~qFlsp~~N~-RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~-~~~~l 647 (765)
T PRK08255 570 LHCAHGYLLSSFISPLTNQ-RTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVE-IARAF 647 (765)
T ss_pred EecccchHHHHhcCCCCCC-CCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHH-HHHHH
Confidence 7888 998543 468899999999999999999999987 5899999996 34432 23455554 56788
Q ss_pred HhCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442 69 SLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal 146 (282)
+++|+|+|+||+ ++.... .+ ..++..+..+.+.+++..++||++||+|+++++++++++ ++||+||+||+++
T Consensus 648 ~~~g~d~i~vs~g~~~~~~--~~----~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l 721 (765)
T PRK08255 648 KAAGADLIDVSSGQVSKDE--KP----VYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHL 721 (765)
T ss_pred HhcCCcEEEeCCCCCCcCC--CC----CcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence 999999999994 442111 00 011111222223334446899999999999999999999 7899999999999
Q ss_pred hCCccchhhhHh
Q 023442 147 QNPWYTLGHVDT 158 (282)
Q Consensus 147 ~nP~if~~~~~~ 158 (282)
.||++.++.+++
T Consensus 722 ~dP~~~~~~~~~ 733 (765)
T PRK08255 722 ADPAWTLHEAAE 733 (765)
T ss_pred hCccHHHHHHHH
Confidence 999544455544
No 35
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.71 E-value=6.2e-17 Score=145.48 Aligned_cols=130 Identities=15% Similarity=0.337 Sum_probs=101.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccE---EEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 76 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipv---svKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i 76 (282)
|++||. +++ .|++++++|+++.++++.+.+.+ ++++ .+|++ ||++.. .+..+ +++.+++.|++.|
T Consensus 94 l~~Ga~--kvv----iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~-~~~~l~~~G~~~i 163 (241)
T PRK14024 94 LATGCA--RVN----IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWE-VLERLDSAGCSRY 163 (241)
T ss_pred HHCCCC--EEE----ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHH-HHHHHHhcCCCEE
Confidence 678885 454 49999999999999999997765 4566 67775 898632 12233 3456789999999
Q ss_pred EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEecHHhhhCCcc
Q 023442 77 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 77 ~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIGRgal~nP~i 151 (282)
++|+|++..++.. . +|+.+.++++. .++|||+||||.|++|+.++.+ +||||||+||+++.++.-
T Consensus 164 iv~~~~~~g~~~G-~--------d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 164 VVTDVTKDGTLTG-P--------NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred EEEeecCCCCccC-C--------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 9999986432221 1 48888888775 5899999999999999999864 699999999999999864
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.70 E-value=2.2e-16 Score=148.24 Aligned_cols=134 Identities=15% Similarity=0.137 Sum_probs=100.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||..+. +..|.. .++.+.++++++++.+++||+||++.++++ ..+ +++.++++|+|+|++|.|
T Consensus 133 lN~scpp~~~---~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~~~~---~~~----~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 133 LNIYYLPTDP---DISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPYFSN---LAN----MAKRLDAAGADGLVLFNR 199 (334)
T ss_pred EeCCCCCCCC---CCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCCchh---HHH----HHHHHHHcCCCeEEEECC
Confidence 7999975432 223443 356788999999999999999999976532 222 456778999999999988
Q ss_pred Cccc------------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC-
Q 023442 82 KALL------------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN- 148 (282)
Q Consensus 82 t~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n- 148 (282)
+... .|.+ +..+.|..++.++++.+. .++|||++|||+|.+|+.+++.+|||+|||||+++.+
T Consensus 200 ~~~~~~d~~~~~~~~~~gls---g~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g 275 (334)
T PRK07565 200 FYQPDIDLETLEVVPGLVLS---TPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG 275 (334)
T ss_pred cCCCCcChhhcccccCCCCC---CchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence 5210 0111 122345556777777664 4899999999999999999999999999999999985
Q ss_pred Cccc
Q 023442 149 PWYT 152 (282)
Q Consensus 149 P~if 152 (282)
|.++
T Consensus 276 ~~~~ 279 (334)
T PRK07565 276 PDYI 279 (334)
T ss_pred cHHH
Confidence 8764
No 37
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.69 E-value=2.3e-16 Score=149.38 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=105.7
Q ss_pred ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCC--C-----CCcHHHHHHH
Q 023442 2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--D-----HDSYNQLCDF 63 (282)
Q Consensus 2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d--~-----~~~~~e~~~~ 63 (282)
||++| |.... +++.||++|.+|.+++.||+++|++++ ++||.||++. |+ + ..+.+++..
T Consensus 163 ih~ahGyLl~qFLSp~~N~-RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~- 239 (361)
T cd04747 163 LHGAHGYLIDQFFWAGTNR-RADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEA- 239 (361)
T ss_pred EecccchHHHHhcCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHH-
Confidence 78899 77544 468899999999999999999999998 5899999983 32 1 124556554
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC------------------CCH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NTV 125 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI------------------~s~ 125 (282)
+++.+++.|+|+|.|..+....... +...+.....+++ ..++||+++|+| +|+
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~~~~~--------~~~~~~~~~~~k~-~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFWEPEF--------EGSELNLAGWTKK-LTGLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred HHHHHHHcCCCEEEecCCCccCCCc--------CccchhHHHHHHH-HcCCCEEEECCcccccccccccccccccccCCH
Confidence 4567889999998776542110000 1112444444444 468999999999 699
Q ss_pred HHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442 126 DEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 157 (282)
Q Consensus 126 eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~ 157 (282)
++++++++ .+||+||+||+++.|||++ ..+.
T Consensus 311 ~~a~~~l~~g~~D~V~~gR~~iadP~~~-~k~~ 342 (361)
T cd04747 311 DRLLERLERGEFDLVAVGRALLSDPAWV-AKVR 342 (361)
T ss_pred HHHHHHHHCCCCCeehhhHHHHhCcHHH-HHHH
Confidence 99999999 6799999999999999985 5543
No 38
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.62 E-value=3.7e-15 Score=141.93 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=106.1
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||.....+ +. |+.+.++|+.+.+++++|++.+++||.||+...+++ +. .+++.++++|++.|++..+
T Consensus 146 LNiSCPn~~~~r-~~-g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~---i~----~ia~aa~~~Gadgi~liNT 216 (385)
T PLN02495 146 INFSCPHGMPER-KM-GAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITD---IT----QPARVALKSGCEGVAAINT 216 (385)
T ss_pred EECCCCCCCCcC-cc-chhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhh---HH----HHHHHHHHhCCCEEEEecc
Confidence 799999965443 43 899999999999999999999999999999864432 32 3456778999999998754
Q ss_pred Ccc------cC-----------CCCcCCcCCCCCccHHHHHHHHhcCC-----CceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 82 KAL------LN-----------GISPAENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 82 t~~------~~-----------G~~~ad~~~i~~~~~~~i~~l~~~~~-----~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
+.. .. +.+.--+..++|+....++++.+... ++|||+.|||.|.+|+.+++..||+.|
T Consensus 217 ~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~V 296 (385)
T PLN02495 217 IMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTV 296 (385)
T ss_pred cCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCce
Confidence 320 00 11111112344555555555655421 599999999999999999999999999
Q ss_pred EecHHhhhC-Cccc
Q 023442 140 MVGRAAYQN-PWYT 152 (282)
Q Consensus 140 mIGRgal~n-P~if 152 (282)
+++.+++.+ |.++
T Consensus 297 Qv~Ta~~~~Gp~vi 310 (385)
T PLN02495 297 QVCTGVMMHGYPLV 310 (385)
T ss_pred eEeeeeeecCcHHH
Confidence 999999988 8875
No 39
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.61 E-value=6.4e-15 Score=136.12 Aligned_cols=135 Identities=24% Similarity=0.348 Sum_probs=108.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec-
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS- 80 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~- 80 (282)
||.+||. + +| |..|-++|+.+.++++++++.+++||.||+-.. ..++.+ +++.++++|+|.|++.-
T Consensus 129 lNiScPn---t-~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~------~~di~~-iA~~~~~~g~Dgl~~~NT 195 (310)
T COG0167 129 LNISCPN---T-PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLAPN------ITDIDE-IAKAAEEAGADGLIAINT 195 (310)
T ss_pred EEccCCC---C-CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeCCC------HHHHHH-HHHHHHHcCCcEEEEEee
Confidence 7999998 2 23 788888999999999999999999999999862 223333 56678899999999863
Q ss_pred ---CCc------------ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 81 ---RKA------------LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 81 ---Rt~------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
|.. ...|.| +..+.|.....++++.++. .++|||+.|||.|++||.+++..||+.|.|+.+
T Consensus 196 ~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta 272 (310)
T COG0167 196 TKSGMKIDLETKKPVLANETGGLS---GPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTA 272 (310)
T ss_pred ccccccccccccccccCcCCCCcC---cccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeee
Confidence 221 122332 3467777788888888763 359999999999999999999999999999999
Q ss_pred hhhC-Cccc
Q 023442 145 AYQN-PWYT 152 (282)
Q Consensus 145 al~n-P~if 152 (282)
++.+ |++|
T Consensus 273 l~~~Gp~i~ 281 (310)
T COG0167 273 LIYKGPGIV 281 (310)
T ss_pred eeeeCchHH
Confidence 9988 9996
No 40
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.57 E-value=1.8e-14 Score=133.35 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=95.8
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||+|||++... ...++++++++.+++||++|.... . +. ++.++++|+|.|+||++
T Consensus 148 l~~~~p~~~~~--------------~~~~~i~~l~~~~~~pvivK~v~s------~-~~----a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 148 LTVDTPVLGRR--------------LTWDDLAWLRSQWKGPLILKGILT------P-ED----ALRAVDAGADGIVVSNH 202 (299)
T ss_pred EecCCCCCCCC--------------CCHHHHHHHHHhcCCCEEEeecCC------H-HH----HHHHHHCCCCEEEEcCC
Confidence 79999974221 234678888888899999997521 2 21 34567899999999765
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhh
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 160 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~ 160 (282)
.+.... + .+..|+.+.++++... ++|||++|||+|..|+.+++..|||+||+|| ||++ ....
T Consensus 203 gG~~~~-----~---g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~-----~~l~-~~~~--- 265 (299)
T cd02809 203 GGRQLD-----G---APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR-----PFLY-GLAA--- 265 (299)
T ss_pred CCCCCC-----C---CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH-----HHHH-HHHh---
Confidence 422111 1 1224788888876543 6999999999999999999999999999999 5654 2211
Q ss_pred hCCCCCcccHHHHHHHHHHHHHHHHHhcCC
Q 023442 161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGN 190 (282)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 190 (282)
.|. ....+.++.+.+.++.+...+|.
T Consensus 266 ~g~----~~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 266 GGE----AGVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred cCH----HHHHHHHHHHHHHHHHHHHHHCC
Confidence 121 12234555555555555555553
No 41
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.55 E-value=2e-14 Score=130.54 Aligned_cols=142 Identities=24% Similarity=0.293 Sum_probs=94.0
Q ss_pred CccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCC---------------CCCC---cHHHHHH
Q 023442 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV---------------DDHD---SYNQLCD 62 (282)
Q Consensus 1 ~lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~---------------d~~~---~~~e~~~ 62 (282)
|+|.|||++.+. +| |+++|++|+.+. +|++++++||+.|+|.|+ |.++ ...++..
T Consensus 42 ~~~~~~psd~~~-~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~ 114 (293)
T PRK04180 42 MALERVPADIRA-AG--GVARMADPKMIE----EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYH 114 (293)
T ss_pred HHccCCCchHhh-cC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHH
Confidence 689999999876 44 899999999966 667777999999999873 0000 0111111
Q ss_pred HHH-----------------HHHHhCCCCEEEEec--------------CC-----cccCCCCcCC---cCCCCCccHHH
Q 023442 63 FIY-----------------KVSSLSPTRHFIIHS--------------RK-----ALLNGISPAE---NRTIPPLKYEY 103 (282)
Q Consensus 63 ~v~-----------------~~le~~Gv~~i~VH~--------------Rt-----~~~~G~~~ad---~~~i~~~~~~~ 103 (282)
.+. ....+.|+++|.-+| |+ +...|.++.. +.......|+.
T Consensus 115 ~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el 194 (293)
T PRK04180 115 IDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL 194 (293)
T ss_pred HHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH
Confidence 110 012345666665441 11 0123332211 01112345888
Q ss_pred HHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 104 YYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 104 i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+.++++. .++||+ +.|||.|++|+..+++.|||+|++|++++..+.
T Consensus 195 L~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 195 VKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence 8888875 479998 999999999999999999999999999985443
No 42
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.53 E-value=7.7e-14 Score=129.84 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=100.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec-
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS- 80 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~- 80 (282)
||++||+ +. + |..+-.+++.+.+++++|++.+++||.||+....+. .++++ ++..+.+.|++.|..-.
T Consensus 125 lN~ScPn--~~--~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~----~~~a~-~~~~~~~~g~~~i~~~nt 193 (310)
T PRK02506 125 LNLSCPN--VP--G--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI----VHFDQ-AAAIFNKFPLAFVNCINS 193 (310)
T ss_pred EECCCCC--CC--C--ccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH----HHHHH-HHHHhCcCceEEEEEecc
Confidence 7999997 32 2 445566899999999999999999999999976532 23333 22334456776654322
Q ss_pred ------------CCcc--cCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 81 ------------RKAL--LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 81 ------------Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
+... ..+.++-.++.+.|+....++++.+.. .++|||++|||.|.+|+.+++..|||+||++.++
T Consensus 194 ~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~ 273 (310)
T PRK02506 194 IGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTAL 273 (310)
T ss_pred CCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHH
Confidence 1110 111112233556777777888887764 3799999999999999999999999999999999
Q ss_pred hh-CCccc
Q 023442 146 YQ-NPWYT 152 (282)
Q Consensus 146 l~-nP~if 152 (282)
+. +|.+|
T Consensus 274 ~~~gp~~~ 281 (310)
T PRK02506 274 HKEGPAVF 281 (310)
T ss_pred HHhChHHH
Confidence 87 79986
No 43
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.51 E-value=4.9e-14 Score=132.46 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=103.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-------ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 74 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-------ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~ 74 (282)
||.+||.- . |...+.+++.+.+++++|++.++ +||.||+...+++ +.+.+ +++.++++|+|
T Consensus 172 lNlScPn~--~-----~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~----ia~~~~~~Gad 239 (335)
T TIGR01036 172 VNVSSPNT--P-----GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTE-SDLED----IADSLVELGID 239 (335)
T ss_pred EEccCCCC--C-----CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCc
Confidence 79999983 2 33446899999999999998876 9999999876543 12322 45667899999
Q ss_pred EEEEecCCc------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 75 HFIIHSRKA------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 75 ~i~VH~Rt~------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
.|++..++. .+.|.| +..+.|.....++++.+... ++|||+.|||.|++|+.+++..|||.|++
T Consensus 240 Gi~l~NT~~~~~~~~~~~~~~~~GGlS---G~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 240 GVIATNTTVSRSLVQGPKNSDETGGLS---GKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI 316 (335)
T ss_pred EEEEECCCCccccccCccccCCCCccc---CHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence 999875432 112222 22344555667777766543 69999999999999999999999999999
Q ss_pred cHHhhh-CCccchhhh
Q 023442 142 GRAAYQ-NPWYTLGHV 156 (282)
Q Consensus 142 GRgal~-nP~if~~~~ 156 (282)
|++++. +|.++ ..+
T Consensus 317 ~ta~~~~Gp~~~-~~i 331 (335)
T TIGR01036 317 YSGFIYWGPPLV-KEI 331 (335)
T ss_pred hHHHHHhCchHH-HHH
Confidence 999977 59975 444
No 44
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.50 E-value=1.4e-13 Score=122.39 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=93.6
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCC--CcHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDH--DSYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~--~~~~e~~~~v~~~le~~Gv 73 (282)
+++|| .+|+ .|++++.+|+++.++++.+.+.+ .+++.+| .||.+. .+..+ +++.+++.|+
T Consensus 93 ~~~Ga--~~vi----lg~~~l~~~~~l~ei~~~~~~~i--~vsid~k~~~v~~~g~~~~~~~~~~e----~~~~~~~~g~ 160 (233)
T PRK00748 93 LDAGV--SRVI----IGTAAVKNPELVKEACKKFPGKI--VVGLDARDGKVATDGWLETSGVTAED----LAKRFEDAGV 160 (233)
T ss_pred HHcCC--CEEE----ECchHHhCHHHHHHHHHHhCCCc--eeeeeccCCEEEEccCeecCCCCHHH----HHHHHHhcCC
Confidence 46777 4465 69999999999999999986654 4454444 366432 22333 3456788999
Q ss_pred CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442 74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP 149 (282)
+.|.+|.+++..+... . +|+.+.++++. .++|||+||||.|++|++++++ +||||||+||+++..-
T Consensus 161 ~~ii~~~~~~~g~~~G-~--------d~~~i~~l~~~-~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 161 KAIIYTDISRDGTLSG-P--------NVEATRELAAA-VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred CEEEEeeecCcCCcCC-C--------CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence 9999998875322221 1 38888888775 5799999999999999999999 5599999999997663
No 45
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.50 E-value=3.1e-13 Score=128.00 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=97.6
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCC--ccEEEEecCC-C-CC-CCcHHHHHHHHHHHHHhCC-CCEEEEecCCcccC
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG-V-DD-HDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLN 86 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~--ipvsvKiR~G-~-d~-~~~~~e~~~~v~~~le~~G-v~~i~VH~Rt~~~~ 86 (282)
++|.||+++.+|.+++.||+++|+++++ .||.+++... | ++ ..+.++..+ +++.+++.| +|.|.+..-...-.
T Consensus 187 RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~-la~~L~~~G~~d~i~vs~~~~~~~ 265 (363)
T COG1902 187 RTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE-LAKALEEAGLVDYIHVSEGGYERG 265 (363)
T ss_pred CCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH-HHHHHHhcCCccEEEeecccccCC
Confidence 6789999999999999999999999995 4677766541 2 11 123455544 677889999 79999986432111
Q ss_pred CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccchhhh
Q 023442 87 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 87 G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if~~~~ 156 (282)
+. ..... +.....+.+..+....+|||++|+|++++.++++++. +||.|.+||+++.||.+. ..+
T Consensus 266 ~~---~~~~~-~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~-~k~ 331 (363)
T COG1902 266 GT---ITVSG-PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLV-LKA 331 (363)
T ss_pred CC---ccccc-cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHH-HHH
Confidence 10 00000 1122233333343457999999999999999999995 499999999999999974 443
No 46
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.43 E-value=3.7e-13 Score=124.25 Aligned_cols=141 Identities=21% Similarity=0.347 Sum_probs=99.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||.-. + |..+-.+++...++++.+++.+++||.||+....++. .. ... +..+.+.|++.|+...+
T Consensus 130 lN~ScPn~~----~--~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~---~~-~~~-~~~~~~~g~~gi~~~Nt 198 (295)
T PF01180_consen 130 LNLSCPNVP----G--GRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDI---EP-FAI-AAELAADGADGIVAINT 198 (295)
T ss_dssp EESTSTTST----T--SGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCH---HH-HHH-HHHHHTHTECEEEE---
T ss_pred EEeeccCCC----C--ccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCch---HH-HHH-HHHhhccceeEEEEecC
Confidence 799999732 2 5567788999999999999999999999998654442 11 112 22344789999984322
Q ss_pred ----------Cc--c----cCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 82 ----------KA--L----LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 82 ----------t~--~----~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
+. . ..|.| +..+.|+...+++++.+... ++|||++|||.|.+|+.+++..|||.|+++.+
T Consensus 199 ~~~~~~id~~~~~~~~~~~~gGlS---G~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sa 275 (295)
T PF01180_consen 199 FGQGDAIDLETRRPVLGNGFGGLS---GPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSA 275 (295)
T ss_dssp EEEEE-EETTTTEESSSGGEEEEE---EGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHH
T ss_pred ccCcccccchhcceeeccccCCcC---chhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechh
Confidence 11 0 11222 23445566777888877653 59999999999999999999999999999999
Q ss_pred h-hhCCccchhhhH
Q 023442 145 A-YQNPWYTLGHVD 157 (282)
Q Consensus 145 a-l~nP~if~~~~~ 157 (282)
+ +.+|+++ .++.
T Consensus 276 l~~~Gp~~~-~~i~ 288 (295)
T PF01180_consen 276 LIYRGPGVI-RRIN 288 (295)
T ss_dssp HHHHGTTHH-HHHH
T ss_pred hhhcCcHHH-HHHH
Confidence 9 7789985 4443
No 47
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.42 E-value=1.7e-12 Score=115.38 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=94.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD--SYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~--~~~e~~~~v~~~le~~Gv 73 (282)
+++|| .+|+ .|+.++++|+.+.++++++... .+.+++++| .||.+.. +..+ +++.+++.|+
T Consensus 91 ~~~Ga--~~vv----lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~----~~~~~~~~g~ 159 (230)
T TIGR00007 91 LDLGV--DRVI----IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVAVKGWLEKSEVSLEE----LAKRLEELGL 159 (230)
T ss_pred HHcCC--CEEE----EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEcCCcccCCCCHHH----HHHHHHhCCC
Confidence 45666 4465 4888999999999999998522 245666666 4566532 2223 3445678999
Q ss_pred CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
+.+++|.+++..... ..+|+.+.++.+. .++||+++|||.|.+|+++++++||||||+|++++.+-
T Consensus 160 ~~ii~~~~~~~g~~~---------g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~ 225 (230)
T TIGR00007 160 EGIIYTDISRDGTLS---------GPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGK 225 (230)
T ss_pred CEEEEEeecCCCCcC---------CCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 999999887532211 1248888888765 68999999999999999998889999999999998873
No 48
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.42 E-value=9.2e-13 Score=117.14 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=93.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCC--CcHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDH--DSYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~--~~~~e~~~~v~~~le~~Gv 73 (282)
++.|| .+|+ .|+.++.+|+++.++++.+.+. .+.+++++| .||... .+..++ ++.+++.|+
T Consensus 92 ~~~Ga--d~vv----igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ga 160 (234)
T cd04732 92 LDLGV--SRVI----IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVATKGWLETSEVSLEEL----AKRFEELGV 160 (234)
T ss_pred HHcCC--CEEE----ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEECCCeeecCCCHHHH----HHHHHHcCC
Confidence 45565 4555 5889999999999999987642 233343333 245321 223333 345678999
Q ss_pred CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.+++|.+++..... ..+|+.+.++++. .++||+++|||.|.+|+.++++.||||||+||+++.++.-
T Consensus 161 ~~iii~~~~~~g~~~---------g~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~~~ 228 (234)
T cd04732 161 KAIIYTDISRDGTLS---------GPNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGKIT 228 (234)
T ss_pred CEEEEEeecCCCccC---------CCCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence 999999876431111 1238888888764 5899999999999999999999999999999999999853
No 49
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.42 E-value=1.5e-12 Score=116.81 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=87.5
Q ss_pred ccccccCCHHHHHHHHHHHhh-cCCccEEEE----------ecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442 17 FGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK----------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 85 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~-~~~ipvsvK----------iR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~ 85 (282)
.|++++.+|+.+.++++.+.+ .+-+++.+| +|.+++... .+..+ +++.+++.|++.|++|+++..
T Consensus 99 ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~--~~~~~-~~~~l~~~G~d~i~v~~i~~~- 174 (243)
T cd04731 99 INSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG--LDAVE-WAKEVEELGAGEILLTSMDRD- 174 (243)
T ss_pred ECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC--CCHHH-HHHHHHHCCCCEEEEeccCCC-
Confidence 488899999999999999853 344445444 443333321 12222 345678999999999998752
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442 86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP 149 (282)
|.. ...+|+.+.++++. .++|||++|||+|++|+.++++ +|||+||+||+++..-
T Consensus 175 -g~~-------~g~~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 175 -GTK-------KGYDLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred -CCC-------CCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 211 11248888888764 5899999999999999999999 7999999999986654
No 50
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.42 E-value=1.1e-12 Score=118.99 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=93.7
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC-----------CCCC--CcHHHHHHHHHHHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----------VDDH--DSYNQLCDFIYKVS 68 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G-----------~d~~--~~~~e~~~~v~~~l 68 (282)
++.|| .+|+ .|++++.+|+++.++++.+.+. .+++++++|.| |.+. ....+ +++.+
T Consensus 93 ~~~G~--~~vv----igs~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e----~~~~~ 161 (258)
T PRK01033 93 FSLGV--EKVS----INTAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLE----LAKEY 161 (258)
T ss_pred HHCCC--CEEE----EChHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHH----HHHHH
Confidence 34555 3454 4788999999999999998533 37888888866 2121 12323 34567
Q ss_pred HhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442 69 SLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 145 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga 145 (282)
++.|++.+++|++++ .++|. +|+.+.++++. +++|||++|||.|.+|+.++++ +|||||++|+++
T Consensus 162 ~~~g~~~ii~~~i~~~G~~~G~-----------d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 162 EALGAGEILLNSIDRDGTMKGY-----------DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred HHcCCCEEEEEccCCCCCcCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence 899999999998875 44442 38888888765 6899999999999999999995 999999999887
Q ss_pred hhC
Q 023442 146 YQN 148 (282)
Q Consensus 146 l~n 148 (282)
.-.
T Consensus 230 ~~~ 232 (258)
T PRK01033 230 VFK 232 (258)
T ss_pred eeC
Confidence 543
No 51
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.40 E-value=2.3e-12 Score=116.44 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=93.6
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHh-----hcCC-------ccEEEEecCCCCCCC-cHHHHHHHHHHHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-----ANTN-------VPVSVKCRIGVDDHD-SYNQLCDFIYKVS 68 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~-----~~~~-------ipvsvKiR~G~d~~~-~~~e~~~~v~~~l 68 (282)
++.|| ..|. .|+.++.+|+++.++.+.+. -.++ .|++||+|.+++... +..+. .+.+
T Consensus 93 l~~Ga--~~Vi----igt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~ 162 (253)
T PRK02083 93 LRAGA--DKVS----INSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW----AKEV 162 (253)
T ss_pred HHcCC--CEEE----EChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH----HHHH
Confidence 45666 3454 58899999999999999873 1223 467999997665432 23232 3456
Q ss_pred HhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442 69 SLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 145 (282)
Q Consensus 69 e~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga 145 (282)
++.|++.+++|. |....+|. +|+.+.++.+. .++|||++|||.|.+|+.++++ +|||+||+|+++
T Consensus 163 ~~~g~~~ii~~~i~~~g~~~g~-----------d~~~i~~~~~~-~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 163 EELGAGEILLTSMDRDGTKNGY-----------DLELTRAVSDA-VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHcCCCEEEEcCCcCCCCCCCc-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 789999999986 54444443 38888888765 5899999999999999999998 899999999988
Q ss_pred hhC
Q 023442 146 YQN 148 (282)
Q Consensus 146 l~n 148 (282)
+..
T Consensus 231 ~~~ 233 (253)
T PRK02083 231 HFG 233 (253)
T ss_pred HcC
Confidence 755
No 52
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.38 E-value=5.4e-12 Score=112.94 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=95.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD--SYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~--~~~e~~~~v~~~le~~Gv 73 (282)
+..|| .+|+ .|+.++++|+++.++++.+... .+.+++.++ .||++.. +..++ ++.+++.|+
T Consensus 95 ~~~Ga--~~v~----iGs~~~~~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~----~~~~~~~G~ 163 (241)
T PRK13585 95 LDLGV--DRVI----LGTAAVENPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEA----AKRFEELGA 163 (241)
T ss_pred HHcCC--CEEE----EChHHhhChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHH----HHHHHHcCC
Confidence 34566 4454 5889999999999998887432 122232222 3776532 33333 445678999
Q ss_pred CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccch
Q 023442 74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 153 (282)
Q Consensus 74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~ 153 (282)
+.|++|.++.. |.. .+.+|+.+.++++. .++||+++|||+|++|+.+++++||++||+|++++.+|..+
T Consensus 164 ~~i~~~~~~~~--g~~-------~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~- 232 (241)
T PRK13585 164 GSILFTNVDVE--GLL-------EGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTL- 232 (241)
T ss_pred CEEEEEeecCC--CCc-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCH-
Confidence 99999998642 210 12348888888775 58999999999999999998779999999999999999864
Q ss_pred hhh
Q 023442 154 GHV 156 (282)
Q Consensus 154 ~~~ 156 (282)
.++
T Consensus 233 ~~~ 235 (241)
T PRK13585 233 EEA 235 (241)
T ss_pred HHH
Confidence 443
No 53
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.38 E-value=4.5e-12 Score=120.40 Aligned_cols=130 Identities=13% Similarity=0.077 Sum_probs=92.7
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCC-----CCCCCcHHH-HHHHHHHHHHhCCCCEEEEecCCccc
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDSYNQ-LCDFIYKVSSLSPTRHFIIHSRKALL 85 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G-----~d~~~~~~e-~~~~v~~~le~~Gv~~i~VH~Rt~~~ 85 (282)
+++.||++|.+|.+++.||+++|+++++- .|.+|+..- .+...+.+| .++ +++.+++.|+|+|.|.....
T Consensus 197 RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~-~~~~L~~~giD~i~vs~~~~-- 273 (362)
T PRK10605 197 RTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALY-LIEQLGKRGIAYLHMSEPDW-- 273 (362)
T ss_pred CCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHH-HHHHHHHcCCCEEEeccccc--
Confidence 67899999999999999999999999842 466655421 111124455 344 56778899999999986321
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442 86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~ 156 (282)
.+. .+. ...+.+.+++..++||+++|++ |++.++++++ ..||.|++||+++.||++. ..+
T Consensus 274 ~~~--------~~~-~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~-~k~ 334 (362)
T PRK10605 274 AGG--------EPY-SDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLV-ARL 334 (362)
T ss_pred cCC--------ccc-cHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHH-HHH
Confidence 110 011 1223233343458899999996 9999999999 4599999999999999974 444
No 54
>PLN02826 dihydroorotate dehydrogenase
Probab=99.38 E-value=7.9e-12 Score=120.20 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=99.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc---------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 72 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~---------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G 72 (282)
||..||.- . |-.-+++++.+.+++++|++. .++||.||+....++ +++. .+++.+.++|
T Consensus 222 lNiScPNt--p-----glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~----~di~-~ia~~a~~~G 289 (409)
T PLN02826 222 INVSSPNT--P-----GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK----EDLE-DIAAVALALG 289 (409)
T ss_pred EECCCCCC--C-----CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH----HHHH-HHHHHHHHcC
Confidence 89999972 1 334467899999999999743 468999999754432 1222 3456678999
Q ss_pred CCEEEEecCCc-------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCE
Q 023442 73 TRHFIIHSRKA-------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHH 138 (282)
Q Consensus 73 v~~i~VH~Rt~-------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~Dg 138 (282)
+|.|++..++. ...|.| ++.+.+...+.++++.+... ++|||+.|||.|.+|+.+++..||+.
T Consensus 290 ~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS---G~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~ 366 (409)
T PLN02826 290 IDGLIISNTTISRPDSVLGHPHADEAGGLS---GKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASL 366 (409)
T ss_pred CCEEEEEcccCcCccchhcccccccCCCcC---CccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCe
Confidence 99999985431 112222 23344555667777766533 79999999999999999999999999
Q ss_pred EEecHHhhhC-Cccc
Q 023442 139 VMVGRAAYQN-PWYT 152 (282)
Q Consensus 139 VmIGRgal~n-P~if 152 (282)
|+++++++.+ |+++
T Consensus 367 VQv~Ta~~~~Gp~~i 381 (409)
T PLN02826 367 VQLYTAFAYEGPALI 381 (409)
T ss_pred eeecHHHHhcCHHHH
Confidence 9999999774 8874
No 55
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.35 E-value=7e-12 Score=118.96 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
.+|+++.+++++++++. ||||+|++. .+..++ ++.+.++|++.|++|+||..+...++. ..|.
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~---~~~~e~----a~~l~eAGad~I~ihgrt~~q~~~sg~-------~~p~ 178 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSP---QNAREI----APIVVKAGADLLVIQGTLVSAEHVSTS-------GEPL 178 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCC---cCHHHH----HHHHHHCCCCEEEEeccchhhhccCCC-------CCHH
Confidence 57999999999999973 999999853 234443 456789999999999998543221111 1266
Q ss_pred HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.+++++ .++|||+ |+|.|.+++.+++++|||+||+||+.-.
T Consensus 179 ~l~~~i~~-~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 179 NLKEFIGE-LDVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 67777776 4899998 9999999999999999999999998854
No 56
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.35 E-value=7.9e-12 Score=111.39 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=90.1
Q ss_pred cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC------------CCCCCcHHHHHHHHHHHHHh
Q 023442 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------------VDDHDSYNQLCDFIYKVSSL 70 (282)
Q Consensus 3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G------------~d~~~~~~e~~~~v~~~le~ 70 (282)
+.||- .|. .|+.++++|+++.++++...+. .+++++++|.+ |.+... .+..+ +++.+++
T Consensus 94 ~~G~~--~vi----lg~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~~~ 164 (232)
T TIGR03572 94 SLGAD--KVS----INTAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATG-RDPVE-WAREAEQ 164 (232)
T ss_pred HcCCC--EEE----EChhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCC-CCHHH-HHHHHHH
Confidence 45663 344 5889999999999999887443 36788888774 221111 11222 3456789
Q ss_pred CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442 71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 145 (282)
Q Consensus 71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga 145 (282)
.|++.|++|+++....+. ..+|+.+.++++. .++||+++|||.|++|+.+++. +|||+||+|+++
T Consensus 165 ~G~d~i~i~~i~~~g~~~---------g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 165 LGAGEILLNSIDRDGTMK---------GYDLELIKTVSDA-VSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCCCEEEEeCCCccCCcC---------CCCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 999999999976531111 1248888888775 5899999999999999999665 999999999876
No 57
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.35 E-value=9.5e-13 Score=124.05 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=92.9
Q ss_pred cccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCC---CcHHHHHHHHHHHHHhCCCCEEEEecCCc--c
Q 023442 12 AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L 84 (282)
Q Consensus 12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~---~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~ 84 (282)
.+++.||+++.+|.+++.||+++|++++ +.||.+|+.. ++.. .+.++... +++++++.|++.+.++.-.. .
T Consensus 186 ~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~-~~~~~~g~~~~e~~~-~~~~~~~~~~d~~~~~~~~~~~~ 263 (341)
T PF00724_consen 186 RRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSP-DDFVEGGITLEETIE-IAKLLEELGVDFLDVSHGSYVHW 263 (341)
T ss_dssp --SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEET-TCSSTTSHHSHHHHH-HHHHHHHHHHTTEEEEEESEEEE
T ss_pred CCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEee-ecccCCCCchHHHHH-HHHHHHHHhhhhccccccccccc
Confidence 3689999999999999999999999998 5777777754 2211 12344433 45678889999887642211 0
Q ss_pred cC--CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442 85 LN--GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 85 ~~--G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~ 156 (282)
.. ...+.+ ..+....... +.+++..++|||++|+|.+++.++++++ ..||.|++||+++.||.+. ..+
T Consensus 264 ~~~~~~~~~~--~~~~~~~~~a-~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~-~k~ 334 (341)
T PF00724_consen 264 SEPRPSPPFD--FEPGYNLDLA-EAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLP-NKA 334 (341)
T ss_dssp EBTSSTTTTT--TTTTTTHHHH-HHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHH-HHH
T ss_pred cccccccccc--cccchhhhhh-hhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHH-HHH
Confidence 00 000011 1111112233 3334446899999999999999999999 6799999999999999974 443
No 58
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.27 E-value=4.3e-11 Score=112.51 Aligned_cols=129 Identities=21% Similarity=0.127 Sum_probs=85.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||+.-+.. .+ . .+.+.+.++++++++.+++||.||.. |... + .+ .++.++++|+|+|+||+|
T Consensus 147 i~ln~~q~~~~p-~g--~---~~f~~~le~i~~i~~~~~vPVivK~~-g~g~--~-~~----~a~~L~~aGvd~I~Vsg~ 212 (333)
T TIGR02151 147 IHLNVLQELVQP-EG--D---RNFKGWLEKIAEICSQLSVPVIVKEV-GFGI--S-KE----VAKLLADAGVSAIDVAGA 212 (333)
T ss_pred EcCcccccccCC-CC--C---cCHHHHHHHHHHHHHhcCCCEEEEec-CCCC--C-HH----HHHHHHHcCCCEEEECCC
Confidence 567777654332 22 1 23456778999999999999999975 5422 2 22 345678999999999987
Q ss_pred CcccCCCCcCC---cCCCC------CccH-----HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 82 KALLNGISPAE---NRTIP------PLKY-----EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 82 t~~~~G~~~ad---~~~i~------~~~~-----~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
... +.++ .+... ...| +.+.++.+...++|||++|||.|.+|+.+++..|||+|++||++|.
T Consensus 213 gGt----~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 213 GGT----SWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred CCC----cccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 421 0000 00000 0112 2344444313579999999999999999999999999999999874
Q ss_pred C
Q 023442 148 N 148 (282)
Q Consensus 148 n 148 (282)
.
T Consensus 289 ~ 289 (333)
T TIGR02151 289 A 289 (333)
T ss_pred H
Confidence 3
No 59
>PLN02411 12-oxophytodienoate reductase
Probab=99.27 E-value=4.5e-11 Score=114.64 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred cccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCCC-----CCCCcHHHHHHHHHHHHHh----C--CCCEEEEe
Q 023442 12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCDFIYKVSSL----S--PTRHFIIH 79 (282)
Q Consensus 12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~-----d~~~~~~e~~~~v~~~le~----~--Gv~~i~VH 79 (282)
.++|.||+++.+|.+++.||+++|+++++- .|.+|+...- ++....++... +++.+++ . |+|+|.|.
T Consensus 202 ~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~vd~i~vs 280 (391)
T PLN02411 202 DRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLA-VVERLNKLQLQNGSKLAYLHVT 280 (391)
T ss_pred CCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHH-HHHHHHHHHhhcCCCeEEEEec
Confidence 367999999999999999999999999853 3666665311 11112222222 2333443 3 59999998
Q ss_pred cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccc
Q 023442 80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if 152 (282)
.......+..... ..-++..+..+.+.+++..++||+++|+| +.++++++++. .||.|.+||+++.||.+.
T Consensus 281 ~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~ 352 (391)
T PLN02411 281 QPRYTAYGQTESG-RHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLV 352 (391)
T ss_pred CCcccccCCCccc-ccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHH
Confidence 5432100100000 00011112223233344468999999999 67999999994 499999999999999974
No 60
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.23 E-value=7.9e-11 Score=106.63 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=91.2
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHh-hcC--Ccc-----E------EEEecCCCCCCCcHHHHHHHHHHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT--NVP-----V------SVKCRIGVDDHDSYNQLCDFIYKV 67 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~-~~~--~ip-----v------svKiR~G~d~~~~~~e~~~~v~~~ 67 (282)
++.|| .+|+ .|+.++.+|+++.++.+..- +.+ ++. + -||+|.+++.... +..+ +++.
T Consensus 93 ~~~Ga--~~vi----vgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~--~~~~-~~~~ 163 (254)
T TIGR00735 93 LRAGA--DKVS----INTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGL--DAVE-WAKE 163 (254)
T ss_pred HHcCC--CEEE----EChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCC--CHHH-HHHH
Confidence 45565 4454 48889999999999988773 222 222 1 4788865543221 2222 3456
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 146 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal 146 (282)
+++.|++.|.+|++++. |.. +..+|+.+.++++. +++|||++|||.|++|+.++++ .+|||||+|++++
T Consensus 164 l~~~G~~~iivt~i~~~--g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKD--GTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH 233 (254)
T ss_pred HHHcCCCEEEEeCcCcc--cCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh
Confidence 78999999999998752 221 12248888888765 5899999999999999999999 6699999999875
Q ss_pred hC
Q 023442 147 QN 148 (282)
Q Consensus 147 ~n 148 (282)
..
T Consensus 234 ~~ 235 (254)
T TIGR00735 234 YR 235 (254)
T ss_pred CC
Confidence 44
No 61
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=1.4e-10 Score=110.23 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
.+|+++.+++++++++ + |++|+|++. .+..++ ++.+.++|++.|++|+||..+....... +|.
T Consensus 115 ~~p~l~~~iv~~~~~~-~--V~v~vr~~~---~~~~e~----a~~l~eaGvd~I~vhgrt~~~~h~~~~~-------~~~ 177 (368)
T PRK08649 115 IKPELITERIAEIRDA-G--VIVAVSLSP---QRAQEL----APTVVEAGVDLFVIQGTVVSAEHVSKEG-------EPL 177 (368)
T ss_pred CCHHHHHHHHHHHHhC-e--EEEEEecCC---cCHHHH----HHHHHHCCCCEEEEeccchhhhccCCcC-------CHH
Confidence 4688899999999886 3 667777632 223343 3456799999999999985432211111 266
Q ss_pred HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
.+.+++++ .++|||+ |+|.|++++++++++|||+||+|||-
T Consensus 178 ~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 178 NLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 67677776 4899999 99999999999999999999999985
No 62
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.19 E-value=2.1e-10 Score=102.10 Aligned_cols=128 Identities=23% Similarity=0.371 Sum_probs=100.5
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCCcHHHHHHHHHHHHHhCCCCE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHDSYNQLCDFIYKVSSLSPTRH 75 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~~~~e~~~~v~~~le~~Gv~~ 75 (282)
|.+|| .+|+ .|+.-.++|+++.++++...+ .+-|++..|. ||.+.... ++. .+++.+++.|+..
T Consensus 94 l~~G~--~rVi----iGt~av~~p~~v~~~~~~~g~--rivv~lD~r~g~vav~GW~e~s~~-~~~-~l~~~~~~~g~~~ 163 (241)
T COG0106 94 LDAGV--ARVI----IGTAAVKNPDLVKELCEEYGD--RIVVALDARDGKVAVSGWQEDSGV-ELE-ELAKRLEEVGLAH 163 (241)
T ss_pred HHCCC--CEEE----EecceecCHHHHHHHHHHcCC--cEEEEEEccCCccccccccccccC-CHH-HHHHHHHhcCCCe
Confidence 45677 6677 588889999999999999874 3556666664 67765331 122 2455678999999
Q ss_pred EEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCcc
Q 023442 76 FIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 76 i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~i 151 (282)
+.+| .|..+.+|. +++.+.++++.. ++|||++|||.|.+|++.+.+. |++||.+||+++..-.-
T Consensus 164 ii~TdI~~DGtl~G~-----------n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~ 230 (241)
T COG0106 164 ILYTDISRDGTLSGP-----------NVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFT 230 (241)
T ss_pred EEEEecccccccCCC-----------CHHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCC
Confidence 9999 566666664 378888888864 9999999999999999999986 99999999999988754
No 63
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.19 E-value=4.4e-10 Score=106.46 Aligned_cols=130 Identities=20% Similarity=0.109 Sum_probs=87.1
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
||++||+.-+.. . |- .+.+.+.+.++++++.+++||.||.. |... +. + .++.++++|+|.|.|+++
T Consensus 154 l~l~~~qe~~~p-~--g~---~~f~~~le~i~~i~~~~~vPVivK~~-g~g~--s~-~----~a~~l~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 154 IHLNPLQELVQP-E--GD---RDFRGWLDNIAEIVSALPVPVIVKEV-GFGI--SK-E----TAKRLADAGVKAIDVAGA 219 (352)
T ss_pred EeCccchhhcCC-C--Cc---ccHHHHHHHHHHHHHhhCCCEEEEeC-CCCC--cH-H----HHHHHHHcCCCEEEECCC
Confidence 466666643332 2 11 35566779999999999999999986 4321 22 2 244667899999999986
Q ss_pred Ccc-------cCCC------CcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 82 KAL-------LNGI------SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 82 t~~-------~~G~------~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.+. ..+. ...+| .++ ..+.+.++.+...++|||++|||.|..|+.+++..|||+|++||++|..
T Consensus 220 GGt~~~~ie~~R~~~~~~~~~~~~~-g~p--t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 220 GGTSWAAIENYRARDDRLASYFADW-GIP--TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred CCCCccchhhhhhhccccccccccc-cCC--HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 321 0110 00111 111 1234555555435899999999999999999999999999999998763
No 64
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.13 E-value=3.4e-10 Score=107.32 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE--EEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i--~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
+--+-++.+++.+++||+|| |... . +. ++.+.++|++.| ..||+.+.+.+. ..|+.+
T Consensus 215 ~~w~~i~~l~~~~~~PvivK---Gv~~---~-ed----a~~a~~~Gvd~I~VS~HGGrq~~~~~----------a~~~~L 273 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK---GPQC---P-ED----ADRALKAGASGIWVTNHGGRQLDGGP----------AAFDSL 273 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe---CCCC---H-HH----HHHHHHcCcCEEEECCcCccCCCCCC----------cHHHHH
Confidence 33456788888889999999 4332 2 22 345678999987 457776544332 237777
Q ss_pred HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++++.. .++|||++|||++..|+.+++..|||+|||||.+|.
T Consensus 274 ~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 274 QEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 7776644 369999999999999999999999999999998754
No 65
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.12 E-value=1.5e-09 Score=101.89 Aligned_cols=113 Identities=21% Similarity=0.187 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc--c-----cCCCCc------
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L-----LNGISP------ 90 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~-----~~G~~~------ 90 (282)
+.+.+.+.++.+++.+++||.+|.. |.. .+. + .++.++++|+|.|.|+++-. + +.+...
T Consensus 162 df~~~~~~i~~l~~~~~vPVivK~~-g~g--~s~-~----~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~ 233 (326)
T cd02811 162 DFRGWLERIEELVKALSVPVIVKEV-GFG--ISR-E----TAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAE 233 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEec-CCC--CCH-H----HHHHHHHcCCCEEEECCCCCCccccccccccccccccccc
Confidence 4555678899999999999999984 321 122 2 24567899999999997521 0 011000
Q ss_pred --CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 91 --AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 91 --ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+| .++ -...+.++.+...++|||++|||.|..|+.+++..|||+|++||++|.
T Consensus 234 ~~~~~-g~~--t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 234 YFADW-GIP--TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred ccccc-ccc--HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 011 011 023344544433489999999999999999999999999999998764
No 66
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.12 E-value=2.5e-10 Score=107.90 Aligned_cols=103 Identities=22% Similarity=0.344 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCccHHH
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
.+..+.++.+++.+++||.|| |... .++ ++.+.++|+|.|+| ||+.+...+ |..++.
T Consensus 207 ~~~~~~l~~lr~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhGGr~ld~~----------~~~~~~ 265 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVK---GIQS---PED-----ADVAINAGADGIWVSNHGGRQLDGG----------PASFDS 265 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEe---cCCC---HHH-----HHHHHHcCCCEEEEeCCCCccCCCC----------chHHHH
Confidence 344577888888889999999 3321 221 23556899999999 876543322 223677
Q ss_pred HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
+.++++.. .++|||++|||.+..|+.+++..|||+|||||+++...
T Consensus 266 l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 266 LPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 77776543 26999999999999999999999999999999876644
No 67
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.98 E-value=2.3e-09 Score=96.86 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=68.9
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|++.|+||.+++...+. +.+++.++++.+. .++||+++|||.|.+|++++++.|||+|++|++
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~---------~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGR---------DTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccC---------cchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 456778999999999988632222 2348888888775 589999999999999999999999999999999
Q ss_pred hhhCCccchhhhHh
Q 023442 145 AYQNPWYTLGHVDT 158 (282)
Q Consensus 145 al~nP~if~~~~~~ 158 (282)
++.||++| .++.+
T Consensus 106 ~l~~p~~~-~ei~~ 118 (253)
T PRK02083 106 AVANPELI-SEAAD 118 (253)
T ss_pred HhhCcHHH-HHHHH
Confidence 99999986 55543
No 68
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.92 E-value=5.2e-09 Score=93.88 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=68.4
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.|++|.++.. |.. .+.+++.++++++. .++||+++|||.|.+|++++++.|||+|++||
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~~-------~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SEG-------RETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--ccc-------CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 355678999999999988752 211 13357888888775 57999999999999999999999999999999
Q ss_pred HhhhCCccchhhhHh
Q 023442 144 AAYQNPWYTLGHVDT 158 (282)
Q Consensus 144 gal~nP~if~~~~~~ 158 (282)
+++.||+++ .++..
T Consensus 102 ~~~~~p~~~-~~i~~ 115 (243)
T cd04731 102 AAVENPELI-REIAK 115 (243)
T ss_pred hhhhChHHH-HHHHH
Confidence 999999986 55543
No 69
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.91 E-value=6.2e-09 Score=92.95 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=89.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC-------CCCC--CcHHHHHHHHHHHHHhCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-------VDDH--DSYNQLCDFIYKVSSLSP 72 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G-------~d~~--~~~~e~~~~v~~~le~~G 72 (282)
+++|| .+|+ .|+..+++|+++.++++..-.. .+-+++.+|.| |.+. .+..++ .+.+++.|
T Consensus 92 l~~Ga--~~Vv----igt~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~v~~~gw~~~~~~~~~~~----~~~~~~~g 160 (229)
T PF00977_consen 92 LDAGA--DRVV----IGTEALEDPELLEELAERYGSQ-RIVVSLDARDGYKVATNGWQESSGIDLEEF----AKRLEELG 160 (229)
T ss_dssp HHTT---SEEE----ESHHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEEEEETTTTEEEEEEHHHH----HHHHHHTT
T ss_pred HHhCC--CEEE----eChHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceEEEecCccccCCcCHHHH----HHHHHhcC
Confidence 45666 5666 5889999999999999998653 34455555544 5543 234443 34567899
Q ss_pred CCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 73 TRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 73 v~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
+..+.++ .|....+|. +++.+.++.+.. ++|||++|||.|.+|+.++.+.|+|+|++|++++..
T Consensus 161 ~~~ii~tdi~~dGt~~G~-----------d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 161 AGEIILTDIDRDGTMQGP-----------DLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp -SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CcEEEEeeccccCCcCCC-----------CHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 9999998 465555553 277777777654 899999999999999999999999999999999754
No 70
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.87 E-value=3.2e-08 Score=88.71 Aligned_cols=122 Identities=17% Similarity=0.271 Sum_probs=91.4
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHD--SYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~--~~~e~~~~v~~~le~~Gv 73 (282)
+..|| .+|+ .|+..+++|+++.++.+...+. +-|++-.|- ||.+.. +..++ .+.+++.|+
T Consensus 95 l~~Ga--~kvv----igt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~----~~~~~~~g~ 162 (234)
T PRK13587 95 FAAGI--NYCI----VGTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSF----VRQLSDIPL 162 (234)
T ss_pred HHCCC--CEEE----ECchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHH----HHHHHHcCC
Confidence 45677 5676 5899999999999999887443 445555543 465432 23333 345678999
Q ss_pred CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
..+.+. .|.++.+|. +++.+.++.+. +++||++.|||.|.+|+.++++.|+++|.+|++++.
T Consensus 163 ~~ii~tdi~~dGt~~G~-----------~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGP-----------NFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CEEEEecccCcCCCCcc-----------CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 998887 455555553 37777777764 689999999999999999999999999999999986
No 71
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.84 E-value=5.6e-08 Score=82.23 Aligned_cols=102 Identities=20% Similarity=0.126 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+++..++++++++.+ ++|+.+|++...+.. + . .+.+.|++.|.++++.....+.. .. +. ....
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~----~-~-----~~~~~g~d~i~~~~~~~~~~~~~-~~----~~-~~~~ 161 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELA----A-A-----AAEEAGVDEVGLGNGGGGGGGRD-AV----PI-ADLL 161 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccc----h-h-----hHHHcCCCEEEEcCCcCCCCCcc-Cc----hh-HHHH
Confidence 567889999999887 899999998643221 1 0 14578999999998764322211 00 00 0122
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+..+.+ .+++||+++|||++++++.++++.|||+|++||
T Consensus 162 ~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 162 LILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 333333 468999999999999999999999999999997
No 72
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.83 E-value=4.2e-08 Score=89.31 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=42.9
Q ss_pred ccHHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 99 LKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 99 ~~~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
..++.+.++++. .++||+ +.|||.|++|+..+++.|||||++|+++..
T Consensus 184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 358888888775 479998 999999999999999999999999999975
No 73
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.82 E-value=3.6e-08 Score=89.46 Aligned_cols=123 Identities=16% Similarity=0.232 Sum_probs=89.8
Q ss_pred ccccCCchhhcccCcccccccCC----HHHHHHHHHHH-hhcCCccEEEEec----------CCCCCCCcHHHHHHHHHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLD----PKFVGEAMSVI-AANTNVPVSVKCR----------IGVDDHDSYNQLCDFIYK 66 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~----p~~~~eiv~~v-~~~~~ipvsvKiR----------~G~d~~~~~~e~~~~v~~ 66 (282)
|++|+ .+|+ .|+...++ |+++.++++.. .+. +-|++..| -||.+.... ++.+++.+
T Consensus 101 l~~Ga--~rVi----igT~Av~~~~~~p~~v~~~~~~~G~~~--IvvsiD~k~~~g~~~Va~~GW~~~t~~-~~~e~~~~ 171 (262)
T PLN02446 101 LDAGA--SHVI----VTSYVFRDGQIDLERLKDLVRLVGKQR--LVLDLSCRKKDGRYYVVTDRWQKFSDL-AVDEETLE 171 (262)
T ss_pred HHcCC--CEEE----EchHHHhCCCCCHHHHHHHHHHhCCCC--EEEEEEEEecCCCEEEEECCCcccCCC-CHHHHHHH
Confidence 56777 6787 58888998 99999999998 333 33333333 256553321 12233333
Q ss_pred HHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc--CCCEEEec
Q 023442 67 VSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVG 142 (282)
Q Consensus 67 ~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~--g~DgVmIG 142 (282)
+.+.|+..|.++ .|..+.+|. +++.+.++.+. +++|||++|||.|.+|+.++.+. |+.+|.+|
T Consensus 172 -~~~~g~~eii~TdI~rDGtl~G~-----------d~el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvG 238 (262)
T PLN02446 172 -FLAAYCDEFLVHGVDVEGKRLGI-----------DEELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVG 238 (262)
T ss_pred -HHHhCCCEEEEEEEcCCCcccCC-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEE
Confidence 457889999998 576666664 27777788775 78999999999999999999983 78999999
Q ss_pred HHhh
Q 023442 143 RAAY 146 (282)
Q Consensus 143 Rgal 146 (282)
|+++
T Consensus 239 kAl~ 242 (262)
T PLN02446 239 SALD 242 (262)
T ss_pred eeHH
Confidence 9994
No 74
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.82 E-value=3.9e-08 Score=88.65 Aligned_cols=127 Identities=15% Similarity=0.180 Sum_probs=92.1
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec----------CCCCCCCcHHHHHHHHHHHHHhC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----------IGVDDHDSYNQLCDFIYKVSSLS 71 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR----------~G~d~~~~~~e~~~~v~~~le~~ 71 (282)
++.|| .+|+ .|+...++|+++.++.+...+. +-+++..| -||.+.. . .+.++ .+.+++.
T Consensus 93 l~~Ga--~~vv----igT~a~~~p~~~~~~~~~~g~~--ivvslD~k~~g~~~~v~~~Gw~~~~-~-~~~~~-~~~~~~~ 161 (243)
T TIGR01919 93 LTGGR--ARVN----GGTAALENPWWAAAVIRYGGDI--VAVGLDVLEDGEWHTLGNRGWSDGG-G-DLEVL-ERLLDSG 161 (243)
T ss_pred HHcCC--CEEE----ECchhhCCHHHHHHHHHHcccc--EEEEEEEecCCceEEEECCCeecCC-C-cHHHH-HHHHHhC
Confidence 45566 5676 4888899999999999887543 34555554 2565522 1 22232 3456899
Q ss_pred CCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEecHHhh
Q 023442 72 PTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAY 146 (282)
Q Consensus 72 Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIGRgal 146 (282)
|+..+.++ .|..+.+|. +++.+.++.+. +++|||++|||.|.+|+.++.+ .|++||++|++++
T Consensus 162 g~~~ii~tdI~~dGt~~G~-----------d~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 162 GCSRVVVTDSKKDGLSGGP-----------NELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred CCCEEEEEecCCcccCCCc-----------CHHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence 99999998 466666664 26777777664 6899999999999999998753 5999999999998
Q ss_pred hCCcc
Q 023442 147 QNPWY 151 (282)
Q Consensus 147 ~nP~i 151 (282)
.+-.-
T Consensus 230 ~g~i~ 234 (243)
T TIGR01919 230 ARFFT 234 (243)
T ss_pred cCCCC
Confidence 77643
No 75
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.81 E-value=4.2e-08 Score=88.37 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=91.2
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCCcHHHHHHHHHHHHHhCCCCE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHDSYNQLCDFIYKVSSLSPTRH 75 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~~~~e~~~~v~~~le~~Gv~~ 75 (282)
++.|| .+|+ .|+..+++|+++.++ .+.-+ .+-+++.+|- ||.+.... ...+ +++.+++.|+..
T Consensus 92 l~~Ga--~rvv----igT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v~~~gw~~~~~~-~~~e-~~~~~~~~g~~~ 160 (241)
T PRK14114 92 RKLGY--RRQI----VSSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKVAFKGWLAEEEI-DPVS-LLKRLKEYGLEE 160 (241)
T ss_pred HHCCC--CEEE----ECchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEEeeCCCeecCCC-CHHH-HHHHHHhcCCCE
Confidence 45566 5665 588899999999999 55432 3566776653 45443221 1222 234568999999
Q ss_pred EEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-----C-CCEEEecHHhhh
Q 023442 76 FIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-----G-AHHVMVGRAAYQ 147 (282)
Q Consensus 76 i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-----g-~DgVmIGRgal~ 147 (282)
+.+. .|..+.+|. +++.+.++.+. +++|||++|||.|.+|+.++.+. | ++||.+|++++.
T Consensus 161 ii~tdI~rdGt~~G~-----------d~el~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 161 IVHTEIEKDGTLQEH-----------DFSLTRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred EEEEeechhhcCCCc-----------CHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 9987 566666664 27778777765 68999999999999999999884 5 999999999877
Q ss_pred CCc
Q 023442 148 NPW 150 (282)
Q Consensus 148 nP~ 150 (282)
+-.
T Consensus 229 g~i 231 (241)
T PRK14114 229 GIL 231 (241)
T ss_pred CCC
Confidence 654
No 76
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.81 E-value=2.4e-08 Score=88.72 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=68.1
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.|+||.+++.+.+. +.+++.+.++.+. .++||+++|||.|++|+++++++|||.|++|+
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~~---------~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGGE---------PVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccCC---------CCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 4556788999999999887644332 2247888888775 48999999999999999999999999999999
Q ss_pred HhhhCCccchhhhH
Q 023442 144 AAYQNPWYTLGHVD 157 (282)
Q Consensus 144 gal~nP~if~~~~~ 157 (282)
+++.||+++ .++.
T Consensus 104 ~~l~dp~~~-~~i~ 116 (234)
T cd04732 104 AAVKNPELV-KELL 116 (234)
T ss_pred hHHhChHHH-HHHH
Confidence 999999985 5543
No 77
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.74 E-value=2.2e-07 Score=86.58 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=59.9
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.++++|+|.|++|++.. .|..+. ...|..+.++.+. .++|||++|||.+.+++.+++..||||||+|+.
T Consensus 122 a~~a~~~GaD~Ivv~g~ea--gGh~g~------~~~~~ll~~v~~~-~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 122 AKRMEKAGADAVIAEGMES--GGHIGE------LTTMALVPQVVDA-VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHcCCCEEEEECccc--CCCCCC------CcHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence 3456789999999999853 232110 1137778777765 489999999999999999999999999999998
Q ss_pred hhhCCc
Q 023442 145 AYQNPW 150 (282)
Q Consensus 145 al~nP~ 150 (282)
++.-+.
T Consensus 193 f~~t~E 198 (307)
T TIGR03151 193 FLCAKE 198 (307)
T ss_pred Hhcccc
Confidence 776554
No 78
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.72 E-value=1.8e-07 Score=83.88 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=88.7
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec-------CCCCCCC-cHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-------IGVDDHD-SYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR-------~G~d~~~-~~~e~~~~v~~~le~~Gv 73 (282)
++.|| .+|+ .|+...++|+++.++.+..-.. .+-+++..| -||.+.. +..+ +++.+++.|+
T Consensus 92 l~~Ga--~kvv----igt~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~gw~~~~~~~~e----~~~~l~~~g~ 160 (232)
T PRK13586 92 LSLDV--NALV----FSTIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIRGWKEKSMEVID----GIKKVNELEL 160 (232)
T ss_pred HHCCC--CEEE----ECchhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEccCCeeCCCCHHH----HHHHHHhcCC
Confidence 45666 5666 5889999999999999988322 244555553 2575522 2333 3446789999
Q ss_pred CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
..|.++ .|..+.+|. +++.+..+.+ . ..|++++|||.|.+|+.++.+.|+|||++|++++.+
T Consensus 161 ~~ii~tdI~~dGt~~G~-----------d~el~~~~~~-~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 161 LGIIFTYISNEGTTKGI-----------DYNVKDYARL-I-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred CEEEEecccccccCcCc-----------CHHHHHHHHh-C-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 999998 466665664 2676666654 3 345999999999999999988999999999999854
No 79
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.72 E-value=1.5e-07 Score=88.18 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEE-ecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCCcc---cCCCCcCCcCC
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVK-CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKAL---LNGISPAENRT 95 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvK-iR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt~~---~~G~~~ad~~~ 95 (282)
+...+.++++.+++.+ ++||.+| +- +.++ ++.+.++|+|.+.|+ ||... ..|....+|
T Consensus 123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-------t~e~-----a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w-- 188 (326)
T PRK05458 123 HSDSVINMIQHIKKHLPETFVIAGNVG-------TPEA-----VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-- 188 (326)
T ss_pred chHHHHHHHHHHHhhCCCCeEEEEecC-------CHHH-----HHHHHHcCcCEEEECCCCCcccccccccCCCCCcc--
Confidence 5678889999999887 4888886 32 2332 234568999999988 33311 123222222
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+..+.++++. .++|||++|||.++.|+.+++..|||+||+|+.++.
T Consensus 189 ----~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~ 235 (326)
T PRK05458 189 ----QLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAG 235 (326)
T ss_pred ----HHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcC
Confidence 12246677664 479999999999999999999999999999988764
No 80
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.71 E-value=7.2e-08 Score=87.31 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=67.7
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|++.|+++..+....+. +.+++.++++.+. .++||+++|||+|.+|+++++..||++|++|++
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~~---------~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEGR---------TTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred HHHHHHcCCCEEEEEcCCcccccC---------hhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 456678999999999876432121 2358888888775 589999999999999999999999999999999
Q ss_pred hhhCCccchhhhHh
Q 023442 145 AYQNPWYTLGHVDT 158 (282)
Q Consensus 145 al~nP~if~~~~~~ 158 (282)
++.||+++ .++.+
T Consensus 106 ~~~~p~~~-~~~~~ 118 (254)
T TIGR00735 106 AVKNPELI-YELAD 118 (254)
T ss_pred HhhChHHH-HHHHH
Confidence 99999985 55543
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.66 E-value=2.1e-07 Score=82.25 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
.+.++++.+++..++|+.+.+. +.++. ..+.+.|++.+.+ |+++...... ....++.+
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~-------t~~ea-----~~a~~~G~d~i~~~~~g~t~~~~~~--------~~~~~~~l 169 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADIS-------TLEEA-----LNAAKLGFDIIGTTLSGYTEETAKT--------EDPDFELL 169 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECC-------CHHHH-----HHHHHcCCCEEEccCccccccccCC--------CCCCHHHH
Confidence 7788888887765688877542 22332 2346789999965 4554321111 11237888
Q ss_pred HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++++.. ++||+++|||.|++++.++++.|||+|++|++++...+
T Consensus 170 ~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 170 KELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred HHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence 8887654 89999999999999999999999999999999766555
No 82
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.62 E-value=3.8e-07 Score=78.64 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=75.1
Q ss_pred ccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCC
Q 023442 19 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 96 (282)
Q Consensus 19 s~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i 96 (282)
+..-.||+-+.++++++++.. ..+...+. +++|.. .+.++|+|.|.-. |-|..-.+
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~-----~A~~~G~D~I~TTLsGYT~~t~~--------- 129 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKY-QLVMADIS-------TLEEAI-----NAAELGFDIIGTTLSGYTPYTKG--------- 129 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHH-----HHHHTT-SEEE-TTTTSSTTSTT---------
T ss_pred cCCCCCCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHH-----HHHHcCCCEEEcccccCCCCCCC---------
Confidence 345667888999999999987 78887764 455532 3568999998654 33321111
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
...+|+.+.++++. ++|||+-|.|.|++++.++++.||++|.+| +++.+|+..
T Consensus 130 ~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG-sAITrP~~I 182 (192)
T PF04131_consen 130 DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG-SAITRPQEI 182 (192)
T ss_dssp SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE--HHHH-HHHH
T ss_pred CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC-cccCCHHHH
Confidence 23469999999874 899999999999999999999999999999 788999864
No 83
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.62 E-value=4.7e-07 Score=81.07 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=89.0
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCC----CCCcHHHHHHHHHHHHHhCCCCEEE
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD----DHDSYNQLCDFIYKVSSLSPTRHFI 77 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d----~~~~~~e~~~~v~~~le~~Gv~~i~ 77 (282)
|+.|| .+|+ .|+...++ +++.++++...+. .+-+++-+|-|.- ...+..+++ +.+++. ++.+.
T Consensus 97 l~~Ga--~~vi----igt~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~li 163 (233)
T cd04723 97 LKRGA--SRVI----VGTETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELL----RRLAKW-PEELI 163 (233)
T ss_pred HHcCC--CeEE----Ecceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHH----HHHHHh-CCeEE
Confidence 56777 5666 58888999 9999999998542 4567777765511 112344433 345667 88888
Q ss_pred Eec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 78 IHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 78 VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
+.. +....+|. +++.+.++.+. +++||++.|||.|.+|++++++.|+++|.+|++++.+-
T Consensus 164 ~~di~~~G~~~g~-----------~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 164 VLDIDRVGSGQGP-----------DLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred EEEcCccccCCCc-----------CHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 874 33332332 37777788775 68999999999999999999999999999999998774
No 84
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.61 E-value=6e-07 Score=79.84 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=75.9
Q ss_pred hhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--c
Q 023442 9 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--S 80 (282)
Q Consensus 9 ~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~ 80 (282)
.+|+ .|+..+++|+++.++. +-+++-.| -||.+ ...++. ..+++.|+ .+.+. .
T Consensus 103 ~rvv----igT~a~~~p~~l~~~~--------~vvslD~~~g~v~~~g~~~--~~~~~~----~~~~~~g~-~ii~tdI~ 163 (221)
T TIGR00734 103 SRVV----VATETLDITELLRECY--------TVVSLDFKEKFLDASGLFE--SLEEVR----DFLNSFDY-GLIVLDIH 163 (221)
T ss_pred eEEe----ecChhhCCHHHHHHhh--------hEEEEEeECCccccccccc--cHHHHH----HHHHhcCC-EEEEEECC
Confidence 5565 5888899999988775 13444443 24543 333333 34567888 55554 3
Q ss_pred CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
|..+.+|. +++.+.++.+. .++|||+.|||.|++|+.++.+.|+|+|++|++++..
T Consensus 164 ~dGt~~G~-----------d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 164 SVGTMKGP-----------NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred ccccCCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 44333332 37888888775 5899999999999999999877999999999998753
No 85
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.59 E-value=2.7e-07 Score=87.18 Aligned_cols=108 Identities=18% Similarity=0.293 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++....+.++.+++.+++||.|| |... .++ ++.+.++|+|.|.|.+.-. .. -| ..+++ .+.
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhgG----~~-~d-~~~~~--~~~ 257 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK---GVQT---VED-----AVLAAEYGVDGIVLSNHGG----RQ-LD-TAPAP--IEV 257 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE---cCCC---HHH-----HHHHHHcCCCEEEEECCCc----cc-CC-CCCCH--HHH
Confidence 44566788999999999999999 4432 222 2356789999999975221 11 11 11222 333
Q ss_pred HHHHHh---cC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 104 YYALLR---DF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 104 i~~l~~---~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+.++.+ .. .++|||+.|||.+..|+.+++..|||+|+|||+++..+-
T Consensus 258 L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 258 LLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 333332 22 369999999999999999999999999999999988664
No 86
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.58 E-value=5.9e-07 Score=84.33 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCCC
Q 023442 25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIP 97 (282)
Q Consensus 25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~ 97 (282)
++.+.++++.+++.. ++||.+ |.- .+.+. ++.+.++|+|.|.||.. ++...|.. .|
T Consensus 119 ~~~~~~~i~~ik~~~p~v~Vi~----G~v--~t~~~-----A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g------~p 181 (325)
T cd00381 119 SVYVIEMIKFIKKKYPNVDVIA----GNV--VTAEA-----ARDLIDAGADGVKVGIGPGSICTTRIVTGVG------VP 181 (325)
T ss_pred cHHHHHHHHHHHHHCCCceEEE----CCC--CCHHH-----HHHHHhcCCCEEEECCCCCcCcccceeCCCC------CC
Confidence 466788888888865 244443 322 12222 23456899999999743 22212221 11
Q ss_pred CccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 98 PLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 98 ~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.+..+.++.+.. .++|||++|||.+..|+.++++.|||+||+|+.+..-..
T Consensus 182 --~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 182 --QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred --HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 255555554322 269999999999999999999999999999999977654
No 87
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.58 E-value=1e-06 Score=84.67 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCCC
Q 023442 23 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 98 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~~ 98 (282)
.+++-+.++++.+++.++ +||.+|.=.+. . ..+ +++.++..|+|+|+|.+.-.. .|.++. ++-.+|.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~---~~~----~a~~~~~~g~D~I~VsG~~Gg-tg~~~~~~~~~~g~pt 266 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-G---EGD----IAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPT 266 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-C---HHH----HHHHHHHcCCCEEEEeCCCCC-CCCCcccccccCCccH
Confidence 456778999999999987 99999986542 1 223 345566777999999865311 011110 1111221
Q ss_pred c-cHHHHHHHHhcC---CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 99 L-KYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 99 ~-~~~~i~~l~~~~---~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
+ .+..+.+.+.+. .++|||+.|+|.|..|+.+++..|||+|.+||++|.-
T Consensus 267 ~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 1 011222222211 3699999999999999999999999999999999854
No 88
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.56 E-value=4.4e-07 Score=81.13 Aligned_cols=117 Identities=23% Similarity=0.390 Sum_probs=80.9
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHD--SYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~--~~~e~~~~v~~~le~~Gv 73 (282)
++.|| .+|+ .|++.. +|+++.++.+... ++-+++..|- ||.+.. +..++++ .+++. +
T Consensus 92 ~~~G~--~~vi----vGtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~----~~~~~-~ 156 (228)
T PRK04128 92 YEIGV--ENVI----IGTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAVKGWLEESSIKVEDAYE----MLKNY-V 156 (228)
T ss_pred HHCCC--CEEE----ECchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEecCCCeEcCCCCHHHHHH----HHHHH-h
Confidence 45566 4455 367777 8999999988873 2556777664 454422 2334333 44555 7
Q ss_pred CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
..+.++ .|..+.+|. + ++.+..+++|||++|||.|.+|+.++.+.|++||++|++++..-
T Consensus 157 ~~ii~t~i~~dGt~~G~-------------d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~ 218 (228)
T PRK04128 157 NRFIYTSIERDGTLTGI-------------E---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR 218 (228)
T ss_pred CEEEEEeccchhcccCH-------------H---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence 778887 455555553 2 23333358999999999999999999989999999999986553
No 89
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.55 E-value=6.8e-07 Score=83.52 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCCc---ccCCCCcCCcCCCCCc
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKA---LLNGISPAENRTIPPL 99 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt~---~~~G~~~ad~~~i~~~ 99 (282)
+.+.+.++.+++.+..|+-++=-++ +.+ . ++.+.++|++.|.|+ ||+. ...|....+|
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV~-----t~e-~----a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~------ 185 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNVG-----TPE-A----VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW------ 185 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCC-----CHH-H----HHHHHHcCcCEEEECCCCCccccceeeeccCCCch------
Confidence 7888889999988766643332221 222 2 345678999999998 5542 2223211111
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
....+.++++. .++|||++|||.+..|+.+++..|||+||+||.+-+
T Consensus 186 ~l~ai~ev~~a-~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag 232 (321)
T TIGR01306 186 QLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG 232 (321)
T ss_pred HHHHHHHHHHh-cCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC
Confidence 13466677664 489999999999999999999999999999976643
No 90
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.52 E-value=5.3e-07 Score=85.54 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
++.+..+.|+.+++.++.|+.+| |.- +.++ ++.+.+.|+|.|.|+ |.++.. +. +...
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiK---gV~---~~ed-----a~~a~~~G~d~I~VSnhGGrqld-~~---------~~~~ 278 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVK---GIV---TAED-----AKRCIELGADGVILSNHGGRQLD-DA---------IAPI 278 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEe---cCC---CHHH-----HHHHHHCCcCEEEECCCCcCCCc-CC---------ccHH
Confidence 45556678899999999999999 442 2232 224568999999985 444321 11 1125
Q ss_pred HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.+.++.+.. ++|||+.|||.+..|+.+++..|||+||+||.++.
T Consensus 279 ~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 279 EALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred HHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 6666776643 69999999999999999999999999999998753
No 91
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.52 E-value=1.3e-06 Score=79.56 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=80.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcc--------------
Q 023442 21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKAL-------------- 84 (282)
Q Consensus 21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~-------------- 84 (282)
.-.+| +.+++..++...+.|+.+.++ +++|.. ...+.|+|+|.-++ .|..
T Consensus 95 ~r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal-----~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~ 160 (283)
T cd04727 95 EVLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEAL-----RRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGE 160 (283)
T ss_pred CCCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHH-----HHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHH
Confidence 34456 688899998877999988775 344432 23579999997653 3332
Q ss_pred ---cCCCCcCC---cCCCCCccHHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 85 ---LNGISPAE---NRTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 85 ---~~G~~~ad---~~~i~~~~~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
..|..+.. .....+..|+.+.++++. .++||| +.|||.|++++.++++.|||+|++|++++.-+
T Consensus 161 i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~ 232 (283)
T cd04727 161 IRKLQSMSEEELYAVAKEIQAPYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSE 232 (283)
T ss_pred HHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCC
Confidence 12221111 011124468999888875 479997 99999999999999999999999999998633
No 92
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.47 E-value=6.7e-07 Score=79.09 Aligned_cols=119 Identities=25% Similarity=0.379 Sum_probs=75.9
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE-----------e--
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-----------H-- 79 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V-----------H-- 79 (282)
++.+ |-+-|.||+.+.+|+.+| ++||..|.|+|.- .| +++|+..|+|+|.= |
T Consensus 55 R~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-----~E-----A~iLealgVD~IDESEVLTPAD~~~Hi~ 119 (296)
T COG0214 55 RAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-----VE-----AQILEALGVDMIDESEVLTPADEEFHIN 119 (296)
T ss_pred Hhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchh-----HH-----HHHHHHhCCCccccccccCCCchhhhcc
Confidence 3444 889999999988888775 8999999999842 11 34667778877641 1
Q ss_pred -----------cCC------c--------ccCCCCcCCc---------------CCCCC--------------ccHHHHH
Q 023442 80 -----------SRK------A--------LLNGISPAEN---------------RTIPP--------------LKYEYYY 105 (282)
Q Consensus 80 -----------~Rt------~--------~~~G~~~ad~---------------~~i~~--------------~~~~~i~ 105 (282)
+|+ + ..+|..+-.+ +.+.. ..|+.+.
T Consensus 120 K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~ 199 (296)
T COG0214 120 KWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVK 199 (296)
T ss_pred hhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHH
Confidence 111 0 0112111000 00000 0133333
Q ss_pred HHHhcCCCceE--EEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 106 ALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 106 ~l~~~~~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+++ .-.+|| ++.|||-||.|+.-+++.|||||.+|.|++.
T Consensus 200 ~~~~-~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 200 EVAK-LGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHH-hCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 3333 236787 6899999999999999999999999999744
No 93
>PLN02535 glycolate oxidase
Probab=98.47 E-value=5.7e-07 Score=85.44 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++.+--+-++.+++.++.||.||= .- +.++ ++.+.++|+|.|.|.+--..+.+.+ +...+.
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKg---V~---~~~d-----A~~a~~~GvD~I~vsn~GGr~~d~~--------~~t~~~ 267 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKG---VL---TRED-----AIKAVEVGVAGIIVSNHGARQLDYS--------PATISV 267 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEec---CC---CHHH-----HHHHHhcCCCEEEEeCCCcCCCCCC--------hHHHHH
Confidence 444555778888888899999992 21 1122 2345689999999964211111111 112455
Q ss_pred HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.++.+.. .++|||+.|||.+..|+.+++..|||+|+|||.++..+..
T Consensus 268 L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 268 LEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred HHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhh
Confidence 55665432 3699999999999999999999999999999999876653
No 94
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.46 E-value=6.2e-07 Score=82.43 Aligned_cols=141 Identities=15% Similarity=0.228 Sum_probs=90.2
Q ss_pred CccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc-------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC
Q 023442 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT 73 (282)
Q Consensus 1 ~lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~-------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv 73 (282)
+||..||. +. |---|+--..+.+.+.++..+ ...|+.+|+-.-... +..+|+ +..+++.++
T Consensus 213 viNvSsPN--tp-----Glr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~-~el~di----a~v~kk~~i 280 (398)
T KOG1436|consen 213 VINVSSPN--TP-----GLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSE-KELKDI----ALVVKKLNI 280 (398)
T ss_pred EEeccCCC--Cc-----chhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhH-HHHHHH----HHHHHHhCc
Confidence 48999997 22 322233333334444444322 245999999743322 223343 345577899
Q ss_pred CEEEEecCCc-------------ccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 74 RHFIIHSRKA-------------LLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 74 ~~i~VH~Rt~-------------~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
|.++|..-|- ...|.+ +..++|+..+.++++.+. .++||||+.|||.|.+||.+.+..||..|
T Consensus 281 dg~IvsnttVsrp~~~~~~~~~~etGGLs---G~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlv 357 (398)
T KOG1436|consen 281 DGLIVSNTTVSRPKASLVNKLKEETGGLS---GPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLV 357 (398)
T ss_pred cceeecCceeecCccccccccccccCCCC---CCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHH
Confidence 9999975331 123333 234455556666655442 25899999999999999999999999999
Q ss_pred EecHHh-hhCCccchhhhH
Q 023442 140 MVGRAA-YQNPWYTLGHVD 157 (282)
Q Consensus 140 mIGRga-l~nP~if~~~~~ 157 (282)
.|+.++ +..|-|| ..|+
T Consensus 358 QlyTal~yeGp~i~-~kIk 375 (398)
T KOG1436|consen 358 QLYTALVYEGPAII-EKIK 375 (398)
T ss_pred HHHHHHhhcCchhH-HHHH
Confidence 999998 6678775 5444
No 95
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.46 E-value=7.9e-07 Score=85.02 Aligned_cols=102 Identities=19% Similarity=0.356 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
++.+--+-++.+++.++.||.+| |.-. .++ ++.+.+.|+|.|.|.+ ..+. .+ .++ ..
T Consensus 237 ~~~~tW~~i~~lr~~~~~pvivK---gV~~---~~d-----A~~a~~~G~d~I~vsnhGGr~~-d~-------~~~--t~ 295 (383)
T cd03332 237 GPSLTWEDLAFLREWTDLPIVLK---GILH---PDD-----ARRAVEAGVDGVVVSNHGGRQV-DG-------SIA--AL 295 (383)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEe---cCCC---HHH-----HHHHHHCCCCEEEEcCCCCcCC-CC-------CcC--HH
Confidence 34444566888888889999999 3322 222 2244689999999963 2211 11 112 24
Q ss_pred HHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 102 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 102 ~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.+.++.+... ++||++.|||.+..|+.+++..|||+|++||.++
T Consensus 296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 55556655432 5999999999999999999999999999999887
No 96
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.43 E-value=3.1e-06 Score=74.66 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
++.+.++++..+. .++.+.+-+. +.+++ . .+.+.|++.+.+|+|+....+ .+++.+
T Consensus 107 ~~~~~~~~~~~~~-~g~~~~v~v~-------~~~e~----~-~~~~~g~~~i~~t~~~~~~~~-----------~~~~~~ 162 (217)
T cd00331 107 DEQLKELYELARE-LGMEVLVEVH-------DEEEL----E-RALALGAKIIGINNRDLKTFE-----------VDLNTT 162 (217)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEEC-------CHHHH----H-HHHHcCCCEEEEeCCCccccC-----------cCHHHH
Confidence 3666777776543 3554444442 22332 1 235789999999987643222 125667
Q ss_pred HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.++++.. .++||++.|||.|++|+.++++.|+|||++|++++..+..
T Consensus 163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 7777654 4799999999999999999999999999999999987764
No 97
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.42 E-value=2.3e-06 Score=75.69 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC--CcccCCCCcCCcCCCCCccHHH
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R--t~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+.+.++++.+++..++|+.+.+. +.+++ +.+.+.|++.+.++.+ +..... ..+..++.
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~-----~~a~~~G~d~i~~~~~g~t~~~~~--------~~~~~~~~ 164 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS-------TLEEG-----LAAQKLGFDFIGTTLSGYTEETKK--------PEEPDFAL 164 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC-------CHHHH-----HHHHHcCCCEEEcCCceeecCCCC--------CCCcCHHH
Confidence 56778888887644677776432 23332 2456899999987532 211000 01223677
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.++.+. .++||++.|||.|++++.++++.|+|+|++|++++.
T Consensus 165 i~~i~~~-~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 165 LKELLKA-VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHh-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 7777765 489999999999999999999999999999988664
No 98
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.41 E-value=2.5e-06 Score=77.19 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=85.8
Q ss_pred ccccCCchhhcccCcccccccCC----HHHHHHHHHHH-hhcCCccEEEEec-----------CCCCCCCcHHHHH-HHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLD----PKFVGEAMSVI-AANTNVPVSVKCR-----------IGVDDHDSYNQLC-DFI 64 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~----p~~~~eiv~~v-~~~~~ipvsvKiR-----------~G~d~~~~~~e~~-~~v 64 (282)
|+.|| .+|+ .|+.+.++ |+++.++.+.. .+. +-+++..| -||.+.... ++. ++
T Consensus 94 l~aGa--~rVv----IGS~av~~~~i~~~~~~~i~~~fG~~~--IvvsiD~k~~~~g~~~V~~~GW~~~t~~-~~~~e~- 163 (253)
T TIGR02129 94 LDEGA--SHVI----VTSWLFTKGKFDLKRLKEIVSLVGKDR--LIVDLSCRKTQDGRWIVAMNKWQTITDL-ELNAET- 163 (253)
T ss_pred HHcCC--CEEE----ECcHHHhCCCCCHHHHHHHHHHhCCCC--EEEEEEEEEcCCCcEEEEECCCcccCCC-ChHHHH-
Confidence 45566 5566 47888887 88999999988 343 33333333 257653321 122 22
Q ss_pred HHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEE
Q 023442 65 YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVM 140 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVm 140 (282)
++.+++. +..|.++ .|..+.+|. +++.+.++.+. +++|||++|||.|.+|+.++.+ .|+.++.
T Consensus 164 ~~~~~~~-~~~il~TdI~rDGtl~G~-----------dlel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aI 230 (253)
T TIGR02129 164 LEELSKY-CDEFLIHAADVEGLCKGI-----------DEELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLT 230 (253)
T ss_pred HHHHHhh-CCEEEEeeecccCccccC-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEE
Confidence 3445667 9999988 566666664 27777777765 7999999999999999999866 3788899
Q ss_pred ecHHhhh
Q 023442 141 VGRAAYQ 147 (282)
Q Consensus 141 IGRgal~ 147 (282)
+|++++.
T Consensus 231 vG~Alf~ 237 (253)
T TIGR02129 231 IGSALDI 237 (253)
T ss_pred eeehHHH
Confidence 9999854
No 99
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.41 E-value=8.1e-07 Score=84.40 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
++.+.-+-++.+++.+++||.||==+ +.++ ++.+.+.|++.|.|+ |.++.-.|. + ..
T Consensus 209 ~~~~~w~~i~~~~~~~~~pvivKgv~------~~~d-----a~~~~~~G~~~i~vs~hGGr~~d~~~--------~--~~ 267 (356)
T PF01070_consen 209 DPSLTWDDIEWIRKQWKLPVIVKGVL------SPED-----AKRAVDAGVDGIDVSNHGGRQLDWGP--------P--TI 267 (356)
T ss_dssp -TT-SHHHHHHHHHHCSSEEEEEEE-------SHHH-----HHHHHHTT-SEEEEESGTGTSSTTS---------B--HH
T ss_pred CCCCCHHHHHHHhcccCCceEEEecc------cHHH-----HHHHHhcCCCEEEecCCCcccCcccc--------c--cc
Confidence 44455566888899999999999421 2222 234568999999996 444321121 1 14
Q ss_pred HHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 102 EYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 102 ~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.+.++.+.. .++|||+.|||++..|+.+++..|||+|.|||.++
T Consensus 268 ~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 268 DALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 5555555433 37999999999999999999999999999998764
No 100
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.38 E-value=2.4e-06 Score=81.23 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCC
Q 023442 22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIP 97 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~ 97 (282)
..+++-+.+.|+.+|+.. ++||+||+=.+.. .+.+ +..+.++|+|.|+|.|...- .|-+|. |+--+|
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GG-TGAap~~~~d~~GlP 254 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGG-TGAAPLTSMDHVGLP 254 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCC-CCCCchhHHhhCCCc
Confidence 456788999999999988 8999999976532 2222 22246899999999986521 122111 111122
Q ss_pred CccHHH-H---HHHHhc-C--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 98 PLKYEY-Y---YALLRD-F--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 98 ~~~~~~-i---~~l~~~-~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
|.+ + .+...+ . -.+.+++.|+|.|+.|+.+++..|||+|.+||++|-
T Consensus 255 ---~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 255 ---TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred ---HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 332 2 222221 1 258999999999999999999999999999999974
No 101
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.36 E-value=1.4e-06 Score=83.17 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442 30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYAL 107 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l 107 (282)
+-|+.+++.++.||.+|= .- +.++ ++.+.++|+|.|.|. |.++. .+. ++ ..+.+.++
T Consensus 235 ~di~~lr~~~~~pvivKg---V~---s~~d-----A~~a~~~Gvd~I~Vs~hGGr~~-d~~--------~~-t~~~L~~i 293 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKG---IL---DPED-----ARDAVRFGADGIVVSNHGGRQL-DGV--------LS-SARALPAI 293 (381)
T ss_pred HHHHHHHHhCCCCEEEEe---cC---CHHH-----HHHHHhCCCCEEEECCCCCCCC-CCc--------cc-HHHHHHHH
Confidence 447888888999999993 32 2222 234568999999985 43321 111 11 13444455
Q ss_pred HhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 108 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 108 ~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.. .++|||+.|||.+..|+.+++..|||+||+||.++.
T Consensus 294 ~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 294 ADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred HHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 4433 369999999999999999999999999999997753
No 102
>PLN02979 glycolate oxidase
Probab=98.30 E-value=2.7e-06 Score=80.55 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++.+--+-++.+++.+++||.||- .-. .++ ++.+.++|+|.|.|.+.-..+ .|+ .+ ...+.
T Consensus 207 ~~~ltW~dl~wlr~~~~~PvivKg---V~~---~~d-----A~~a~~~Gvd~I~VsnhGGrq-----ld~--~p-~t~~~ 267 (366)
T PLN02979 207 DRTLSWKDVQWLQTITKLPILVKG---VLT---GED-----ARIAIQAGAAGIIVSNHGARQ-----LDY--VP-ATISA 267 (366)
T ss_pred CCCCCHHHHHHHHhccCCCEEeec---CCC---HHH-----HHHHHhcCCCEEEECCCCcCC-----CCC--ch-hHHHH
Confidence 344444668889999999999994 322 222 234568999999996532111 111 11 12445
Q ss_pred HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.++.+.. .++|||+.|||.+..|+.+++..|||+|++||.++.
T Consensus 268 L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 268 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 55554432 369999999999999999999999999999987753
No 103
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.30 E-value=3.9e-06 Score=74.71 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=66.1
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.|+++...+...+. +.+++.+.++++. .++||+++|||.|.+|++++++.||++|++|+
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 3456789999999999766432221 2347778888775 58999999999999999998889999999999
Q ss_pred HhhhCCccchhhhH
Q 023442 144 AAYQNPWYTLGHVD 157 (282)
Q Consensus 144 gal~nP~if~~~~~ 157 (282)
+++.||.++ .++.
T Consensus 105 ~~l~~~~~~-~~~~ 117 (232)
T TIGR03572 105 AALENPDLI-EEAA 117 (232)
T ss_pred hHhcCHHHH-HHHH
Confidence 999999874 5543
No 104
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.30 E-value=1.7e-06 Score=75.50 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCceE--EEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 112 PDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 112 ~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
-.+|| ++.|||.|+.|+.-+++.|||||.+|.|.+..+.=
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP 247 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP 247 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCH
Confidence 36888 69999999999999999999999999998666553
No 105
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.29 E-value=7.7e-06 Score=72.63 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=65.7
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.+.+..-.....|. +.+++.+.++.+. +++||++.|||.|.+|++++++.|||+|++|+
T Consensus 35 ~a~~~~~~g~~~i~v~dld~~~~g~---------~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 35 QAKAWEDQGAKWLHLVDLDGAKAGK---------PVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHHcCCCEEEEEeCCccccCC---------cccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 3556788999999999765433332 1237777778775 58999999999999999999999999999999
Q ss_pred HhhhCCccchhhh
Q 023442 144 AAYQNPWYTLGHV 156 (282)
Q Consensus 144 gal~nP~if~~~~ 156 (282)
.++.+|.++ .++
T Consensus 105 ~~l~~~~~l-~ei 116 (233)
T PRK00748 105 AAVKNPELV-KEA 116 (233)
T ss_pred hHHhCHHHH-HHH
Confidence 999999764 444
No 106
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.23 E-value=6.6e-06 Score=73.57 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=61.7
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
+.+.+.|++.+++--.+....+. ...++.+.++++.. ++|++.+|||+|.+|++.+++.|||+|++|..+
T Consensus 39 ~~~~~~G~~~l~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 39 KRWVDAGAETLHLVDLDGAFEGE---------RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHcCCCEEEEEechhhhcCC---------cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 34567999987443222221221 12377888888764 799999999999999999999999999999999
Q ss_pred hhCCccchhhhHh
Q 023442 146 YQNPWYTLGHVDT 158 (282)
Q Consensus 146 l~nP~if~~~~~~ 158 (282)
+.+|.++ .++.+
T Consensus 109 ~~~~~~~-~~i~~ 120 (241)
T PRK13585 109 VENPEIV-RELSE 120 (241)
T ss_pred hhChHHH-HHHHH
Confidence 9999985 55543
No 107
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.18 E-value=8.6e-06 Score=73.01 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=57.3
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|++.+-.+|..-. +|. ...+.+.+..+++. +++|||..|||.|++|+.++++.|||||++|.|
T Consensus 137 ar~l~~~G~~~vmPlg~pIG-sg~--------Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIG-SGQ--------GLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45567888888866665421 111 11236777777765 689999999999999999999999999999988
Q ss_pred hhh--CCcc
Q 023442 145 AYQ--NPWY 151 (282)
Q Consensus 145 al~--nP~i 151 (282)
+.. ||..
T Consensus 207 It~a~dP~~ 215 (248)
T cd04728 207 IAKAKDPVA 215 (248)
T ss_pred hcCCCCHHH
Confidence 864 3544
No 108
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.17 E-value=8.1e-06 Score=77.66 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
+.+--+-++.+++.++.||.||= .-. .++ ++.+.++|+|.|.|.+.-..+. |+ .+ .-.+.+
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKg---V~~---~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d~--~~-~t~~~L 269 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKG---VLT---GED-----ARIAIQAGAAGIIVSNHGARQL-----DY--VP-ATISAL 269 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeec---CCC---HHH-----HHHHHHcCCCEEEECCCCCCCC-----CC--ch-hHHHHH
Confidence 33344557888888999999993 322 222 2345689999999964321111 11 11 124455
Q ss_pred HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++.+.. .++|||+.|||.+..|+.+++..|||+|+|||.++.
T Consensus 270 ~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 270 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 5554432 369999999999999999999999999999998753
No 109
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.16 E-value=2.1e-05 Score=70.88 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=82.3
Q ss_pred ccccCCchhhcccCcccccccCCHHHHH-----HHHHHHhhcCCccEE--EEecCCCCCCCcHHHHHHHHHHHHHhCCCC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 74 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~-----eiv~~v~~~~~ipvs--vKiR~G~d~~~~~~e~~~~v~~~le~~Gv~ 74 (282)
||+-||.+. . + |..+.+.++.+. ++++++++.+++|+. +|...-.. ..++ + .+.+.++|++
T Consensus 36 lgip~sdp~-a--d--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~---~~~~---~-i~~~~~~Gad 103 (244)
T PRK13125 36 LGIPPKYPK-Y--D--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD---SLDN---F-LNMARDVGAD 103 (244)
T ss_pred ECCCCCCCC-C--C--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh---CHHH---H-HHHHHHcCCC
Confidence 677787752 2 2 777788888877 899999988899973 55443111 1222 2 2234567777
Q ss_pred EEEEec-----------------------------CCc--------------ccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 023442 75 HFIIHS-----------------------------RKA--------------LLNGISPAENRTIPPLKYEYYYALLRDF 111 (282)
Q Consensus 75 ~i~VH~-----------------------------Rt~--------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~ 111 (282)
.+++|. .|. .|.+..+-.+..+++--.+.+.++.+..
T Consensus 104 gvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 104 GVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV 183 (244)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc
Confidence 777762 110 0011111111111111123445554433
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.||+.-|||.|++++.++++.|||+|.+|.+++.
T Consensus 184 ~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 184 GNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 357899999999999999999999999999998864
No 110
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.16 E-value=1.6e-06 Score=80.57 Aligned_cols=136 Identities=15% Similarity=0.244 Sum_probs=99.4
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--- 78 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--- 78 (282)
+|+.||..+-. +|+ |.++-+.|..+.||...|+..+.+|+.-|+-..+.+.. + +++.....|+..|+-
T Consensus 237 ~nlscphgm~e-rgm-gla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~r---e----var~~~~~g~~GiaA~NT 307 (471)
T KOG1799|consen 237 TNLSCPHGMCE-RGM-GLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKR---E----VARSVNPVGCEGIAAINT 307 (471)
T ss_pred ccCCCCCCCcc-ccc-cceeccChhhhHHHhhhhhhccccccccccCCCccccc---c----cchhcCcccccchhhHhH
Confidence 79999998655 576 99999999999999999999999999999987665521 1 233344555555431
Q ss_pred ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442 79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 140 (282)
Q Consensus 79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm 140 (282)
.+|+ .+.|.| +..+.|+....+..+++.....|+.+-|||.|.+|+..++..|+.-|.
T Consensus 308 i~SvM~i~~~~~~P~~~~~~~s-T~GG~S---~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQ 383 (471)
T KOG1799|consen 308 IMSVMGIDMKTLRPEPCVEGYS-TPGGYS---YKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQ 383 (471)
T ss_pred HHHHhcccccccCCCccccccc-CCCCcc---ccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhh
Confidence 1222 233432 345778777777666665446789999999999999999998888888
Q ss_pred ecHHhhhCCc
Q 023442 141 VGRAAYQNPW 150 (282)
Q Consensus 141 IGRgal~nP~ 150 (282)
+..|.+..-+
T Consensus 384 VCt~V~~~~~ 393 (471)
T KOG1799|consen 384 VCTGVMMHGY 393 (471)
T ss_pred hhhHHHhcCc
Confidence 8877765543
No 111
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.13 E-value=1.4e-05 Score=70.95 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.+.|++.|.+|++.. .|..... ....++.+.++++. .++||+++|||.+++++.++++.|+|||++|++++.
T Consensus 118 ~~~~gad~i~~~~~~~--~G~~~~~----~~~~~~~i~~i~~~-~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 118 AEAAGADALVAQGAEA--GGHRGTF----DIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred HHHcCCCEEEEeCcCC--CCCCCcc----ccCHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 4568999999998632 2221110 01236777777654 489999999999999999999999999999999988
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
.+..
T Consensus 191 ~~e~ 194 (236)
T cd04730 191 TEES 194 (236)
T ss_pred Cccc
Confidence 7764
No 112
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.13 E-value=1.1e-05 Score=72.00 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=63.0
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++. ++.|++-.+++...|. +.+++.+.++.+. +++||++.|||.|.+|++++++.|+|+|.+|++
T Consensus 36 a~~~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 36 ALRFSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred HHHHHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 3455666 9988886665444443 2247778888775 689999999999999999999999999999999
Q ss_pred hhhCCccchhhhH
Q 023442 145 AYQNPWYTLGHVD 157 (282)
Q Consensus 145 al~nP~if~~~~~ 157 (282)
++ ||.+ .+++.
T Consensus 105 a~-~~~~-l~~~~ 115 (228)
T PRK04128 105 AF-DLEF-LEKVT 115 (228)
T ss_pred hc-CHHH-HHHHH
Confidence 99 9996 45543
No 113
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.10 E-value=1.7e-05 Score=71.14 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|++.|-.+|..-. +|. ...+.+.+..+++. +++|||..|||.|++|+.++++.|||||++|.|
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~--------gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGL--------GLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45567788888866554421 111 11235667777665 689999999999999999999999999999988
Q ss_pred hhh--CCcc
Q 023442 145 AYQ--NPWY 151 (282)
Q Consensus 145 al~--nP~i 151 (282)
+.. ||..
T Consensus 207 Itka~dP~~ 215 (250)
T PRK00208 207 IAVAGDPVA 215 (250)
T ss_pred hhCCCCHHH
Confidence 864 3544
No 114
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=4e-05 Score=66.82 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=77.7
Q ss_pred cccccCCHH-HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE--EecCCcccCCCCcCCcC
Q 023442 18 GVSLMLDPK-FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI--IHSRKALLNGISPAENR 94 (282)
Q Consensus 18 Gs~Ll~~p~-~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~--VH~Rt~~~~G~~~ad~~ 94 (282)
-+..-.||+ -+.++++..+ ..+.-+...+ ++++|.. .+.++|+|.|- ++|-|.. +..+
T Consensus 105 DaT~R~RP~~~~~~~i~~~k-~~~~l~MAD~-------St~ee~l-----~a~~~G~D~IGTTLsGYT~~--~~~~---- 165 (229)
T COG3010 105 DATDRPRPDGDLEELIARIK-YPGQLAMADC-------STFEEGL-----NAHKLGFDIIGTTLSGYTGY--TEKP---- 165 (229)
T ss_pred ecccCCCCcchHHHHHHHhh-cCCcEEEecc-------CCHHHHH-----HHHHcCCcEEecccccccCC--CCCC----
Confidence 456677888 8888888843 3355555544 3455533 24689999883 4554431 0111
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
...+++.++++.+ .+++||+-|.+.||++++++++.||++|.+| +++.+|.-
T Consensus 166 --~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG-sAITRp~~ 217 (229)
T COG3010 166 --TEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVG-SAITRPEE 217 (229)
T ss_pred --CCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEEC-cccCCHHH
Confidence 1225888888876 5899999999999999999999999999999 88888863
No 115
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.04 E-value=3.2e-05 Score=77.22 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred ccccCCchhhcccCcccccccCC------------HHHHHHHHHHHhhcCCccEEEEecC--------------------
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLD------------PKFVGEAMSVIAANTNVPVSVKCRI-------------------- 49 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~------------p~~~~eiv~~v~~~~~ipvsvKiR~-------------------- 49 (282)
|+.|| .||+ .|++..++ |+++.++.+..-+. .+-|++..|-
T Consensus 344 l~~Ga--dkV~----i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q-~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 344 FRSGA--DKIS----IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ-AVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHcCC--CEEE----EChHHHhChhhhhccccccCHHHHHHHHHHcCCc-eEEEEEecCcCcccCccccccccccccccC
Confidence 56677 6777 46666665 69999999988543 1233333321
Q ss_pred --------------CCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 023442 50 --------------GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 113 (282)
Q Consensus 50 --------------G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ 113 (282)
||.+...+ +..+ .++.+++.|+..|.+. .|..+.+|. +.+.+.++.+. ++
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~-~~~~-~~~~~~~~Gageil~t~id~DGt~~G~-----------d~~l~~~v~~~-~~ 482 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPI-GAYE-LAKAVEELGAGEILLNCIDCDGQGKGF-----------DIELVKLVSDA-VT 482 (538)
T ss_pred cCcccceEEEEEEecCcccCCC-CHHH-HHHHHHhcCCCEEEEeeccccccccCc-----------CHHHHHHHHhh-CC
Confidence 34332221 1222 3456789999999887 455555554 26666666654 69
Q ss_pred ceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 114 LTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 114 ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
+|||++||+.+++|+.+++. +|+|+++.|
T Consensus 483 ipviasGG~g~~~d~~~~~~~~~~~a~~aa 512 (538)
T PLN02617 483 IPVIASSGAGTPEHFSDVFSKTNASAALAA 512 (538)
T ss_pred CCEEEECCCCCHHHHHHHHhcCCccEEEEE
Confidence 99999999999999999998 889999998
No 116
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=98.04 E-value=1.9e-05 Score=75.25 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=82.9
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCC--ccEEEEecCC-CCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcc-cCC
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG-VDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNG 87 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~--ipvsvKiR~G-~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-~~G 87 (282)
+++.||+++.++.+++.|++++|++.+. .+..+-.+.+ +.+. .+.++.. .++.++++.|+|.+-+.+++.. +.+
T Consensus 212 RtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~-~~~~~y~~~g~df~~l~~g~~~~~~h 290 (400)
T KOG0134|consen 212 RTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAI-KMCGLYEDGGLDFVELTGGTFLAYVH 290 (400)
T ss_pred cccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhhhhccccccchH-HHHHHHHhcccchhhccCchhhhhhh
Confidence 5789999999999999999999999873 2222222211 0110 1222222 2345678889996555544321 110
Q ss_pred CCcCCcCCCCCccHHHH---HHHHhcCCCce-EEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442 88 ISPAENRTIPPLKYEYY---YALLRDFPDLT-FTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 153 (282)
Q Consensus 88 ~~~ad~~~i~~~~~~~i---~~l~~~~~~ip-Vi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~ 153 (282)
. ..-+.--+.++..+ .+-.+..-+.+ |.++|+.++.+.+.++++ ...|+|..||.++.||+|..
T Consensus 291 ~--i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~ 359 (400)
T KOG0134|consen 291 F--IEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPK 359 (400)
T ss_pred h--ccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhH
Confidence 0 00000001112222 12222222444 457889999999999999 66889999999999999963
No 117
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.02 E-value=0.00017 Score=65.63 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+++.+.++++..++ .+..+.|-+. +.+|+ . .+.++|++.|.+|+|+.... ....+.
T Consensus 145 ~~~~l~~li~~a~~-lGl~~lvevh-------~~~E~----~-~A~~~gadiIgin~rdl~~~-----------~~d~~~ 200 (260)
T PRK00278 145 DDEQLKELLDYAHS-LGLDVLVEVH-------DEEEL----E-RALKLGAPLIGINNRNLKTF-----------EVDLET 200 (260)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHH----H-HHHHcCCCEEEECCCCcccc-----------cCCHHH
Confidence 45678888888765 3666666543 23343 2 23478999999999874211 112566
Q ss_pred HHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 104 YYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 104 i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.++++..++ +|+|+-|||.|++|+.++++.|+|+|.||++++..+..
T Consensus 201 ~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp 249 (260)
T PRK00278 201 TERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDP 249 (260)
T ss_pred HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 6677665554 69999999999999999999999999999999988875
No 118
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.00 E-value=4e-05 Score=73.83 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCC
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTI 96 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i 96 (282)
+.+.+.++++.+++.+ +.+|.++- . .+.++ ++.+.++|+|.|.|--. |+...|.. .
T Consensus 177 ~~~~~~~~v~~ik~~~p~~~vi~g~---V---~T~e~-----a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g------~ 239 (404)
T PRK06843 177 HSTRIIELVKKIKTKYPNLDLIAGN---I---VTKEA-----ALDLISVGADCLKVGIGPGSICTTRIVAGVG------V 239 (404)
T ss_pred CChhHHHHHHHHHhhCCCCcEEEEe---c---CCHHH-----HHHHHHcCCCEEEECCCCCcCCcceeecCCC------C
Confidence 3556667777777665 55555532 1 12322 23456899999986311 11112221 1
Q ss_pred CCccHHHH---HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 97 PPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 97 ~~~~~~~i---~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
| .+..+ .++++. .++|||+-|+|.++.|+.+++..|||+||+|+.+.+-
T Consensus 240 p--~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 240 P--QITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred C--hHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 1 23433 444443 4799999999999999999999999999999988663
No 119
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.99 E-value=7.8e-05 Score=73.45 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCC
Q 023442 23 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRT 95 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~ 95 (282)
-+++.+.++++.+++.. ++||.+ |.- .+.+. ++.+.++|+|.|-|-++ |+.+.|.+.
T Consensus 248 g~~~~~~~~i~~i~~~~~~~~vi~----g~~--~t~~~-----~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~----- 311 (475)
T TIGR01303 248 GHQVKMISAIKAVRALDLGVPIVA----GNV--VSAEG-----VRDLLEAGANIIKVGVGPGAMCTTRMMTGVGR----- 311 (475)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEEE----ecc--CCHHH-----HHHHHHhCCCEEEECCcCCccccCccccCCCC-----
Confidence 36788999999999865 789887 321 22322 23456899999997643 223333221
Q ss_pred CCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 96 IPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 96 i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
|. ...+.++ +++. ++|||+.|||.++.|+.+++..|||+||+|+-+-
T Consensus 312 -~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~a 361 (475)
T TIGR01303 312 -PQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWFA 361 (475)
T ss_pred -ch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhc
Confidence 11 2333333 3333 7999999999999999999999999999997664
No 120
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.97 E-value=3.6e-05 Score=76.11 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCCCC
Q 023442 26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPP 98 (282)
Q Consensus 26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~ 98 (282)
..+.+.++.+++.. +.||.++- . .+.++ ++.+.++|++.|.|-.. |+...|.. +|
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~---v---~t~e~-----a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g------~p- 315 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGN---V---ATAEA-----ARALIEAGADAVKVGIGPGSICTTRIVAGVG------VP- 315 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEec---c---CCHHH-----HHHHHHcCCCEEEECCCCCccccceeecCCC------cC-
Confidence 34556677777765 67777632 1 12322 22356899999976311 12222221 12
Q ss_pred ccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 99 LKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 99 ~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
.++.+.++.+. ..++|||+.|||.++.|+.+++..|||+||+|..+ ..|
T Consensus 316 -~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~-a~~ 366 (486)
T PRK05567 316 -QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSML-AGT 366 (486)
T ss_pred -HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccc-ccc
Confidence 25666555442 13799999999999999999999999999999654 444
No 121
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.95 E-value=5.7e-05 Score=67.04 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=65.9
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.++|..-.....|. +.+++.+.++.+. .++||...|+|.+.+|++++++.|||.|++|.
T Consensus 33 ~a~~~~~~g~~~l~v~dl~~~~~g~---------~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDLDGAKEGG---------PVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHcCCCEEEEEeCCccccCC---------CCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 3556789999999998655433332 1236777788775 58999999999999999999999999999999
Q ss_pred HhhhCCccchhhhH
Q 023442 144 AAYQNPWYTLGHVD 157 (282)
Q Consensus 144 gal~nP~if~~~~~ 157 (282)
.++.||..+ .++.
T Consensus 103 ~~l~d~~~~-~~~~ 115 (230)
T TIGR00007 103 AAVENPDLV-KELL 115 (230)
T ss_pred HHhhCHHHH-HHHH
Confidence 999999875 4443
No 122
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.93 E-value=7.2e-05 Score=65.24 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=55.0
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+++.|+|.+.++.-..... .. ..++..++.+.++.+. .++||++.||| +++++.+++++|+|+|++|+++.
T Consensus 110 ~a~~~Gadyi~~g~v~~t~~----k~--~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~ 181 (201)
T PRK07695 110 QAEKNGADYVVYGHVFPTDC----KK--GVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIF 181 (201)
T ss_pred HHHHcCCCEEEECCCCCCCC----CC--CCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHh
Confidence 35678999997653211100 00 1133457888777664 47999999999 99999999999999999999997
Q ss_pred hCCc
Q 023442 147 QNPW 150 (282)
Q Consensus 147 ~nP~ 150 (282)
..+.
T Consensus 182 ~~~~ 185 (201)
T PRK07695 182 SSAN 185 (201)
T ss_pred cCCC
Confidence 5443
No 123
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=97.93 E-value=1.6e-05 Score=75.47 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCcc
Q 023442 23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
.+|-...+.+..+++.+..|+.+| |... .++. . .+-+.|++.|.++ +..+...|.+ .
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~---~~D~----~-~a~~tg~~~I~vsnhggrqlD~g~s----------t 259 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GILA---PEDA----A-GAGGTGADGIEVSNHGGRQLDWGIS----------T 259 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CCCC---HHHH----H-hhccCCceEEEEEcCCCccccCCCC----------h
Confidence 344445555555555555555443 3332 1232 1 2347889999995 4332222221 1
Q ss_pred HHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 101 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 101 ~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.+.++....+ .++|++.|||+|..|+.+++..|||+|++||..+.
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 455666666555 49999999999999999999999999999998754
No 124
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.93 E-value=6.6e-05 Score=73.53 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cC----CcccCCCCcCCcCCCCC
Q 023442 26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SR----KALLNGISPAENRTIPP 98 (282)
Q Consensus 26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~R----t~~~~G~~~ad~~~i~~ 98 (282)
..+.+.++.+++.. ++||.++. . .+.++ ++.+.++|+|+|.|. +. |+...|.. .|.
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~---v---~t~~~-----a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g------~p~ 312 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGN---V---ATAEQ-----AKALIDAGADGLRVGIGPGSICTTRIVAGVG------VPQ 312 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEe---C---CCHHH-----HHHHHHhCCCEEEECCCCCcCCccceecCCC------ccH
Confidence 56777788888773 77887742 1 12222 233567999999864 21 22222221 111
Q ss_pred ccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 99 LKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 99 ~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
...+.++ +++ .++|||+.|||.++.|+.++++.|||+||+|+.+.+-...
T Consensus 313 --~~~i~~~~~~~~~-~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~ 365 (450)
T TIGR01302 313 --ITAVYDVAEYAAQ-SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES 365 (450)
T ss_pred --HHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC
Confidence 3444444 333 4799999999999999999999999999999777655543
No 125
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.93 E-value=5.2e-05 Score=67.24 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++..++.|+|.|+.--=|....|. .+.++.+.+.++. ..||+...|||.|.+|+.+++..|||=|.|..
T Consensus 35 lA~~Y~e~GADElvFlDItAs~~gr---------~~~~~vv~r~A~~-vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 35 LAKRYNEEGADELVFLDITASSEGR---------ETMLDVVERVAEQ-VFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred HHHHHHHcCCCeEEEEecccccccc---------hhHHHHHHHHHhh-ceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 3567789999999875444322221 2247888888875 58999999999999999999999999999999
Q ss_pred HhhhCCccc
Q 023442 144 AAYQNPWYT 152 (282)
Q Consensus 144 gal~nP~if 152 (282)
+|+.||.+.
T Consensus 105 aAv~~p~lI 113 (256)
T COG0107 105 AAVKDPELI 113 (256)
T ss_pred hHhcChHHH
Confidence 999999975
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.88 E-value=0.00016 Score=71.76 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cC----CcccCCCCcCCcCCCCCc
Q 023442 27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SR----KALLNGISPAENRTIPPL 99 (282)
Q Consensus 27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~R----t~~~~G~~~ad~~~i~~~ 99 (282)
.+.+.++.+++.. +.+|.++- . .+.++ ++.+.++|+|.|.|. +. |+...|.. ... ..
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~---v---~t~e~-----a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g---~~~--~~ 338 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGN---V---VTMYQ-----AQNLIQAGVDGLRVGMGSGSICTTQEVCAVG---RGQ--AT 338 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEec---C---CCHHH-----HHHHHHcCcCEEEECCCCCccccCccccccC---CCc--cc
Confidence 3446666666654 45554431 1 12332 234568999999773 32 11111110 001 11
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+..+.++++. .++|||+-|||.+..|+.+++..|||+||+|..+..
T Consensus 339 ~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 339 AVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred HHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 24445666664 479999999999999999999999999999977654
No 127
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.88 E-value=0.00012 Score=72.12 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---c---CCcccCCCCcCCcCCCCC
Q 023442 26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---S---RKALLNGISPAENRTIPP 98 (282)
Q Consensus 26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~---Rt~~~~G~~~ad~~~i~~ 98 (282)
..+.++++.+++.. +.+|.+. . -.+.++ ++.+.++|+|.|-|= | -|+.+.|.+. |
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~ag----n--v~t~~~-----a~~l~~aGad~v~vgig~gsictt~~~~~~~~------p- 314 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAG----N--VVTAEG-----TRDLVEAGADIVKVGVGPGAMCTTRMMTGVGR------P- 314 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEee----c--cCCHHH-----HHHHHHcCCCEEEECccCCcccccccccCCch------h-
Confidence 45556666666554 4555441 1 112322 233567999999863 1 2334444332 1
Q ss_pred ccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 99 LKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 99 ~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
.+..+.++++. ..++|||+-|+|.++.|+.+++..|||+||+|..+.+-.
T Consensus 315 -~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 315 -QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY 366 (479)
T ss_pred -HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence 26777666542 237999999999999999999999999999998886554
No 128
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.85 E-value=0.0001 Score=66.14 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=64.4
Q ss_pred HHHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 65 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 65 ~~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
++.+.+ .|++.|+|--=+....|. +.+++.+.++++. +.+||...|||+|.+|++++++.||+-|.+|.
T Consensus 37 a~~~~~~~Ga~~l~ivDLd~a~~~~---------~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 37 IAYYSQFECVNRIHIVDLIGAKAQH---------AREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred HHHHHhccCCCEEEEEECcccccCC---------cchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 445666 799999886433221221 2247788888874 68999999999999999999999999999999
Q ss_pred HhhhCCccchhhhHh
Q 023442 144 AAYQNPWYTLGHVDT 158 (282)
Q Consensus 144 gal~nP~if~~~~~~ 158 (282)
.++.||.++ +++..
T Consensus 107 ~a~~~~~~l-~~~~~ 120 (234)
T PRK13587 107 KGIQDTDWL-KEMAH 120 (234)
T ss_pred hHhcCHHHH-HHHHH
Confidence 999999975 55543
No 129
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.85 E-value=0.0001 Score=66.98 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=64.1
Q ss_pred HHHHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 64 IYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
+++.+++.|++.|.+.- +....+| .+++.+.++++. +.+||++.|||.|.+|++++++.|+++|.+
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~~~-----------~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRGSE-----------PNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCCc-----------ccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence 34567899999999863 3322122 247888888875 589999999999999999999999999999
Q ss_pred cHHhhhCCccchhhhH
Q 023442 142 GRAAYQNPWYTLGHVD 157 (282)
Q Consensus 142 GRgal~nP~if~~~~~ 157 (282)
|.+++.+|.++ .++.
T Consensus 103 gs~~~~~~~~~-~~~~ 117 (258)
T PRK01033 103 NTAALEDPDLI-TEAA 117 (258)
T ss_pred ChHHhcCHHHH-HHHH
Confidence 99999999875 5543
No 130
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.84 E-value=0.00043 Score=58.98 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
+++.+.+.++++.+.+ ++|+.++.+.+.. .+.+++.+ +.+++++.|++.|-.+.... .+. .++
T Consensus 95 ~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~~----------~~~ 159 (201)
T cd00945 95 DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GGG----------ATV 159 (201)
T ss_pred CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CCC----------CCH
Confidence 3678888888988874 8999999987765 12233333 35566789999998775321 111 125
Q ss_pred HHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 102 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 102 ~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.++++..+ ++||+..||+.+++++..++..||+|+++|
T Consensus 160 ~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 160 EDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 66666666543 689999999999999999999999999876
No 131
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.84 E-value=0.0002 Score=67.08 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHhCCCCEEEEe------cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442 67 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH 138 (282)
Q Consensus 67 ~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~Dg 138 (282)
.+.++|+|.|.|. ..|+...|..- | .+..+.++++.. .++|||+-|||.+.-|+.+++..|||+
T Consensus 166 ~Li~aGAD~ikVgiGpGSicttR~~~Gvg~------p--qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~ 237 (343)
T TIGR01305 166 ELILSGADIVKVGIGPGSVCTTRTKTGVGY------P--QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF 237 (343)
T ss_pred HHHHcCCCEEEEcccCCCcccCceeCCCCc------C--HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence 4568999999875 12334444421 1 155555554422 379999999999999999999999999
Q ss_pred EEec
Q 023442 139 VMVG 142 (282)
Q Consensus 139 VmIG 142 (282)
||+|
T Consensus 238 VMlG 241 (343)
T TIGR01305 238 VMLG 241 (343)
T ss_pred EEEC
Confidence 9999
No 132
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.83 E-value=7.9e-05 Score=73.84 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCC---cccCCCCcCCcCCCC
Q 023442 25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRK---ALLNGISPAENRTIP 97 (282)
Q Consensus 25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt---~~~~G~~~ad~~~i~ 97 (282)
...+.+.++.+++.. ++||.++. . .+.++ ++.+.++|+|+|.|- |.+ +...|.+ +|
T Consensus 266 s~~~~~~i~~ik~~~~~~~v~aG~---V---~t~~~-----a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g------~p 328 (495)
T PTZ00314 266 SIYQIDMIKKLKSNYPHVDIIAGN---V---VTADQ-----AKNLIDAGADGLRIGMGSGSICITQEVCAVG------RP 328 (495)
T ss_pred chHHHHHHHHHHhhCCCceEEECC---c---CCHHH-----HHHHHHcCCCEEEECCcCCcccccchhccCC------CC
Confidence 344566777777764 56665521 1 12222 234568999999862 211 1122221 12
Q ss_pred CccHHHH---HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 98 PLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 98 ~~~~~~i---~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
. +..+ .+.+++ .++|||+.|||.++.|+.+++..|||+||+|+.+.+
T Consensus 329 ~--~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 329 Q--ASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred h--HHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 1 3333 333443 379999999999999999999999999999988654
No 133
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.79 E-value=0.00035 Score=65.73 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+..+.++.+ ..++|||+.|||.+.+++..++..|||||++|..++.-+.-
T Consensus 179 ~~L~~~v~~-~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 179 FSLLPQVRD-AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp HHHHHHHHH-H-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred eeHHHHHhh-hcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 445555554 35799999999999999999999999999999999876653
No 134
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=2.3e-05 Score=74.62 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=95.7
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
+|+|||..+.+..+. |..++..+..+..+.+..+...+.|+ .|.|+-.+..+.. .+ ++.+++.+ .+.+|+|
T Consensus 292 ~~~~~p~~~~~~~~~-~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~----~~-~~~le~~~--~l~i~~r 362 (477)
T KOG2334|consen 292 IQEGCPRGKRIQAAQ-TVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTV----NL-AERLEDLS--ALAIHGR 362 (477)
T ss_pred hhccCchhhHhhcch-hHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhh----hH-hhhHHhcc--chhhhhc
Confidence 589999999997666 99999999999999999999999999 8999865543332 22 33456666 6788888
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
..+.+-..|++| +.....+.. ..+++++||++....+- ..+++.+||.+||.+.|-.+|
T Consensus 363 ~~f~r~~~pa~~--------~~~k~~l~~-~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~ 421 (477)
T KOG2334|consen 363 KIFDRPTDPAKW--------DTPKMVLAD-LCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIW 421 (477)
T ss_pred ccccccCCCcCC--------CCHHHHHHH-hhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhcccc
Confidence 644343334444 333344333 36889999999887774 336777899999999888876
No 135
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.71 E-value=0.00021 Score=64.30 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=64.2
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|++.|++--=+.. .|. +.+.+.+.++.+. .++||...|||.|.||+++++..||+-|.+|.+
T Consensus 38 a~~~~~~g~~~l~ivDLd~~-~g~---------~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~ 106 (241)
T PRK14024 38 ALAWQRDGAEWIHLVDLDAA-FGR---------GSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTA 106 (241)
T ss_pred HHHHHHCCCCEEEEEecccc-CCC---------CccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 45567899999988643322 122 1246778888876 489999999999999999999999999999999
Q ss_pred hhhCCccchhhhH
Q 023442 145 AYQNPWYTLGHVD 157 (282)
Q Consensus 145 al~nP~if~~~~~ 157 (282)
++.||.++ .++.
T Consensus 107 ~l~~p~l~-~~i~ 118 (241)
T PRK14024 107 ALENPEWC-ARVI 118 (241)
T ss_pred HhCCHHHH-HHHH
Confidence 99999985 5543
No 136
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.64 E-value=0.00037 Score=69.21 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecC----CcccCCCCcCCcCCCCCcc
Q 023442 27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSR----KALLNGISPAENRTIPPLK 100 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~R----t~~~~G~~~ad~~~i~~~~ 100 (282)
.+.+.++.+++.+..++.|+. |-- .+.+. ++.+.++|+|.|.| |+. |+...|...+ .
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~a--GnV--~t~e~-----a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~--------~ 331 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGA--GNV--VDREG-----FRYLAEAGADFVKVGIGGGSICITREQKGIGRG--------Q 331 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEe--ccc--cCHHH-----HHHHHHcCCCEEEECCCCCcCcccccccCCCcc--------H
Confidence 345666666665543344432 111 12222 22345799999987 433 2323333211 1
Q ss_pred HHHHHHHHhc-------C-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 101 YEYYYALLRD-------F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 101 ~~~i~~l~~~-------~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+..+.++++. . .++|||+-|||.+.-|+.+++..|||+||+||.+-+
T Consensus 332 ~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 332 ATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 4444444331 1 138999999999999999999999999999998765
No 137
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=97.63 E-value=0.00027 Score=65.16 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
+|.+--+=++.+++.++.|+-+|==+ . .++ ++.+.++|++.|+|+ |..+ +.+. ++ ..
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGil---t---~eD-----A~~Ave~G~~GIIVSNHGgRQ-lD~v-pA--------tI 265 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVL---T---GED-----ARKAVEAGVAGIIVSNHGGRQ-LDYV-PA--------TI 265 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeec---c---cHH-----HHHHHHhCCceEEEeCCCccc-cCcc-cc--------hH
Confidence 56666677888899999999999322 1 122 123458999999995 4332 2222 22 25
Q ss_pred HHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 102 EYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 102 ~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.+.++++.. -+|||+.-|||++..|+.+++..||.+|.|||..+
T Consensus 266 ~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 266 EALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred HHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 6666666543 26999999999999999999999999999998654
No 138
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.62 E-value=0.00033 Score=66.92 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=33.6
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.+|||+.|||.|..|+.+++..|||+||+|+.++.-
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 399999999999999999999999999999998764
No 139
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.62 E-value=0.0021 Score=60.30 Aligned_cols=135 Identities=18% Similarity=0.154 Sum_probs=78.5
Q ss_pred hcccCcccc--cccCCHHHHHHHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHH------------------------
Q 023442 11 VAGHGCFGV--SLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDF------------------------ 63 (282)
Q Consensus 11 v~~~g~yGs--~Ll~~p~~~~eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~------------------------ 63 (282)
|.+.|++|. .-...|+.+.+.++.+++. .+.|+.|-+- ++.......+.++.
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~-~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~ 101 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGIL-GFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEA 101 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe-ccCCCcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHH
Confidence 444454442 1234688888888888885 5788888762 22111000111100
Q ss_pred -------------HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh------cCCCceEEEccCCCC
Q 023442 64 -------------IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR------DFPDLTFTLNGGINT 124 (282)
Q Consensus 64 -------------v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~------~~~~ipVi~nGdI~s 124 (282)
.++.+++.|+|.|++.|... .|..+ +.... +-|..+.+.+. ...++|||+.|||.+
T Consensus 102 ~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EA--GGH~G-~~~t~--~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~d 176 (320)
T cd04743 102 IGISTYLHVPSPGLLKQFLENGARKFIFEGREC--GGHVG-PRSSF--VLWESAIDALLAANGPDKAGKIHLLFAGGIHD 176 (320)
T ss_pred CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcC--cCCCC-CCCch--hhHHHHHHHHHHhhcccccCCccEEEEcCCCC
Confidence 13456677888888877543 23211 10111 11333322221 113799999999999
Q ss_pred HHHHHHHHHcCC--------CEEEecHHhhhCCcc
Q 023442 125 VDEVNAALRKGA--------HHVMVGRAAYQNPWY 151 (282)
Q Consensus 125 ~eda~~~l~~g~--------DgVmIGRgal~nP~i 151 (282)
...+..++..|+ +||.+|..++.-+..
T Consensus 177 gr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 177 ERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred HHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 999999888666 899999888665543
No 140
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.56 E-value=0.00019 Score=64.15 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=61.2
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.++|.-=++...|. +.+++.+.++++.. .+||...|||.|.+|++++++.||+-|.+|.
T Consensus 34 ~a~~~~~~g~~~l~ivDLdaa~~g~---------~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 34 VAKAFNEQGADELHIVDLDAAKEGR---------GSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp HHHHHHHTT-SEEEEEEHHHHCCTH---------HHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHcCCCEEEEEEccCcccCc---------hhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 3456689999999987322211221 22477788888764 6999999999999999999999999999999
Q ss_pred HhhhCCccchhhh
Q 023442 144 AAYQNPWYTLGHV 156 (282)
Q Consensus 144 gal~nP~if~~~~ 156 (282)
.++.||.++ .++
T Consensus 104 ~~~~~~~~l-~~~ 115 (229)
T PF00977_consen 104 EALEDPELL-EEL 115 (229)
T ss_dssp HHHHCCHHH-HHH
T ss_pred HHhhchhHH-HHH
Confidence 999999975 544
No 141
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.56 E-value=0.00041 Score=62.55 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=63.4
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.++|--=+....|. +.+++.+.++.+.. +||-..|||+|.+|++++++.|||-|.||.
T Consensus 35 ~A~~~~~~ga~~lhivDLd~a~~g~---------~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT 103 (241)
T PRK14114 35 LVEKLIEEGFTLIHVVDLSKAIENS---------VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_pred HHHHHHHCCCCEEEEEECCCcccCC---------cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence 3556778999999886322111222 23477888888763 799999999999999999999999999999
Q ss_pred HhhhCCccchhhhH
Q 023442 144 AAYQNPWYTLGHVD 157 (282)
Q Consensus 144 gal~nP~if~~~~~ 157 (282)
.++.||.++ +++.
T Consensus 104 ~a~~~p~~l-~~~~ 116 (241)
T PRK14114 104 KVLEDPSFL-KFLK 116 (241)
T ss_pred hhhCCHHHH-HHHH
Confidence 999999864 6653
No 142
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.54 E-value=0.00044 Score=66.08 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=34.2
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
++|||+.|||.+..|+.+++..|||+||+|+.+..-.
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAA 292 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence 5999999999999999999999999999999987643
No 143
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.51 E-value=0.0008 Score=58.54 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=53.7
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.+.|+|.|.+++-... +.. .. ..++..++.+.++++...++||++-||| |.+++.++++.|+|+|.+|++++.+
T Consensus 121 ~~~gaD~v~~~~~~~~--~~~-~~--~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 121 LAAGADYVGVGPIFPT--PTK-KD--AKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred hHcCCCEEEECCccCC--CCC-CC--CCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 4678999988742111 110 00 1122337778777765545999999999 7999999999999999999998766
Q ss_pred Cc
Q 023442 149 PW 150 (282)
Q Consensus 149 P~ 150 (282)
+.
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 55
No 144
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.48 E-value=0.0011 Score=62.36 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHhCCCCEEEEe------cCCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442 67 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAH 137 (282)
Q Consensus 67 ~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~D 137 (282)
-|.++|+|.+-|= .-|+...|...++ +..+.+. +++ .++|||+-|||.+.-|+.+++..|+|
T Consensus 167 ~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQ--------ltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd 237 (346)
T PRK05096 167 ELILSGADIVKVGIGPGSVCTTRVKTGVGYPQ--------LSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGAD 237 (346)
T ss_pred HHHHcCCCEEEEcccCCccccCccccccChhH--------HHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCC
Confidence 3568999999763 1233344543211 4444333 333 47999999999999999999999999
Q ss_pred EEEecHHhhhC
Q 023442 138 HVMVGRAAYQN 148 (282)
Q Consensus 138 gVmIGRgal~n 148 (282)
+||+|.-+-+-
T Consensus 238 ~VMlGsllAGt 248 (346)
T PRK05096 238 FVMLGGMLAGH 248 (346)
T ss_pred EEEeChhhcCc
Confidence 99999766443
No 145
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.46 E-value=0.001 Score=57.40 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=53.6
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.+.|+|.+.+..-.. .+..+ + ..++..++.+.++++..+++||++-||| |.+++.+++++|+|||.+|++++.
T Consensus 112 a~~~g~dyi~~~~v~~--t~~k~-~--~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 112 AEAEGADYIGFGPIFP--TPTKK-D--PAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred HhHcCCCEEEECCccC--CCCCC-C--CCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence 3467999988643211 11100 0 1122347777777765557999999999 699999999999999999999986
Q ss_pred CCc
Q 023442 148 NPW 150 (282)
Q Consensus 148 nP~ 150 (282)
...
T Consensus 186 ~~d 188 (196)
T TIGR00693 186 AAD 188 (196)
T ss_pred CCC
Confidence 554
No 146
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.45 E-value=0.0014 Score=58.47 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=70.8
Q ss_pred cccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
|+-.-.+.+.+.+-++++++.+ .|+.+|+=+--..- +-+++ ..+.+++.++|+|+|-...... ..|.+
T Consensus 98 ~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i-~~a~~~~~~agadfIKTsTG~~-~~gat-------- 165 (221)
T PRK00507 98 GALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEK-VKACEIAKEAGADFVKTSTGFS-TGGAT-------- 165 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHH-HHHHHHHHHhCCCEEEcCCCCC-CCCCC--------
Confidence 4444446788888888888765 46778873211111 11233 3356677899999776553221 12221
Q ss_pred CccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 98 PLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 98 ~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
.+.++-+.+.. .+++|.++|||.|.+|+.++++.||+-+-..+|
T Consensus 166 ---~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 166 ---VEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred ---HHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 34443333332 369999999999999999999999997765544
No 147
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.45 E-value=0.001 Score=56.63 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=54.9
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.+.|+|.|.++.......+.+ .-.+..++.+.++++. .++||++-||| +.+++.++++.|+|+|.+|++++.
T Consensus 111 ~~~~g~d~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 111 AEELGADYVGFGPVFPTPTKPG-----AGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred HhhcCCCEEEECCccCCCCCCC-----CCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 3567999999875432111110 0023347777777654 68999999999 579999999999999999999987
Q ss_pred CCc
Q 023442 148 NPW 150 (282)
Q Consensus 148 nP~ 150 (282)
++.
T Consensus 184 ~~~ 186 (196)
T cd00564 184 ADD 186 (196)
T ss_pred CCC
Confidence 665
No 148
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.43 E-value=0.0019 Score=60.14 Aligned_cols=97 Identities=8% Similarity=0.028 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
+++...++++++++.+ +++++++.+.+|+.. +..+ +.+.+++.|+.+|. . .+++-+|+
T Consensus 160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~----~A~~-~~~~l~~~~l~~iE--------e--------P~~~~d~~ 218 (316)
T cd03319 160 DLEDDIERIRAIREAAPDARLRVDANQGWTPE----EAVE-LLRELAELGVELIE--------Q--------PVPAGDDD 218 (316)
T ss_pred ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHH----HHHH-HHHHHHhcCCCEEE--------C--------CCCCCCHH
Confidence 3455567777777766 467888887777642 2222 34556677777762 0 11222477
Q ss_pred HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
.++++.+. .++||++++.+.+++++.++++ .++|.|.+-
T Consensus 219 ~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 219 GLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred HHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 77777664 6899999999999999999999 889998764
No 149
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.42 E-value=0.00097 Score=59.30 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
.+.+.++++...++|++..|||+|+++++++++.|||+|.+|..+..||..+
T Consensus 163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~ 214 (219)
T cd02812 163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAA 214 (219)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHH
Confidence 5677777664228999999999999999999999999999999999999864
No 150
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.41 E-value=0.0006 Score=64.61 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec---C---CcccCCCCcCCcCCCCC
Q 023442 26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS---R---KALLNGISPAENRTIPP 98 (282)
Q Consensus 26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~---R---t~~~~G~~~ad~~~i~~ 98 (282)
+.+.+.++.+++.. ++||.+.= . .+. +. ++-|.++|+|.|-|=- . |+...|..- |.
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaGN---V---~T~-e~----a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~------PQ 196 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAGN---V---VTY-EG----AKDLIDAGADAVKVGIGPGSICTTREVTGVGV------PQ 196 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEE---E----SH-HH----HHHHHHTT-SEEEESSSSSTTBHHHHHHSBSC------TH
T ss_pred HHHHHHHHHHHHhCCCceEEecc---c---CCH-HH----HHHHHHcCCCEEEEeccCCcccccccccccCC------cH
Confidence 44555566666555 35555421 0 122 22 2234579999999841 1 233344321 21
Q ss_pred ccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 99 LKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 99 ~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
...+.++ ++++ .+|||+-|||.+.-|+.++|..|||+||+|+-+-
T Consensus 197 --~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llA 244 (352)
T PF00478_consen 197 --LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLA 244 (352)
T ss_dssp --HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTT
T ss_pred --HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeeecccceeechhhc
Confidence 4444443 4443 7999999999999999999999999999997653
No 151
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.35 E-value=0.0029 Score=57.44 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhc---CCccEEEEec-CCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442 26 KFVGEAMSVIAAN---TNVPVSVKCR-IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 26 ~~~~eiv~~v~~~---~~ipvsvKiR-~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
+.+ +.++++++. .++|+.|..- .|.... .+.+. ....++.+.+.|+|+|-+.. .+ .
T Consensus 120 ~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~-~~~~~~~a~~~GADyikt~~-----~~------------~ 180 (258)
T TIGR01949 120 EQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPEL-VAHAARLGAELGADIVKTPY-----TG------------D 180 (258)
T ss_pred HHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHH-HHHHHHHHHHHCCCEEeccC-----CC------------C
Confidence 444 556666654 3788777332 011000 11222 22334566789999998641 11 1
Q ss_pred HHHHHHHHhcCCCceEEEccCCC--CHHHHHHHH----HcCCCEEEecHHhhhCCcc
Q 023442 101 YEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~--s~eda~~~l----~~g~DgVmIGRgal~nP~i 151 (282)
.+.+.++++. ..+||++.|||+ |.+++.+.+ +.|++|+.+||.++..+..
T Consensus 181 ~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 181 IDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred HHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 5666677664 479999999999 666555554 6999999999999988774
No 152
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.35 E-value=0.0011 Score=60.11 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|+++|+|--= |. + +++.+.++++. +++||...|||++ ++++++++.|||.|.||.
T Consensus 43 ~A~~~~~~Ga~~lHvVDL-----g~---------~-n~~~i~~i~~~-~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 43 YAKLYKDDGVKGCHVIML-----GP---------N-NDDAAKEALHA-YPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHcCCCEEEEEEC-----CC---------C-cHHHHHHHHHh-CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 355678999999987641 21 2 47888888875 5899999999998 999999999999999999
Q ss_pred HhhhCC
Q 023442 144 AAYQNP 149 (282)
Q Consensus 144 gal~nP 149 (282)
.++.||
T Consensus 106 ~av~~~ 111 (253)
T TIGR02129 106 WLFTKG 111 (253)
T ss_pred HHHhCC
Confidence 999994
No 153
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.34 E-value=0.0016 Score=71.09 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
.++-+.++|..+|+.. +.||+||+=.+-. +.+++. -+.++|+|.|+|.|...- .|-+|..-.....+.|+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~----vg~ia~----gvaka~aD~I~IdG~~GG-TGAap~~~~~~~GlP~e 1049 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPG----VGTIAT----GVAKAYADLITISGYDGG-TGASPLTSVKYAGSPWE 1049 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCC----ccHHHh----ChhhcCCCEEEEeCCCCC-cccccHHHHhhCCccHH
Confidence 4567888899998876 6899999864311 112221 234689999999986532 12222110011122266
Q ss_pred H-HH----HHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 103 Y-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 103 ~-i~----~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
+ +. .+.+.. -.|.+++.|++.|..|+.+++..|||.|.+||++|--=
T Consensus 1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lial 1103 (1485)
T PRK11750 1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVAL 1103 (1485)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHc
Confidence 4 32 233321 25899999999999999999999999999999997543
No 154
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.33 E-value=0.00041 Score=61.79 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=47.2
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
+++.+.+.++++...++|++..|||+|.++++++++.|||+|.+|..+..||..+
T Consensus 164 ~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~ 218 (223)
T TIGR01768 164 PVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKA 218 (223)
T ss_pred CcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHH
Confidence 4457777777664337999999999999999999999999999999999998764
No 155
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.30 E-value=0.0033 Score=57.37 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhc---CCccEEEEecC-CC--CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442 26 KFVGEAMSVIAAN---TNVPVSVKCRI-GV--DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 99 (282)
Q Consensus 26 ~~~~eiv~~v~~~---~~ipvsvKiR~-G~--d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~ 99 (282)
+.+.+.++++++. .++|+.+=... |. ....+.+++. ..++++.+.|+|.|-.. +.|
T Consensus 122 ~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~-~a~~~a~e~GAD~vKt~-----~~~------------ 183 (267)
T PRK07226 122 AEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVA-HAARVAAELGADIVKTN-----YTG------------ 183 (267)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHH-HHHHHHHHHCCCEEeeC-----CCC------------
Confidence 3345555555544 37787662110 11 1111222322 34566778999999443 111
Q ss_pred cHHHHHHHHhcCCCceEEEccCCC--CHHHHHHHH----HcCCCEEEecHHhhhCCcc
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~--s~eda~~~l----~~g~DgVmIGRgal~nP~i 151 (282)
..+.+.++++. ..+||++.|||. |.+++.+++ +.||+|+.+||.++..|..
T Consensus 184 ~~~~l~~~~~~-~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p 240 (267)
T PRK07226 184 DPESFREVVEG-CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDP 240 (267)
T ss_pred CHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCH
Confidence 14556666653 479999999999 999998887 5899999999999988774
No 156
>PLN02591 tryptophan synthase
Probab=97.29 E-value=0.0061 Score=55.29 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=36.9
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.++++ .+++||+..-||.|++|++++++.|||||.+|.+++
T Consensus 181 i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 181 LQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 455544 579999999999999999999999999999999886
No 157
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.28 E-value=0.0089 Score=51.96 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
+..+.++++.+++ .++++.+-+- +.. +..++ +. .+.+.|+|.+.++.... +. ...+..++.+
T Consensus 88 ~~~~~~~i~~~~~-~g~~~~~~~~-~~~--t~~~~----~~-~~~~~g~d~v~~~pg~~---~~------~~~~~~~~~i 149 (206)
T TIGR03128 88 DATIKGAVKAAKK-HGKEVQVDLI-NVK--DKVKR----AK-ELKELGADYIGVHTGLD---EQ------AKGQNPFEDL 149 (206)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEec-CCC--ChHHH----HH-HHHHcCCCEEEEcCCcC---cc------cCCCCCHHHH
Confidence 3456777777766 3788877531 111 11222 11 23467999999975321 11 0111235566
Q ss_pred HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++.+..+..+|...||| +++.+.++++.|+|+|.+||+++..+.
T Consensus 150 ~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 150 QTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred HHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence 666654445666668999 899999999999999999999877655
No 158
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.24 E-value=0.0019 Score=58.27 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.|+..++|--=.... |. +.+.+.+.++++.. .+||...|||+|.+|++.+++.|||-|++|..
T Consensus 37 a~~~~~~g~~~lhivDLd~a~-g~---------~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF-GG---------GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC-CC---------cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 445678899988876321111 21 22477888888764 69999999999999999999999999999999
Q ss_pred hhhCCccchhhh
Q 023442 145 AYQNPWYTLGHV 156 (282)
Q Consensus 145 al~nP~if~~~~ 156 (282)
++.||.++ .++
T Consensus 106 a~~~p~~~-~~~ 116 (243)
T TIGR01919 106 ALENPWWA-AAV 116 (243)
T ss_pred hhCCHHHH-HHH
Confidence 99999975 444
No 159
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.23 E-value=0.006 Score=54.26 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=51.3
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC--CCHHH----HHHHHHcCCCE
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAALRKGAHH 138 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI--~s~ed----a~~~l~~g~Dg 138 (282)
++.+.+.|+|.|-+.. + + ..+.++++++. ..+||++.||+ .|.+| +.++++.|++|
T Consensus 149 ~~~a~~~GaD~Ik~~~-~----~------------~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~g 210 (235)
T cd00958 149 ARIGAELGADIVKTKY-T----G------------DAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAG 210 (235)
T ss_pred HHHHHHHCCCEEEecC-C----C------------CHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 4556788999888742 1 1 15666677764 47899998887 67766 66677799999
Q ss_pred EEecHHhhhCCcc
Q 023442 139 VMVGRAAYQNPWY 151 (282)
Q Consensus 139 VmIGRgal~nP~i 151 (282)
|.+||.++..|..
T Consensus 211 v~vg~~i~~~~dp 223 (235)
T cd00958 211 VAVGRNIFQRPDP 223 (235)
T ss_pred EEechhhhcCCCH
Confidence 9999999988763
No 160
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.19 E-value=0.0026 Score=57.06 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+.+.|++.++|--=+... |. +.+.+.+.++.+.. ..||-..|||+|.+|++++++.|||-|.||.
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~-~~---------~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAE-GV---------GNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcC-CC---------cchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 3556778999999886322111 21 12367777887732 2499999999999999999999999999999
Q ss_pred HhhhCCccchhhh
Q 023442 144 AAYQNPWYTLGHV 156 (282)
Q Consensus 144 gal~nP~if~~~~ 156 (282)
.++.||.++ +++
T Consensus 104 ~a~~~p~~~-~~~ 115 (232)
T PRK13586 104 IVFTNFNLF-HDI 115 (232)
T ss_pred hhhCCHHHH-HHH
Confidence 999999975 554
No 161
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.18 E-value=0.0055 Score=55.38 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 64 IYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+++.|+++||..+---+-. +.-+|. . +-..++-+++ .+++||+.-+||.+++|+.++++.|||||++.
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl--------~--n~~~l~~i~e-~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGL--------Q--NLLNLQIIIE-NAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCC--------C--CHHHHHHHHH-cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 3566677777766543311 111222 1 1233444444 46899999999999999999999999999999
Q ss_pred HHhhh
Q 023442 143 RAAYQ 147 (282)
Q Consensus 143 Rgal~ 147 (282)
.|+..
T Consensus 219 SaIak 223 (267)
T CHL00162 219 TAVAQ 223 (267)
T ss_pred ceeec
Confidence 98863
No 162
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.15 E-value=0.00095 Score=59.85 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=45.3
Q ss_pred CccHHHHHHHHhcCCCc-eEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 98 PLKYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~i-pVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+.+.+.+.++++. .++ ||+..|||+|.+++++++..|||+|.+|..+..||.
T Consensus 169 ~~~~e~I~~v~~~-~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 169 PVPPEMVKAVKKA-LDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCHHHHHHHHHh-cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 3456777777664 567 999999999999999999999999999999999987
No 163
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.15 E-value=0.0035 Score=55.26 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 63 ~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
..+..++..|++.|.+-.-+ |. ..+.+.+.+.++++. .++|++..|||+|+++++++++.|||+|.+|
T Consensus 138 ~~a~aa~~~G~~~i~Le~~s----Ga-------~~~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 138 AYCLAAKYFGMKWVYLEAGS----GA-------SYPVNPETISLVKKA-SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHcCCCEEEEEcCC----CC-------CCCCCHHHHHHHHHh-hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45667778888888874322 21 122346778777764 4899999999999999999998899999987
No 164
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.14 E-value=0.0042 Score=54.34 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=67.0
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc-CCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-NGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~-~G~~~ad~~~ 95 (282)
+|+.+-.+.+.+.+-+.++++.+. ++.+|+-+..... +.++ ...+.+++.++|+|+|-.... +. .|.++
T Consensus 92 ~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l-~~~~-i~~a~ria~e~GaD~IKTsTG--~~~~~at~----- 161 (203)
T cd00959 92 IGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLL-TDEE-IIKACEIAIEAGADFIKTSTG--FGPGGATV----- 161 (203)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCC-CHHH-HHHHHHHHHHhCCCEEEcCCC--CCCCCCCH-----
Confidence 354444566777777888887764 4444543322211 2223 344678889999999977622 21 12111
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
-....+.+.++ ..+||-++|||.|.+++.++++.|||-+
T Consensus 162 ---~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 162 ---EDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred ---HHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 11233444444 3689999999999999999999888743
No 165
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0032 Score=56.11 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=79.1
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecC-C----CC-------CCCcHHHHHHHHHHHH
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G----VD-------DHDSYNQLCDFIYKVS 68 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~-G----~d-------~~~~~~e~~~~v~~~l 68 (282)
|+.|- .||. ..++-+.+|+++.++-+..-..+ =+-+-+|-+. | |. ....+ +..+. ++.+
T Consensus 93 l~aGA--DKVS----INsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~-d~~~W-a~~~ 164 (256)
T COG0107 93 LRAGA--DKVS----INSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL-DAVEW-AKEV 164 (256)
T ss_pred HHcCC--Ceee----eChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc-CHHHH-HHHH
Confidence 34444 5555 35778999999999998886654 2334444432 2 11 11112 22332 4567
Q ss_pred HhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 69 SLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 69 e~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
++.|+-.|-+.. |....+|+ | .+.++.+.. ..+||||++||.-++++..+.+. +.+|++..+
T Consensus 165 e~~GAGEIlLtsmD~DGtk~Gy---D--------l~l~~~v~~-~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAA 229 (256)
T COG0107 165 EELGAGEILLTSMDRDGTKAGY---D--------LELTRAVRE-AVNIPVIASGGAGKPEHFVEAFTEGKADAALAA 229 (256)
T ss_pred HHcCCceEEEeeecccccccCc---C--------HHHHHHHHH-hCCCCEEecCCCCcHHHHHHHHHhcCccHHHhh
Confidence 899999998875 43444443 1 555555554 47999999999999999999998 779987655
No 166
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.10 E-value=0.0061 Score=57.35 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
.++...+.++.+++...+.+.+ |... +. .+.+. .+.++|++.|.++... |.+ .. -.+.
T Consensus 68 ~~~~~~~~i~~vk~~l~v~~~~----~~~~--~~---~~~~~-~l~eagv~~I~vd~~~----G~~-~~-------~~~~ 125 (325)
T cd00381 68 SIEEQAEEVRKVKGRLLVGAAV----GTRE--DD---KERAE-ALVEAGVDVIVIDSAH----GHS-VY-------VIEM 125 (325)
T ss_pred CHHHHHHHHHHhccCceEEEec----CCCh--hH---HHHHH-HHHhcCCCEEEEECCC----CCc-HH-------HHHH
Confidence 3556666667766443333332 3221 11 22223 3446899999986522 221 00 1456
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.++++..+++||++ |++.|.++++.+++.|+|+|.+|
T Consensus 126 i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 126 IKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 677766666788887 99999999999999999999984
No 167
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.08 E-value=0.0029 Score=57.63 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=60.6
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|+++|+|--=.+ |. +.+++.+.++++ .++||-..|||++ ++++++++.|||-|+||.
T Consensus 48 ~A~~~~~~Ga~~lHvVDLdg---g~---------~~n~~~i~~i~~--~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 48 FAEMYKRDGLTGGHVIMLGA---DD---------ASLAAALEALRA--YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHCCCCEEEEEECCC---CC---------cccHHHHHHHHh--CCCCEEEeCCccH-HHHHHHHHcCCCEEEEch
Confidence 35667899999998863111 21 223777888877 4699999999996 999999999999999999
Q ss_pred HhhhC----Cccchhhh
Q 023442 144 AAYQN----PWYTLGHV 156 (282)
Q Consensus 144 gal~n----P~if~~~~ 156 (282)
.|+.| |.++ .++
T Consensus 113 ~Av~~~~~~p~~v-~~~ 128 (262)
T PLN02446 113 YVFRDGQIDLERL-KDL 128 (262)
T ss_pred HHHhCCCCCHHHH-HHH
Confidence 99999 8864 444
No 168
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0035 Score=56.29 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=63.4
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++...+.|+..|++--=+.-..| .+.+.+.+.++++. .++||-..|||+|.++++++++.|++-|.+|..
T Consensus 37 a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~-~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 37 AKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEA-TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred HHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHh-CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence 44567899999987432211112 12346788888876 589999999999999999999999999999999
Q ss_pred hhhCCccchhhhH
Q 023442 145 AYQNPWYTLGHVD 157 (282)
Q Consensus 145 al~nP~if~~~~~ 157 (282)
++.||.++ .++-
T Consensus 107 av~~p~~v-~~~~ 118 (241)
T COG0106 107 AVKNPDLV-KELC 118 (241)
T ss_pred eecCHHHH-HHHH
Confidence 99999975 5543
No 169
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.01 E-value=0.0036 Score=55.99 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=62.3
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+++.|++.|+|--=++. .|. +.+.+.+.++.+. ..+||...|||+|.+|+++++..||+-|.||.
T Consensus 40 ~a~~~~~~g~~~l~i~DLd~~-~~~---------~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 40 VARAYKELGFRGLYIADLDAI-MGR---------GDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred HHHHHHHCCCCEEEEEeCccc-cCC---------CccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 345677889999998743332 122 1236777788775 47999999999999999999999999999999
Q ss_pred HhhhCCccchhhh
Q 023442 144 AAYQNPWYTLGHV 156 (282)
Q Consensus 144 gal~nP~if~~~~ 156 (282)
.++.| .++ .++
T Consensus 109 ~~~~~-~~~-~~~ 119 (233)
T cd04723 109 ETLPS-DDD-EDR 119 (233)
T ss_pred eeccc-hHH-HHH
Confidence 99999 764 444
No 170
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.01 E-value=0.01 Score=54.00 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.+.++.+ ..+.||+..|||.|++++.++.+.|||||.+|.+++
T Consensus 187 ~~~i~~lr~-~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 187 NELVKRLKA-YSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHHHHHHh-hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 566666665 457899999999999999999999999999999874
No 171
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.01 E-value=0.0016 Score=61.61 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=56.8
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
++.+++.|+|.|++++-.. .|..... .-.+.-...+.++++.+ + ||||+.|||.+.+++..++..|||||-+|.
T Consensus 140 A~~~~~~G~d~vI~~g~eA--GGH~g~~--~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT 214 (336)
T COG2070 140 ALKAERAGADAVIAQGAEA--GGHRGGV--DLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQMGT 214 (336)
T ss_pred HHHHHhCCCCEEEecCCcC--CCcCCCC--CCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHHhhh
Confidence 3456788999999987532 2321110 00111144556666654 6 999999999999999999999999999999
Q ss_pred HhhhCCc
Q 023442 144 AAYQNPW 150 (282)
Q Consensus 144 gal~nP~ 150 (282)
.++.-..
T Consensus 215 ~Fl~t~E 221 (336)
T COG2070 215 RFLATKE 221 (336)
T ss_pred hhhcccc
Confidence 8876543
No 172
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.99 E-value=0.0035 Score=56.14 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.+.+.++...++|+|..|||+|.+++.++.+.|||.|.+|-.+..||++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-H
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchH
Confidence 34456666667999999999999999999999999999999999999984
No 173
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.98 E-value=0.0038 Score=54.07 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=50.1
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.|+|.+-+++ |.. ....+++.++.+.++++|+++.||| |++++.++++.|+++|.++++++.
T Consensus 122 ~~~Gadyv~~Fp-t~~-------------~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 122 WQAGASCVKVFP-VQA-------------VGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHCCCCEEEECc-CCc-------------ccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 468999998854 211 1125667777766668999999999 889999999999999999988754
No 174
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.97 E-value=0.008 Score=59.03 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC--Ccc
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP--PLK 100 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~--~~~ 100 (282)
.++-+.+.|..+++.. ..+|+||+=.+. ....+ +--..++++|.|+|.|-.. |.+.+.+..+. .+-
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~----~v~~i----aagvakA~AD~I~IdG~~G---GTGAsP~~~~~~~GiP 354 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEH----GVGTI----AAGVAKAGADVITIDGADG---GTGASPLTSIDHAGIP 354 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEeccc----chHHH----HhhhhhccCCEEEEcCCCC---cCCCCcHhHhhcCCch
Confidence 3577888999999875 467999985432 12222 2224579999999987432 22222221111 122
Q ss_pred HHHH----HH-HHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 101 YEYY----YA-LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 101 ~~~i----~~-l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
|+.- .+ +..+. ..+.|++.|++.|..|+..++..|||.|-+|+++|-
T Consensus 355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~li 408 (485)
T COG0069 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHH
Confidence 6642 12 22221 257899999999999999999999999999999864
No 175
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.96 E-value=0.0039 Score=62.44 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-----------HHHHHHH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL 132 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-----------eda~~~l 132 (282)
+++.+.+.|+|.|++--=+....+. .. ....++.+.+++++ ..+||...|||+|. +++++++
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~~~--~~----~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRDFP--LG----DLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCc--cc----chhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHHHHHHH
Confidence 3566789999999886322211121 11 11237778888775 58999999999998 6689999
Q ss_pred HcCCCEEEecHHhhhCC
Q 023442 133 RKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 133 ~~g~DgVmIGRgal~nP 149 (282)
..|||-|.||..|+.||
T Consensus 345 ~~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 345 RSGADKISIGSDAVYAA 361 (538)
T ss_pred HcCCCEEEEChHHHhCh
Confidence 99999999999999987
No 176
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.96 E-value=0.013 Score=55.21 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++...+.++.+++.+++||.++++. .+ .++..+ +++.++++|+|+|.+|.-- ....+.. +...+...++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g--~~---~~e~~~-~a~~~~~agad~ielN~scpp~~~~~~---g~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG--SS---AGGWVD-YARQIEQAGADALELNIYYLPTDPDIS---GAEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc--CC---HHHHHH-HHHHHHHcCCCEEEEeCCCCCCCCCCc---cccHHHHHHHH
Confidence 4666777777777778999999964 22 234443 4556788999999997421 0000110 01111112455
Q ss_pred HHHHHhcCCCceEEEc--cCCCCHHHHHHHHH-cCCCEEEe
Q 023442 104 YYALLRDFPDLTFTLN--GGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 104 i~~l~~~~~~ipVi~n--GdI~s~eda~~~l~-~g~DgVmI 141 (282)
+.++++ ..++||+.. +++.+..++.+.++ .|+|+|.+
T Consensus 157 l~~v~~-~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 157 LRAVKS-AVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHh-ccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 556655 358999865 66666777777776 99999966
No 177
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.94 E-value=0.0066 Score=53.72 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+++.|+|+|.+-.=..+ +.+.. . ++..++.++.+.+ ...+|+++=||| +++.+.+++++|+|||.+-|+++.
T Consensus 120 A~~~g~DYv~~GpifpT----~tK~~-~-~~~G~~~l~~~~~-~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 120 AEELGADYVGLGPIFPT----STKPD-A-PPLGLEGLREIRE-LVNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHhcCCCEEEECCcCCC----CCCCC-C-CccCHHHHHHHHH-hCCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 45677888877431100 00111 1 4566888876655 456999999998 899999999999999999999998
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
++..
T Consensus 192 a~d~ 195 (211)
T COG0352 192 AADP 195 (211)
T ss_pred CCCH
Confidence 8775
No 178
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.018 Score=50.81 Aligned_cols=108 Identities=22% Similarity=0.130 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
+..-+...++.-++ .++-+.+-+=-.|+ .++ ..+.+++.|++.+.+| +|.....|.++. |+
T Consensus 91 ~~~TI~~~i~~A~~-~~~~v~iDl~~~~~----~~~----~~~~l~~~gvd~~~~H~g~D~q~~G~~~~---------~~ 152 (217)
T COG0269 91 DDATIKKAIKVAKE-YGKEVQIDLIGVWD----PEQ----RAKWLKELGVDQVILHRGRDAQAAGKSWG---------ED 152 (217)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeecCCC----HHH----HHHHHHHhCCCEEEEEecccHhhcCCCcc---------HH
Confidence 45555666666544 36667776632232 222 2456677999999999 677655675431 45
Q ss_pred HHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 103 YYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 103 ~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.+..+++.. ....|-..||| +++++..+...|+|-|.+||++-+...
T Consensus 153 ~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 153 DLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred HHHHHHHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCC
Confidence 555555432 23789899998 899999999999999999999866555
No 179
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.89 E-value=0.0047 Score=53.40 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=49.2
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.++|+|.|-+..-.. ...+++..+...++++|+++.||| |++.+.++++.|+|+|.++..+.
T Consensus 114 ~~~Gad~i~~~p~~~---------------~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 114 LELGADIVKLFPAEA---------------VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHCCCCEEEEcCCcc---------------cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 478999998853211 114566666655667999999999 99999999999999999998887
No 180
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.89 E-value=0.0086 Score=54.91 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=66.6
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 92 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad 92 (282)
++.+ |-+-++.|+.+ ++|++.+++||.-++|.|+ +.| ++.+.++|+|.|.-+.|.+
T Consensus 43 ~~~~-~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-----~~E-----a~~L~eaGvDiIDaT~r~r--------- 98 (283)
T cd04727 43 RAAG-GVARMADPKMI----KEIMDAVSIPVMAKVRIGH-----FVE-----AQILEALGVDMIDESEVLT--------- 98 (283)
T ss_pred hhcC-CeeecCCHHHH----HHHHHhCCCCeEEeeehhH-----HHH-----HHHHHHcCCCEEeccCCCC---------
Confidence 3444 78888898884 5556667999999999875 223 2456789999996444422
Q ss_pred cCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 93 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 93 ~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
| ..+.+..++.++ ++|++ .|+.|.+++.+..+.|+|.|
T Consensus 99 -----P-~~~~~~~iK~~~-~~l~M--AD~stleEal~a~~~Gad~I 136 (283)
T cd04727 99 -----P-ADEEHHIDKHKF-KVPFV--CGARNLGEALRRISEGAAMI 136 (283)
T ss_pred -----c-HHHHHHHHHHHc-CCcEE--ccCCCHHHHHHHHHCCCCEE
Confidence 1 134455666656 66665 48999999999999999955
No 181
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.84 E-value=0.045 Score=50.07 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=36.9
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+.++. +..++||...+||.|+++++++.+.|||||.+|.+++.
T Consensus 194 i~~ir-~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 194 IETIK-KMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred HHHHH-HhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 34444 45789999999999999999999899999999999865
No 182
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.82 E-value=0.0059 Score=52.29 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
.+.+.|+|++.+.+=... .+ +. ..++..|+.+.++++. .++||++-||| |++++.++.++|++||.+-|++
T Consensus 110 ~a~~~g~dYv~~gpvf~T---~s-k~--~~~~~g~~~l~~~~~~-~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 110 EAEELGADYVFLGPVFPT---SS-KP--GAPPLGLDGLREIARA-SPIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHHHCTTSEEEEETSS-----SS-SS--S-TTCHHHHHHHHHHH-TSSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred HhhhcCCCEEEECCccCC---CC-Cc--cccccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 345789999988752111 10 11 1156678888888775 47999999999 8999999999999999998874
No 183
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.81 E-value=0.011 Score=52.32 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
+++.|+|++.+.+=.... + +.. ..++..|+.+.++.+...++||++=||| +.+++.+++++|++||.+-++++.
T Consensus 118 A~~~gaDYi~lgpvf~T~--t--K~~-~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~ 191 (211)
T PRK03512 118 ALAARPSYIALGHVFPTQ--T--KQM-PSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQ 191 (211)
T ss_pred HhhcCCCEEEECCccCCC--C--CCC-CCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhC
Confidence 346789988886421110 0 100 1234557777777665457999999999 699999999999999999999987
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
.+..
T Consensus 192 ~~d~ 195 (211)
T PRK03512 192 AADW 195 (211)
T ss_pred CCCH
Confidence 7664
No 184
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.81 E-value=0.0072 Score=53.63 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=38.7
Q ss_pred HHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 106 ALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 106 ~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+.+++ ..++||++-|+|.+++++..+++.|+|||.+|++++.-+.
T Consensus 165 ~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 165 EAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKD 210 (223)
T ss_pred HHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcC
Confidence 33444 2479999999999999999999899999999999998776
No 185
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.70 E-value=0.0086 Score=56.87 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcC-------CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 25 PKFVGEAMSVIAANT-------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 25 p~~~~eiv~~v~~~~-------~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
++.-.+.++.+++.. +..+.|-..+|..+ +.. +. + +.+.++|+|.|.|..-. |.+..
T Consensus 72 ~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~-er---~-~~L~~agvD~ivID~a~----g~s~~------ 135 (352)
T PF00478_consen 72 IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDF-ER---A-EALVEAGVDVIVIDSAH----GHSEH------ 135 (352)
T ss_dssp HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHH-HH---H-HHHHHTT-SEEEEE-SS----TTSHH------
T ss_pred HHHHHHHHhhhccccccccccccccceEEEEecCCH-HHH-HH---H-HHHHHcCCCEEEccccC----ccHHH------
Confidence 455666677776531 23333444444433 122 22 2 23457999999997532 32211
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
-.+.++.+++.++++||| .|+|-|.+.++.+++.|+|+|-+|=|
T Consensus 136 --~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 136 --VIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp --HHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred --HHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 145677888888889997 57799999999999999999999955
No 186
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.69 E-value=0.014 Score=51.70 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=69.0
Q ss_pred ccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
+|..+-.+.+.+.+-++++++.+ ++|+-|=+=.+.-. -+++. .+.+++.++|+|+|-.+.... ..|.++
T Consensus 93 ~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~---~~ei~-~a~~ia~eaGADfvKTsTGf~-~~gat~----- 162 (211)
T TIGR00126 93 IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT---DEEIR-KACEICIDAGADFVKTSTGFG-AGGATV----- 162 (211)
T ss_pred hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC---HHHHH-HHHHHHHHhCCCEEEeCCCCC-CCCCCH-----
Confidence 45555567888888889988877 44544422223211 13444 456788899999997764211 022111
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
.....+.+.++ ..++|-+.|||+|.+++.++++.|++-+-.
T Consensus 163 ---~dv~~m~~~v~--~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 163 ---EDVRLMRNTVG--DTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred ---HHHHHHHHHhc--cCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 11233444444 268999999999999999999988775433
No 187
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.61 E-value=0.014 Score=55.33 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=53.8
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.+.|+|+|.+.+-... .+ ..+ .++..++.+..+++. .++||++-||| +.+++.+++++|+|||.++++++..
T Consensus 257 ~~~GaDYI~lGPvf~T--~t--Kp~--~~~~Gle~l~~~~~~-~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 257 IAEGADYIGVGPVFPT--PT--KPG--KAPAGLEYLKYAAKE-APIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHcCCCEEEECCCcCC--CC--CCC--CCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCC
Confidence 4679999888642111 11 011 124458888777764 47999999999 5999999999999999999999875
Q ss_pred Cc
Q 023442 149 PW 150 (282)
Q Consensus 149 P~ 150 (282)
+.
T Consensus 329 ~d 330 (347)
T PRK02615 329 ED 330 (347)
T ss_pred CC
Confidence 54
No 188
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.60 E-value=0.037 Score=50.11 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
+++.-.+++++|++.+ ++++.+...-+|+. ++..+ +.+.+++.|+++|.- .+++-++
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iEe----------------P~~~~d~ 169 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTP----KQAIR-ALRALEDLGLDYVEQ----------------PLPADDL 169 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCH----HHHHH-HHHHHHhcCCCEEEC----------------CCCcccH
Confidence 3455556677777665 45666666656653 22222 234556666666631 0112235
Q ss_pred HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+...++.+. .++||.+++.+.+++++.++++ ..+|.|++
T Consensus 170 ~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 170 EGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNI 209 (265)
T ss_pred HHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 666677654 5899999999999999999998 67998876
No 189
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.56 E-value=0.0097 Score=53.22 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 65 YKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
++.|+++|+..+---+-. +.-+|. .+-..++.++++. ++|||.-+||-+++|+.++++.|||+|++..
T Consensus 137 akrL~d~GcaavMPlgsPIGSg~Gi----------~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 137 AKRLEDAGCAAVMPLGSPIGSGRGI----------QNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHTT-SEBEEBSSSTTT---S----------STHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHCCCCEEEecccccccCcCC----------CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 556677777766544321 111222 1234455566554 8999999999999999999999999999998
Q ss_pred Hhhh
Q 023442 144 AAYQ 147 (282)
Q Consensus 144 gal~ 147 (282)
++-.
T Consensus 206 AiA~ 209 (247)
T PF05690_consen 206 AIAK 209 (247)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8743
No 190
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.54 E-value=0.017 Score=51.47 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=42.0
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
..+.+.++.+...++||.+-||| |.+.+.++.+.|+|+|.+|+++...+..
T Consensus 161 ~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~ 211 (229)
T PLN02334 161 MMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDY 211 (229)
T ss_pred HHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 35556666554457899999999 8999999999999999999998877663
No 191
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.50 E-value=0.0056 Score=52.48 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=52.6
Q ss_pred cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442 12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 91 (282)
Q Consensus 12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a 91 (282)
.++.+ |-+-|.||..+.+|.++| ++||..|.|+|. +.| +++|+..|+|+|.=|-= .+|+
T Consensus 48 iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----fvE-----AqiLealgVD~IDESEV------LTpA 106 (208)
T PF01680_consen 48 IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----FVE-----AQILEALGVDYIDESEV------LTPA 106 (208)
T ss_dssp HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------HHH-----HHHHHHTT-SEEEEETT------S--S
T ss_pred HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----eeh-----hhhHHHhCCceeccccc------cccc
Confidence 34455 889999999988877765 899999999984 222 56889999999976631 2345
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 92 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 92 d~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
|... .+-+..-++|++.. -++.-.+.+-+..|+..+
T Consensus 107 D~~~----------HI~K~~F~vPFVcG--arnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 107 DEEN----------HIDKHNFKVPFVCG--ARNLGEALRRIAEGAAMI 142 (208)
T ss_dssp -SS--------------GGG-SS-EEEE--ESSHHHHHHHHHTT-SEE
T ss_pred cccc----------cccchhCCCCeEec--CCCHHHHHhhHHhhhhhh
Confidence 4321 11122237887642 357777776666676644
No 192
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.47 E-value=0.015 Score=51.16 Aligned_cols=71 Identities=18% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.++++|+++|.+..-.....|. .+.+..+.+ .+++||+.-|.|.+.++++.+.+.|||+|.++-
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~~~g~------------~~~~~~i~~-~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKYFQGS------------LEDLRAVRE-AVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred HHHHHHHcCCCEEEEEeCccccCCC------------HHHHHHHHH-hcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 3556789999999998655443332 344545544 358999988889999999999999999999886
Q ss_pred Hhhh
Q 023442 144 AAYQ 147 (282)
Q Consensus 144 gal~ 147 (282)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 6654
No 193
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=96.46 E-value=0.021 Score=49.68 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=54.0
Q ss_pred HhCCCCEEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~-G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal 146 (282)
...|+|++.+...+.... |.+ ++..|+.+.++. .++|+++.||| |++.+.++++.+ ++||-+.+|+.
T Consensus 117 ~~~~aD~il~dt~~~~~~Gg~g-------~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 117 YAGEVDAILLDSKSGGGGGGTG-------KTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred ccccCCEEEEcCCCCCCCCCCc-------ceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence 357899998876654221 121 234577765553 47899999999 999999999966 99999999998
Q ss_pred hCCcc
Q 023442 147 QNPWY 151 (282)
Q Consensus 147 ~nP~i 151 (282)
..|-.
T Consensus 186 ~~pg~ 190 (203)
T cd00405 186 TSPGI 190 (203)
T ss_pred CCCCC
Confidence 88764
No 194
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.44 E-value=0.049 Score=50.06 Aligned_cols=102 Identities=17% Similarity=0.304 Sum_probs=64.6
Q ss_pred ccccCCHH-----HHHHHHHHHhhcCC--ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442 19 VSLMLDPK-----FVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 91 (282)
Q Consensus 19 s~Ll~~p~-----~~~eiv~~v~~~~~--ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a 91 (282)
+.|.++-. -+.+.++.+++... .++.|=+ ++.++..+ +.++|+|.|-+-.- +
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv-------~tleea~~-----A~~~GaDiI~LDn~-------~-- 212 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIEC-------ESLEEAKN-----AMNAGADIVMCDNM-------S-- 212 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEe-------CCHHHHHH-----HHHcCCCEEEECCC-------C--
Confidence 44555543 33456666666542 3455533 24555332 23799998865331 1
Q ss_pred CcCCCCCccHHHHHHHHhc----CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 92 ENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 92 d~~~i~~~~~~~i~~l~~~----~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+.+.+.++. .+++.+.++|+| |++.+.++.++|+|.|.+|.....-|++
T Consensus 213 ---------~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 213 ---------VEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATWI 266 (273)
T ss_pred ---------HHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 3444444331 357889999999 9999999999999999999765545554
No 195
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.40 E-value=0.0096 Score=53.17 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhhcC---CccEEEEecCCCCCC---CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 24 DPKFVGEAMSVIAANT---NVPVSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~---~ipvsvKiR~G~d~~---~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
+.+.+.+-++++++.+ ++||.+=.-+ .+.. +.-.+.+...++++.++|+|.|-...... .|.+.
T Consensus 106 ~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~------- 175 (236)
T PF01791_consen 106 NEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATP------- 175 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHH-------
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccH-------
Confidence 3455555566665544 6787775322 1110 01123445567888899999998875311 22211
Q ss_pred CccHHHHHHHHhcCCCce----EEEccCC------CCHHHHHHHHHcCC--CEEEecHHhhh
Q 023442 98 PLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVNAALRKGA--HHVMVGRAAYQ 147 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ip----Vi~nGdI------~s~eda~~~l~~g~--DgVmIGRgal~ 147 (282)
...+.+.++.+.. .+| |.++||| .+.+++.++++.|| -|++.||.++.
T Consensus 176 -~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 176 -EDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -HHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred -HHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 1134455666542 567 9999999 99999999999999 89999998764
No 196
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.38 E-value=0.025 Score=50.35 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=52.8
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
++.|+|+|.+-+=. ... .. ..+|...+.+..+++. .++||++-||| |.+++.+++++|+|||.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~---t~t--K~--~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLG---ADN--KP--EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCC---CCC--CC--CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 46788888875411 000 00 0133445666555553 58999999999 9999999999999999999999876
Q ss_pred Ccc
Q 023442 149 PWY 151 (282)
Q Consensus 149 P~i 151 (282)
+..
T Consensus 199 ~dp 201 (221)
T PRK06512 199 HDP 201 (221)
T ss_pred CCH
Confidence 664
No 197
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.38 E-value=0.023 Score=51.77 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC
Q 023442 56 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 135 (282)
Q Consensus 56 ~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g 135 (282)
++++.++. .....++|+|+|+|.. .|. +..|+.+.++++..+++||+.+||| |++.+.++++.
T Consensus 158 ~~~e~a~~---~~~~~~aDavivtG~~---TG~---------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~- 220 (257)
T TIGR00259 158 DLESIALD---TVERGLADAVILSGKT---TGT---------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI- 220 (257)
T ss_pred CHHHHHHH---HHHhcCCCEEEECcCC---CCC---------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-
Confidence 45554432 2334559999999854 243 2238888777654567999999998 89999999985
Q ss_pred CCEEEecHHhhhCCcc
Q 023442 136 AHHVMVGRAAYQNPWY 151 (282)
Q Consensus 136 ~DgVmIGRgal~nP~i 151 (282)
||||.+|.++= +|-.
T Consensus 221 adGviVgS~~K-~~G~ 235 (257)
T TIGR00259 221 ADGVIVATTIK-KDGV 235 (257)
T ss_pred CCEEEECCCcc-cCCc
Confidence 99999998865 5443
No 198
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.36 E-value=0.017 Score=56.26 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442 28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 107 (282)
Q Consensus 28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l 107 (282)
+.++++.+++ .+.++.+.+ ++.. +..+. ++.+.+.|+|.|.+|.-.. +. ..++..++.++++
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~-~s~~--t~~e~-----~~~a~~~GaD~I~~~pg~~---~~------~~~~~~~~~l~~l 157 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL-INVP--DPVKR-----AVELEELGVDYINVHVGID---QQ------MLGKDPLELLKEV 157 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe-cCCC--CHHHH-----HHHHHhcCCCEEEEEeccc---hh------hcCCChHHHHHHH
Confidence 4566666665 366665532 1111 11221 2334578999998884211 00 0011225677777
Q ss_pred HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 108 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 108 ~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
++. .++||++-||| +.+.+.++++.|+|+|.+||+++..+..
T Consensus 158 ~~~-~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~ 199 (430)
T PRK07028 158 SEE-VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADV 199 (430)
T ss_pred Hhh-CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCH
Confidence 654 46999999999 7899999999999999999999877653
No 199
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.32 E-value=0.025 Score=49.84 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=50.6
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.|+|.+.+.+- ..+..+++..+++.++ ++|+++.||| |.+.+.++++.|+|+|.++++++.
T Consensus 121 ~~~Gad~vk~Fpa---------------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 121 LRAGAQALKLFPA---------------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHcCCCEEEECCC---------------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 4678888876331 1123677777776664 6999999999 999999999999999999999976
Q ss_pred CC
Q 023442 148 NP 149 (282)
Q Consensus 148 nP 149 (282)
..
T Consensus 185 ~~ 186 (206)
T PRK09140 185 PG 186 (206)
T ss_pred cc
Confidence 43
No 200
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.31 E-value=0.015 Score=57.84 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=49.7
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.++|++.|.|..- .|.+.. .|+.+.++++.++++||++ |+|.|.++++.+++.|||+|.+|
T Consensus 247 ~~l~~ag~d~i~id~a----~G~s~~--------~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 247 AALIEAGVDVLVVDSS----QGNSIY--------QIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHCCCCEEEEecC----CCCchH--------HHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 4456899999998652 232211 2677888888778888877 99999999999999999999865
No 201
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.30 E-value=0.017 Score=56.14 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=36.1
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+||||+.|||.|++++..++..|||+|++|...+.-+.-
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 699999999999999999999999999999999886653
No 202
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.29 E-value=0.074 Score=49.37 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred hCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC--CCCHHHHHHHHHcCCCEEEecHHh
Q 023442 70 LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 70 ~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd--I~s~eda~~~l~~g~DgVmIGRga 145 (282)
+.|+|+|.+.-.+. .|.+. .++++++.+.++.+...++|+++-|+ | +.+++.++++.|++.|-|++.+
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~-------~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPEN-------WEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HcCCCEEeeccccccccCCCC-------CCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHH
Confidence 68999998763321 23221 13577998888877643699999999 8 7899999999999999999999
Q ss_pred hhCC
Q 023442 146 YQNP 149 (282)
Q Consensus 146 l~nP 149 (282)
..+|
T Consensus 236 ~~~~ 239 (293)
T PRK07315 236 QIAF 239 (293)
T ss_pred HHHH
Confidence 8743
No 203
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.21 E-value=0.086 Score=48.86 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=35.4
Q ss_pred CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+++|+.+.||| |.+.+.++.++|+|+|.+|.....-|++
T Consensus 241 ~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 241 NPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPWL 280 (288)
T ss_pred CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCcc
Confidence 468999999999 7999999999999999999877767764
No 204
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.21 E-value=0.045 Score=48.48 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=49.7
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.++|+|.|-+.+... .| .++++.+..-++++|+++.||| |.+.+.++++.|+++|.+|..++
T Consensus 126 ~~~Gad~vklFPa~~--~G-------------~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 126 LEAGSEIVKLFPGST--LG-------------PSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHcCCCEEEECCccc--CC-------------HHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 479999999865221 11 4566677666778999999999 68999999999999999998885
No 205
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.20 E-value=0.016 Score=52.78 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=41.0
Q ss_pred cHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 100 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 100 ~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.+...++....| ++.+|+-+||.|++|+..+...|+|||.||.++|..|..
T Consensus 195 d~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 195 DLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp HTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSH
T ss_pred ChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 3444556655443 577899999999999999999999999999999999985
No 206
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.17 E-value=0.023 Score=55.55 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=35.8
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.|||++.|||.|++++..++..|||+|.+|..++.-+.-
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 689999999999999999999999999999999876553
No 207
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.16 E-value=0.022 Score=50.65 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=59.1
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEEe
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMV 141 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVmI 141 (282)
+++.+.+.|++.|+|--=++. .|. +.+++.+.+++++ +|+...|||+|.+|+++++. .+||-|.+
T Consensus 41 ~a~~~~~~g~~~l~ivDLd~~-~~~---------~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvi 107 (221)
T TIGR00734 41 AAKVIEEIGARFIYIADLDRI-VGL---------GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVV 107 (221)
T ss_pred HHHHHHHcCCCEEEEEEcccc-cCC---------cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEee
Confidence 345567899999987632221 121 2247778888774 48999999999999999965 36999999
Q ss_pred cHHhhhCCccchhhh
Q 023442 142 GRAAYQNPWYTLGHV 156 (282)
Q Consensus 142 GRgal~nP~if~~~~ 156 (282)
|..++.||.++ .++
T Consensus 108 gT~a~~~p~~l-~~~ 121 (221)
T TIGR00734 108 ATETLDITELL-REC 121 (221)
T ss_pred cChhhCCHHHH-HHh
Confidence 99999999964 443
No 208
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.11 E-value=0.11 Score=47.84 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=57.4
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc--CCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~~g~DgVmIGRga 145 (282)
.++.|+|+|.+.-.+..-.. + .-|++.++.+.++.+. .++|+++-| || +.+++.++++.|+++|-+.+++
T Consensus 162 ~~~tg~DyLAvaiG~~hg~~--~----~~~~l~~~~L~~i~~~-~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 162 AEETDVDALAVAIGNAHGMY--N----GDPNLRFDRLQEINDV-VHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATAT 233 (281)
T ss_pred HHhhCCCEEEEccCCCCCCC--C----CCCccCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHH
Confidence 45679999998544321111 1 1256779999888775 589999999 98 8899999999999999999999
Q ss_pred hhCCc
Q 023442 146 YQNPW 150 (282)
Q Consensus 146 l~nP~ 150 (282)
..+|.
T Consensus 234 ~~a~~ 238 (281)
T PRK06806 234 FNSVI 238 (281)
T ss_pred HHHHH
Confidence 98643
No 209
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.00 E-value=0.058 Score=50.80 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=61.4
Q ss_pred cccC-CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC--CEEEEecCCcccCCCCcCCcCCC
Q 023442 20 SLML-DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTI 96 (282)
Q Consensus 20 ~Ll~-~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv--~~i~VH~Rt~~~~G~~~ad~~~i 96 (282)
.+.+ +++.....++.++.. . +.|-+-+|... +..+ .+..+ .++|+ |.|.+..-. |.+.
T Consensus 65 ~~~k~~~e~~~~~~r~~~~~-~--l~v~~~vg~~~-~~~~----~~~~L-v~ag~~~d~i~iD~a~----gh~~------ 125 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMHEQ-G--LIASISVGVKD-DEYD----FVDQL-AAEGLTPEYITIDIAH----GHSD------ 125 (326)
T ss_pred EEecCCHHHHHHHHHhcccc-c--cEEEEEecCCH-HHHH----HHHHH-HhcCCCCCEEEEECCC----CchH------
Confidence 4556 777766666554322 2 23444444432 1222 23333 46754 999994321 1110
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
.-.+.+.++++.++++|| ..|+|.|.+++..+.+.|||+|.+|
T Consensus 126 --~~~e~I~~ir~~~p~~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 126 --SVINMIQHIKKHLPETFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred --HHHHHHHHHHhhCCCCeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 014567777777777775 5678999999999999999999877
No 210
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.96 E-value=0.038 Score=47.70 Aligned_cols=71 Identities=23% Similarity=0.174 Sum_probs=49.7
Q ss_pred HhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
...|++.+.++ +++....| .+...+.+.++.+. +++||+..||| |++++.++++.|+|+|.+|+++..
T Consensus 123 ~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 123 LKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-cCCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhcC
Confidence 35688887775 33321111 01124556566543 57999999999 599999999999999999999876
Q ss_pred CCc
Q 023442 148 NPW 150 (282)
Q Consensus 148 nP~ 150 (282)
.+.
T Consensus 192 ~~d 194 (202)
T cd04726 192 AAD 194 (202)
T ss_pred CCC
Confidence 554
No 211
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.94 E-value=0.022 Score=55.89 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=48.5
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
.+.++|++.|.|..-. |.+. --++.++++++.++++||++ |+|.|+++++.+++.|||+|-+|
T Consensus 231 ~L~~aG~d~I~vd~a~----g~~~--------~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSH----GHSI--------YVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHhCCCEEEEECCC----CcHh--------HHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 3457999999986522 2211 01567788877778999988 99999999999999999999765
No 212
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.91 E-value=0.031 Score=55.29 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
+.|.++|++.|.+..-. |.+ ..-.+.++.+++.++++|||+ |.+.|.+.++.+++.|||+|-+|=|
T Consensus 231 ~~Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 231 KALLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCc
Confidence 34567999999985421 111 001456777877788999999 8899999999999999999876633
No 213
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.90 E-value=0.048 Score=49.37 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=57.8
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.++++|+++|.|-.-..+++|. ++.+..+.+. .++||+..+-|.++.++.+....|||+|++==
T Consensus 66 ~A~~y~~~GA~aISVlTe~~~F~Gs------------~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~ 132 (247)
T PRK13957 66 IAKTYETLGASAISVLTDQSYFGGS------------LEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIV 132 (247)
T ss_pred HHHHHHHCCCcEEEEEcCCCcCCCC------------HHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEH
Confidence 4556789999999998765555664 6777676654 68999999999999999999999999997765
Q ss_pred HhhhC
Q 023442 144 AAYQN 148 (282)
Q Consensus 144 gal~n 148 (282)
+++..
T Consensus 133 ~~L~~ 137 (247)
T PRK13957 133 RILTP 137 (247)
T ss_pred hhCCH
Confidence 55543
No 214
>PRK06801 hypothetical protein; Provisional
Probab=95.75 E-value=0.13 Score=47.58 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC--CCCHHHHHHHHHcCCCEEEe
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd--I~s~eda~~~l~~g~DgVmI 141 (282)
+..++.|+|.|.++-.|. .|.+ .++++++.+.++.+. .++|++.-|+ | +.+++.++++.|++.|=|
T Consensus 163 ~f~~~tgvD~LAvaiGt~Hg~y~~--------~~~l~~e~l~~i~~~-~~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 163 DFVDRTGIDALAVAIGNAHGKYKG--------EPKLDFARLAAIHQQ-TGLPLVLHGGSGI-SDADFRRAIELGIHKINF 232 (286)
T ss_pred HHHHHHCcCEEEeccCCCCCCCCC--------CCCCCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcCCcEEEe
Confidence 345678999999964442 2222 245678888888664 5799999999 7 578899999999999999
Q ss_pred cHHhhh
Q 023442 142 GRAAYQ 147 (282)
Q Consensus 142 GRgal~ 147 (282)
++++..
T Consensus 233 ~T~~~~ 238 (286)
T PRK06801 233 YTGMSQ 238 (286)
T ss_pred hhHHHH
Confidence 987643
No 215
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.74 E-value=0.12 Score=49.23 Aligned_cols=113 Identities=9% Similarity=0.052 Sum_probs=69.0
Q ss_pred cccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 96 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i 96 (282)
+++.+.+|+ +.+-++.+++.. +.||.+=+-..-....+.++ +.+.++..+++++.+|--...... .+...
T Consensus 98 ~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~----~~~~~~~~~adal~l~l~~~qe~~-~p~g~--- 168 (352)
T PRK05437 98 QRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEE----AQRAVEMIEADALQIHLNPLQELV-QPEGD--- 168 (352)
T ss_pred cHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHH----HHHHHHhcCCCcEEEeCccchhhc-CCCCc---
Confidence 445567888 777888888866 78887744321110111222 234556778999999963211000 01100
Q ss_pred CCccH----HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKY----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~----~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
-.| +.+.++++. .++||+. +|.-.|.++++.+.+.|+|+|.++
T Consensus 169 --~~f~~~le~i~~i~~~-~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 169 --RDFRGWLDNIAEIVSA-LPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred --ccHHHHHHHHHHHHHh-hCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 013 345566554 4789986 666688999998888999999874
No 216
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.74 E-value=0.19 Score=46.47 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc--CCCCHHHHHHHHHcCCCEEEecH
Q 023442 68 SSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~~g~DgVmIGR 143 (282)
.++.|+|.|.+.-.|. .+.+ .+.++++.+.++.+. .++|+++-| || +.+++.++++.|+++|-++.
T Consensus 162 ~~~tgvD~Lavs~Gt~hg~~~~--------~~~l~~e~L~~i~~~-~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 162 VKETGVDYLAAAIGTSHGKYKG--------EPGLDFERLKEIKEL-TNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHCcCEEeeccCccccccCC--------CCccCHHHHHHHHHH-hCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECc
Confidence 3458999999853331 2322 245678888888775 489999999 98 78899999999999999998
Q ss_pred Hhh
Q 023442 144 AAY 146 (282)
Q Consensus 144 gal 146 (282)
.+.
T Consensus 232 ~l~ 234 (282)
T TIGR01859 232 DCR 234 (282)
T ss_pred HHH
Confidence 775
No 217
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.73 E-value=0.082 Score=49.85 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442 23 LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
++++...++++++++.+ ++++.+...-+|+. ++..+ +.+.+++.|+.++.=- +++-.
T Consensus 170 ~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~----~~a~~-~~~~l~~~~i~~iEqP----------------~~~~~ 228 (357)
T cd03316 170 EDLREDLARVRAVREAVGPDVDLMVDANGRWDL----AEAIR-LARALEEYDLFWFEEP----------------VPPDD 228 (357)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCH----HHHHH-HHHHhCccCCCeEcCC----------------CCccC
Confidence 44777788888888876 56777777666653 23333 3345566666655310 11113
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
++...++.+. .++||++.+.+.+++|+.++++ ..||.|.+-
T Consensus 229 ~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 229 LEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred HHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence 5556666654 5899999999999999999998 678887653
No 218
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=95.71 E-value=0.16 Score=45.67 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.+.++++ ..++||+..|||.+.+++.++.+. +|+|.+|.++.
T Consensus 176 ~~~i~~lr~-~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 176 KELIKRIRK-YTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHHHHHh-cCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 355666655 468999999999999999999988 99999997664
No 219
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.087 Score=47.84 Aligned_cols=130 Identities=23% Similarity=0.300 Sum_probs=79.1
Q ss_pred ccCCHHHH---HHHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEEE-E
Q 023442 21 LMLDPKFV---GEAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHFI-I 78 (282)
Q Consensus 21 Ll~~p~~~---~eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i~-V 78 (282)
.+.+|.+. .+-++.+++.+++||-+|== .|-|-- -+-+++.+ +...+.+.|.+.|+ |
T Consensus 85 VLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~e-l~~~A~~LGm~~LVEV 163 (254)
T COG0134 85 VLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEE-LVDRAHELGMEVLVEV 163 (254)
T ss_pred EecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHH-HHHHHHHcCCeeEEEE
Confidence 44555433 25678888889999999831 233210 00111222 23345677877654 7
Q ss_pred ecCCc---cc-CCC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442 79 HSRKA---LL-NGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149 (282)
Q Consensus 79 H~Rt~---~~-~G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP 149 (282)
|.... .. -|. -+-+|+... .++.+...++....| +.-+|.-.||.|++|+.++...|+||+.||.++|.++
T Consensus 164 h~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 164 HNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRAD 243 (254)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCC
Confidence 75421 00 010 001222222 223444556665544 4778999999999999999999999999999999999
Q ss_pred cc
Q 023442 150 WY 151 (282)
Q Consensus 150 ~i 151 (282)
..
T Consensus 244 ~~ 245 (254)
T COG0134 244 DP 245 (254)
T ss_pred CH
Confidence 96
No 220
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=95.68 E-value=0.031 Score=48.27 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=34.2
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
++||++-|||+. +++.++++.|+|+|.+|++++..+..
T Consensus 166 ~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~ 203 (211)
T cd00429 166 NLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDY 203 (211)
T ss_pred CeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCH
Confidence 589999999975 99999999999999999999887764
No 221
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.66 E-value=0.1 Score=49.23 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHH-hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le-~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++.-.+.++.++.....-++| .+|..+ +.+ +.+..+++ .+|+|.|+|..- .|.+.. -.+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~----er~~~L~~~~~g~D~iviD~A----hGhs~~--------~i~~ 141 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADF----EKTKQILALSPALNFICIDVA----NGYSEH--------FVQF 141 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH-HHH----HHHHHHHhcCCCCCEEEEECC----CCcHHH--------HHHH
Confidence 555566666666443222333 334433 222 23344444 379999999642 232210 1456
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.+++.+|+++| ..|+|-|++.++.++..|||+|=+|=|
T Consensus 142 ik~ik~~~P~~~v-IaGNV~T~e~a~~Li~aGAD~vKVGIG 181 (346)
T PRK05096 142 VAKAREAWPDKTI-CAGNVVTGEMVEELILSGADIVKVGIG 181 (346)
T ss_pred HHHHHHhCCCCcE-EEecccCHHHHHHHHHcCCCEEEEccc
Confidence 7788887888875 569999999999999999999877654
No 222
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.056 Score=48.33 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=37.6
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh--hhCCcc
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA--YQNPWY 151 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga--l~nP~i 151 (282)
+.-++++. ++|||.--||-++.|+...++-|||+|++-.+. -.||-.
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~ 222 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVA 222 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHH
Confidence 33444444 999999999999999999999999999998776 344543
No 223
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.64 E-value=0.12 Score=48.75 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
++.-.+.++.+......-++| .+|..+ +.+ +.+..+++. .|+|.|+|..- .|.+.. -.+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~----er~~~L~~a~~~~d~iviD~A----hGhs~~--------~i~~ 140 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDL----EKMTSILEAVPQLKFICLDVA----NGYSEH--------FVEF 140 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCH-HHH----HHHHHHHhcCCCCCEEEEECC----CCcHHH--------HHHH
Confidence 555555555544433323333 334333 122 223334432 26999999642 232210 1455
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
++.+++.+|+. .+.-|+|-|+++++.+++.|||+|-+|
T Consensus 141 ik~ir~~~p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 141 VKLVREAFPEH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhhCCCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 66776666654 567799999999999999999999887
No 224
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.61 E-value=0.088 Score=49.73 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=75.2
Q ss_pred HHHHHHhhc-CCccEEEEe-----------c-CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCcc---cC
Q 023442 30 EAMSVIAAN-TNVPVSVKC-----------R-IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL---LN 86 (282)
Q Consensus 30 eiv~~v~~~-~~ipvsvKi-----------R-~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~---~~ 86 (282)
+-++.++++ +++||-.|= | .|-|-- -+-.++. .+.+++.+.|.+.| .||..... ..
T Consensus 170 e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~-~l~~~A~~LGme~LVEVH~~~ElerAl~ 248 (338)
T PLN02460 170 ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIK-YMLKICKSLGMAALIEVHDEREMDRVLG 248 (338)
T ss_pred HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHh
Confidence 446778887 899999883 1 233320 0111222 23456678888765 58854310 11
Q ss_pred --CC--CcCCcCCCC--CccHHHHHHHHh-----cC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 87 --GI--SPAENRTIP--PLKYEYYYALLR-----DF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 87 --G~--~~ad~~~i~--~~~~~~i~~l~~-----~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
|. -+-+|+... .++.+...++.. .. .++-+|+-+||.|++|+..+.+.|+|+|.||.++|..|..
T Consensus 249 ~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 249 IEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred cCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 21 012333222 233444555554 22 2466899999999999999999999999999999999985
No 225
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=95.60 E-value=0.11 Score=47.36 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=69.4
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEec--CCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 94 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR--~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~ 94 (282)
+|..+-.+.+.+.+-+++|++.++-++.+|+= .+.-..+ +++. .+.+++.++|+|+|--+.... ..|.++.
T Consensus 106 ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~i~-~a~~~a~~aGADFVKTSTGf~-~~gAt~e--- 178 (257)
T PRK05283 106 YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--ALIR-KASEIAIKAGADFIKTSTGKV-PVNATLE--- 178 (257)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HHHH-HHHHHHHHhCCCEEEcCCCCC-CCCCCHH---
Confidence 56666678999999999999876423555643 2322211 1232 345677899999986653211 0121111
Q ss_pred CCCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 95 TIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
....+.+.+++ ..++.|=++|||+|.+++.++++.| +-.|++-|+
T Consensus 179 -----dv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag-------~~~lg~~~~ 226 (257)
T PRK05283 179 -----AARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALA-------DEILGADWA 226 (257)
T ss_pred -----HHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHH-------HHHhChhhc
Confidence 12233344332 1357888999999999999999843 445555554
No 226
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.55 E-value=0.045 Score=47.40 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=33.9
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
++||...||| |++.+.+++++|+|+|.+|++++..+..
T Consensus 165 ~~~i~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~ 202 (210)
T TIGR01163 165 SILIEVDGGV-NDDNARELAEAGADILVAGSAIFGADDY 202 (210)
T ss_pred CceEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 4799999999 5799999999999999999999887764
No 227
>PRK08999 hypothetical protein; Provisional
Probab=95.50 E-value=0.061 Score=49.81 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
+.+.|+|++.+.+=... .+ ..+ .+++.++.+.++++. .++||++=||| |.+++.+++++|+|||.+-+++
T Consensus 242 a~~~~~dyi~~gpvf~t--~t-k~~---~~~~g~~~~~~~~~~-~~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 242 AQRLGVDFAVLSPVQPT--AS-HPG---AAPLGWEGFAALIAG-VPLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HHhcCCCEEEECCCcCC--CC-CCC---CCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 34678999888652110 00 011 134557777777664 58999999999 9999999999999999876654
No 228
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.30 E-value=0.11 Score=50.60 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=53.9
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--------CCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--------~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
+.+.|+|+|.+-+=..+ -. +. ...+|..|+.+.++++.. .++||++=||| +.+++.+++++|++||
T Consensus 316 A~~~gaDYI~lGPIFpT--~T--K~-~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GV 389 (437)
T PRK12290 316 IVQIQPSYIALGHIFPT--TT--KQ-MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSL 389 (437)
T ss_pred HhhcCCCEEEECCccCC--CC--CC-CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 34678898887531110 00 00 012455677775554432 37999999999 9999999999999999
Q ss_pred EecHHhhhCCcc
Q 023442 140 MVGRAAYQNPWY 151 (282)
Q Consensus 140 mIGRgal~nP~i 151 (282)
.+-|+++..+..
T Consensus 390 AVVSAI~~A~DP 401 (437)
T PRK12290 390 AVVRAITLAEDP 401 (437)
T ss_pred EEehHhhcCCCH
Confidence 999999876663
No 229
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.23 E-value=0.068 Score=53.00 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=46.6
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.++|++.|++-.-. |.+ .. -++.+..++++++++||++ |+|.|.+++..+++.|||+|-+|
T Consensus 234 ~~L~~agvdvivvD~a~----g~~-~~-------vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 234 EALVEAGVDVLVVDTAH----GHS-EG-------VLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHhCCCEEEEECCC----Ccc-hh-------HHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 34567999988874311 110 00 1455667776667899888 99999999999999999999775
No 230
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.18 E-value=0.76 Score=42.04 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhhc-CCccEEEEecC------------------CCCC----CCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 24 DPKFVGEAMSVIAAN-TNVPVSVKCRI------------------GVDD----HDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~-~~ipvsvKiR~------------------G~d~----~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
.++.+.++++.+++. .++|+.+=+-. |.|. +-..++ ...+.+.+++.|++.|.+-+
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeC
Confidence 467788999999954 68888764321 1111 001211 12233445566666666532
Q ss_pred CCc-------------------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 81 RKA-------------------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 81 Rt~-------------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
-|. ...|..++....... --+.+.++ +++.++||...=||.|+++++++.+. ||||.+
T Consensus 156 Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~v-r~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIV 232 (265)
T COG0159 156 PTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSAD-VKELVKRV-RKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIV 232 (265)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchh-HHHHHHHH-HHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEE
Confidence 220 112433333221111 12334444 44569999999999999999999998 999999
Q ss_pred cHHhh
Q 023442 142 GRAAY 146 (282)
Q Consensus 142 GRgal 146 (282)
|.++.
T Consensus 233 GSAiV 237 (265)
T COG0159 233 GSAIV 237 (265)
T ss_pred cHHHH
Confidence 98864
No 231
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.17 E-value=0.15 Score=46.16 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc-------
Q 023442 30 EAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA------- 83 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~------- 83 (282)
+-++.+++.+++||-.|== .|-|-- -+-+++.+ +...+.+.|.+.| .||....
T Consensus 92 ~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~-l~~~a~~lGle~LVEVh~~~El~~a~~~ 170 (247)
T PRK13957 92 EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKS-FLKHASSLGMDVLVEVHTEDEAKLALDC 170 (247)
T ss_pred HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHH-HHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence 4466677778899988721 122210 01112322 3345677888766 5775321
Q ss_pred --ccCCCCcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 84 --LLNGISPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 84 --~~~G~~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
..=|. +++... .++.+...++....| +..+|+-+||.|++|+.++... +|||.||.++|.++..
T Consensus 171 ga~iiGI---NnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~ 239 (247)
T PRK13957 171 GAEIIGI---NTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDI 239 (247)
T ss_pred CCCEEEE---eCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCH
Confidence 01111 222111 223445556655444 5678999999999999998876 9999999999999985
No 232
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.14 E-value=0.076 Score=52.60 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=49.4
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
+.+.++|++.|.+-.-. |.+. .-++.+.++++++|+++|+ .|+|.|.+.++.+++.|||+|-+|=|
T Consensus 233 ~~Lv~aGvd~i~~D~a~----~~~~--------~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 233 RALLEAGVDVLVVDTAH----GHQE--------KMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred HHHHHhCCCEEEEeccC----CccH--------HHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEECcc
Confidence 34567899999986532 1110 0167788888888888775 58999999999999999999886644
No 233
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.09 E-value=0.12 Score=48.44 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
-+.+..+++. +++||+.-+||.+++|+.++++.|||||.+..|...
T Consensus 238 p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 238 PYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 4566666664 689999999999999999999999999999988853
No 234
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.09 E-value=0.38 Score=45.34 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=67.6
Q ss_pred cccccCCHHHHHHHHHHHhh-cCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-c---ccCCCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-A---LLNGISPAE 92 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~-~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~---~~~G~~~ad 92 (282)
+++.+.+|+...+. +.+++ ..++|+.+-+-..-......++ +.+..+..+++++.+|--. + ...|. .+
T Consensus 91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~----~~~~i~~i~adal~i~ln~~q~~~~p~g~--~~ 163 (333)
T TIGR02151 91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEE----AQEAIDMIEADALAIHLNVLQELVQPEGD--RN 163 (333)
T ss_pred chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHH----HHHHHHHhcCCCEEEcCcccccccCCCCC--cC
Confidence 44456689877666 77877 5689998754321110011222 2334456678999999632 1 11111 11
Q ss_pred cCCCCCccH-HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442 93 NRTIPPLKY-EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 93 ~~~i~~~~~-~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
. -.| +.+..+++. .++||+. +|.-.+.++++.+.+.|+|+|-++
T Consensus 164 f-----~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs 210 (333)
T TIGR02151 164 F-----KGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA 210 (333)
T ss_pred H-----HHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0 012 456666664 4789975 566679999988888999999886
No 235
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.09 E-value=0.067 Score=53.35 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
.+.++|+|.|.+-.- .|.+.. -|+.+.++++.+++++| .-|+|.|.++++.+++.|||+|.+|
T Consensus 255 ~l~~ag~d~i~iD~~----~g~~~~--------~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 255 HLVKAGVDVVVLDSS----QGDSIY--------QLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHcCCCEEEEeCC----CCCcHH--------HHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 456799999999762 233211 27888888887777666 4589999999999999999999775
No 236
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.07 E-value=0.18 Score=47.35 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=65.5
Q ss_pred cCcccccccC-CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC--CCEEEEecCCcccCCCCc
Q 023442 14 HGCFGVSLML-DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISP 90 (282)
Q Consensus 14 ~g~yGs~Ll~-~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G--v~~i~VH~Rt~~~~G~~~ 90 (282)
.|.+ +.+.+ +++...+.++.++.. .++ +-+-+|..+. .. +.+..+ .++| +|.|.+..- .|.+.
T Consensus 57 ~G~~-~i~hK~~~E~~~sfvrk~k~~-~L~--v~~SvG~t~e-~~----~r~~~l-v~a~~~~d~i~~D~a----hg~s~ 122 (321)
T TIGR01306 57 NGYF-YIMHRFDEESRIPFIKDMQER-GLF--ASISVGVKAC-EY----EFVTQL-AEEALTPEYITIDIA----HGHSN 122 (321)
T ss_pred cCCE-EEEecCCHHHHHHHHHhcccc-ccE--EEEEcCCCHH-HH----HHHHHH-HhcCCCCCEEEEeCc----cCchH
Confidence 3443 34555 777666666665432 333 3444555442 12 223333 4567 698888542 22211
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 91 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 91 ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
. -++.++.+++.+ ..|++..|.|.|.++++.+++.|||+|.+|
T Consensus 123 ~--------~~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 123 S--------VINMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred H--------HHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 0 156677777655 567888999999999999999999999877
No 237
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.06 E-value=0.1 Score=54.48 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=44.7
Q ss_pred CccHHHHHHHHhcCC--CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 98 PLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~--~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
++.|+.+.++++... ++||++=||| +++++.+++++|++||.+-++++..++.
T Consensus 149 ~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a~d~ 203 (755)
T PRK09517 149 ALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAAANP 203 (755)
T ss_pred CCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCCCCH
Confidence 456888877766432 3999999999 9999999999999999999999977764
No 238
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.05 E-value=0.34 Score=44.38 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+++||.+.||| |++.+.++.++|+|+|.+|.-...-|++
T Consensus 226 ~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 226 PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPAL 264 (269)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCcc
Confidence 57899999999 8999999999999999998555555453
No 239
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=94.99 E-value=0.22 Score=45.29 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=51.6
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
..++..++|+|+|+|.. .|.. ...+.+.++++.. ++||+.++|+ |++-+.++++ -|||+.+|..+
T Consensus 166 ~a~~~~~aDaviVtG~~---TG~~---------~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~-~ADG~IVGS~~ 230 (254)
T PF03437_consen 166 DAVERGGADAVIVTGKA---TGEP---------PDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLS-YADGAIVGSYF 230 (254)
T ss_pred HHHHhcCCCEEEECCcc---cCCC---------CCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHH-hCCEEEEeeee
Confidence 34467899999999854 2331 1256666776654 4999999998 8999999987 48999999876
Q ss_pred hhCCc
Q 023442 146 YQNPW 150 (282)
Q Consensus 146 l~nP~ 150 (282)
-.|=.
T Consensus 231 K~~G~ 235 (254)
T PF03437_consen 231 KKDGK 235 (254)
T ss_pred eeCCE
Confidence 54443
No 240
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.28 Score=47.34 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=50.0
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.++|++.|++..- +|.|-.. .+.++-+++.+|++.||+ |++.|.++++.++..|+||+=||-|
T Consensus 258 ll~~aGvdvviLDSS----qGnS~~q--------iemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVGMG 322 (503)
T KOG2550|consen 258 LLVQAGVDVVILDSS----QGNSIYQ--------LEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVGMG 322 (503)
T ss_pred HhhhcCCcEEEEecC----CCcchhH--------HHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEeccc
Confidence 566899999999763 3443211 556666777789998865 8889999999999999999887755
No 241
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.18 Score=44.98 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=67.3
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 94 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~ 94 (282)
+|...-.+++.+.+-|++|++++.-++.+|+=+ +.-. -++. ....+++.++|+|+|--+.... ..|-+.
T Consensus 100 ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt---~ee~-~~A~~i~~~aGAdFVKTSTGf~-~~gAT~---- 170 (228)
T COG0274 100 IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLT---DEEK-RKACEIAIEAGADFVKTSTGFS-AGGATV---- 170 (228)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccC---HHHH-HHHHHHHHHhCCCEEEcCCCCC-CCCCCH----
Confidence 355556689999999999999986446667543 3222 1233 2345677899999986553211 112111
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 137 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D 137 (282)
. +...+.+.+. ..+.|=++|||+|.+|+..+++.|+.
T Consensus 171 --e--dv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~ 207 (228)
T COG0274 171 --E--DVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGAT 207 (228)
T ss_pred --H--HHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHH
Confidence 0 1222333332 35788899999999999999997733
No 242
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.87 E-value=0.18 Score=45.90 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHh-hcCCccEEEEec------CCCC------------C----CCcHHHHHHHHHHHHHhCCCCEEE-Ee
Q 023442 24 DPKFVGEAMSVIA-ANTNVPVSVKCR------IGVD------------D----HDSYNQLCDFIYKVSSLSPTRHFI-IH 79 (282)
Q Consensus 24 ~p~~~~eiv~~v~-~~~~ipvsvKiR------~G~d------------~----~~~~~e~~~~v~~~le~~Gv~~i~-VH 79 (282)
+.+.+.+++++++ +..++|+-+=.- -|.+ . +-..++.-+ +...+++.|.+.|. +.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~-~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEE-LRAAAKKHGLDLIFLVA 150 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeC
Confidence 4556778888888 446778643221 1211 0 112444333 34566788988887 33
Q ss_pred cCCc--------------c----cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 80 SRKA--------------L----LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 80 ~Rt~--------------~----~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
+.|. . ..|.++... ..++.-.+.+.++++ ..++||+..|||.|++++.++++ .||||.+
T Consensus 151 p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~-~~~~~~~~~i~~vk~-~~~~pv~vGfGI~~~e~v~~~~~-~ADGviV 227 (258)
T PRK13111 151 PTTTDERLKKIASHASGFVYYVSRAGVTGARS-ADAADLAELVARLKA-HTDLPVAVGFGISTPEQAAAIAA-VADGVIV 227 (258)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc-CCCccHHHHHHHHHh-cCCCcEEEEcccCCHHHHHHHHH-hCCEEEE
Confidence 3220 0 123222211 112222345656655 56899999999999999999998 4999999
Q ss_pred cHHhh
Q 023442 142 GRAAY 146 (282)
Q Consensus 142 GRgal 146 (282)
|.+++
T Consensus 228 GSaiv 232 (258)
T PRK13111 228 GSALV 232 (258)
T ss_pred cHHHH
Confidence 98876
No 243
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.76 E-value=0.11 Score=50.32 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=47.5
Q ss_pred HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
.+.++|+|.|++-.-. |.+. .-++.+.++.+.+|+++| .-|+|.|+++++.+++.|+|+|.+|=
T Consensus 160 ~lv~aGvDvI~iD~a~----g~~~--------~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 160 ELVKAHVDILVIDSAH----GHST--------RIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHhcCCCEEEEECCC----CCCh--------hHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEEECC
Confidence 4557999999986522 2110 014667777777778774 56899999999999999999999873
No 244
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.75 E-value=0.32 Score=42.58 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
+++.+.+.|+..+.|.-||.. ..+.+.++.++++++ ++|.|-|.|.++++++++.|+++++-
T Consensus 25 ~~~al~~gGi~~iEiT~~t~~---------------a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 25 IAEALIEGGIRAIEITLRTPN---------------ALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HHHHHHHTT--EEEEETTSTT---------------HHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHCCCCEEEEecCCcc---------------HHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 445677899999999998731 156777777777775 67999999999999999999998875
No 245
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=94.61 E-value=0.22 Score=48.08 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=50.7
Q ss_pred hCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 70 LSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 70 ~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
..++|.+.+|. .... +. +..|+.+.++.+...+++|...|||. .+++.++++.|+|.+.+||++...
T Consensus 297 ~~~vD~Vllht~vdp~--~~---------~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 297 KVKPDVVELHRGIDEE--GT---------EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred hCCCCEEEEccccCCC--cc---------cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 46788888884 3221 11 11266666665544578999999996 999999999999999999998766
Q ss_pred Cc
Q 023442 149 PW 150 (282)
Q Consensus 149 P~ 150 (282)
+.
T Consensus 365 ~D 366 (391)
T PRK13307 365 KD 366 (391)
T ss_pred CC
Confidence 55
No 246
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.61 E-value=0.64 Score=42.52 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
+.++|+|.|-+-.-. .+.+++.++.. ..+||++.||| |.+.+.++.++|+|+|.+|.-..
T Consensus 194 A~~~gaDyI~ld~~~------------------~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 194 AAEAGADIIMLDNMK------------------PEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHcCCCEEEECCCC------------------HHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHc
Confidence 357999998774311 23344444322 24899999999 79999999999999999964333
Q ss_pred hCCc
Q 023442 147 QNPW 150 (282)
Q Consensus 147 ~nP~ 150 (282)
.-|+
T Consensus 255 sa~~ 258 (265)
T TIGR00078 255 SVPA 258 (265)
T ss_pred CCCc
Confidence 2454
No 247
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.57 E-value=0.51 Score=41.98 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=32.7
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
++||.+-|||+ .+.+.++.+.|+|++.+|+++...+.
T Consensus 167 ~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 167 DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 58999999996 99999999999999999999876554
No 248
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.53 E-value=0.26 Score=43.37 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+.+.|+..+.|.-|+.. .++.+.+++++++++ ++|.|-|.|.++++++++.|+++++-=
T Consensus 25 ~~~al~~~Gi~~iEit~~t~~---------------a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a~~aGA~FivsP- 87 (204)
T TIGR01182 25 LAKALIEGGLRVLEVTLRTPV---------------ALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQAVDAGAQFIVSP- 87 (204)
T ss_pred HHHHHHHcCCCEEEEeCCCcc---------------HHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCCEEECC-
Confidence 456777999999999987631 156777887777764 579999999999999999999988532
Q ss_pred HhhhCCcc
Q 023442 144 AAYQNPWY 151 (282)
Q Consensus 144 gal~nP~i 151 (282)
++ ||.+
T Consensus 88 ~~--~~~v 93 (204)
T TIGR01182 88 GL--TPEL 93 (204)
T ss_pred CC--CHHH
Confidence 32 5555
No 249
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.52 E-value=0.21 Score=51.61 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc----ccC
Q 023442 30 EAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN 86 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~----~~~ 86 (282)
+-++.+++.+++||-.|== .|-|-- -+-.++. .+.+.+.+.|.+.| .||.+.. ...
T Consensus 101 ~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~-~l~~~a~~lGme~LvEvh~~~el~~a~~~ 179 (695)
T PRK13802 101 DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLK-HLLDLAHELGMTVLVETHTREEIERAIAA 179 (695)
T ss_pred HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 4466777788999988831 132210 0111222 23445678888776 5886531 000
Q ss_pred CC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 87 GI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 87 G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
|. -+-++|... .++.+...++....| ++.+|+-+||.|++|+.++.+.|+|+|.||.++|..|..
T Consensus 180 ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp 249 (695)
T PRK13802 180 GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDH 249 (695)
T ss_pred CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH
Confidence 10 001222222 223444556655444 567899999999999999999999999999999999985
No 250
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.047 Score=52.48 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHhCCCCEEEEecC------CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 68 SSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 68 le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
|-++|+|.|.|--. |+...+.+..+...+ |+ +.+.+.. ..+|||+-|||.++-++.+++..|++.||+
T Consensus 309 LI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAV----y~-va~~A~q-~gvpviADGGiq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 309 LIAAGADGLRVGMGSGSICITQKVMACGRPQGTAV----YK-VAEFANQ-FGVPCIADGGIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred HHHccCceeEeccccCceeeeceeeeccCCcccch----hh-HHHHHHh-cCCceeecCCcCccchhHhhhhcCchhhee
Confidence 45789999988422 222222111111111 11 3344444 389999999999999999999999999999
Q ss_pred cHHhhh
Q 023442 142 GRAAYQ 147 (282)
Q Consensus 142 GRgal~ 147 (282)
| ++|+
T Consensus 383 G-~lLA 387 (503)
T KOG2550|consen 383 G-GLLA 387 (503)
T ss_pred c-ceee
Confidence 9 5544
No 251
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.43 E-value=1.1 Score=40.99 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE-ecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V-H~Rt~~~~G~~~ad~~~ 95 (282)
.||..+.+.+++..+- ..++||.+|.-... +.+|+...+. .+.+.|..-|.+ |..+..|.+.. .
T Consensus 114 I~s~~~~n~~LL~~~a-----~~gkPVilk~G~~~----t~~e~~~Ave-~i~~~Gn~~i~l~~rG~s~y~~~~---~-- 178 (260)
T TIGR01361 114 IGARNMQNFELLKEVG-----KQGKPVLLKRGMGN----TIEEWLYAAE-YILSSGNGNVILCERGIRTFEKAT---R-- 178 (260)
T ss_pred ECcccccCHHHHHHHh-----cCCCcEEEeCCCCC----CHHHHHHHHH-HHHHcCCCcEEEEECCCCCCCCCC---c--
Confidence 4788899988654442 24899999964321 3445554443 456788865555 64354442211 1
Q ss_pred CCCccHHHHHHHHhcCCCceEEEc-cCCCC-----HHHHHHHHHcCCCEEEecHHh
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~n-GdI~s-----~eda~~~l~~g~DgVmIGRga 145 (282)
..+++..+..+++.+ ++||+.+ +=... +..+..+...|+||+||=+-.
T Consensus 179 -~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 179 -NTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred -CCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 124577777776644 7999993 22222 444555556899999887544
No 252
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.42 E-value=0.7 Score=39.45 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcC-Cc-cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442 28 VGEAMSVIAANT-NV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 105 (282)
Q Consensus 28 ~~eiv~~v~~~~-~i-pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~ 105 (282)
+.+.++++++.. .. ++.|-++ +.+++.+ . .++|+|.|-+-.-+ +.+ + -+.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~e----a-~~~g~d~I~lD~~~-------~~~------~-~~~v~ 119 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEE----A-LEAGADIIMLDNMS-------PED------L-KEAVE 119 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHH----H-HHTT-SEEEEES-C-------HHH------H-HHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHH----H-HHhCCCEEEecCcC-------HHH------H-HHHHH
Confidence 456666666654 22 3666553 2344322 2 36899999876532 111 0 11222
Q ss_pred HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+....+++.|.++||| |.+.+.++.++|+|.+.+|.-...-|++
T Consensus 120 ~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 120 ELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp HHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE--
T ss_pred HHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCccc
Confidence 33233567999999998 8999999999999999999776666654
No 253
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=94.42 E-value=0.47 Score=41.60 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
++.+..+.. ...-||+..|||.-.||.+.+...||+||.+|+++...
T Consensus 170 ~E~l~~~~~-~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 170 YELLTKVLE-LSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHHHHHH-hccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 666655544 35679999999999999999998999999999987543
No 254
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.42 E-value=0.79 Score=43.09 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=67.4
Q ss_pred cccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCC--CCcHHHHHHHHHHHHHhCCCCEEEEecCCccc--CCCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL--NGISPAE 92 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~--~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~--~G~~~ad 92 (282)
+++.+.+|+.. +-++.+++.. +.|+.+-+- ... ..+.+++ .+..+..+++++.+|--.... +...+.+
T Consensus 90 ~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~--~~~~~~~~~~~~----~~~i~~~~adalel~l~~~q~~~~~~~~~d 162 (326)
T cd02811 90 QRAALEDPELA-ESFTVVREAPPNGPLIANLG--AVQLNGYGVEEA----RRAVEMIEADALAIHLNPLQEAVQPEGDRD 162 (326)
T ss_pred chhhccChhhh-hHHHHHHHhCCCceEEeecC--ccccCCCCHHHH----HHHHHhcCCCcEEEeCcchHhhcCCCCCcC
Confidence 44456678866 6678887766 488777443 222 1133332 334556789999999632110 1001111
Q ss_pred cCCCCCccH-HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442 93 NRTIPPLKY-EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 93 ~~~i~~~~~-~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
++ .| +.+..+++. .++||+. +|.-.|.++++.+.+.|+|+|-++
T Consensus 163 f~-----~~~~~i~~l~~~-~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 163 FR-----GWLERIEELVKA-LSVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HH-----HHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 10 01 445666654 4889986 666689999998888999999875
No 255
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.40 E-value=0.73 Score=42.48 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=46.3
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.|+|.|.+-. .| .+.+.++++.. ..+||.+.||| |.+.+.++.++|+|+|.+|.--..
T Consensus 205 ~~~gaDyI~lD~-----~~-------------~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~s 265 (277)
T PRK08072 205 VAAGADIIMFDN-----RT-------------PDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHS 265 (277)
T ss_pred HHcCCCEEEECC-----CC-------------HHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcC
Confidence 479999997721 11 34455555432 35788999999 999999999999999999964443
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
-|++
T Consensus 266 a~~~ 269 (277)
T PRK08072 266 VKAL 269 (277)
T ss_pred Cccc
Confidence 4553
No 256
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.32 E-value=0.073 Score=47.57 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=40.7
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
.-+.+++++. ..|+|..|||+|+|+|.++.+.|||.|..|--+..+|.-+
T Consensus 181 ~~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~ 230 (240)
T COG1646 181 PVEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKA 230 (240)
T ss_pred CHHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHH
Confidence 3455544433 3499999999999999999999999999999999988653
No 257
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.28 E-value=0.24 Score=45.64 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=45.7
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|+|.|.+-. . ..+.+.++++.. +++|+++.||| |.+.+.++.++|+|+|.+|.--..
T Consensus 206 ~~~gaD~I~LD~-----~-------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 206 LAAGADIVMLDE-----L-------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHcCCCEEEECC-----C-------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcC
Confidence 478999996621 0 134444444422 47999999999 799999999999999999965444
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
-|++
T Consensus 267 ~~~~ 270 (277)
T PRK05742 267 VKAV 270 (277)
T ss_pred Cccc
Confidence 4443
No 258
>PRK06852 aldolase; Validated
Probab=94.23 E-value=1.1 Score=41.77 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHH----HHH
Q 023442 59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNA----ALR 133 (282)
Q Consensus 59 e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~----~l~ 133 (282)
+++..++++..+.|+|.|-+---+....| .-+.+.++++....+||+..||=. +.+++.+ .++
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~~~~g------------~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~ 255 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKKEGAN------------PAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIH 255 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCcCCCC------------CHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34455678888888888866532210001 135566776643368987777755 4444544 444
Q ss_pred -cCCCEEEecHHhhhCCc
Q 023442 134 -KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 134 -~g~DgVmIGRgal~nP~ 150 (282)
.|+.||++||-+...|.
T Consensus 256 ~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 256 ISGASGNATGRNIHQKPL 273 (304)
T ss_pred HcCCceeeechhhhcCCC
Confidence 69999999998877754
No 259
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.21 E-value=0.38 Score=42.36 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=51.4
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.++|++.+-+.+-.. ..| -.+++.+..=++++|++..||| |.+.+.+.++.|+.+|.+|..+...
T Consensus 118 ~~~Ga~~vKlFPA~~-~GG-------------~~yikal~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 118 LELGITALKLFPAEV-SGG-------------VKMLKALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred HHCCCCEEEECCchh-cCC-------------HHHHHHHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCc
Confidence 478899888876321 112 2456666655789999999999 6799999999999999999888755
Q ss_pred Ccc
Q 023442 149 PWY 151 (282)
Q Consensus 149 P~i 151 (282)
..+
T Consensus 183 ~~~ 185 (204)
T TIGR01182 183 DLI 185 (204)
T ss_pred hhh
Confidence 543
No 260
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.18 E-value=0.99 Score=41.35 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCceEEEccCCC-CHHHHHHHHH----cCCCEEEecHHhhhCCc
Q 023442 102 EYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~----~g~DgVmIGRgal~nP~ 150 (282)
+.+.++++. ..+||+..||=. +.+++.++.. .|+.||.+||-....|.
T Consensus 182 ~~f~~vv~a-~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 182 EGFERITAG-CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence 456777774 468998877755 4455555543 79999999998876654
No 261
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=94.18 E-value=0.28 Score=48.79 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC---EEEecHH
Q 023442 68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRA 144 (282)
Q Consensus 68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D---gVmIGRg 144 (282)
+.+.|+|+|.+.+=.. ... ... -++..++.+..+.+. .++||++-||| +++++.+++++|++ ||.++++
T Consensus 406 a~~~gadyi~~gpif~--t~t--k~~--~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~ 477 (502)
T PLN02898 406 AWKDGADYIGCGGVFP--TNT--KAN--NKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSA 477 (502)
T ss_pred HhhcCCCEEEECCeec--CCC--CCC--CCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeH
Confidence 3467888887542100 000 010 135567888777654 58999999999 69999999998887 9999999
Q ss_pred hhhCCc
Q 023442 145 AYQNPW 150 (282)
Q Consensus 145 al~nP~ 150 (282)
++..+.
T Consensus 478 i~~~~d 483 (502)
T PLN02898 478 LFDQED 483 (502)
T ss_pred HhcCCC
Confidence 986554
No 262
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.15 E-value=0.35 Score=42.47 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=50.3
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
+++.+.+.|+..|.|.-|+.. ..+.+.++.++++++ +||.|-|.|.++++++++.|+++++-
T Consensus 21 ia~al~~gGi~~iEit~~tp~---------------a~~~I~~l~~~~~~~-~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 21 LARALAAGGLPAIEITLRTPA---------------ALDAIRAVAAEVEEA-IVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred HHHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHCCCC-EEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 456677999999999987631 156777887777653 68999999999999999999998874
No 263
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.06 E-value=0.98 Score=42.90 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=34.9
Q ss_pred ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
..|+.+..+++. .++|||.- +|.+.+|++.+.+.|||+|.+.
T Consensus 200 ~~~~~i~~l~~~-~~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKH-TKLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHh-cCCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 468888888764 58898876 6789999999999999999875
No 264
>PLN02535 glycolate oxidase
Probab=94.06 E-value=0.89 Score=43.53 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=35.9
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.|+.+..+.+. .++|||. .+|.+++|++.+.+.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 45679998888764 6899854 66799999999999999999774
No 265
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.99 E-value=0.43 Score=47.00 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHhhcCCccEEEEe-----------c-CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCcc----cC
Q 023442 30 EAMSVIAANTNVPVSVKC-----------R-IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LN 86 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKi-----------R-~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~----~~ 86 (282)
+-++.+++.+++||-.|= | .|-|-- -+-+++.+ +...+.+.|.+.| .||..... ..
T Consensus 100 ~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~-l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 100 DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQ-LAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHH-HHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 445677888889998882 1 233321 01112222 3345677888765 58854310 00
Q ss_pred CC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 87 GI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 87 G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
|. -+-+++... .++.+...++....+ ++.+|+-+||.|++|+.++.. |+|||.||.++|.+|..
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCH
Confidence 10 001222221 223444556655444 577899999999999999765 79999999999999985
No 266
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.96 E-value=0.46 Score=42.84 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
-..+.+.+.++.|...+++||++.+..|+.+. ..+.+.+ +.+.++|++.|.+-.
T Consensus 52 ~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v-~~~~~~G~~gv~iED 105 (243)
T cd00377 52 LTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTV-RELEEAGAAGIHIED 105 (243)
T ss_pred CCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHH-HHHHHcCCEEEEEec
Confidence 34577778888888888999999999998653 3344443 445679999999953
No 267
>PLN02979 glycolate oxidase
Probab=93.94 E-value=0.9 Score=43.46 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=35.6
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+++.|+.+..+.+ ..++|||.-| |.+.+|++++.+.|+|+|.++
T Consensus 208 ~~ltW~dl~wlr~-~~~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 208 RTLSWKDVQWLQT-ITKLPILVKG-VLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCCHHHHHHHHh-ccCCCEEeec-CCCHHHHHHHHhcCCCEEEEC
Confidence 4567998877766 4689987654 679999999999999999874
No 268
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.94 E-value=0.24 Score=45.39 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=45.0
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|+|.|-+-.- ..+.+.+.++... ++|+.+.||| |.+.+.++.++|+|+|.+|.--..
T Consensus 199 ~~~gaDyI~ld~~------------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~ 259 (268)
T cd01572 199 LEAGADIIMLDNM------------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHS 259 (268)
T ss_pred HHcCCCEEEECCc------------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecC
Confidence 4678888876431 1344555544322 5899999999 799999999999999999964433
Q ss_pred CCc
Q 023442 148 NPW 150 (282)
Q Consensus 148 nP~ 150 (282)
-|+
T Consensus 260 a~~ 262 (268)
T cd01572 260 APA 262 (268)
T ss_pred CCc
Confidence 343
No 269
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.90 E-value=1.1 Score=39.73 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc--eEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRKGAHHVM 140 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~i--pVi~nGdI~s~eda~~~l~~g~DgVm 140 (282)
+++.+.+.|+..+.|.-|+.. ..+.+.++.+++++- -++|.|-|.|.++++++++.|++++|
T Consensus 30 ~~~al~~~Gi~~iEit~~~~~---------------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 30 ISLAVIKGGIKAIEVTYTNPF---------------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred HHHHHHHCCCCEEEEECCCcc---------------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 456778999999999988631 156777887766422 36899999999999999999999998
No 270
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=93.88 E-value=0.58 Score=41.75 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.+.+.++.+..+...|..-||| +.+.+..+.+.|+|.+.+||++..++.
T Consensus 161 ~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 161 MPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred HHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 4445555554445778899999 778999899999999999999876665
No 271
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.84 E-value=0.16 Score=50.61 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
++.|.++|+|.|.|. .+ .|.+ ++ ..+.++++++.++.--.|+.|.|.|+++++.+++.|||+|.+|.|
T Consensus 247 a~~Lv~aGvd~i~vd-~a---~g~~--~~------~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 247 VPALVEAGADVLCID-SS---EGYS--EW------QKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHHHhCCCeEeec-Cc---cccc--HH------HHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence 344667999999986 22 1221 10 145566776666532346889999999999999999999998543
No 272
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.84 E-value=1.3 Score=41.69 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC----cccCCCCcCCcCCCCCccH
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt----~~~~G~~~ad~~~i~~~~~ 101 (282)
+...+-++..++..+.||.+-+- |. +.+++.+ +++.++++|+|+|.+|--- ....|. ..+..-.
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~----~~~~~~~-~a~~~~~~gad~iElN~s~~~~~~~~~g~------~~~~~~~ 152 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GV----SAGGWVD-YARQIEEAGADALELNIYALPTDPDISGA------EVEQRYL 152 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CC----CHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCCCcccc------hHHHHHH
Confidence 44444444555555789888762 32 2234444 4556788999999998531 111111 0111112
Q ss_pred HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 102 EYYYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+.+.++.+ ..++||+. ++++.+..++.+.++ .|+|+|.+
T Consensus 153 eiv~~v~~-~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 153 DILRAVKS-AVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHh-ccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 34445544 35789874 667777777777666 99999965
No 273
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.81 E-value=0.83 Score=43.55 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=39.1
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe----cHHhhhCC
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV----GRAAYQNP 149 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI----GRgal~nP 149 (282)
.+.|+.+..+.+. .++||+.-| |.+++|++.+.+.|||+|.+ ||-+..-|
T Consensus 207 ~~~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 207 KLSPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CCCHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence 4568888777664 589999886 89999999999999999988 55444444
No 274
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.68 E-value=0.98 Score=39.93 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 140 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm 140 (282)
+++.+-+.|++.|.|.-|+.. ..+.|+.+++++++ -+||.|-|.|++++.++.+.|++.+.
T Consensus 30 ~a~Ali~gGi~~IEITl~sp~---------------a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 30 LAKALIEGGIPAIEITLRTPA---------------ALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHcCCCeEEEecCCCC---------------HHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCCCEEE
Confidence 456777999999999998731 16778888888774 48899999999999999999999765
No 275
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.63 E-value=1.1 Score=40.72 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHhhcCCcc-EEEEecCCCCCCC-cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442 22 MLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 99 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~~ip-vsvKiR~G~d~~~-~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~ 99 (282)
.-..+.+...+++|...++.| |++.+ ++.... +.++.++.+.++++++|++++.+-+...
T Consensus 54 ~vtl~em~~~~~~V~r~~~~p~viaD~--~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~---------------- 115 (254)
T cd06557 54 PVTLDEMIYHTRAVRRGAPRALVVADM--PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAE---------------- 115 (254)
T ss_pred CcCHHHHHHHHHHHHhcCCCCeEEEeC--CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHH----------------
Confidence 335567778888888888889 77776 333322 3556666777888889999999876310
Q ss_pred cHHHHHHHHhcCCCceEE-----------EccCCC----CHH-------HHHHHHHcCCCEEEe
Q 023442 100 KYEYYYALLRDFPDLTFT-----------LNGGIN----TVD-------EVNAALRKGAHHVMV 141 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi-----------~nGdI~----s~e-------da~~~l~~g~DgVmI 141 (282)
.-+.++.+.+ ..|||+ ..||.. |.+ +++.+.+.|||+|.+
T Consensus 116 ~~~~I~al~~--agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 116 VAETIRALVD--AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHH--cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 0233445544 367877 456542 343 333333479999877
No 276
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.63 E-value=1.1 Score=41.27 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+++.+.++||| |.+.+.++.++|+|.+.+|.--..-|++
T Consensus 230 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~ 268 (278)
T PRK08385 230 ERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVRNF 268 (278)
T ss_pred CCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 47889999999 9999999999999999999655435553
No 277
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.54 E-value=1.3 Score=41.09 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
.+.+++.|++.|.+|.-... .|.. ..|+.+.++++. .++||+.- ++.|+++++.+.+.|+|+|.+
T Consensus 135 i~~~~~~g~~~i~l~~~~p~-~~~~---------~~~~~i~~l~~~-~~~pvivK-~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 135 LRRAEAAGYKALVLTVDTPV-LGRR---------LTWDDLAWLRSQ-WKGPLILK-GILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHHcCCCEEEEecCCCC-CCCC---------CCHHHHHHHHHh-cCCCEEEe-ecCCHHHHHHHHHCCCCEEEE
Confidence 34557889999999964321 1211 237778777764 46898875 478999999999999999977
No 278
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.35 E-value=1.2 Score=40.70 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHhh--cCCccEEEEecC-CCCC-C--CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442 23 LDPKFVGEAMSVIAA--NTNVPVSVKCRI-GVDD-H--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 96 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~--~~~ipvsvKiR~-G~d~-~--~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i 96 (282)
.+.+.+.++.+.+.. ..++|+.+=+-. |... . +...+.....+++..+.|+|.|-+- |.|.
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-----ytg~-------- 190 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-----YTGD-------- 190 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-----CCCC--------
Confidence 345555555554433 246777653321 2111 0 1112334445677778888877332 2221
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCC--HHHHHHHH----HcCCCEEEecHHhhhCCc
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINT--VDEVNAAL----RKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s--~eda~~~l----~~g~DgVmIGRgal~nP~ 150 (282)
-+.|+++++-.+ +||+..||=.+ .+++.++. +.|+-|+.+||-+...|.
T Consensus 191 ----~e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 191 ----PESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred ----hHHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 355667777555 99998888654 55555544 379999999998766654
No 279
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.33 E-value=0.46 Score=43.25 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++..+++|+++|.|..-..++.|. ++.+..+.+. +++||+.--=|.++-++..+.+.|||+|.+.=
T Consensus 75 ~A~~~~~~GA~aisvlte~~~f~g~------------~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 75 IAKAYEAGGAACLSVLTDERFFQGS------------LEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred HHHHHHhCCCeEEEEecccccCCCC------------HHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEe
Confidence 4566789999999998766555553 6667676654 68999987667888888888889999998776
Q ss_pred HhhhCCcc
Q 023442 144 AAYQNPWY 151 (282)
Q Consensus 144 gal~nP~i 151 (282)
.++....+
T Consensus 142 ~~l~~~~l 149 (260)
T PRK00278 142 AALDDEQL 149 (260)
T ss_pred ccCCHHHH
Confidence 66544343
No 280
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.28 E-value=1.4 Score=40.81 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-----cccCCCCcCCcCCCCCc
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-----ALLNGISPAENRTIPPL 99 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-----~~~~G~~~ad~~~i~~~ 99 (282)
.+.+.+.++.|..++++||++.+-.| .+ ...+.+.+ +.+.++|+..|.+--.+ ....+... ...++.-
T Consensus 63 ~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~~~v~r~V-~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~--~~l~s~e 135 (285)
T TIGR02320 63 WTQRLDVVEFMFDVTTKPIILDGDTG-GN---FEHFRRLV-RKLERRGVSAVCIEDKLGLKKNSLFGNDVA--QPQASVE 135 (285)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecCCC-CC---HHHHHHHH-HHHHHcCCeEEEEeccCCCccccccCCCCc--ccccCHH
Confidence 34455667888888899999999888 33 23444444 45678999999993221 11111100 0111110
Q ss_pred -cHHHHHHHHh--cCCCceEEEccCCC----CHHHHHHHH----HcCCCEEEec
Q 023442 100 -KYEYYYALLR--DFPDLTFTLNGGIN----TVDEVNAAL----RKGAHHVMVG 142 (282)
Q Consensus 100 -~~~~i~~l~~--~~~~ipVi~nGdI~----s~eda~~~l----~~g~DgVmIG 142 (282)
..+.++..++ ..++++|++-=|.. ..+++.+-. +.|||+|++=
T Consensus 136 e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 136 EFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1112222222 12467887763322 345544333 3799999994
No 281
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=93.18 E-value=1.8 Score=40.12 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEe-cCCCCCC---------CcHHHHHHHHHHHHHhCCCCEEEEecCCc--ccCCCCcC
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKC-RIGVDDH---------DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPA 91 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKi-R~G~d~~---------~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~a 91 (282)
+.+...++++-.+. .+++|-.=+ ++|-.+. .+.++..+ .+++.|+|.|.|.-.|. .|+|.
T Consensus 116 Ni~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~----Fv~~TgvD~LAvaiGt~HG~Y~~~--- 187 (285)
T PRK07709 116 NVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSVHGPYKGE--- 187 (285)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHH----HHHHhCCCEEEEeecccccCcCCC---
Confidence 44555555555443 366664443 2322111 23444444 34688999999875552 34332
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEecHHh
Q 023442 92 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 92 d~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRga 145 (282)
|.++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|+..+
T Consensus 188 -----p~L~~~~L~~I~~~-~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 236 (285)
T PRK07709 188 -----PNLGFAEMEQVRDF-TGVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN 236 (285)
T ss_pred -----CccCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence 45679988888765 58999998886655 77888888888877777554
No 282
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.02 E-value=1.6 Score=41.81 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=35.3
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.|+.+..+.+ ..++|||.= +|.+++|++++.+.|||+|.++
T Consensus 209 ~~~tW~di~wlr~-~~~~PiivK-gV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 209 RTLSWKDVQWLQT-ITKLPILVK-GVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCCHHHHHHHHh-ccCCCEEee-cCCCHHHHHHHHHcCCCEEEEC
Confidence 3457888877765 468998664 5679999999999999999874
No 283
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.00 E-value=2.1 Score=39.26 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=55.0
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 023442 32 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 111 (282)
Q Consensus 32 v~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~ 111 (282)
+...++..+.|+.+=++- . +.++.++ +++.++++|+|.|.+|-......+. ...+-.-+..-.+.+.++.+ .
T Consensus 81 ~~~~~~~~~~p~ivsi~g-~----~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~-~ 152 (296)
T cd04740 81 LLPWLREFGTPVIASIAG-S----TVEEFVE-VAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKK-A 152 (296)
T ss_pred HHHHhhcCCCcEEEEEec-C----CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHh-c
Confidence 333444457888887752 2 2334444 4567788999999998533211111 01111111111233444444 3
Q ss_pred CCceEE--EccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 112 PDLTFT--LNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 112 ~~ipVi--~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
.++||+ .+.++.+..++.+.++ .|+|+|.+
T Consensus 153 ~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 153 TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 478886 4566655555555444 89999865
No 284
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.00 E-value=1.9 Score=38.41 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH----hcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~----~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
+++.+.+.|+..|.|.-||.. ..+.+.++. ++++++ ++|.|-|.|.++++++++.|++++
T Consensus 32 ~~~al~~gGi~~iEiT~~tp~---------------a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 32 VIKACYDGGARVFEFTNRGDF---------------AHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred HHHHHHHCCCCEEEEeCCCCc---------------HHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCCEE
Confidence 456677999999999998731 134454553 334444 689999999999999999999988
Q ss_pred EecHHhhhCCcc
Q 023442 140 MVGRAAYQNPWY 151 (282)
Q Consensus 140 mIGRgal~nP~i 151 (282)
|-= + .||.+
T Consensus 96 VsP-~--~~~~v 104 (222)
T PRK07114 96 VTP-L--FNPDI 104 (222)
T ss_pred ECC-C--CCHHH
Confidence 742 2 35555
No 285
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.82 E-value=2.8 Score=38.07 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=63.1
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~ 95 (282)
.||..+++.+++..+-+ .++||.+|.-. . .+.+|+...+ ..+.+.|...|. +|-.+..|. .+. +.
T Consensus 104 Igs~~~~n~~LL~~va~-----tgkPVilk~G~-~---~t~~e~~~A~-e~i~~~Gn~~i~L~eRg~~~Y~--~~~--~n 169 (250)
T PRK13397 104 VGARNMQNFEFLKTLSH-----IDKPILFKRGL-M---ATIEEYLGAL-SYLQDTGKSNIILCERGVRGYD--VET--RN 169 (250)
T ss_pred ECcccccCHHHHHHHHc-----cCCeEEEeCCC-C---CCHHHHHHHH-HHHHHcCCCeEEEEccccCCCC--Ccc--cc
Confidence 47888999777555433 38999999532 2 2345555443 445678886554 562232221 111 10
Q ss_pred CCCccHHHHHHHHhcCCCceEEEc----cCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~n----GdI~s--~eda~~~l~~g~DgVmIGRga 145 (282)
.++...+..+++. .++|||.. +|.+. +.-+..++..|+||+||=+-.
T Consensus 170 --~~dl~ai~~lk~~-~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 170 --MLDIMAVPIIQQK-TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred --ccCHHHHHHHHHH-hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 2234455555544 47998874 44332 233444555899999987543
No 286
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.72 E-value=0.33 Score=42.46 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=47.9
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.++|++.+-+.+-.. ..| -.+++.+..-+++++++..||| |.+++.+.++.|+.+|.+|..+..+
T Consensus 118 ~~~G~~~vK~FPA~~-~GG-------------~~~ik~l~~p~p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 118 LEAGADIVKLFPAGA-LGG-------------PSYIKALRGPFPDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp HHTT-SEEEETTTTT-TTH-------------HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHCCCCEEEEecchh-cCc-------------HHHHHHHhccCCCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCH
Confidence 478999888876321 111 3566677665789999999999 5689999999999999999766555
Q ss_pred Ccc
Q 023442 149 PWY 151 (282)
Q Consensus 149 P~i 151 (282)
.++
T Consensus 183 ~~i 185 (196)
T PF01081_consen 183 DLI 185 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 287
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.66 E-value=0.91 Score=40.50 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=51.9
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|++.+-+.+-. ..| -.+++.+..=+++++++..|||.. .+++.+.++.|+.+|.+|..+..
T Consensus 129 ~~~Ga~~vKlFPA~--~~G-------------~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 129 EELGCEIVKLFPGS--VYG-------------PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred HHCCCCEEEECccc--ccC-------------HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 47899999887622 112 245556655568999999999974 58999999999999999988876
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
+.++
T Consensus 194 ~~~~ 197 (222)
T PRK07114 194 KEAL 197 (222)
T ss_pred cccc
Confidence 6654
No 288
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=92.58 E-value=2.1 Score=40.53 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~ 95 (282)
.||..+++.+++.++-+ +++||.+|.-... +++|+...+ ..+...|...++ +|..+..|.+..
T Consensus 182 IgAr~~~N~~LL~~va~-----~~kPViLk~G~~~----ti~E~l~A~-e~i~~~GN~~viL~erG~~tf~~~~------ 245 (335)
T PRK08673 182 IGARNMQNFDLLKEVGK-----TNKPVLLKRGMSA----TIEEWLMAA-EYILAEGNPNVILCERGIRTFETAT------ 245 (335)
T ss_pred ECcccccCHHHHHHHHc-----CCCcEEEeCCCCC----CHHHHHHHH-HHHHHcCCCeEEEEECCCCCCCCcC------
Confidence 48889999988666543 4899999964321 344555433 345677886554 564343332211
Q ss_pred CCCccHHHHHHHHhcCCCceEEEcc----CCC--CHHHHHHHHHcCCCEEEecHHh
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNG----GIN--TVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nG----dI~--s~eda~~~l~~g~DgVmIGRga 145 (282)
...+++..+..+++. .++|||+.= |.. -+..+..+...||||+||=.-.
T Consensus 246 ~~~ldl~ai~~lk~~-~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 246 RNTLDLSAVPVIKKL-THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred hhhhhHHHHHHHHHh-cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 012345556555543 479997742 221 1244555556899999998543
No 289
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.57 E-value=2.3 Score=40.73 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=68.7
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC-EEEEecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~-~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
.||..+.+.+++..+- + .+.||.+|.-.+ .+.+|+...+. .+.+.|.. .+.+|-.+..|. ++ .
T Consensus 207 I~s~~~~n~~LL~~~a----~-~gkPVilk~G~~----~t~~e~~~Ave-~i~~~Gn~~i~L~erg~s~yp--~~----~ 270 (360)
T PRK12595 207 IGARNMQNFELLKAAG----R-VNKPVLLKRGLS----ATIEEFIYAAE-YIMSQGNGQIILCERGIRTYE--KA----T 270 (360)
T ss_pred ECcccccCHHHHHHHH----c-cCCcEEEeCCCC----CCHHHHHHHHH-HHHHCCCCCEEEECCccCCCC--CC----C
Confidence 4788899976654443 2 489999996432 13455554443 44578885 444562333322 11 0
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCC----H--HHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINT----V--DEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s----~--eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
...+++..+..+.+.+ ++||+.+-|=.. . .-+..+...||||+||=+-. ||..
T Consensus 271 ~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 271 RNTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred CCCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 1123577776776644 799999544222 1 13333445899999999888 8775
No 290
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=92.54 E-value=2 Score=41.16 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.|+.+..+++. .++||+.= +|.+.+|++.+.+.|+|+|.|+
T Consensus 213 ~~~~w~~i~~l~~~-~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 213 QKLSPRDIEEIAGY-SGLPVYVK-GPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred CCCCHHHHHHHHHh-cCCCEEEe-CCCCHHHHHHHHHcCcCEEEEC
Confidence 34679988888664 68999877 4889999999999999998664
No 291
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.47 E-value=1.9 Score=39.79 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442 27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 105 (282)
Q Consensus 27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~ 105 (282)
-+.+.++.+++.. ..+|.|=++ +.++.. .. .++|+|.|.+|.-+. .+ --+.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~----ea-~~~GaDiI~lDn~~~-------e~-------l~~~v~ 227 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQAL----TV-LQASPDILQLDKFTP-------QQ-------LHHLHE 227 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHH----HH-HHcCcCEEEECCCCH-------HH-------HHHHHH
Confidence 3557777777653 344555443 344432 22 379999999995321 11 012222
Q ss_pred HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
.+....+++.|.++||| |++.+.++.++|+|.+++|-
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCc
Confidence 22222367889999999 89999999999999999984
No 292
>PRK08185 hypothetical protein; Provisional
Probab=92.28 E-value=2.8 Score=38.75 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG 142 (282)
+..++.|+|.|.+.-.|. .|.+. .-|.++++.+.++.+. .++|+++-|++. +.++++++++.|+-=|=|+
T Consensus 156 ~f~~~TgvD~LAvaiGt~HG~y~~~------~kp~L~~e~l~~I~~~-~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~ 228 (283)
T PRK08185 156 DFVSRTGVDTLAVAIGTAHGIYPKD------KKPELQMDLLKEINER-VDIPLVLHGGSANPDAEIAESVQLGVGKINIS 228 (283)
T ss_pred HHHHhhCCCEEEeccCcccCCcCCC------CCCCcCHHHHHHHHHh-hCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence 344567999999932221 22221 1144568888888765 589999999985 5567777888888888777
Q ss_pred HHh
Q 023442 143 RAA 145 (282)
Q Consensus 143 Rga 145 (282)
..+
T Consensus 229 T~l 231 (283)
T PRK08185 229 SDM 231 (283)
T ss_pred hHH
Confidence 665
No 293
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.28 E-value=2.7 Score=38.54 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=64.4
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~ 95 (282)
.||..+.+.+++.++ ...++||.+|.-... +++++... +..+...|...++ +|...+...+..
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~----s~~e~~~A-~e~i~~~Gn~~i~L~~rG~~t~~~Y~------ 179 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSA----TLEEWLYA-AEYIMSEGNENVVLCERGIRTFETYT------ 179 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCC----CHHHHHHH-HHHHHhcCCCeEEEEECCCCCCCCCC------
Confidence 578889997775555 245899999964321 34455443 3445678885544 453222111110
Q ss_pred CCCccHHHHHHHHhcCCCceEEEc-cCCCC-----HHHHHHHHHcCCCEEEecHHh
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~n-GdI~s-----~eda~~~l~~g~DgVmIGRga 145 (282)
...+++..+..+.+. .++||+.+ .=... +..+......|+||+||=+-.
T Consensus 180 ~~~vdl~~i~~lk~~-~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 180 RNTLDLAAVAVIKEL-SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred HHHHHHHHHHHHHhc-cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 112345555555443 47899883 22223 555666666899999987544
No 294
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.25 E-value=2.9 Score=37.02 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442 30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 109 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~ 109 (282)
++++.+.+. ++..=+|. ++ .++..+ +++.+.+.|++.|.|.-++.. ..+.++++.+
T Consensus 7 ~~~~~l~~~---~~iaV~r~--~~---~~~a~~-i~~al~~~Gi~~iEitl~~~~---------------~~~~I~~l~~ 62 (212)
T PRK05718 7 SIEEILRAG---PVVPVIVI--NK---LEDAVP-LAKALVAGGLPVLEVTLRTPA---------------ALEAIRLIAK 62 (212)
T ss_pred HHHHHHHHC---CEEEEEEc--CC---HHHHHH-HHHHHHHcCCCEEEEecCCcc---------------HHHHHHHHHH
Confidence 445555443 33333663 22 233333 456677899999999966521 1566778877
Q ss_pred cCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
++++ -+|+.|-|.|.++++.+++.|+|.++.
T Consensus 63 ~~p~-~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 63 EVPE-ALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCC-CEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 7776 468999999999999999999998875
No 295
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.22 E-value=0.47 Score=43.22 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.++++|+++|.|-.-..+++|. ++.+..+.+. .++||...-=|.++-++.+....|||+|.+==
T Consensus 73 ~a~~y~~~GA~aiSVlTe~~~F~Gs------------~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~ 139 (254)
T PF00218_consen 73 IAKAYEEAGAAAISVLTEPKFFGGS------------LEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIA 139 (254)
T ss_dssp HHHHHHHTT-SEEEEE--SCCCHHH------------HHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEG
T ss_pred HHHHHHhcCCCEEEEECCCCCCCCC------------HHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhH
Confidence 4566789999999999876666664 6777777665 58999998889999999999999999998765
Q ss_pred HhhhCCc
Q 023442 144 AAYQNPW 150 (282)
Q Consensus 144 gal~nP~ 150 (282)
++|.+-.
T Consensus 140 ~~L~~~~ 146 (254)
T PF00218_consen 140 AILSDDQ 146 (254)
T ss_dssp GGSGHHH
T ss_pred HhCCHHH
Confidence 6655544
No 296
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.13 E-value=1 Score=39.54 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=57.2
Q ss_pred cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC
Q 023442 42 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121 (282)
Q Consensus 42 pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd 121 (282)
++..=+|. . +.++..+ +++.+.+.|+..+.|.-++.. ..+.+.+++++++.--+||.|-
T Consensus 11 ~~~~v~r~--~---~~~~~~~-~~~a~~~gGi~~iEvt~~~~~---------------~~~~i~~l~~~~~~~~~iGaGT 69 (206)
T PRK09140 11 PLIAILRG--I---TPDEALA-HVGALIEAGFRAIEIPLNSPD---------------PFDSIAALVKALGDRALIGAGT 69 (206)
T ss_pred CEEEEEeC--C---CHHHHHH-HHHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHcCCCcEEeEEe
Confidence 44444673 1 2334343 345567899999999876521 1456777877765434789999
Q ss_pred CCCHHHHHHHHHcCCCEEEec
Q 023442 122 INTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 122 I~s~eda~~~l~~g~DgVmIG 142 (282)
|.+.+++..+++.|+|+++.+
T Consensus 70 V~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 70 VLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred cCCHHHHHHHHHcCCCEEECC
Confidence 999999999999999999996
No 297
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.11 E-value=2.9 Score=38.86 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=33.0
Q ss_pred CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+++.+.++||| |.+.+.++.++|+|.+.+|.-...-|++
T Consensus 244 ~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~ 283 (289)
T PRK07896 244 APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSVPVL 283 (289)
T ss_pred CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCCcc
Confidence 467889999999 8999999999999999999644434553
No 298
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=92.03 E-value=1.7 Score=37.85 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=49.8
Q ss_pred HHHHhhcCCccEE--EEecCCCCCC-----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 32 MSVIAANTNVPVS--VKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 32 v~~v~~~~~ipvs--vKiR~G~d~~-----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
++++++.+++||. +|- .+++. .++++. . .+-++|++-|.+.+-.+... . .-.+.+
T Consensus 24 I~aik~~v~lPIIGi~K~--~y~~~~V~ITPT~~ev----~-~l~~aGadIIAlDaT~R~Rp-~----------~l~~li 85 (192)
T PF04131_consen 24 IRAIKKAVDLPIIGIIKR--DYPDSDVYITPTLKEV----D-ALAEAGADIIALDATDRPRP-E----------TLEELI 85 (192)
T ss_dssp HHHHHTTB-S-EEEE-B---SBTTSS--BS-SHHHH----H-HHHHCT-SEEEEE-SSSS-S-S-----------HHHHH
T ss_pred HHHHHHhcCCCEEEEEec--cCCCCCeEECCCHHHH----H-HHHHcCCCEEEEecCCCCCC-c----------CHHHHH
Confidence 5778899999983 342 22322 234442 2 24479999999987432110 1 114556
Q ss_pred HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442 105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 140 (282)
Q Consensus 105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm 140 (282)
.++.+++ +..=.||.|.||+..+.+.|+|.|.
T Consensus 86 ~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 86 REIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp HHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred HHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 6666654 4556799999999999999999764
No 299
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.03 E-value=1.1 Score=40.50 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
...++..++|+++++|.+ .|. +.+.+.+...++ ..++||+.+-|+ |++.+..+++. |||+++|..
T Consensus 170 ~dtver~~aDaVI~tG~~---TG~---------~~d~~el~~a~~-~~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~ 234 (263)
T COG0434 170 KDTVERGLADAVIVTGSR---TGS---------PPDLEELKLAKE-AVDTPVLVGSGV-NPENIEELLKI-ADGVIVGTS 234 (263)
T ss_pred HHHHHccCCCEEEEeccc---CCC---------CCCHHHHHHHHh-ccCCCEEEecCC-CHHHHHHHHHH-cCceEEEEE
Confidence 344677889999999854 343 223566655554 457999888887 89999999985 899999975
Q ss_pred hhhC
Q 023442 145 AYQN 148 (282)
Q Consensus 145 al~n 148 (282)
+=.+
T Consensus 235 lK~~ 238 (263)
T COG0434 235 LKKG 238 (263)
T ss_pred EccC
Confidence 5433
No 300
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.92 E-value=3.1 Score=38.53 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
..+.+.+.++.|...+++||++.+-.|+-+. ..+.+.+ +.++++|+..|++--
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~~tv-~~~~~aG~agi~IED 109 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGEA---FNVARTV-REMEDAGAAAVHIED 109 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHH-HHHHHcCCeEEEEec
Confidence 4455667778888888999999999998763 3444433 456799999999964
No 301
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.90 E-value=3 Score=38.68 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHhhcCCccEEEEe-cCCCC-CC--------CcHHHHHHHHHHHHHhCCCCEEEEecCCc--ccCCCCc
Q 023442 23 LDPKFVGEAMSVIAANTNVPVSVKC-RIGVD-DH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISP 90 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ipvsvKi-R~G~d-~~--------~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~ 90 (282)
.+.+...++++-.+ ..+++|-.=+ ++|-. +. .+.++..+| +++.|+|.|.|.-.|. .|+|.
T Consensus 115 eNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~F----v~~TgvD~LAvaiGt~HG~Y~~~-- 187 (286)
T PRK08610 115 ENVATTKKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQEL----VEKTGIDALAPALGSVHGPYKGE-- 187 (286)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHH----HHHHCCCEEEeeccccccccCCC--
Confidence 34455555555543 2355654433 22211 11 234444443 4689999999876552 34432
Q ss_pred CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEecHHh
Q 023442 91 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 91 ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRga 145 (282)
|.++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|+..+
T Consensus 188 ------p~Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l 236 (286)
T PRK08610 188 ------PKLGFKEMEEIGLS-TGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTEN 236 (286)
T ss_pred ------CCCCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHH
Confidence 45679988888765 58999998886655 77777888887777666443
No 302
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=91.84 E-value=1.1 Score=39.81 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc---CCCCcCCcCCCCCc
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPL 99 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~---~G~~~ad~~~i~~~ 99 (282)
..+.+.++.++.|+-. ++|++|-+---..- ++=.+ ++..|++.|+|.|.--|.|... .|..+- -++-.|
T Consensus 101 ~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l----d~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lgl-Iekaap- 173 (242)
T PF04481_consen 101 SAEEVLALTRETRSLLPDITLSVTVPHILPL----DQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGL-IEKAAP- 173 (242)
T ss_pred cHHHHHHHHHHHHHhCCCCceEEecCccccH----HHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHH-HHHHhH-
Confidence 4567778888888765 78888866422221 11122 4556789999999988766321 111000 000001
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
.+...+.+-+ ..++||+..-||.+.. +--++..|+.||-||.+.
T Consensus 174 TLAaay~ISr-~v~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 174 TLAAAYAISR-AVSIPVLCASGLSAVT-APMAIAAGASGVGVGSAV 217 (242)
T ss_pred HHHHHHHHHh-ccCCceEeccCcchhh-HHHHHHcCCcccchhHHh
Confidence 1333445555 3689999999986543 444555899999999765
No 303
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.69 E-value=2.8 Score=39.99 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE-EEecCCcccC-CCCcCCcC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-IIHSRKALLN-GISPAENR 94 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~~~-G~~~ad~~ 94 (282)
.||..+++.+++ +++.+ +++||.+|.-... +.+|+...+. .+.+.|...| .+|..++.+. +..
T Consensus 190 Iga~~~~n~~LL----~~va~-t~kPVllk~G~~~----t~ee~~~A~e-~i~~~Gn~~viL~erG~rtf~s~y~----- 254 (352)
T PRK13396 190 VGARNMQNFSLL----KKVGA-QDKPVLLKRGMAA----TIDEWLMAAE-YILAAGNPNVILCERGIRTFDRQYT----- 254 (352)
T ss_pred ECcccccCHHHH----HHHHc-cCCeEEEeCCCCC----CHHHHHHHHH-HHHHcCCCeEEEEecCCccCcCCCC-----
Confidence 478889997774 44433 4899999964321 3455554443 4456788544 4565443331 211
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEc-----cCC-CCHHHHHHHHHcCCCEEEecHH
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFTLN-----GGI-NTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi~n-----GdI-~s~eda~~~l~~g~DgVmIGRg 144 (282)
.-.+++..+..+++. .++|||.+ |.= .++.-+..++..||||+||=+-
T Consensus 255 -~~~~dl~ai~~lk~~-~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 255 -RNTLDLSVIPVLRSL-THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred -CCCcCHHHHHHHHHh-hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 123457777667554 48999775 321 1333444445589999999753
No 304
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=91.68 E-value=1.6 Score=39.66 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=68.1
Q ss_pred CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442 15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 92 (282)
Q Consensus 15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad 92 (282)
|..|-...-..+.-.++++.+++.+ ++||.+.+.. . +..+.++ .++.+++.|+|++.+....-. ..++.
T Consensus 39 GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~--~---~~~~~i~-~a~~a~~~Gad~v~v~pP~y~--~~~~~- 109 (281)
T cd00408 39 GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA--N---STREAIE-LARHAEEAGADGVLVVPPYYN--KPSQE- 109 (281)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC--c---cHHHHHH-HHHHHHHcCCCEEEECCCcCC--CCCHH-
Confidence 3335445555666667777777665 5888877642 1 2334444 456778999999999875311 11110
Q ss_pred cCCCCCccHHHHHHHHhcCCCceEE------EccCCCCHHHHHHHHH-cCCCEEE
Q 023442 93 NRTIPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 93 ~~~i~~~~~~~i~~l~~~~~~ipVi------~nGdI~s~eda~~~l~-~g~DgVm 140 (282)
--++++.++++. +++||+ ..|--.+++.+.++.+ ..+-|+=
T Consensus 110 ------~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK 157 (281)
T cd00408 110 ------GIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIK 157 (281)
T ss_pred ------HHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEE
Confidence 115566777765 688986 3577778999988886 4444443
No 305
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.66 E-value=3.3 Score=37.30 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred cccccCCHHHHHHHHHHHhhcCCc--cEEEEecCC--CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 18 GVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~~i--pvsvKiR~G--~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
|..-+-.++...+.+++++++.+- ++.|=.|.- +.....+++.++. ++.+.++|+|.+-+|+.+
T Consensus 116 ~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R-a~ay~~AGAD~v~v~~~~----------- 183 (243)
T cd00377 116 GGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER-AKAYAEAGADGIFVEGLK----------- 183 (243)
T ss_pred CCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH-HHHHHHcCCCEEEeCCCC-----------
Confidence 444455677777777777776532 444444521 1111234555554 456789999999999853
Q ss_pred CCCCCccHHHHHHHHhcCCCceEEEccCC-CCHHHHHHHHHcCCCEEEecHHh
Q 023442 94 RTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI-~s~eda~~~l~~g~DgVmIGRga 145 (282)
..+.+.++.++ +++||..|--= ...-...++-+.|+.-|.+|-.+
T Consensus 184 ------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 184 ------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred ------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHH
Confidence 14667777775 57888765211 10123444445699999988554
No 306
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.63 E-value=2.7 Score=38.51 Aligned_cols=56 Identities=7% Similarity=-0.086 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCcc-EEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 23 LDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~~ip-vsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
-..+.+...+++|...++.| |++.+- +... .+.++.++.+.++++++|++++.+-+
T Consensus 58 vtl~em~~h~~~V~r~~~~p~vvaD~p--fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd 115 (264)
T PRK00311 58 VTLDDMIYHTKAVARGAPRALVVADMP--FGSYQASPEQALRNAGRLMKEAGAHAVKLEG 115 (264)
T ss_pred cCHHHHHHHHHHHHhcCCCCcEEEeCC--CCCccCCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 35567777788888888775 777763 3322 23445556677888889999998876
No 307
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.62 E-value=3.7 Score=38.11 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
..+.+.+.++.|...+++||++.+-.|+-+.. ++.+.+ +.++++|+..|.+--
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~~tV-~~~~~aGvagi~IED 111 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVHYVV-PQYEAAGASAIVMED 111 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHH-HHHHHcCCeEEEEeC
Confidence 34566777888888999999999999987643 344433 456799999999954
No 308
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.58 E-value=1.4 Score=39.75 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCccEEEEecCCC-------------CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 27 FVGEAMSVIAANTNVPVSVKCRIGV-------------DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvsvKiR~G~-------------d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
...+.+++++++ .+||...+-.-+ ...+..+++++. ++.++++|++.|.+++.+
T Consensus 113 ~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~R-a~ay~~AGAd~i~~e~~~----------- 179 (240)
T cd06556 113 WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIAD-ALAYAPAGADLIVMECVP----------- 179 (240)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHH-HHHHHHcCCCEEEEcCCC-----------
Confidence 344566777665 477775443210 011234555554 567889999999998742
Q ss_pred CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 94 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
.+.+.++.++ +++|+++||.= .+|||-++-
T Consensus 180 -------~e~~~~i~~~-~~~P~~~~gag-----------~~~dgq~lv 209 (240)
T cd06556 180 -------VELAKQITEA-LAIPLAGIGAG-----------SGTDGQFLV 209 (240)
T ss_pred -------HHHHHHHHHh-CCCCEEEEecC-----------cCCCceEEe
Confidence 4555666665 68999988753 278876553
No 309
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.47 E-value=3.7 Score=38.16 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
..+.+.+.++.|.+.+++||++.+-.|+-+. ..+.+.+ +.++++|+..|++--
T Consensus 62 ~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~r~V-~~~~~aGaagi~IED 114 (292)
T PRK11320 62 TLDDVLIDVRRITDACDLPLLVDIDTGFGGA---FNIARTV-KSMIKAGAAAVHIED 114 (292)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHH-HHHHHcCCeEEEEec
Confidence 3456677778888888999999999998643 3444443 566899999999954
No 310
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.41 E-value=1.5 Score=37.69 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=48.0
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
++.+.+.|++.|.+.-++.. ..+.+..+.+.+++ ..++.|.|.+.+++..+++.|+|+|+.+
T Consensus 22 ~~~l~~~G~~~vev~~~~~~---------------~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 22 AEALIEGGIRAIEITLRTPG---------------ALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred HHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 45567899999999876421 14556677666654 3578999999999999999999999976
No 311
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=91.36 E-value=0.44 Score=43.75 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
+++|+++.||| |++.+.++.++|+|+|++|.-
T Consensus 229 ~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 229 PPVLLAAAGGI-NIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred CCceEEEECCC-CHHHHHHHHHcCCcEEEEChh
Confidence 57999999999 999999999999999977754
No 312
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=91.28 E-value=3.4 Score=36.02 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCC-CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G-~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
+.+.++++.+++. +.++.+=+-+. +...+.+.+.+..+.++..+.|.+...+.. + ..+.+
T Consensus 93 ~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~-----------------~~~~i 153 (215)
T PRK13813 93 DSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA-T-----------------RPERV 153 (215)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-C-----------------cchhH
Confidence 4456667776653 55553322221 211122233344556666777776554222 0 02223
Q ss_pred HHHHhcCC-CceEEEccCCCCH-HHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 105 YALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 105 ~~l~~~~~-~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++.+... ++.+ ..|||..- ..+.++++.|+|++.+||+++..+.
T Consensus 154 ~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 154 RYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD 200 (215)
T ss_pred HHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence 33333222 2333 66888753 2477777899999999999876665
No 313
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=91.20 E-value=4.8 Score=37.26 Aligned_cols=108 Identities=9% Similarity=0.036 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHHHHHhhc-C--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 21 LMLDPKFVGEAMSVIAAN-T--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 21 Ll~~p~~~~eiv~~v~~~-~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
.+-.++...+.|++++++ . +++|.+.+=.-+.. ..+++.++. ++...++|+|.|.+++... +
T Consensus 130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~-----~-------- 194 (285)
T TIGR02320 130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK-----D-------- 194 (285)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC-----C--------
Confidence 344566666666777665 3 34555542111111 135565654 5677899999999995211 0
Q ss_pred CccHHHHHHHHhc----CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 98 PLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 98 ~~~~~~i~~l~~~----~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.+.++.+. +|++|++.+.+-+-.-.+.++.+.|+.-|..|-.++
T Consensus 195 ---~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 195 ---PDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred ---HHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 2233333333 346788876532222245666668999999985554
No 314
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.17 E-value=0.87 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 127 EVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 127 da~~~l~~g~DgVmIGRgal~nP~i 151 (282)
...++++.|+|+|++||++...+.-
T Consensus 192 ~~~~ai~~Gad~iVvGR~I~~a~dP 216 (230)
T PRK00230 192 TPAQAIAAGSDYIVVGRPITQAADP 216 (230)
T ss_pred CHHHHHHcCCCEEEECCcccCCCCH
Confidence 4566667899999999998877663
No 315
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.11 E-value=3.1 Score=39.28 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=69.9
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEE-EecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsv-KiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-+.+--..+.+...+++|+..+..|++| .+-.|... .+.++.++.+.++++++|++++-+-+.+..
T Consensus 72 ~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~~----------- 139 (332)
T PLN02424 72 HDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSPS----------- 139 (332)
T ss_pred CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcHH-----------
Confidence 34555556778888889999988899988 77666222 234566666777778899999998874210
Q ss_pred CCCccHHHHHHHHhcCCCceEE-----------EccCC----CCHHHH-------HHHHHcCCCEEEe
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-----------LNGGI----NTVDEV-------NAALRKGAHHVMV 141 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-----------~nGdI----~s~eda-------~~~l~~g~DgVmI 141 (282)
..+.++.+.+ ..|||+ .-||- .+.+.+ +.+.+.||++|.+
T Consensus 140 ----~~~~I~~l~~--~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 140 ----RVTAAKAIVE--AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred ----HHHHHHHHHH--cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1345666664 378998 23551 244433 3333479999876
No 316
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.02 E-value=3.4 Score=39.10 Aligned_cols=43 Identities=16% Similarity=0.066 Sum_probs=33.4
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+-+++..+++.+. .++||.+...+.+++++.++++ ..+|.|.+
T Consensus 223 ~~d~~~~~~l~~~-~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 223 QHDYEGHARIASA-LRTPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred CcCHHHHHHHHHh-cCCCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 3356666677664 5899999888999999999998 66787654
No 317
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=90.92 E-value=0.31 Score=42.50 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=31.0
Q ss_pred eEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 115 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 115 pVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+|..-|||+. +++.++++.|+|+|.+|++++.+|..
T Consensus 172 ~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 172 LIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred eEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 3557899976 89999998999999999999987774
No 318
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.67 E-value=12 Score=38.36 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
+++.+.+...++.+++. +..+.+-+..-.....+.+.+.+ +++.++++|++.|.+---.+ ...| .--+
T Consensus 120 lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~-~a~~l~~~Gad~i~i~Dt~G---~l~P-------~~~~ 187 (593)
T PRK14040 120 MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVD-LAKQLEDMGVDSLCIKDMAG---LLKP-------YAAY 187 (593)
T ss_pred CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHH-HHHHHHHcCCCEEEECCCCC---CcCH-------HHHH
Confidence 56677777778887764 43332222210111123344444 45567789999888864221 1111 1124
Q ss_pred HHHHHHHhcCCCceEEEcc----CCCCHHHHHHHHHcCCCEEE-----ecHHhhhCCccchhhhHhhhh--CCCCCcccH
Q 023442 102 EYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHVM-----VGRAAYQNPWYTLGHVDTAIY--GAPSSGLTR 170 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~nG----dI~s~eda~~~l~~g~DgVm-----IGRgal~nP~if~~~~~~~~~--g~~~~~~~~ 170 (282)
+.+.++++.. ++||-.-+ |. ...-...+++.|||.|= +|++ -+||.+ ..+-..+. |... ..+.
T Consensus 188 ~lv~~lk~~~-~~pi~~H~Hnt~Gl-A~An~laAieAGa~~vD~ai~glG~~-~Gn~~l--e~vv~~L~~~~~~~-gidl 261 (593)
T PRK14040 188 ELVSRIKKRV-DVPLHLHCHATTGL-STATLLKAIEAGIDGVDTAISSMSMT-YGHSAT--ETLVATLEGTERDT-GLDI 261 (593)
T ss_pred HHHHHHHHhc-CCeEEEEECCCCch-HHHHHHHHHHcCCCEEEecccccccc-ccchhH--HHHHHHHHhcCCCc-CCCH
Confidence 5566776654 68875422 22 23334445557888663 4444 378876 23222121 2111 1232
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHhhHHHHHHHHHH
Q 023442 171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN--GLFKRKADAAFQTCKTVKSFLEE 235 (282)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~ 235 (282)
+.+..+-+|+..+...|..-++..... .---|.+.+||. +.+..++.+. .-...+.+.+++
T Consensus 262 -~~l~~is~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~PGG~~Snl~~ql~~~-g~~~~~~evl~e 324 (593)
T PRK14040 262 -LKLEEIAAYFREVRKKYAKFEGQLKGV--DSRILVAQVPGGMLTNMESQLKEQ-GAADKLDEVLAE 324 (593)
T ss_pred -HHHHHHHHHHHHHHHHhccCCcccccC--cccEEEEcCCCchHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 445555566666666664311111100 011267778887 6676666432 223344444443
No 319
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.57 E-value=5.9 Score=36.66 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEecH
Q 023442 67 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIGR 143 (282)
.+++.|+|+|.|.-.|. .|.+. |.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+.
T Consensus 163 Fv~~TgvD~LAvaiGt~HG~y~~~--------p~Ld~~~L~~I~~~-~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 163 FVERTGIDSLAVAIGTAHGLYKGE--------PKLDFERLAEIREK-VSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred HHHHhCCCEEeeccCccccccCCC--------CcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 34679999999875552 34331 45679988888664 589999877644 45667778888988888887
Q ss_pred Hhh
Q 023442 144 AAY 146 (282)
Q Consensus 144 gal 146 (282)
.+.
T Consensus 234 ~l~ 236 (284)
T PRK12737 234 ELK 236 (284)
T ss_pred HHH
Confidence 653
No 320
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=90.51 E-value=4.5 Score=38.43 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=51.0
Q ss_pred HHHHHHHHH--hCCCCEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-EccCCCCHHHHHHHHH--
Q 023442 61 CDFIYKVSS--LSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEVNAALR-- 133 (282)
Q Consensus 61 ~~~v~~~le--~~Gv~~i~VH~Rt--~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi-~nGdI~s~eda~~~l~-- 133 (282)
+....+++. +.|+|.+-+---. ....|......-+-..-..+.+.++.+. ..+|+| ++|++ |.+++.+.++
T Consensus 186 V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a-~~~P~vvlsgG~-~~~~f~~~l~~A 263 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDA-TDLPFIFLSAGV-SPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhh-CCCCEEEECCCC-CHHHHHHHHHHH
Confidence 334566676 4999988774211 1112221000000000012345566554 467865 58887 7777777765
Q ss_pred --cCC--CEEEecHHhhhCCcc
Q 023442 134 --KGA--HHVMVGRAAYQNPWY 151 (282)
Q Consensus 134 --~g~--DgVmIGRgal~nP~i 151 (282)
.|+ .||.+||....++--
T Consensus 264 ~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 264 CEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHcCCCccchhhhHHHHhhhhc
Confidence 789 999999999777643
No 321
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=90.48 E-value=0.76 Score=41.95 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.+.++ ++..++||...=||.|+++++++. .++|||.||.+++.
T Consensus 189 ~i~~i-k~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 189 FIKRI-KKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp HHHHH-HHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred HHHHH-HhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 34444 445699999999999999999999 79999999988743
No 322
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.48 E-value=3 Score=39.61 Aligned_cols=41 Identities=7% Similarity=-0.008 Sum_probs=31.9
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHH-cCCCEEEe
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~-~g~DgVmI 141 (282)
+++..+++.+. .++||.+...+.+ +++++++++ ..+|.|.+
T Consensus 228 d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 228 SISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred hHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 45556666554 6899988888999 999999998 66887765
No 323
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=90.38 E-value=5.7 Score=36.72 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=51.5
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG 142 (282)
+.+++.|+|+|.|.-.|. .|++. |.++|+.+.++.+. .++|++.-|+=. +.++++++++.|+.=|=|+
T Consensus 160 ~Fv~~TgvD~LAvaiGt~HG~yk~~--------p~Ldf~~L~~I~~~-~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 160 EFVEATGVDSLAVAIGTAHGLYKKT--------PKLDFDRLAEIREV-VDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred HHHHHHCcCEEecccCccccCcCCC--------CccCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 345689999999876552 34431 46789999888765 589999887755 4566777777888878777
Q ss_pred HHhh
Q 023442 143 RAAY 146 (282)
Q Consensus 143 Rgal 146 (282)
..+.
T Consensus 231 T~l~ 234 (282)
T TIGR01858 231 TELK 234 (282)
T ss_pred cHHH
Confidence 6553
No 324
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.37 E-value=5.7 Score=36.71 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=43.0
Q ss_pred hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
++|+|.|-+-.-+ .+.+++.++.. ...|+.++||| |.+.+.++.++|+|.+.+|.--..-
T Consensus 212 ~~gaDiI~LDn~s------------------~e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 212 ELGVDAVLLDNMT------------------PDTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred HcCCCEEEeCCCC------------------HHHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 7899999765422 12233332211 35789999999 8999999999999999999643324
Q ss_pred Cc
Q 023442 149 PW 150 (282)
Q Consensus 149 P~ 150 (282)
|+
T Consensus 273 ~~ 274 (281)
T PRK06106 273 PV 274 (281)
T ss_pred Cc
Confidence 44
No 325
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.35 E-value=3.5 Score=36.17 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=59.6
Q ss_pred ccccc--CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCc-HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442 18 GVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 94 (282)
Q Consensus 18 Gs~Ll--~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~-~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~ 94 (282)
|...+ ..++. ++.+++.+++|+..-.|.++++.+- +....+++ +.+.++|++.|.+-.+.... |.+ .
T Consensus 40 G~~~~~~~~~~~----~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~-~~a~~aGad~I~~~~~~~~~----p~~-~ 109 (219)
T cd04729 40 GAVGIRANGVED----IRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEV-DALAAAGADIIALDATDRPR----PDG-E 109 (219)
T ss_pred CCeEEEcCCHHH----HHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHH-HHHHHcCCCEEEEeCCCCCC----CCC-c
Confidence 44444 55543 4555555788986545545532110 00001122 34568999988886532110 100 0
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
...+.+.++.+.. ++|++. ++.|++++..+.+.|+|.+.+
T Consensus 110 ----~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 110 ----TLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred ----CHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcCCCEEEc
Confidence 0134444555544 577766 688999998888899999865
No 326
>PRK14567 triosephosphate isomerase; Provisional
Probab=90.30 E-value=0.36 Score=43.91 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442 112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 153 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~ 153 (282)
.+++|++.|.| +++++.++++ ..+||+.||++.+ +|.-|.
T Consensus 201 ~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~ 241 (253)
T PRK14567 201 KNIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFN 241 (253)
T ss_pred ccceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHH
Confidence 36899999999 9999999999 7799999999887 665553
No 327
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.14 E-value=5 Score=36.16 Aligned_cols=54 Identities=6% Similarity=-0.062 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 24 DPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
..+.+...+++|++.+. .||++.+=.|+... .++..+.+.+ +.++|++.|.+-+
T Consensus 56 tl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~~-l~~aGa~gv~iED 110 (240)
T cd06556 56 PVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAKT-FMRAGAAGVKIEG 110 (240)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHHH-HHHcCCcEEEEcC
Confidence 45677788888888775 79999998887652 2344554444 4569999999876
No 328
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.09 E-value=4.8 Score=37.37 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=44.0
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|+|.|-+---+ -+.+++.++.. .++.+.++||| |.+.+.++..+|+|.+.+|.--..
T Consensus 214 ~~agaDiImLDnms------------------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galths 274 (290)
T PRK06559 214 AAAGADIIMLDNMS------------------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHS 274 (290)
T ss_pred HHcCCCEEEECCCC------------------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 37899999765422 12233333211 26789999999 899999999999999999964433
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
-|++
T Consensus 275 a~~~ 278 (290)
T PRK06559 275 AKSL 278 (290)
T ss_pred Cccc
Confidence 4543
No 329
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=89.87 E-value=2.7 Score=37.15 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=26.5
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+..+...||| +++.+....+.|+|.+++||++...+.
T Consensus 163 ~~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 163 GFKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred CCeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCC
Confidence 3447888999 455555544478999999998766655
No 330
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.62 E-value=5.6 Score=37.00 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.5
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|+|.|-+-.-+ -+.+++.++.. .++.+.++||| |.+.+.++.++|+|.+.+|.--..
T Consensus 222 ~~aGaDiImLDnms------------------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galths 282 (294)
T PRK06978 222 LAHGAQSVLLDNFT------------------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKD 282 (294)
T ss_pred HHcCCCEEEECCCC------------------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 37999999775432 12233333221 25789999999 899999999999999999976555
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
-||+
T Consensus 283 a~~l 286 (294)
T PRK06978 283 VRAT 286 (294)
T ss_pred Cccc
Confidence 5664
No 331
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=89.59 E-value=1.1 Score=42.36 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=60.2
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++..++.|+++|.|-.-..+++|. ++++.++.+..+++||.--==|.++-++.+....|||+|.+==
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~Gs------------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQGS------------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCCC------------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 5667889999999998876677775 6777666554368999887779999999999999999998776
Q ss_pred HhhhCCcc
Q 023442 144 AAYQNPWY 151 (282)
Q Consensus 144 gal~nP~i 151 (282)
++|.+-.+
T Consensus 212 aiL~~~~L 219 (338)
T PLN02460 212 AVLPDLDI 219 (338)
T ss_pred HhCCHHHH
Confidence 77765454
No 332
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.57 E-value=12 Score=34.20 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=69.6
Q ss_pred cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
..|=+..+|+ -| |.+.+--..+.+....++|+... +..+.+.+-.|... .+.++.++...++++++|+|++-+-|.
T Consensus 41 LVGDSlgmv~-~G-~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~-~s~e~av~nA~rl~ke~GadaVKlEGg 117 (261)
T PF02548_consen 41 LVGDSLGMVV-LG-YDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQ-ASPEQAVRNAGRLMKEAGADAVKLEGG 117 (261)
T ss_dssp EE-TTHHHHT-T---SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSST-SSHHHHHHHHHHHHHTTT-SEEEEEBS
T ss_pred EeCCcHHHhe-eC-CCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccccc-CCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 3444555555 34 47777778888888899998876 44566666655442 234555666778888899999999874
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEc-----------cCCC----CHHHHHHHHH-------cCCCEE
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GGIN----TVDEVNAALR-------KGAHHV 139 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~n-----------GdI~----s~eda~~~l~-------~g~DgV 139 (282)
... .+.++.+.+. .|||++- ||-. |.+++.++++ .||-++
T Consensus 118 ~~~----------------~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~i 179 (261)
T PF02548_consen 118 AEI----------------AETIKALVDA--GIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAI 179 (261)
T ss_dssp GGG----------------HHHHHHHHHT--T--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEE
T ss_pred hhH----------------HHHHHHHHHC--CCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEE
Confidence 311 3556677763 8999874 3332 6677766653 588877
Q ss_pred Ee
Q 023442 140 MV 141 (282)
Q Consensus 140 mI 141 (282)
.+
T Consensus 180 vl 181 (261)
T PF02548_consen 180 VL 181 (261)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 333
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.42 E-value=5.8 Score=36.90 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~ 80 (282)
.+.+.+.++.|...+++||++.+-.|+-+..+ +.+. .+.++++|+..|++--
T Consensus 62 ~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~---v~r~-V~~~~~aGaagi~IED 113 (294)
T TIGR02319 62 VSEQAINAKNIVLAVDVPVIMDADAGYGNAMS---VWRA-TREFERVGIVGYHLED 113 (294)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCcHH---HHHH-HHHHHHcCCeEEEEEC
Confidence 34566777888888899999999999876433 3343 3566899999999954
No 334
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=89.38 E-value=7.1 Score=36.22 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=52.5
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEe
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMV 141 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~-~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmI 141 (282)
+.+++.|+|.|.|.-.|. .|++. |. ++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|
T Consensus 165 ~Fv~~TgvD~LAvaiGt~HG~y~~~--------p~~Ld~~~L~~I~~~-v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 235 (288)
T TIGR00167 165 EFVKLTGVDSLAAAIGNVHGVYKGE--------PKGLDFERLEEIQKY-VNLPLVLHGGSGIPDEEIKKAISLGVVKVNI 235 (288)
T ss_pred HHHhccCCcEEeeccCccccccCCC--------CCccCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEc
Confidence 345689999999976553 33321 23 679988888765 58999998887655 6788888888888877
Q ss_pred cHHhh
Q 023442 142 GRAAY 146 (282)
Q Consensus 142 GRgal 146 (282)
+..+.
T Consensus 236 ~T~l~ 240 (288)
T TIGR00167 236 DTELQ 240 (288)
T ss_pred ChHHH
Confidence 76653
No 335
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=89.26 E-value=5.9 Score=36.93 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=44.1
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~ 147 (282)
.++|+|.|-+---+ .+.+++.++. ..++.+.++||| |.+.+.++.++|+|.+.+|.---.
T Consensus 225 ~~~gaDiI~LDn~s------------------~e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galths 285 (296)
T PRK09016 225 LKAGADIIMLDNFT------------------TEQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKH 285 (296)
T ss_pred HHcCCCEEEeCCCC------------------hHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 36899988765422 1223333332 136889999999 899999999999999999964444
Q ss_pred CCcc
Q 023442 148 NPWY 151 (282)
Q Consensus 148 nP~i 151 (282)
-||+
T Consensus 286 a~~l 289 (296)
T PRK09016 286 VQAL 289 (296)
T ss_pred CCcc
Confidence 4443
No 336
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.25 E-value=3.5 Score=38.12 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 79 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH 79 (282)
.+.+.+.++.|..++++||+|.+=.|+-+. ...++.+ +.++++|+..+++-
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~---~nvartV-~~~~~aG~agi~iE 113 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVDIDTGFGEA---LNVARTV-RELEQAGAAGIHIE 113 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCCCcH---HHHHHHH-HHHHHcCcceeeee
Confidence 566778888888999999999999998763 3344443 45689999999885
No 337
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.22 E-value=8.2 Score=35.72 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEecH
Q 023442 67 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIGR 143 (282)
.+++.|+|+|.|.-.|. .|.+. |.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+.
T Consensus 163 Fv~~TgvD~LAvaiGt~HG~y~~~--------p~Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 163 FVEATGIDSLAVAIGTAHGMYKGE--------PKLDFDRLENIRQW-VNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred HHHHHCcCEEeeccCccccccCCC--------CcCCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 34688999999875552 34431 45679988888765 589999877644 45777788888988888887
Q ss_pred Hhh
Q 023442 144 AAY 146 (282)
Q Consensus 144 gal 146 (282)
.+.
T Consensus 234 ~l~ 236 (284)
T PRK09195 234 ELK 236 (284)
T ss_pred HHH
Confidence 765
No 338
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.19 E-value=0.83 Score=43.71 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=35.8
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
.+.|+.+..+.+.. +.|||.-| |.|++|++++.+.|||+|.++
T Consensus 222 ~~~w~~i~~ir~~~-~~pviiKg-V~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLW-PHKLLVKG-IVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhC-CCCEEEec-CCCHHHHHHHHHCCcCEEEEC
Confidence 35688888887754 67888876 999999999999999999874
No 339
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.16 E-value=8.4 Score=35.68 Aligned_cols=106 Identities=7% Similarity=0.070 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442 22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
+-.++...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|-+|+-+.
T Consensus 124 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R-a~ay~~AGAD~vfi~g~~~----------------- 185 (285)
T TIGR02317 124 LVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIER-AKAYVEAGADMIFPEALTS----------------- 185 (285)
T ss_pred ccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHH-HHHHHHcCCCEEEeCCCCC-----------------
Confidence 334554455556666543 445666556421111235555555 4566789999999987321
Q ss_pred HHHHHHHHhcCCCceEE---EccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 101 YEYYYALLRDFPDLTFT---LNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi---~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.+.++.++. +.|+. .+|+-.-.-+++++.+.|+.-|..|-.++
T Consensus 186 ~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 186 LEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence 34556676654 46773 33332111245555567999999995553
No 340
>PRK08005 epimerase; Validated
Probab=89.14 E-value=8.2 Score=34.13 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
++-++++.+...+..|-.-||| +.+.+.++.+.|+|.+.+|+++.+++.
T Consensus 151 ~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 151 CEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 4455555443334468899999 689999999999999999999876655
No 341
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=89.05 E-value=4.4 Score=37.12 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=60.2
Q ss_pred ccccCCHHHHHHHHHHHhhc-------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442 19 VSLMLDPKFVGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 91 (282)
Q Consensus 19 s~Ll~~p~~~~eiv~~v~~~-------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a 91 (282)
+.+--..+.+...+++|++. +++|++ ++.+ .++.++.+.++++++|++++.+-+....
T Consensus 54 ~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~-----sy~~---~e~a~~na~rl~~eaGa~aVkiEgg~~~------- 118 (263)
T TIGR00222 54 STLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM-----SYAT---PEQALKNAARVMQETGANAVKLEGGEWL------- 118 (263)
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC-----CCCC---HHHHHHHHHHHHHHhCCeEEEEcCcHhH-------
Confidence 33444567778888888887 455555 3432 4555666778888899999998873210
Q ss_pred CcCCCCCccHHHHHHHHhcCCCceEE---------Ec--cCC----CCHHHHHHHH-------HcCCCEEEe
Q 023442 92 ENRTIPPLKYEYYYALLRDFPDLTFT---------LN--GGI----NTVDEVNAAL-------RKGAHHVMV 141 (282)
Q Consensus 92 d~~~i~~~~~~~i~~l~~~~~~ipVi---------~n--GdI----~s~eda~~~l-------~~g~DgVmI 141 (282)
-+.+..+.+ ..|||+ ++ ||. .|.+++.+++ +.||+++.+
T Consensus 119 ---------~~~i~~l~~--~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 119 ---------VETVQMLTE--RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred ---------HHHHHHHHH--CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 233444444 378888 33 544 2455444443 379999876
No 342
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.96 E-value=6.6 Score=33.85 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442 30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 109 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~ 109 (282)
++++.+.+. ++..=+|.- +.++..+. ++.+-+.|+..|.+.-++.. ..+.+..+.+
T Consensus 4 ~~~~~l~~~---~~~~v~r~~-----~~~~~~~~-~~~~~~~Gv~~vqlr~k~~~---------------~~e~~~~~~~ 59 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRAP-----DLELGLQM-AEAVAAGGMRLIEITWNSDQ---------------PAELISQLRE 59 (187)
T ss_pred HHHHHHHhC---CEEEEEEcC-----CHHHHHHH-HHHHHHCCCCEEEEeCCCCC---------------HHHHHHHHHH
Confidence 455555543 344436642 22333443 34455899999999876531 0233434433
Q ss_pred cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
.. ..-.++.|-+.+.+++..+++.|+|+|++|-
T Consensus 60 ~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 60 KL-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred hC-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 33 3445788999999999999999999998873
No 343
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.89 E-value=20 Score=36.62 Aligned_cols=192 Identities=15% Similarity=0.154 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
+++.+.+...++.+++. +.-+.+=+-.......+.+..++. ++.+.++|++.|.+---.+ ...|.+ -.
T Consensus 119 lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~-a~~l~~~Gad~I~i~Dt~G---~~~P~~-------~~ 186 (592)
T PRK09282 119 LNDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVEL-AKELEEMGCDSICIKDMAG---LLTPYA-------AY 186 (592)
T ss_pred cChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHH-HHHHHHcCCCEEEECCcCC---CcCHHH-------HH
Confidence 45677777777777654 433432221111111234444443 4556789999998864221 111211 24
Q ss_pred HHHHHHHhcCCCceEEE----ccCCCCHHHHHHHHHcCCCEEE-----ecHHhhhCCccchhhhHhhh--hCCCCCcccH
Q 023442 102 EYYYALLRDFPDLTFTL----NGGINTVDEVNAALRKGAHHVM-----VGRAAYQNPWYTLGHVDTAI--YGAPSSGLTR 170 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~----nGdI~s~eda~~~l~~g~DgVm-----IGRgal~nP~if~~~~~~~~--~g~~~~~~~~ 170 (282)
+.+.++++.+ ++||-. +-|. ...-...+++.|||.|= +|+++ +||.+ ..+-..+ .|.. ...+.
T Consensus 187 ~lv~~lk~~~-~~pi~~H~Hnt~Gl-a~An~laAv~aGad~vD~ai~g~g~~a-gn~~~--e~vv~~L~~~g~~-~~idl 260 (592)
T PRK09282 187 ELVKALKEEV-DLPVQLHSHCTSGL-APMTYLKAVEAGVDIIDTAISPLAFGT-SQPPT--ESMVAALKGTPYD-TGLDL 260 (592)
T ss_pred HHHHHHHHhC-CCeEEEEEcCCCCc-HHHHHHHHHHhCCCEEEeeccccCCCc-CCHhH--HHHHHHHHhCCCC-CccCH
Confidence 5566666654 577754 3343 44455556667888662 45554 58876 2322212 2221 12232
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHhhHHHHHHHHHH
Q 023442 171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN--GLFKRKADAAFQTCKTVKSFLEE 235 (282)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~ 235 (282)
+.+..+-+|...+...|..-++....... --|.+.+||. +.+..++.+. .-...+.+.+++
T Consensus 261 -~~l~~~s~~~~~~~~~y~~~~~~~~~~~~--~v~~~~~pGg~~snl~~q~~~~-g~~d~~~~vl~e 323 (592)
T PRK09282 261 -ELLFEIAEYFREVRKKYKQFESEFTIVDT--RVLIHQVPGGMISNLVSQLKEQ-NALDKLDEVLEE 323 (592)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCccccCCc--cEEEEcCCCcHHHHHHHHHHHC-CcHHHHHHHHHH
Confidence 34445555555555556321111111111 1257778888 6676666332 222344444443
No 344
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=88.56 E-value=0.96 Score=43.63 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=36.8
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.|+.+..+++. .++|||.- +|.|.+|++.+.+.|||+|.+.
T Consensus 238 ~~~tW~~i~~lr~~-~~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREW-TDLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHh-cCCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 34679998888775 47898766 6799999999999999999975
No 345
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=88.55 E-value=1.8 Score=41.41 Aligned_cols=71 Identities=13% Similarity=0.325 Sum_probs=43.7
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhh---hhCCCCCcccHHHHHHHHHHHHHHHHHhc
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA---IYGAPSSGLTRRQVVEKYQIYGDAILGTY 188 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (282)
+++|++.|+| +++.+.+++. .++||+.+|++.+ +|.-|..-+... ..|... .-++..|.+.+..+++..
T Consensus 213 ~v~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~asl-~~~~f~~Ii~~~~~~~~~~~~-----~~~~~~~~~~a~~ii~~l 285 (355)
T PRK14905 213 KIPVLYGGSV-NLENANELIMKPHIDGLFIGRSAW-DAQCFHALIADALKALAGSKI-----DPIIHKFSEIAIQLIDHL 285 (355)
T ss_pred ceeEEEeCcC-CHHHHHHHhcCCCCCEEEechhhc-cHHHHHHHHHHHHHhccCCcc-----cHHHHhHHHHHHHHHHHh
Confidence 5899999999 5555556665 8999999999998 665554333322 223211 123444555555566666
Q ss_pred CC
Q 023442 189 GN 190 (282)
Q Consensus 189 g~ 190 (282)
|.
T Consensus 286 GG 287 (355)
T PRK14905 286 GG 287 (355)
T ss_pred CC
Confidence 53
No 346
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.45 E-value=6.7 Score=37.92 Aligned_cols=105 Identities=6% Similarity=-0.009 Sum_probs=58.6
Q ss_pred HHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-----cCCcccCCCCcCCcCCCCCccHH
Q 023442 29 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-----SRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 29 ~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-----~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
.+-+..+++.. ++||.+=+--+.+ .++..+ +++.++++|+|+|.+- +..-.-.|.. ..+ +.+
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s----~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~---~gq----~~e 168 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYN----KDAWEE-IIERVEETGVDALEINFSCPHGMPERKMGAA---VGQ----DCD 168 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCC----HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCccchh---hcc----CHH
Confidence 33355666655 6798886532222 233333 3456788999999973 2110001110 000 123
Q ss_pred HHHHH---HhcCCCceEE--EccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442 103 YYYAL---LRDFPDLTFT--LNGGINTVDEVNAALR-KGAHHVMVGRAA 145 (282)
Q Consensus 103 ~i~~l---~~~~~~ipVi--~nGdI~s~eda~~~l~-~g~DgVmIGRga 145 (282)
.+.++ +++..++||+ ..-++.+..++.+... .|+|||.+-=.+
T Consensus 169 ~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 169 LLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 33333 2334578987 4778888888888665 999999775433
No 347
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=88.43 E-value=0.45 Score=40.94 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.++|||+.|=|.|.+|+.++++.|+++|.-..--|
T Consensus 139 ~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 139 TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKEL 173 (175)
T ss_dssp CSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHH
T ss_pred cCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHh
Confidence 47999999999999999999999999999875443
No 348
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.41 E-value=8.2 Score=35.70 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=43.2
Q ss_pred hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
++|+|.|-+---+ .+.+.+.++.. ....+.++||| |.+.+.++..+|+|.+.+|.--..-
T Consensus 211 ~~gaDiImLDn~s------------------~e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 211 AAGVDTIMLDNFS------------------LDDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred hcCCCEEEECCCC------------------HHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 6899998765422 12222332211 24578999999 8999999999999999999644444
Q ss_pred Ccc
Q 023442 149 PWY 151 (282)
Q Consensus 149 P~i 151 (282)
|++
T Consensus 272 ~~~ 274 (281)
T PRK06543 272 RAL 274 (281)
T ss_pred ccc
Confidence 543
No 349
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.39 E-value=2.5 Score=39.16 Aligned_cols=73 Identities=7% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEe
Q 023442 65 YKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMV 141 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmI 141 (282)
.+.+++.|+|.|.|.-.|. .|++ |.++++.+.++.+. .++|++.-|+=-++ ++++++++.|+--|=|
T Consensus 159 ~~Fv~~TgvD~LAvaiGt~HG~Y~~---------p~l~~~~l~~I~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 159 KDFVERTGCDMLAVSIGNVHGLEDI---------PRIDIPLLKRIAEV-SPVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred HHHHHHhCcCeeehhccccccCCCC---------CCcCHHHHHHHHhh-CCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 3445789999999875552 3322 45668888888765 58999988876655 7788888899999999
Q ss_pred cHHhhh
Q 023442 142 GRAAYQ 147 (282)
Q Consensus 142 GRgal~ 147 (282)
++.+..
T Consensus 229 ~Tel~~ 234 (283)
T PRK07998 229 ASDLRK 234 (283)
T ss_pred CHHHHH
Confidence 987643
No 350
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=88.25 E-value=2.3 Score=37.23 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=29.1
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.++.|..-||| |.+.+.++.+.|+|.+.+|+++.++
T Consensus 165 ~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 165 LDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp CGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred CceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 46889999999 6778989999999999999988653
No 351
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=87.98 E-value=9.5 Score=35.18 Aligned_cols=72 Identities=11% Similarity=0.258 Sum_probs=51.9
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIG 142 (282)
+.+++.|+|+|.|.-.|. .|.+. -|.++|+.+.++.+. .++|++.-|+=-++ ++++++++.|+-=|=|+
T Consensus 155 ~Fv~~TgvD~LAvsiGt~HG~Y~~~-------~p~L~~~~L~~i~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 155 EFVEETGVDALAVAIGTSHGAYKGG-------EPKLDFDRLKEIAER-VNVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred HHHHHHCCCEEEeccCccccccCCC-------CCccCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 345678999999864442 33321 145679988888775 48999988886655 66888888898888888
Q ss_pred HHh
Q 023442 143 RAA 145 (282)
Q Consensus 143 Rga 145 (282)
..+
T Consensus 227 T~l 229 (276)
T cd00947 227 TDL 229 (276)
T ss_pred hHH
Confidence 765
No 352
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.89 E-value=12 Score=34.16 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442 26 KFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 104 (282)
Q Consensus 26 ~~~~eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i 104 (282)
+...+-+...++. .+.|+.+=++- . + .+++.+ +++.++++|+|+|.++.......+. .+...-+..-.+.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g-~-~---~~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~--~~~~~~~~~~~eiv 154 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGG-S-S---KEDYVE-LARKIERAGAKALELNLSCPNVGGG--RQLGQDPEAVANLL 154 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecc-C-C---HHHHHH-HHHHHHHhCCCEEEEEcCCCCCCCC--cccccCHHHHHHHH
Confidence 4333334444444 47888887652 2 2 234443 3556778899999998543211110 00000011112334
Q ss_pred HHHHhcCCCceEEE--ccCCCCHHHHHH---HHH-cCCCEEEec
Q 023442 105 YALLRDFPDLTFTL--NGGINTVDEVNA---ALR-KGAHHVMVG 142 (282)
Q Consensus 105 ~~l~~~~~~ipVi~--nGdI~s~eda~~---~l~-~g~DgVmIG 142 (282)
.++++. .++||+. ++++ +.++..+ .++ .|+|+|.+-
T Consensus 155 ~~vr~~-~~~pv~vKl~~~~-~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 155 KAVKAA-VDIPLLVKLSPYF-DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHc-cCCCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 444443 4788764 4544 4333333 333 899999875
No 353
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=87.87 E-value=1.4 Score=40.15 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=59.7
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++..++.|+++|.|-....+++|. ++.+..+.. ..++||..===|.++-++.++...|+|+|.+==
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs------------~e~L~~v~~-~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~ 137 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGS------------FEDLRAVRA-AVDLPVLRKDFIIDPYQIYEARAAGADAVLLIV 137 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCC------------HHHHHHHHH-hcCCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence 4567789999999999887777885 677766655 468999777778899999999999999997766
Q ss_pred HhhhCCcc
Q 023442 144 AAYQNPWY 151 (282)
Q Consensus 144 gal~nP~i 151 (282)
++|.+-.+
T Consensus 138 ~~L~~~~l 145 (254)
T COG0134 138 AALDDEQL 145 (254)
T ss_pred HhcCHHHH
Confidence 66666543
No 354
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=87.57 E-value=8.4 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=32.1
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
++-|-.-||| +.+.+.++.+.|+|-+..|+++.++++
T Consensus 169 ~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d 205 (220)
T COG0036 169 DILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD 205 (220)
T ss_pred CeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence 4557789998 889999999899999999998877777
No 355
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=87.55 E-value=3 Score=38.49 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=47.1
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHVM 140 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgVm 140 (282)
+.+.+.|++.|.+-|-|+.....+..+ +.+.+...++.. .++||+++=+-.|.+++.++.+ .|+|+||
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~~~Ls~~E-------r~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~ 100 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEPGSLTLEE-------RKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAM 100 (294)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHH-------HHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEE
Confidence 345579999999999876433332111 122333333322 2589875444456666655443 7999999
Q ss_pred ecHHhhhCC
Q 023442 141 VGRAAYQNP 149 (282)
Q Consensus 141 IGRgal~nP 149 (282)
+.-..+..|
T Consensus 101 v~pP~y~~~ 109 (294)
T TIGR02313 101 VIVPYYNKP 109 (294)
T ss_pred EcCccCCCC
Confidence 998777666
No 356
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=87.52 E-value=9 Score=35.47 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442 28 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 106 (282)
Q Consensus 28 ~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~ 106 (282)
+.+.++.+++.. ..+|.|=++ +.++..+ . .++|+|.|-+---+ -+.+.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~e----a-~~agaDiI~LDn~~------------------~e~l~~ 225 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIA----A-LRAQPDVLQLDKFS------------------PQQATE 225 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-------CHHHHHH----H-HHcCCCEEEECCCC------------------HHHHHH
Confidence 445666666543 234554432 3444322 2 37999999873311 122222
Q ss_pred H---Hh-cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 107 L---LR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 107 l---~~-~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
. ++ ..+++.+.++||| |++.+.++.++|+|.+.+|- +..-|++
T Consensus 226 av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ga-l~~a~~~ 272 (284)
T PRK06096 226 IAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSA-PYYAAPA 272 (284)
T ss_pred HHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECc-cccCCCc
Confidence 2 22 1357889999999 89999999999999998884 3444553
No 357
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=87.38 E-value=1.1 Score=40.52 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=32.6
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
+++|++.|+|.. +++.++++ ..+||+.||++.+ +|.-|
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f 237 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESF 237 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHH
Confidence 689999999966 99999999 5699999999998 45444
No 358
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.30 E-value=5.2 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=44.8
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.++|++.+-+.+-.. ..| -.+++.+..=++++|++..||| |.+.+.+.++.|+..+..|..+.
T Consensus 114 ~~~Ga~~vK~FPa~~-~GG-------------~~yikal~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 114 REEGYTVLKFFPAEQ-AGG-------------AAFLKALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHCCCCEEEECCchh-hCC-------------HHHHHHHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence 478999988876221 112 2556666665789999999999 77999999997666666665444
No 359
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.23 E-value=6.7 Score=36.49 Aligned_cols=104 Identities=10% Similarity=0.019 Sum_probs=60.4
Q ss_pred CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442 15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 92 (282)
Q Consensus 15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad 92 (282)
|..|-...-..+.-.++++.+.+.+ ++||.+-+-. . +..+.++ .++.+++.|+|++-+..-. |...+.
T Consensus 50 GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~--~---~t~~ai~-~a~~A~~~Gad~vlv~~P~--y~~~~~-- 119 (309)
T cd00952 50 GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT--L---NTRDTIA-RTRALLDLGADGTMLGRPM--WLPLDV-- 119 (309)
T ss_pred cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc--C---CHHHHHH-HHHHHHHhCCCEEEECCCc--CCCCCH--
Confidence 4445555556666677777777665 4888876531 1 2334444 4567789999999998632 111110
Q ss_pred cCCCCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442 93 NRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR 133 (282)
Q Consensus 93 ~~~i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~ 133 (282)
+ --++++.++++..+++||+ + .|--.+++.+.++.+
T Consensus 120 -~----~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 120 -D----TAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred -H----HHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 0 1156666776643257775 2 343346777777765
No 360
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=87.14 E-value=0.83 Score=41.76 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCcc-----HHHHHHHHhc-CCC-ceEEEccCCCCHHHHHHHHH-c-CC
Q 023442 67 VSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLK-----YEYYYALLRD-FPD-LTFTLNGGINTVDEVNAALR-K-GA 136 (282)
Q Consensus 67 ~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~-----~~~i~~l~~~-~~~-ipVi~nGdI~s~eda~~~l~-~-g~ 136 (282)
.+.++|+|.|.+| |-|. .|..++.. ...+. .+.+.+.+++ .++ |-++-.|-|.+++|++.+++ + ||
T Consensus 165 ~M~~AGaDiiv~H~GlT~--gG~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 165 AMAEAGADIIVAHMGLTT--GGSIGAKT--ALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHT-SEEEEE-SS--------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHcCCCEEEecCCccC--CCCcCccc--cCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999 4442 23222221 11111 1112233333 244 45566778999999999998 5 59
Q ss_pred CEEEecHH
Q 023442 137 HHVMVGRA 144 (282)
Q Consensus 137 DgVmIGRg 144 (282)
+|..-|..
T Consensus 241 ~Gf~G~Ss 248 (268)
T PF09370_consen 241 HGFIGASS 248 (268)
T ss_dssp EEEEESTT
T ss_pred CEEecccc
Confidence 98876643
No 361
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.99 E-value=14 Score=33.97 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEEecCCc--ccCCCCcCCcCCCCCccHHH
Q 023442 27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKA--LLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G-v~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~ 103 (282)
.+.++.+. ++..+.|+.+=+. |.+ .+++.+ +++.++++| +|.|.++.--. ...|.. ...-+..-++.
T Consensus 79 ~~~~~~~~-~~~~~~p~i~si~-g~~----~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~---~~~~~~~~~ei 148 (301)
T PRK07259 79 FIEEELPW-LEEFDTPIIANVA-GST----EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMA---FGTDPELAYEV 148 (301)
T ss_pred HHHHHHHH-HhccCCcEEEEec-cCC----HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccc---cccCHHHHHHH
Confidence 33344443 3344788888664 322 344444 456678999 99999953110 101111 10111122344
Q ss_pred HHHHHhcCCCceEEE--ccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 104 YYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 104 i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+..+.+. .++||+. +.++.+..++.+.++ .|+|+|.+
T Consensus 149 v~~vr~~-~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 149 VKAVKEV-VKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHh-cCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4455443 4788875 445555555555555 89999865
No 362
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=86.49 E-value=16 Score=34.01 Aligned_cols=104 Identities=6% Similarity=0.042 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
..+...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|.+|+-+ .-+
T Consensus 130 ~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R-a~aY~eAGAD~ifi~~~~-----------------~~~ 191 (294)
T TIGR02319 130 STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRR-SREYVAAGADCIFLEAML-----------------DVE 191 (294)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHH-HHHHHHhCCCEEEecCCC-----------------CHH
Confidence 4444444445555433 344555556321111235565555 345678999999998721 034
Q ss_pred HHHHHHhcCCCceE---EEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 103 YYYALLRDFPDLTF---TLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 103 ~i~~l~~~~~~ipV---i~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.++.++. +.|+ +..|+-.-.-.+.++.+.|++.|..|-.++
T Consensus 192 ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~ 237 (294)
T TIGR02319 192 EMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGW 237 (294)
T ss_pred HHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHH
Confidence 556666653 4555 333332222345555567999999885543
No 363
>PRK14565 triosephosphate isomerase; Provisional
Probab=86.48 E-value=1.4 Score=39.65 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
.+++|++.|+| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus 188 ~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl-~~~~f 227 (237)
T PRK14565 188 SKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL-DVDSF 227 (237)
T ss_pred CCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh-cHHHH
Confidence 46899999998 7888888887 8999999999998 55545
No 364
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=86.46 E-value=12 Score=35.75 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=40.9
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCC-CcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGI-SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 133 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~-~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~ 133 (282)
+.+++.|+|.|.|.-.|. .|++. .| .-+.++|+.+.++.+..+++|++.-|+=-.+++..+.++
T Consensus 178 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p----~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 178 DFVKKTKVDALAVAIGTSHGAYKFTRKP----TGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred HHHHHHCcCEEehhcccccCCcCCCCCC----ChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHH
Confidence 345688999999875552 34331 11 002367998888876543799999999777644444443
No 365
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=86.28 E-value=14 Score=32.98 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=31.7
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
++.|-.-||| +.+.+.++.+.|+|.+++|+++.+.+.
T Consensus 171 ~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 171 PIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 5778899999 689999999999999999999765554
No 366
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.14 E-value=4.2 Score=35.97 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=45.2
Q ss_pred HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
.+.|++.+-+++-... .| ..+++.+..-++++|++..||| +.+++.+.++.| +.+.+|.+.|.+
T Consensus 125 ~~~Ga~~vKlFPa~~~-gg-------------~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag-~v~~vggs~L~~ 188 (212)
T PRK05718 125 MELGLRTFKFFPAEAS-GG-------------VKMLKALAGPFPDVRFCPTGGI-SPANYRDYLALP-NVLCIGGSWMVP 188 (212)
T ss_pred HHCCCCEEEEccchhc-cC-------------HHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHhCC-CEEEEEChHhCC
Confidence 4678888877542110 11 3556666666789999999999 679999999977 455555566555
Q ss_pred Cc
Q 023442 149 PW 150 (282)
Q Consensus 149 P~ 150 (282)
+.
T Consensus 189 ~~ 190 (212)
T PRK05718 189 KD 190 (212)
T ss_pred cc
Confidence 44
No 367
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=85.98 E-value=2.6 Score=36.15 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
.+.++.++ .++|||+.|=|.+-||+.++++.|+-+|.-
T Consensus 135 vi~~i~~~-t~~piIAGGLi~t~Eev~~Al~aGA~avST 172 (181)
T COG1954 135 VIKEITEK-THIPIIAGGLIETEEEVREALKAGAVAVST 172 (181)
T ss_pred HHHHHHHh-cCCCEEeccccccHHHHHHHHHhCcEEEee
Confidence 34455554 689999999999999999999999888863
No 368
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.72 E-value=18 Score=33.50 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG 142 (282)
+.+++.|+|.|.|.-.|. .|.| .|.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~i~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 162 RFVEETGVDALAIAIGTAHGPYKG--------EPKLDFDRLAKIKEL-VNIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred HHHHHHCCCEEeeccCccccccCC--------CCcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 344688999999875552 3433 145679988888765 589999877654 4566777888888877777
Q ss_pred HHhh
Q 023442 143 RAAY 146 (282)
Q Consensus 143 Rgal 146 (282)
..+.
T Consensus 233 T~~~ 236 (284)
T PRK12857 233 TNIR 236 (284)
T ss_pred cHHH
Confidence 6653
No 369
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.61 E-value=4 Score=37.57 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=47.1
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEE
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHV 139 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgV 139 (282)
.+.+.+.|++.|.+-|-|......+..+ +-+.+...++.. .++|||++-+- +.+++.++.+ .|||+|
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v 98 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDE-------YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGI 98 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEE
Confidence 3445679999999988775433332211 122233333322 36899876554 6667666554 799999
Q ss_pred EecHHhhhCC
Q 023442 140 MVGRAAYQNP 149 (282)
Q Consensus 140 mIGRgal~nP 149 (282)
|+--..+..|
T Consensus 99 ~~~pP~y~~~ 108 (289)
T cd00951 99 LLLPPYLTEA 108 (289)
T ss_pred EECCCCCCCC
Confidence 9976666554
No 370
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=85.37 E-value=4.7 Score=35.95 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=37.0
Q ss_pred HHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 105 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 105 ~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++.+-.+ ++-+++--||+|++|+....+.|+.+|.+|..++..-+
T Consensus 228 skL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 228 SKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred HHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 44444333 56788999999999999999999999999999986544
No 371
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=85.34 E-value=4.2 Score=37.68 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-- 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~-- 133 (282)
.+.+.+. .+.+.+.|++.|.+-|-|......+..+ +.+.+...++.. .++|||++-+- +.+++.+..+
T Consensus 27 ~~~l~~l-i~~l~~~Gv~Gi~~~GstGE~~~Lt~eE-------r~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 27 EAAYREH-LEWLAPYGAAALFAAGGTGEFFSLTPDE-------YSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred HHHHHHH-HHHHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHH
Confidence 3444433 3455679999999988775443333221 122333333322 35898855443 6666665553
Q ss_pred --cCCCEEEecHHhhhCC
Q 023442 134 --KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 134 --~g~DgVmIGRgal~nP 149 (282)
.|+|+||+.-..+..|
T Consensus 98 ~~~Gadav~~~pP~y~~~ 115 (303)
T PRK03620 98 ERAGADGILLLPPYLTEA 115 (303)
T ss_pred HHhCCCEEEECCCCCCCC
Confidence 7999999975554443
No 372
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=85.32 E-value=12 Score=34.28 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=64.7
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-ccc-CCCCcCCcC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALL-NGISPAENR 94 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~-~G~~~ad~~ 94 (282)
.|+..|+|.+++. ++ ...++||-+|=-++ .+++|.+.. +..+-..|...+++=-|- +.+ ++. +
T Consensus 134 vGARNMQNF~LLk----e~-G~~~kPvLLKRg~~----aTieEwL~A-AEYI~s~GN~~vILCERGIRtfe~~T-----R 198 (286)
T COG2876 134 VGARNMQNFALLK----EV-GRQNKPVLLKRGLS----ATIEEWLNA-AEYILSHGNGNVILCERGIRTFEKAT-----R 198 (286)
T ss_pred hcccchhhhHHHH----Hh-cccCCCeEEecCcc----ccHHHHHHH-HHHHHhCCCCcEEEEecccccccccc-----c
Confidence 3777888887744 43 23489999994332 356666543 445557888888876442 111 111 0
Q ss_pred CCCCccHHHHHHHHhcCCCceEEEccC----CCCHH--HHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFTLNGG----INTVD--EVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi~nGd----I~s~e--da~~~l~~g~DgVmIGRgal~nP~i 151 (282)
--++...+..+++ .+++|||.+=. =.++- -+..++..|+||+|+= .-.||.-
T Consensus 199 --ntLDi~aV~~~kq-~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~~ 256 (286)
T COG2876 199 --NTLDISAVPILKQ-ETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPEK 256 (286)
T ss_pred --ceechHHHHHHHh-hcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCccc
Confidence 0123455544444 57899997421 11221 1223334799999995 4556664
No 373
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=85.26 E-value=18 Score=33.69 Aligned_cols=106 Identities=7% Similarity=0.059 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442 22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
+-.++...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|.+|+-+.
T Consensus 129 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R-a~aY~eAGAD~ifi~~~~~----------------- 190 (292)
T PRK11320 129 IVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIER-AQAYVEAGADMIFPEAMTE----------------- 190 (292)
T ss_pred ccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHH-HHHHHHcCCCEEEecCCCC-----------------
Confidence 445555555556665543 555666556421111235565555 4567789999999998321
Q ss_pred HHHHHHHHhcCCCceEEE---ccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 101 YEYYYALLRDFPDLTFTL---NGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~---nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+.+.++.+.. +.|+.+ +|+-.-.-+++++.+.|+.-|..|-.++
T Consensus 191 ~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 191 LEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 35566666653 567733 3332211234455557999999995543
No 374
>PLN02561 triosephosphate isomerase
Probab=84.93 E-value=2 Score=39.09 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442 112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 154 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~ 154 (282)
.+++|++.|+| +++.+.+++. .++||+.||++.|. |. |..
T Consensus 203 ~~i~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~ 243 (253)
T PLN02561 203 ATTRIIYGGSV-TGANCKELAAQPDVDGFLVGGASLK-PE-FID 243 (253)
T ss_pred ccceEEEeCCc-CHHHHHHHhcCCCCCeEEEehHhhH-HH-HHH
Confidence 36899999999 5555555665 89999999999998 65 643
No 375
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.85 E-value=14 Score=34.37 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-+..-..+.=.++++.+++.+ .+||.+.+- -. +..+.++ +++.+++.|+|++-+.+.- |...+.
T Consensus 49 GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g--~~---~t~eai~-lak~a~~~Gad~il~v~Py--Y~k~~~----- 115 (299)
T COG0329 49 GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG--SN---STAEAIE-LAKHAEKLGADGILVVPPY--YNKPSQ----- 115 (299)
T ss_pred ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC--CC---cHHHHHH-HHHHHHhcCCCEEEEeCCC--CcCCCh-----
Confidence 4444446666677888888877 478877542 22 2334444 5677899999999998642 111100
Q ss_pred CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR 133 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~ 133 (282)
.--++++.++++.. ++||| +| |-=.+++.+.++-+
T Consensus 116 --~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 116 --EGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred --HHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 01155666776654 78764 56 66678888877765
No 376
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.66 E-value=14 Score=32.25 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCccEEEEecCC-CC-C---CCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 29 GEAMSVIAANTNVPVSVKCRIG-VD-D---HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 29 ~eiv~~v~~~~~ipvsvKiR~G-~d-~---~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
.+.++++++.+++||...+|-- ++ . ....+ ++ +.+.++|+|.|.+-.+... ++.. ....+.
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~----~v-~~a~~aGad~I~~d~~~~~----~p~~-----~~~~~~ 110 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLK----EV-DALAAAGADIIALDATLRP----RPDG-----ETLAEL 110 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHH----HH-HHHHHcCCCEEEEeCCCCC----CCCC-----CCHHHH
Confidence 4567777877899986444411 00 0 01111 22 3456899998887654210 0000 001233
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+..+.+. +.+|++. ++.|.+++..+.+.|+|.+.++
T Consensus 111 i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 111 VKRIKEY-PGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred HHHHHhC-CCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 3344332 5788775 6789999988888999999774
No 377
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=84.58 E-value=4.1 Score=42.36 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=58.3
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++..++.|+++|.|..-..+++|. ++.+.++.+. +++||+-.==|.++-++.+....|||+|.+==
T Consensus 75 ~a~~y~~~GA~aiSVlTe~~~F~Gs------------~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~ 141 (695)
T PRK13802 75 LAREYEQGGASAISVLTEGRRFLGS------------LDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIV 141 (695)
T ss_pred HHHHHHHcCCcEEEEecCcCcCCCC------------HHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhH
Confidence 4566789999999999877666775 6777666654 68999877669999999999999999998776
Q ss_pred HhhhCCc
Q 023442 144 AAYQNPW 150 (282)
Q Consensus 144 gal~nP~ 150 (282)
++|.+-.
T Consensus 142 ~~L~~~~ 148 (695)
T PRK13802 142 AALDDAQ 148 (695)
T ss_pred hhcCHHH
Confidence 6665433
No 378
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.55 E-value=14 Score=35.22 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=39.9
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHH
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 132 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l 132 (282)
+.+++.|+|.|.|.-.|. .|++... ...+.++|+.+.++.+..+++|++.-|+=-.++|....+
T Consensus 180 ~Fv~~TgvD~LAvaiGT~HG~Yk~~~~---p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~ 245 (347)
T PRK09196 180 DFVKKTQVDALAIAIGTSHGAYKFTRK---PTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDII 245 (347)
T ss_pred HHHHHhCcCeEhhhhccccCCCCCCCC---CChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHH
Confidence 345689999998864442 3333100 011237899998887764479999999866655444333
No 379
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=84.51 E-value=20 Score=33.12 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=63.5
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 96 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i 96 (282)
.|+.++++.++ ++++.+ ++.||.+|=-.+. +.+++...+ ..+.+.|...|.+--|--.+ |.. +.
T Consensus 112 IgAr~~rntdL----L~a~~~-t~kpV~lKrGqf~----s~~e~~~aa-e~i~~~Gn~~vilcERG~~f-gy~----~~- 175 (281)
T PRK12457 112 VPAFLARQTDL----VVAIAK-TGKPVNIKKPQFM----SPTQMKHVV-SKCREAGNDRVILCERGSSF-GYD----NL- 175 (281)
T ss_pred eCchhhchHHH----HHHHhc-cCCeEEecCCCcC----CHHHHHHHH-HHHHHcCCCeEEEEeCCCCC-CCC----Cc-
Confidence 47888888766 444433 4899999943222 234555444 44567899988887663222 221 11
Q ss_pred CCccHHHHHHHHhcCCCceEEEc---------------cCCCC--HHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s--~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++...+..+++..+++|||.- ||.+. +.-++..+..|+||+||= .--||.
T Consensus 176 -~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iE--vHpdP~ 243 (281)
T PRK12457 176 -VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLE--AHPDPD 243 (281)
T ss_pred -ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE--ecCCcc
Confidence 1223444444443367899852 33221 122333444899999996 333554
No 380
>PLN02417 dihydrodipicolinate synthase
Probab=84.50 E-value=5.2 Score=36.64 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=43.9
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH----cCCCEE
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR----KGAHHV 139 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~----~g~DgV 139 (282)
+.+.+.|++.|.+-|-|....-.+... +.+.+...++.. .++||++ .|.. |.+++.++.+ .|+|+|
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~E-------r~~~~~~~~~~~~~~~pvi~gv~~~-~t~~~i~~a~~a~~~Gadav 100 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGGKIKVIGNTGSN-STREAIHATEQGFAVGMHAA 100 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEEECCCc-cHHHHHHHHHHHHHcCCCEE
Confidence 344578999999999775432222111 122232333322 2588864 5554 4455544432 799999
Q ss_pred EecHHhhhCC
Q 023442 140 MVGRAAYQNP 149 (282)
Q Consensus 140 mIGRgal~nP 149 (282)
|+.-..+..|
T Consensus 101 ~~~~P~y~~~ 110 (280)
T PLN02417 101 LHINPYYGKT 110 (280)
T ss_pred EEcCCccCCC
Confidence 9987666555
No 381
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=84.50 E-value=12 Score=35.63 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCc--c---c-CCCC-cCCcC--CCCCccHHHHHHHHhcC--CCceEEEccCCC-CHH
Q 023442 59 QLCDFIYKVSSLSPTRHFIIHSRKA--L---L-NGIS-PAENR--TIPPLKYEYYYALLRDF--PDLTFTLNGGIN-TVD 126 (282)
Q Consensus 59 e~~~~v~~~le~~Gv~~i~VH~Rt~--~---~-~G~~-~ad~~--~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~-s~e 126 (282)
+++...+++..+.|+|.|-+---+. . . -|.. ...+. .+.. .-+.++.+++.. -.+||+..||=. +.+
T Consensus 217 d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~-~~~~~~~~V~ac~ag~vpVviAGG~k~~~~ 295 (348)
T PRK09250 217 DLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDH-PIDLVRYQVANCYMGRRGLINSGGASKGED 295 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccc-hHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence 4566778899999999987752210 0 0 0000 00000 0000 022344444432 158988888765 444
Q ss_pred HH----HHH---HHcCCCEEEecHHhhhCCc
Q 023442 127 EV----NAA---LRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 127 da----~~~---l~~g~DgVmIGRgal~nP~ 150 (282)
++ +.+ ++.|+.||++||-+...|.
T Consensus 296 e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 296 DLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 44 445 5569999999998766665
No 382
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=84.16 E-value=4.7 Score=37.35 Aligned_cols=75 Identities=16% Similarity=0.359 Sum_probs=51.7
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIG 142 (282)
+.+++.|+|.|.|.-.|. .|++. ..|.++++.+.++.+..+++|++.-|+=..+ ++++++++.|+-=|=|+
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~------~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 162 EFVEETGVDALAVAIGTAHGMYKGG------KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp HHHHHHTTSEEEE-SSSBSSSBSSS------SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEES
T ss_pred HHHHHhCCCEEEEecCccccccCCC------CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEe
Confidence 345789999999976553 34431 1255678988888775338999998886655 48888888888888888
Q ss_pred HHhh
Q 023442 143 RAAY 146 (282)
Q Consensus 143 Rgal 146 (282)
..+.
T Consensus 236 T~~~ 239 (287)
T PF01116_consen 236 TELR 239 (287)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7664
No 383
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=84.16 E-value=2 Score=41.41 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+.|+.+..+.+. .++|||. .+|.|.+|++.+++.|||+|.++
T Consensus 230 ~~ltW~di~~lr~~-~~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 230 PSISWKDLEWIRDF-WDGPMVI-KGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred CCCCHHHHHHHHHh-CCCCEEE-EecCCHHHHHHHHhCCCCEEEEC
Confidence 34578888888764 5888865 56799999999999999999875
No 384
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=84.10 E-value=5.1 Score=37.30 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-- 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~-- 133 (282)
.+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+ +-+.+...++.. .++|||++=+=.+.+++.++.+
T Consensus 28 ~~~l~~lv-~~li~~Gv~Gi~v~GstGE~~~Lt~eE-------r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 28 LDETARLV-ERLIAAGVDGILTMGTFGECATLTWEE-------KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHH-HHHHHcCCCEEEECcccccchhCCHHH-------HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHH
Confidence 33333333 345579999999998775433332211 122233333322 2588875444345555555543
Q ss_pred --cCCCEEEecHHhhhCC
Q 023442 134 --KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 134 --~g~DgVmIGRgal~nP 149 (282)
.|+|+||+--..+..|
T Consensus 100 ~~~Gad~vlv~~P~y~~~ 117 (309)
T cd00952 100 LDLGADGTMLGRPMWLPL 117 (309)
T ss_pred HHhCCCEEEECCCcCCCC
Confidence 7999999997765555
No 385
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.05 E-value=28 Score=30.39 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+++.+.++++.+++..+.|+.+.+...... ....+. .+.+.++|++.|.+|.-. + .+.
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~-~~~~~~----~~~~~~~g~d~v~l~~~~-------~----------~~~ 94 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSN-PDFEAL----LEVALEEGVPVVSFSFGP-------P----------AEV 94 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCC-cCHHHH----HHHHHhCCCCEEEEcCCC-------C----------HHH
Confidence 467777888888876556766665542210 122332 234568999999998631 0 223
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI 141 (282)
+.++.+ .+++++.. +.+.++++++.+.|+|++.+
T Consensus 95 ~~~~~~--~~i~~i~~--v~~~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 95 VERLKA--AGIKVIPT--VTSVEEARKAEAAGADALVA 128 (236)
T ss_pred HHHHHH--cCCEEEEe--CCCHHHHHHHHHcCCCEEEE
Confidence 333333 36777654 67888888877789999875
No 386
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.05 E-value=4.5 Score=37.56 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH-
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR- 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~- 133 (282)
.+.+.+ +.+.+.+.|++.|.+-|-|+...-.+..+ +.+.+...++.. ..+|||+ .|...|.+.++....
T Consensus 24 ~~a~~~-lv~~li~~Gv~gi~~~GttGE~~~Ls~eE-------r~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a 95 (299)
T COG0329 24 EEALRR-LVEFLIAAGVDGLVVLGTTGESPTLTLEE-------RKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA 95 (299)
T ss_pred HHHHHH-HHHHHHHcCCCEEEECCCCccchhcCHHH-------HHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH
Confidence 334333 34456689999999999775433332211 112222222221 2588875 666555544443332
Q ss_pred --cCCCEEEecHHhhhCCc
Q 023442 134 --KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 134 --~g~DgVmIGRgal~nP~ 150 (282)
.|+||+|+--..+..|.
T Consensus 96 ~~~Gad~il~v~PyY~k~~ 114 (299)
T COG0329 96 EKLGADGILVVPPYYNKPS 114 (299)
T ss_pred HhcCCCEEEEeCCCCcCCC
Confidence 79999999988777775
No 387
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.83 E-value=1.4 Score=39.97 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
.++||.+.|+|..-.+.+.+.+.++||+.||++.+.-..
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~ 239 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD 239 (251)
T ss_pred CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchh
Confidence 489999999997777776666699999999998887655
No 388
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=83.67 E-value=7.1 Score=36.57 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=44.1
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cC
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 135 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g 135 (282)
+.+++.|+|+|.|.-.|. .|+..+ -|.++|+.+.++.+. .++|++.-|+=-.+++..+-+. +|
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~------~p~L~f~~L~~I~~~-~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 162 QFVKESQVDYLAPAIGTSHGAFKFKG------EPKLDFERLQEVKRL-TNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred HHHHhhCCCEEEEccCccccccCCCC------CCccCHHHHHHHHHH-hCCCEEEeCCCCCchHHhhhhhhhc
Confidence 345689999999875552 333100 256789999888765 5899999999888887555554 54
No 389
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=83.50 E-value=14 Score=34.08 Aligned_cols=104 Identities=11% Similarity=0.122 Sum_probs=57.7
Q ss_pred CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442 15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 92 (282)
Q Consensus 15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad 92 (282)
|..|-...-..+.-.++++.+.+.+ ++||.+-+- -. +..+.++ .++.+++.|+|++.+..-. |...+..
T Consensus 43 GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~---~t~~~i~-la~~a~~~Gad~v~v~~P~--y~~~~~~- 113 (290)
T TIGR00683 43 GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG--SV---NLKEAVE-LGKYATELGYDCLSAVTPF--YYKFSFP- 113 (290)
T ss_pred CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CC---CHHHHHH-HHHHHHHhCCCEEEEeCCc--CCCCCHH-
Confidence 3334334445555567777776655 478877542 11 2334444 4567789999999997532 1111110
Q ss_pred cCCCCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442 93 NRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR 133 (282)
Q Consensus 93 ~~~i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~ 133 (282)
--++++.++++..+++||+ . .|--.+++.+.++.+
T Consensus 114 ------~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 114 ------EIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred ------HHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 0145556665543356764 3 355557777776665
No 390
>PTZ00333 triosephosphate isomerase; Provisional
Probab=83.44 E-value=1.5 Score=39.89 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=30.8
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 153 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~ 153 (282)
+++|++.|+| +++.+.+++. .++||+.||++.+. +. |.
T Consensus 207 ~~~ILYGGSV-~~~N~~~l~~~~~vDG~LvG~asl~-~~-f~ 245 (255)
T PTZ00333 207 ATRIIYGGSV-NEKNCKELIKQPDIDGFLVGGASLK-PD-FV 245 (255)
T ss_pred cceEEEcCCC-CHHHHHHHhcCCCCCEEEEehHhhh-hh-HH
Confidence 6899999999 5566666665 89999999999997 65 53
No 391
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.35 E-value=7.3 Score=35.30 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHVM 140 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgVm 140 (282)
+.+.+.|++.|.+-|-|+.....+..+ +-+.+...++.. .++||++.=+=.|.+++.++.+ .|+|+||
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~ 97 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEE-------RKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVL 97 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHH-------HHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEE
Confidence 345578999999988775433332111 122233333322 2688864433345554444432 7999999
Q ss_pred ecHHhhhCC
Q 023442 141 VGRAAYQNP 149 (282)
Q Consensus 141 IGRgal~nP 149 (282)
+.-..+..|
T Consensus 98 v~pP~y~~~ 106 (281)
T cd00408 98 VVPPYYNKP 106 (281)
T ss_pred ECCCcCCCC
Confidence 986665444
No 392
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=83.27 E-value=9 Score=38.59 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=35.7
Q ss_pred HhcCCCceEEEccCCCCHHHHHHHHH------cC-----CCEEEecHHhhhCCc
Q 023442 108 LRDFPDLTFTLNGGINTVDEVNAALR------KG-----AHHVMVGRAAYQNPW 150 (282)
Q Consensus 108 ~~~~~~ipVi~nGdI~s~eda~~~l~------~g-----~DgVmIGRgal~nP~ 150 (282)
+|...+|-++..|||-|++|+...+. .| .||+.+|.++|.--.
T Consensus 208 lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 208 LRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred HhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 35567899999999999999999885 22 899999999987543
No 393
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=83.23 E-value=7.4 Score=36.45 Aligned_cols=116 Identities=9% Similarity=0.128 Sum_probs=64.5
Q ss_pred cccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHh------CCCCEEEEecCCccc
Q 023442 18 GVSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL------SPTRHFIIHSRKALL 85 (282)
Q Consensus 18 Gs~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~------~Gv~~i~VH~Rt~~~ 85 (282)
-+.|++|-.. +.+.++.+++.. ..+.+.||-+-.+ +.++..+ .+ + +|+|.|-+---.
T Consensus 171 d~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~---tleea~e----a~-~~~~~~~agaDiImLDnm~--- 239 (308)
T PLN02716 171 DMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETR---TLEEVKE----VL-EYLSDTKTSLTRVMLDNMV--- 239 (308)
T ss_pred ceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEEC---CHHHHHH----HH-HhcccccCCCCEEEeCCCc---
Confidence 3456666542 235555555522 2334455554332 3444332 23 5 899999876531
Q ss_pred CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 86 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 86 ~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+|.+.+. .-+.+.+.++.. ...|+.++||| |.+.+.++..+|+|.+.+|.--..-|++
T Consensus 240 --~~~~~~~~----~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~~~ 299 (308)
T PLN02716 240 --VPLENGDV----DVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVKAL 299 (308)
T ss_pred --ccccccCC----CHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCCcc
Confidence 01111000 123343433321 25789999999 8999999999999999999533334543
No 394
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=82.87 E-value=1.9 Score=39.11 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=29.6
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
+++|++.|+| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus 203 ~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f 241 (250)
T PRK00042 203 KVRILYGGSV-KPDNAAELMAQPDIDGALVGGASL-KAEDF 241 (250)
T ss_pred CceEEEcCCC-CHHHHHHHhcCCCCCEEEEeeeee-chHHH
Confidence 5899999999 5555555555 9999999999988 55544
No 395
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.84 E-value=5.6 Score=36.66 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=66.5
Q ss_pred ccccccCCHH--HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 17 FGVSLMLDPK--FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 17 yGs~Ll~~p~--~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
+-+.|++|-. .+..|-++|+.+- ..|.+.||=+-. ++++++.+ . -++|+|-|-+.--+.
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv---esle~~~e----A-l~agaDiImLDNm~~---------- 219 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV---ESLEEAEE----A-LEAGADIIMLDNMSP---------- 219 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc---CCHHHHHH----H-HHcCCCEEEecCCCH----------
Confidence 3456777654 3333444443321 356777775433 34555332 2 379999886654321
Q ss_pred CCCCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 94 RTIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 94 ~~i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+.+++.++. ...+-+-++|+| |++.+..+..+|+|.+.+|.--..-|++
T Consensus 220 --------e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 220 --------EELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred --------HHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 222222221 235667899999 8999999999999999999776777765
No 396
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=82.47 E-value=17 Score=29.89 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=52.7
Q ss_pred HHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 023442 31 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 110 (282)
Q Consensus 31 iv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~ 110 (282)
.+..+++..++|+.+.+...-. ... ....++.+.++|+|.|.+|+-.... +....+.+.++.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~ 111 (200)
T cd04722 48 VLKEVAAETDLPLGVQLAINDA--AAA---VDIAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREA 111 (200)
T ss_pred HHHHHHhhcCCcEEEEEccCCc--hhh---hhHHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHh
Confidence 3555555667888887653211 111 1112345678999999999743110 00013445555554
Q ss_pred CCCceEEEccCC-CCHHHHHHHHHcCCCEEEecHH
Q 023442 111 FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 111 ~~~ipVi~nGdI-~s~eda~~~l~~g~DgVmIGRg 144 (282)
++++||+.--.. ...+++ .+.+.|+|.|++...
T Consensus 112 ~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~~~~ 145 (200)
T cd04722 112 VPDVKVVVKLSPTGELAAA-AAEEAGVDEVGLGNG 145 (200)
T ss_pred cCCceEEEEECCCCccchh-hHHHcCCCEEEEcCC
Confidence 446777654332 222222 134489999998754
No 397
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=82.30 E-value=20 Score=34.89 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=32.4
Q ss_pred CCCccHHHHHHHHhcCC--CceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442 96 IPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~--~ipVi~nGdI~s~eda~~~l~-~g~DgVm 140 (282)
+++-+++...++.+... ++||.+.=.+.|..++.++++ ..+|.+.
T Consensus 275 ~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~ 322 (415)
T cd03324 275 TSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQ 322 (415)
T ss_pred CCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEE
Confidence 34445666667765432 599977778999999999998 5677764
No 398
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=82.17 E-value=15 Score=34.77 Aligned_cols=44 Identities=5% Similarity=-0.099 Sum_probs=31.7
Q ss_pred CCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442 97 PPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~-~g~DgVm 140 (282)
++-+++..+++.+.. .++||.+.=.+.|..|+.++++ ..+|.|.
T Consensus 218 ~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~ 263 (352)
T cd03328 218 SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQ 263 (352)
T ss_pred ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEe
Confidence 333456666666542 4699988777899999999999 5577664
No 399
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=81.99 E-value=35 Score=30.53 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=32.0
Q ss_pred CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
++.|-.-||| +.+.+.++.+.|+|.+.+|+++.+++.
T Consensus 179 ~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 179 EKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred CceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 5678899999 688999999999999999998876665
No 400
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=81.66 E-value=1.9 Score=34.86 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.8
Q ss_pred ceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442 114 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148 (282)
Q Consensus 114 ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n 148 (282)
|+|-.+|.| +++-+.+++..|+|||+++=-=+++
T Consensus 33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 33 IRVMCSGRV-NPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred EEeeccCcc-CHHHHHHHHHcCCCeEEEecccccc
Confidence 678899997 8899999999999999999544555
No 401
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=81.59 E-value=19 Score=30.60 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=53.4
Q ss_pred HHHHHHHhhc-CCccEEE--EecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442 29 GEAMSVIAAN-TNVPVSV--KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 105 (282)
Q Consensus 29 ~eiv~~v~~~-~~ipvsv--KiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~ 105 (282)
.+.++.+++. .++|+.+ |+.. . .+ . .++.+.++|++.+++|+.+.. + ..+.+.
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~---~-~~--~----~~~~~~~aGad~i~~h~~~~~-------~-------~~~~~i 96 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTAD---A-GA--L----EAEMAFKAGADIVTVLGAAPL-------S-------TIKKAV 96 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecc---c-cH--H----HHHHHHhcCCCEEEEEeeCCH-------H-------HHHHHH
Confidence 4567777764 3677766 4331 1 11 1 123456899999999985310 0 012222
Q ss_pred HHHhcCCCceEEEc-cCCCCHHHHHHHHHcCCCEEEec
Q 023442 106 ALLRDFPDLTFTLN-GGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 106 ~l~~~~~~ipVi~n-GdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.+++. +++++.. =+..|++++.+++..|+|.|.++
T Consensus 97 ~~~~~~-g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 97 KAAKKY-GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHc-CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 333432 6666653 56678999988666899999885
No 402
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=81.54 E-value=2.3 Score=40.36 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm 140 (282)
+.+.+++.|+..|-+..-.+. |.+ +. -+.+.+ +++++.++||||++-|--+++..++.++ |.||+..
T Consensus 446 LtrAcEalGAGEiLLNCiD~D--Gsn-~G------yDieLv-~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 446 LTRACEALGAGEILLNCIDCD--GSN-KG------YDIELV-KLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred HHHHHHHhCcchheeeeeccC--CCC-CC------cchhHH-HHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 466788999988887754432 221 11 124555 4556667999999999999999999998 9999643
No 403
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=81.52 E-value=32 Score=31.93 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=50.7
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHHcCCCEEEec
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~~g~DgVmIG 142 (282)
+.+++.|+|+|.|.-.|. .|.+ -|.++|+.+.++.+. .++|++.-|+=-. .++++++.+.|+.=|=|+
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~Y~~--------~p~Ldfd~l~~I~~~-~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 162 RFVELTGVDSLAVAIGTAHGLYSK--------TPKIDFQRLAEIREV-VDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred HHHHHhCCCEEEeccCcccCCCCC--------CCcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 345688999999875552 3332 256789999888775 5899998777443 566777777888877777
Q ss_pred HHh
Q 023442 143 RAA 145 (282)
Q Consensus 143 Rga 145 (282)
..+
T Consensus 233 T~l 235 (286)
T PRK12738 233 TEL 235 (286)
T ss_pred cHH
Confidence 655
No 404
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.29 E-value=5.8 Score=30.78 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHhCCCCEEEEecCCc-ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEEecH
Q 023442 67 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR 143 (282)
Q Consensus 67 ~le~~Gv~~i~VH~Rt~-~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGR 143 (282)
.+.+...+.|.++.... .... ..+.+..+++..++++|+..|-..|... +.+++ .|+|.|++|-
T Consensus 46 ~~~~~~pd~V~iS~~~~~~~~~------------~~~l~~~~k~~~p~~~iv~GG~~~t~~~-~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 46 ALRAERPDVVGISVSMTPNLPE------------AKRLARAIKERNPNIPIVVGGPHATADP-EEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHTTCSEEEEEESSSTHHHH------------HHHHHHHHHTTCTTSEEEEEESSSGHHH-HHHHHHHHTSEEEEEET
T ss_pred HHhcCCCcEEEEEccCcCcHHH------------HHHHHHHHHhcCCCCEEEEECCchhcCh-HHHhccCcCcceecCCC
Confidence 44567899999987421 1100 0223334444457888888777755443 33443 7999999997
Q ss_pred H
Q 023442 144 A 144 (282)
Q Consensus 144 g 144 (282)
|
T Consensus 113 g 113 (121)
T PF02310_consen 113 G 113 (121)
T ss_dssp T
T ss_pred h
Confidence 6
No 405
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=81.17 E-value=7.9 Score=35.57 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEE
Q 023442 66 KVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHV 139 (282)
Q Consensus 66 ~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgV 139 (282)
+.+.+ .|++.|.+-|-|......+... +.+.+...++.. .++|||++=+-.|.+++.++.+ .|||+|
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEAFLLSTEE-------KKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAI 103 (293)
T ss_pred HHHHhcCCCCEEEECCCccccccCCHHH-------HHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34557 9999999999775433332111 122233333322 2588876444355666655443 799999
Q ss_pred EecHHhhhCC
Q 023442 140 MVGRAAYQNP 149 (282)
Q Consensus 140 mIGRgal~nP 149 (282)
|+--..+..|
T Consensus 104 ~v~~P~y~~~ 113 (293)
T PRK04147 104 SAVTPFYYPF 113 (293)
T ss_pred EEeCCcCCCC
Confidence 9997777666
No 406
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=80.70 E-value=20 Score=33.72 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=33.0
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+++-+++...++.+. .++||.+.=.+.+..++.++++ ..+|.|.+
T Consensus 206 ~~~~d~~~~~~l~~~-~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~ 251 (341)
T cd03327 206 LIPDDIEGYAELKKA-TGIPISTGEHEYTVYGFKRLLEGRAVDILQP 251 (341)
T ss_pred CCccCHHHHHHHHhc-CCCCeEeccCccCHHHHHHHHHcCCCCEEec
Confidence 334456666666654 6899987777899999999998 66777654
No 407
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=80.57 E-value=9.4 Score=34.73 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH-
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR- 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~- 133 (282)
.+.+.+.+ +.+.+.|++.|.+-|-++.....+... +.+.+...++.. .++||+ +.|+- |.+++.++.+
T Consensus 20 ~~~~~~~i-~~l~~~Gv~gl~v~GstGE~~~lt~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~~~~a~~ 90 (284)
T cd00950 20 FDALERLI-EFQIENGTDGLVVCGTTGESPTLSDEE-------HEAVIEAVVEAVNGRVPVIAGTGSN-NTAEAIELTKR 90 (284)
T ss_pred HHHHHHHH-HHHHHcCCCEEEECCCCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEeccCCc-cHHHHHHHHHH
Confidence 33444433 345679999999998775433332211 122232333322 257774 56664 4555544443
Q ss_pred ---cCCCEEEecHHhhhCC
Q 023442 134 ---KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 134 ---~g~DgVmIGRgal~nP 149 (282)
.|+|+||+....+..|
T Consensus 91 a~~~G~d~v~~~~P~~~~~ 109 (284)
T cd00950 91 AEKAGADAALVVTPYYNKP 109 (284)
T ss_pred HHHcCCCEEEEcccccCCC
Confidence 7999999997765544
No 408
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=80.36 E-value=18 Score=33.32 Aligned_cols=109 Identities=8% Similarity=0.052 Sum_probs=59.3
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.=.++++.+.+.+ ++||.+-+- -. +..+.++ .++.+++.|+|++.+.+-. |...+ + ..
T Consensus 45 GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~--~~---~t~~ai~-~a~~A~~~Gad~v~v~pP~--y~~~~--~-~~ 113 (294)
T TIGR02313 45 GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG--AL---NHDETLE-LTKFAEEAGADAAMVIVPY--YNKPN--Q-EA 113 (294)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCcEEEECC--cc---hHHHHHH-HHHHHHHcCCCEEEEcCcc--CCCCC--H-HH
Confidence 4334444444456666665544 478876542 21 2334444 4566789999999998742 11111 1 00
Q ss_pred CCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH--cCCCEEEe
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR--KGAHHVMV 141 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~--~g~DgVmI 141 (282)
-++++.++++..+++||+ . .|--.+++.+.++.+ ..+-||=-
T Consensus 114 ----l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ 163 (294)
T TIGR02313 114 ----LYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKE 163 (294)
T ss_pred ----HHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEe
Confidence 145566666643367765 2 355557777777763 44444433
No 409
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=80.24 E-value=39 Score=31.93 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC---EEEEe
Q 023442 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR---HFIIH 79 (282)
Q Consensus 3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~---~i~VH 79 (282)
++|||.=|| ||.-+.+.+++..+.+ .++||.+++ |.. +++|+...+ ..+.+.|.. .+.+|
T Consensus 107 ~~~v~~~KI------aS~~~~n~pLL~~~A~-----~gkPvilSt--Gma---tl~Ei~~Av-~~i~~~G~~~~~i~llh 169 (329)
T TIGR03569 107 DLGVPRFKI------PSGEITNAPLLKKIAR-----FGKPVILST--GMA---TLEEIEAAV-GVLRDAGTPDSNITLLH 169 (329)
T ss_pred hcCCCEEEE------CcccccCHHHHHHHHh-----cCCcEEEEC--CCC---CHHHHHHHH-HHHHHcCCCcCcEEEEE
Confidence 567876544 5667889888766654 389999986 442 345554433 455678875 66778
Q ss_pred cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442 80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 137 (282)
Q Consensus 80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D 137 (282)
.-+ . +.++. ..+++..+..+.+.+ ++||..++=-....-...+...||+
T Consensus 170 C~s-~--YP~~~-----~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 170 CTT-E--YPAPF-----EDVNLNAMDTLKEAF-DLPVGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred ECC-C--CCCCc-----ccCCHHHHHHHHHHh-CCCEEECCCCccHHHHHHHHHcCCC
Confidence 632 1 22211 134567777777666 7999886432222222222236776
No 410
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=80.14 E-value=16 Score=33.37 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=57.8
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.=.++++.+.+.+ ++||.+-+ | . .+..+.++ .++.+++.|+|++.+..-. |...+ + +.
T Consensus 43 GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv--~--~-~s~~~~i~-~a~~a~~~Gad~v~v~pP~--y~~~~--~-~~ 111 (285)
T TIGR00674 43 GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT--G--S-NATEEAIS-LTKFAEDVGADGFLVVTPY--YNKPT--Q-EG 111 (285)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC--C--C-ccHHHHHH-HHHHHHHcCCCEEEEcCCc--CCCCC--H-HH
Confidence 4333334444455666555544 47887654 2 2 23445554 4667889999999998632 11111 1 00
Q ss_pred CCCccHHHHHHHHhcCCCceEE------EccCCCCHHHHHHHHH
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAALR 133 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi------~nGdI~s~eda~~~l~ 133 (282)
-++++.++++. .++||+ ..|--.|++.+.++.+
T Consensus 112 ----i~~~~~~i~~~-~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 112 ----LYQHFKAIAEE-VDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred ----HHHHHHHHHhc-CCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 14566677664 478875 2566668888888876
No 411
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=80.00 E-value=28 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 135 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g 135 (282)
+++-+++...++.+. .++||.+.=.+.|..++.++++.+
T Consensus 240 ~~~~d~~~~~~L~~~-~~iPIa~gEs~~~~~~~~~li~~~ 278 (385)
T cd03326 240 GDPLDYALQAELADH-YDGPIATGENLFSLQDARNLLRYG 278 (385)
T ss_pred CCccCHHHHHHHHhh-CCCCEEcCCCcCCHHHHHHHHHhC
Confidence 344456667777664 579998888899999999999844
No 412
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=79.79 E-value=24 Score=33.48 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
++-+++...++.+. ..+||.+.=.+.+..|+.++++ .++|.|.+
T Consensus 223 ~~~d~~~~~~l~~~-~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 223 PAENREALARLTRR-FNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CcccHHHHHHHHHh-CCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 33345666666554 5799998888999999999998 67887743
No 413
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=79.76 E-value=12 Score=35.40 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCC
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 137 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~D 137 (282)
+.+++.|+|.|.+.-.|. .|.+. | ...-|.++|+.+.++.+..+++|++.-|+=..+++..+.+. .|-|
T Consensus 171 ~Fv~~TgvD~LAvaiGt~HG~Y~~~-~--~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 171 DFVKKTGVDSLAISIGTSHGAYKFK-P--GQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred HHHHHhCCCEEeeccccccccccCC-C--CCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 345678999999875552 33321 0 00025678999988877644799999999877777766666 5544
No 414
>PRK14017 galactonate dehydratase; Provisional
Probab=79.51 E-value=22 Score=34.02 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
++-+++...++.+. ..+||.+.=.+.|++|+..+++ ..+|.|.+
T Consensus 213 ~~~d~~~~~~L~~~-~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~ 257 (382)
T PRK14017 213 LPENAEALPEIAAQ-TSIPIATGERLFSRWDFKRVLEAGGVDIIQP 257 (382)
T ss_pred CcCCHHHHHHHHhc-CCCCEEeCCccCCHHHHHHHHHcCCCCeEec
Confidence 33346666677654 5799988888999999999999 55777654
No 415
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.36 E-value=11 Score=34.44 Aligned_cols=74 Identities=16% Similarity=0.038 Sum_probs=43.3
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH----cCCCEEEe
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR----KGAHHVMV 141 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~----~g~DgVmI 141 (282)
+.+.+.|++.|.+-|-|+.....+..+ +.+.+...++.... -+.+.|... .+++.++.+ .|+|+||+
T Consensus 27 ~~l~~~Gv~Gl~~~GstGE~~~Lt~eE-------r~~l~~~~~~~~~~-vi~gvg~~~-~~~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 27 ENLISKGIDYVFVAGTTGLGPSLSFQE-------KLELLKAYSDITDK-VIFQVGSLN-LEESIELARAAKSFGIYAIAS 97 (279)
T ss_pred HHHHHcCCcEEEEcccCCCcccCCHHH-------HHHHHHHHHHHcCC-EEEEeCcCC-HHHHHHHHHHHHHcCCCEEEE
Confidence 345679999999998775433332111 12223333333223 356777754 444444432 79999999
Q ss_pred cHHhhhC
Q 023442 142 GRAAYQN 148 (282)
Q Consensus 142 GRgal~n 148 (282)
.-..+..
T Consensus 98 ~~P~y~~ 104 (279)
T cd00953 98 LPPYYFP 104 (279)
T ss_pred eCCcCCC
Confidence 9877655
No 416
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.29 E-value=20 Score=33.76 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=33.3
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
++-+++...++.+. ..+||.+.=.+.+++++..+++ ..+|.|.+-
T Consensus 212 ~~~d~~~~~~L~~~-~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d 257 (352)
T cd03325 212 LPENVEALAEIAAR-TTIPIATGERLFSRWDFKELLEDGAVDIIQPD 257 (352)
T ss_pred CccCHHHHHHHHHh-CCCCEEecccccCHHHHHHHHHhCCCCEEecC
Confidence 33356667777664 5799887777899999999998 568877553
No 417
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=79.19 E-value=9.2 Score=35.21 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHhCC-CCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH---cCCCEE
Q 023442 66 KVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR---KGAHHV 139 (282)
Q Consensus 66 ~~le~~G-v~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~---~g~DgV 139 (282)
+.+.+.| ++.|.+-|-|+.....+... +.+.+...++.. .++||++ .|+..+.+.++.+.. .|+|+|
T Consensus 28 ~~~i~~G~v~gi~~~GstGE~~~Lt~eE-------r~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v 100 (290)
T TIGR00683 28 RHNIDKMKVDGLYVGGSTGENFMLSTEE-------KKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCL 100 (290)
T ss_pred HHHHhCCCcCEEEECCcccccccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 3455789 99999999776433332211 122222233322 2588864 477655444443332 799999
Q ss_pred EecHHhhhCCc
Q 023442 140 MVGRAAYQNPW 150 (282)
Q Consensus 140 mIGRgal~nP~ 150 (282)
|+.-..+..|.
T Consensus 101 ~v~~P~y~~~~ 111 (290)
T TIGR00683 101 SAVTPFYYKFS 111 (290)
T ss_pred EEeCCcCCCCC
Confidence 99876655553
No 418
>PRK15452 putative protease; Provisional
Probab=79.02 E-value=40 Score=33.22 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442 26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 105 (282)
Q Consensus 26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~ 105 (282)
+.+.+.++-.++. ++.|.+.+-.-..+ +.+..+.+.+. .+.+.|+|+|.|.. +..+.
T Consensus 46 edl~eav~~ah~~-g~kvyvt~n~i~~e-~el~~~~~~l~-~l~~~gvDgvIV~d--------------------~G~l~ 102 (443)
T PRK15452 46 ENLALGINEAHAL-GKKFYVVVNIAPHN-AKLKTFIRDLE-PVIAMKPDALIMSD--------------------PGLIM 102 (443)
T ss_pred HHHHHHHHHHHHc-CCEEEEEecCcCCH-HHHHHHHHHHH-HHHhCCCCEEEEcC--------------------HHHHH
Confidence 4456666655543 66676665432222 23444444443 45689999999874 12222
Q ss_pred HHHhcCCCceEEEc--cCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 106 ALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 106 ~l~~~~~~ipVi~n--GdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
-+.+..|++||.++ =.|+|...+..+.+.|++.|.++|-+
T Consensus 103 ~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 103 MVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred HHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 22233467777664 35677777777766888888888765
No 419
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=78.98 E-value=11 Score=34.48 Aligned_cols=76 Identities=9% Similarity=0.002 Sum_probs=43.8
Q ss_pred HHHHhC-CCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH----cCCCE
Q 023442 66 KVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR----KGAHH 138 (282)
Q Consensus 66 ~~le~~-Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~----~g~Dg 138 (282)
+.+.+. |++.|.+-|-|......+... +.+.+...++.. .++|||+ .|.- |.+++.++.+ .|+|+
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~~~Lt~~E-------r~~~~~~~~~~~~~~~~viagv~~~-~~~~ai~~a~~a~~~Gad~ 99 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEGFLLSVEE-------RKQIAEIVAEAAKGKVTLIAHVGSL-NLKESQELAKHAEELGYDA 99 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCeEEeccCCC-CHHHHHHHHHHHHHcCCCE
Confidence 344567 999999999775432222111 122233333322 2588874 5654 4455544432 89999
Q ss_pred EEecHHhhhCC
Q 023442 139 VMVGRAAYQNP 149 (282)
Q Consensus 139 VmIGRgal~nP 149 (282)
||+.-..+..|
T Consensus 100 v~~~~P~y~~~ 110 (288)
T cd00954 100 ISAITPFYYKF 110 (288)
T ss_pred EEEeCCCCCCC
Confidence 99987766554
No 420
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=78.96 E-value=25 Score=32.12 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=57.2
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.=.++++.+.+.+ .+||.+-+- . .+..+.++ .++.++++|+|.+.+..-. |...+ + +
T Consensus 46 GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~----~-~~~~~ai~-~a~~a~~~Gad~v~~~~P~--y~~~~--~-~- 113 (288)
T cd00954 46 GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG----S-LNLKESQE-LAKHAEELGYDAISAITPF--YYKFS--F-E- 113 (288)
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC----C-CCHHHHHH-HHHHHHHcCCCEEEEeCCC--CCCCC--H-H-
Confidence 4333334554556666666554 467777542 1 12344444 4567789999999987532 11111 1 0
Q ss_pred CCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR 133 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~ 133 (282)
--++++.++++..+++||+ . .|--.+++.+.++.+
T Consensus 114 ---~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 114 ---EIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 0155666776653378875 2 355558888887776
No 421
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=78.62 E-value=4.1 Score=38.86 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+...|+.+..+++. .++|||.=|= .|.+|+.++.+.|+|+|.++
T Consensus 210 ~~~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp TT-SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT-SEEEEE
T ss_pred CCCCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcCCCEEEec
Confidence 34568888888776 5899988764 89999999999999999886
No 422
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=78.45 E-value=12 Score=34.16 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---
Q 023442 59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR--- 133 (282)
Q Consensus 59 e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~--- 133 (282)
.+.+.+. .+.+.|++.|.+-|-|+.....+... +.+.+...++.. .++||+ +.|.- |.+++.++.+
T Consensus 20 ~~~~~i~-~l~~~Gv~Gi~~~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~gv~~~-s~~~~i~~a~~a~ 90 (285)
T TIGR00674 20 ALEKLID-FQIENGTDAIVVVGTTGESPTLSHEE-------HKKVIEFVVDLVNGRVPVIAGTGSN-ATEEAISLTKFAE 90 (285)
T ss_pred HHHHHHH-HHHHcCCCEEEECccCcccccCCHHH-------HHHHHHHHHHHhCCCCeEEEeCCCc-cHHHHHHHHHHHH
Confidence 3333333 44579999999988765432222111 122233333322 358876 45554 4555444433
Q ss_pred -cCCCEEEecHHhhhCC
Q 023442 134 -KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 134 -~g~DgVmIGRgal~nP 149 (282)
.|+|+||+.-..+..|
T Consensus 91 ~~Gad~v~v~pP~y~~~ 107 (285)
T TIGR00674 91 DVGADGFLVVTPYYNKP 107 (285)
T ss_pred HcCCCEEEEcCCcCCCC
Confidence 7999999987666554
No 423
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=78.20 E-value=27 Score=33.73 Aligned_cols=94 Identities=6% Similarity=0.061 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+...+.|++|++.+ ++.+.+..--+|+. ++..+ +.+.+++.++.+|. + .+++-+++.
T Consensus 190 ~~~~~~v~avre~~G~~~~l~vDaN~~w~~----~~A~~-~~~~l~~~~l~~iE--------e--------P~~~~d~~~ 248 (404)
T PRK15072 190 RFVPKLFEAVRNKFGFDLHLLHDVHHRLTP----IEAAR-LGKSLEPYRLFWLE--------D--------PTPAENQEA 248 (404)
T ss_pred HHHHHHHHHHHhhhCCCceEEEECCCCCCH----HHHHH-HHHhccccCCcEEE--------C--------CCCccCHHH
Confidence 34467899999987 46677776656653 33333 34566777766663 0 011223566
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
..++.+. .++||.+.=.+.+..+++++++ ..+|.|.+
T Consensus 249 ~~~L~~~-~~iPIa~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 249 FRLIRQH-TTTPLAVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHhc-CCCCEEeCcCccCHHHHHHHHHcCCCCEEec
Confidence 6666654 5799988777899999999999 56787765
No 424
>PRK15492 triosephosphate isomerase; Provisional
Probab=78.04 E-value=2.7 Score=38.35 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=32.7
Q ss_pred CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
.+++|++.|+| +++.+.+++. ..+||+.|||+.+ +|.-|
T Consensus 211 ~~irILYGGSV-~~~N~~~l~~~~diDG~LvG~aSl-~~~~F 250 (260)
T PRK15492 211 DDIPVFYGGSV-NAENANELFGQPHIDGLFIGRSAW-DADKF 250 (260)
T ss_pred CceeEEEcCcc-CHHHHHHHhcCCCCCEEEeehhhc-CHHHH
Confidence 36899999998 8999999998 8899999998775 45544
No 425
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=77.78 E-value=1.8 Score=38.07 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
.+++|++.|+|..-.+.+-+.+.++||+.+|++.+
T Consensus 168 ~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl 202 (205)
T TIGR00419 168 ESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSL 202 (205)
T ss_pred CCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 46899999999555555444459999999999877
No 426
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=77.72 E-value=20 Score=32.54 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=63.3
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.-.++++.+.+.+ ++||.+-+. . .+..+.++ .++.++++|++.+.+..-. +...+ +
T Consensus 45 GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~-~~~~~~~~-~a~~a~~~G~d~v~~~~P~--~~~~~--~--- 111 (284)
T cd00950 45 GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----S-NNTAEAIE-LTKRAEKAGADAALVVTPY--YNKPS--Q--- 111 (284)
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC----C-ccHHHHHH-HHHHHHHcCCCEEEEcccc--cCCCC--H---
Confidence 4444445555567777776665 467776543 1 13345454 4567789999999988632 11111 1
Q ss_pred CCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH-cCCCEEE
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~-~g~DgVm 140 (282)
.--++++.++++. .++||+ . .|--.|++.+.++.+ ..+-|+=
T Consensus 112 --~~l~~~~~~ia~~-~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 112 --EGLYAHFKAIAEA-TDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred --HHHHHHHHHHHhc-CCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 0114566677664 578876 2 466678888888876 4444443
No 427
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=77.65 E-value=14 Score=33.68 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH----cCCCEE
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR----KGAHHV 139 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~----~g~DgV 139 (282)
+.+.+.|++.|.+-|.+......+... +.+.+...++. ..++||+ +.|+. |.+++.++.+ .|+|+|
T Consensus 29 ~~l~~~Gv~gl~~~GstGE~~~Lt~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~-st~~~i~~a~~a~~~Gad~v 100 (289)
T PF00701_consen 29 DFLIEAGVDGLVVLGSTGEFYSLTDEE-------RKELLEIVVEAAAGRVPVIAGVGAN-STEEAIELARHAQDAGADAV 100 (289)
T ss_dssp HHHHHTTSSEEEESSTTTTGGGS-HHH-------HHHHHHHHHHHHTTSSEEEEEEESS-SHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHH-------HHHHHHHHHHHccCceEEEecCcch-hHHHHHHHHHHHhhcCceEE
Confidence 445588999999998775433332211 12222222222 2368886 55665 4555444443 799999
Q ss_pred EecHHhhhCC
Q 023442 140 MVGRAAYQNP 149 (282)
Q Consensus 140 mIGRgal~nP 149 (282)
|+.-..+..|
T Consensus 101 ~v~~P~~~~~ 110 (289)
T PF00701_consen 101 LVIPPYYFKP 110 (289)
T ss_dssp EEEESTSSSC
T ss_pred EEeccccccc
Confidence 9986655544
No 428
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=77.54 E-value=24 Score=32.24 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=60.2
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.=.++++.+.+.+ ++||.+-+- . .+..+.++ .++.++++|+|.+.+..-. |...+. ..
T Consensus 46 GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~----~-~~~~~~i~-~a~~a~~~G~d~v~~~pP~--~~~~~~---~~ 114 (292)
T PRK03170 46 GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG----S-NSTAEAIE-LTKFAEKAGADGALVVTPY--YNKPTQ---EG 114 (292)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCCcEEeecC----C-chHHHHHH-HHHHHHHcCCCEEEECCCc--CCCCCH---HH
Confidence 4334444444456666666654 478776442 2 12345454 4567789999999997532 111111 00
Q ss_pred CCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH-cCCCEEE
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~-~g~DgVm 140 (282)
-++++.++++. .++||+ . .|--.|++.+.++.+ ..+-|+=
T Consensus 115 ----i~~~~~~ia~~-~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 115 ----LYQHFKAIAEA-TDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred ----HHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 14556666664 467875 3 465668888888865 3444443
No 429
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=77.23 E-value=13 Score=34.27 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=42.8
Q ss_pred HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH----cCCCE
Q 023442 65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR----KGAHH 138 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~----~g~Dg 138 (282)
.+.+.+.|++.|.+-|-|......+..+ +-+.+...++.. .++||++ .|. +.+++.+..+ .|+|+
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eE-------r~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAE-------YEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCE
Confidence 3345579999999988775433332211 112222233322 2578764 453 4666655543 79999
Q ss_pred EEecHHhhhCC
Q 023442 139 VMVGRAAYQNP 149 (282)
Q Consensus 139 VmIGRgal~nP 149 (282)
||+--..+..|
T Consensus 103 v~~~pP~y~~~ 113 (296)
T TIGR03249 103 YLLLPPYLING 113 (296)
T ss_pred EEECCCCCCCC
Confidence 99975544333
No 430
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=77.19 E-value=11 Score=33.87 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=76.1
Q ss_pred cCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 14 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 14 ~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
+.+ |=.+..+.+.+.++++.++++ ++.||+-|- . + .+. + +.+.+.|++.|.+|...-- .......
T Consensus 99 Teg-Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiD----P-d-~~q-i----~~A~~~GAd~VELhTG~Ya-~a~~~~~- 163 (234)
T cd00003 99 TEG-GLDVAGQAEKLKPIIERLKDA-GIRVSLFID----P-D-PEQ-I----EAAKEVGADRVELHTGPYA-NAYDKAE- 163 (234)
T ss_pred CCc-cchhhcCHHHHHHHHHHHHHC-CCEEEEEeC----C-C-HHH-H----HHHHHhCcCEEEEechhhh-cCCCchh-
Confidence 344 778889999999999999876 888988652 2 1 121 1 2346899999999965311 0000000
Q ss_pred CCCCCccHHHHH---HHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442 94 RTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 94 ~~i~~~~~~~i~---~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~ 150 (282)
. .--++.+. +.+.+ .++-|=+..|+ |++.+..+.+ .+..=|-||.+++.+--
T Consensus 164 --~-~~el~~i~~aa~~a~~-~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 164 --R-EAELERIAKAAKLARE-LGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred --H-HHHHHHHHHHHHHHHH-cCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 0 00022222 22222 36777777786 8999988888 88999999999987764
No 431
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=77.03 E-value=2 Score=38.76 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=28.0
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ 147 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~ 147 (282)
+++|++.|.| +++.+.+++. .++||+.||++.+.
T Consensus 202 ~~~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~asl~ 236 (244)
T PF00121_consen 202 NIRILYGGSV-NPENAAELLSQPDIDGVLVGGASLK 236 (244)
T ss_dssp HSEEEEESSE-STTTHHHHHTSTT-SEEEESGGGGS
T ss_pred ceeEEECCcC-CcccHHHHhcCCCCCEEEEchhhhc
Confidence 6899999998 6777777777 89999999988764
No 432
>PRK14566 triosephosphate isomerase; Provisional
Probab=76.99 E-value=3.1 Score=38.06 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=32.2
Q ss_pred CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442 113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if 152 (282)
+++|++.|.| +++.+.+++. ..+||+.||++.+ +|.-|
T Consensus 212 ~~rIlYGGSV-~~~N~~~l~~~~dIDG~LVGgASL-~~~~F 250 (260)
T PRK14566 212 NIRILYGGSV-TPSNAADLFAQPDVDGGLIGGASL-NSTEF 250 (260)
T ss_pred cceEEecCCC-CHhHHHHHhcCCCCCeEEechHhc-CHHHH
Confidence 5899999998 8999999998 8999999998776 45444
No 433
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=76.59 E-value=38 Score=31.99 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=31.7
Q ss_pred CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEE
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 139 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgV 139 (282)
++-.++...++.+. ..+||.+.=.+.+.+|+.++++ ..+|.+
T Consensus 224 ~~~~~~~~~~l~~~-~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 224 PRENLDGLARLRSR-NRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred CcccHHHHHHHHhh-cCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 33356666677664 5799887767889999999998 568877
No 434
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=76.37 E-value=31 Score=32.65 Aligned_cols=40 Identities=5% Similarity=0.080 Sum_probs=30.5
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm 140 (282)
+++...++.+. .++||.+.=.+.|++++..+++ ..+|.+.
T Consensus 202 d~~~~~~L~~~-~~~pia~gE~~~~~~~~~~~i~~~a~di~~ 242 (361)
T cd03322 202 NQEAFRLIRQH-TATPLAVGEVFNSIWDWQNLIQERLIDYIR 242 (361)
T ss_pred cHHHHHHHHhc-CCCCEEeccCCcCHHHHHHHHHhCCCCEEe
Confidence 46666677664 5799888777899999999998 5577664
No 435
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=76.21 E-value=29 Score=30.83 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=58.1
Q ss_pred ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCc-HHHHHHHHHHHHHhCCCCEEEEecCCcc-cCCCCcCCcCCCCC
Q 023442 21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPP 98 (282)
Q Consensus 21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~-~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-~~G~~~ad~~~i~~ 98 (282)
.--|.+-+.+| +++++.+++|+.==+--.+++.+- +.-+.+.+. .|.++|++-|.+.+-.+. ..|
T Consensus 48 vgiR~~gv~dI-kai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd-~L~~~Ga~IIA~DaT~R~RP~~----------- 114 (229)
T COG3010 48 VGIRIEGVEDI-KAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVD-ALAEAGADIIAFDATDRPRPDG----------- 114 (229)
T ss_pred ceEeecchhhH-HHHHhhCCCCeEEEEecCCCCCCceecccHHHHH-HHHHCCCcEEEeecccCCCCcc-----------
Confidence 33344445554 668888999984223233444320 011122233 345799999999874331 111
Q ss_pred ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
..+.+-+..+ .++ ..+=-|+.|++++..+.+.|+|.|
T Consensus 115 -~~~~~i~~~k-~~~--~l~MAD~St~ee~l~a~~~G~D~I 151 (229)
T COG3010 115 -DLEELIARIK-YPG--QLAMADCSTFEEGLNAHKLGFDII 151 (229)
T ss_pred -hHHHHHHHhh-cCC--cEEEeccCCHHHHHHHHHcCCcEE
Confidence 1333222222 233 456679999999999999999965
No 436
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=76.18 E-value=12 Score=34.58 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe-----cCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIH-----SRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 129 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH-----~Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~ 129 (282)
+.++++.+.++.++.|+..+.=. .||.- ++|.+- .-.++++.++++++ ++||+. ||.+.++++
T Consensus 32 ~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~-------eeGL~iL~~vk~~~-GlpvvT--eV~~~~~~~ 101 (281)
T PRK12457 32 TLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGL-------DEGLRIFEEVKARF-GVPVIT--DVHEVEQAA 101 (281)
T ss_pred HHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHH-CCceEE--EeCCHHHHH
Confidence 44556656556678999875432 47643 334320 11256677777764 899987 999999999
Q ss_pred HHHHcCCCEEEecHHhhhCCcc
Q 023442 130 AALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 130 ~~l~~g~DgVmIGRgal~nP~i 151 (282)
.+.+. ||.+-||-=++.|=.|
T Consensus 102 ~~ae~-vDilQIgAr~~rntdL 122 (281)
T PRK12457 102 PVAEV-ADVLQVPAFLARQTDL 122 (281)
T ss_pred HHhhh-CeEEeeCchhhchHHH
Confidence 99887 9999999666666555
No 437
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=75.90 E-value=14 Score=33.72 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH----cCCCEE
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR----KGAHHV 139 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~----~g~DgV 139 (282)
+.+.+.|++.|.+-|-+......+... +.+.+...++.. .++||+ +.|+- +.+++.+..+ .|+|+|
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~E-------r~~~~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a~~a~~~G~d~v 100 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEE-------HEELIRAVVEAVNGRVPVIAGTGSN-STAEAIELTKFAEKAGADGA 100 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHH-------HHHHHHHHHHHhCCCCcEEeecCCc-hHHHHHHHHHHHHHcCCCEE
Confidence 345679999999988765433332221 122232233322 247775 55654 4445444432 799999
Q ss_pred EecHHhhhCC
Q 023442 140 MVGRAAYQNP 149 (282)
Q Consensus 140 mIGRgal~nP 149 (282)
|+.-..+..|
T Consensus 101 ~~~pP~~~~~ 110 (292)
T PRK03170 101 LVVTPYYNKP 110 (292)
T ss_pred EECCCcCCCC
Confidence 9986665444
No 438
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=75.76 E-value=15 Score=33.24 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=76.2
Q ss_pred cCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 14 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 14 ~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
+.+ |=.+..+.+.+.++++.++++ ++.||+-| |. + .+. + +.+.+.|++.|.+|...--.. .+....
T Consensus 102 Teg-Gldv~~~~~~l~~~i~~L~~~-gIrVSLFi----dP-~-~~q-i----~~A~~~GAd~VELhTG~yA~a-~~~~~~ 167 (239)
T PRK05265 102 TEG-GLDVAGQFDKLKPAIARLKDA-GIRVSLFI----DP-D-PEQ-I----EAAAEVGADRIELHTGPYADA-KTEAEA 167 (239)
T ss_pred CCc-cchhhcCHHHHHHHHHHHHHC-CCEEEEEe----CC-C-HHH-H----HHHHHhCcCEEEEechhhhcC-CCcchH
Confidence 344 778888999999999999776 88898866 22 2 222 1 234689999999996531100 000000
Q ss_pred CCCCCccHHHHH---HHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442 94 RTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 94 ~~i~~~~~~~i~---~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~ 150 (282)
. .++.+. +.+.+ .++-|=+..|+ |++.+..+.. .+..=|-||.+++.+--
T Consensus 168 ~-----el~~~~~aa~~a~~-lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 168 A-----ELERIAKAAKLAAS-LGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred H-----HHHHHHHHHHHHHH-cCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 0 122222 22232 36778788887 8888888766 88999999999988765
No 439
>PRK06256 biotin synthase; Validated
Probab=75.63 E-value=39 Score=31.45 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc-CCCCCccHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN-RTIPPLKYE 102 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~-~~i~~~~~~ 102 (282)
..+...+.++.+++. ++++.+-+=+|.. ++.+++.+.+ ..+.+.|++.+.+|.-+. +.|. +..+ ...++ .+
T Consensus 185 t~~~~i~~i~~a~~~-Gi~v~~~~I~Glg--Et~ed~~~~~-~~l~~l~~~~v~i~~l~P-~pGT-~l~~~~~~~~--~e 256 (336)
T PRK06256 185 TYEDRIDTCEMVKAA-GIEPCSGGIIGMG--ESLEDRVEHA-FFLKELDADSIPINFLNP-IPGT-PLENHPELTP--LE 256 (336)
T ss_pred CHHHHHHHHHHHHHc-CCeeccCeEEeCC--CCHHHHHHHH-HHHHhCCCCEEeeccccc-CCCC-CCCCCCCCCH--HH
Confidence 344555556665553 6666555445553 3444555443 456788999988874321 1221 1111 11111 23
Q ss_pred HHH--HHHhc-CCCceEEEccCC-CCHHHHHHHHHcCCCEEEec
Q 023442 103 YYY--ALLRD-FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 103 ~i~--~l~~~-~~~ipVi~nGdI-~s~eda~~~l~~g~DgVmIG 142 (282)
.++ .+.+- .|+..|...|+= ....|.+.+.-.||+++|+|
T Consensus 257 ~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g 300 (336)
T PRK06256 257 CLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVG 300 (336)
T ss_pred HHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeEC
Confidence 321 22232 466777555553 45555543322699999999
No 440
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=75.08 E-value=19 Score=32.95 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhhcCCccEE---------------EEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCC
Q 023442 24 DPKFVGEAMSVIAANTNVPVS---------------VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 88 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvs---------------vKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~ 88 (282)
+-+...+.|++++++ ++||. .|+ .|-++ +..+++++. ++.++++|++.|.+-+=.
T Consensus 115 dg~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i-~grt~-~~a~~~i~r-a~a~~eAGA~~i~lE~v~------ 184 (264)
T PRK00311 115 GGEEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV-QGRDE-EAAEKLLED-AKALEEAGAFALVLECVP------ 184 (264)
T ss_pred CcHHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee-ecCCH-HHHHHHHHH-HHHHHHCCCCEEEEcCCC------
Confidence 334455666666544 77874 122 12111 224455554 567789999999876521
Q ss_pred CcCCcCCCCCccHHHHHHHHhcCCCceEEEcc
Q 023442 89 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120 (282)
Q Consensus 89 ~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG 120 (282)
-+..+++.++ .++|+|+-|
T Consensus 185 ------------~~~~~~i~~~-l~iP~igiG 203 (264)
T PRK00311 185 ------------AELAKEITEA-LSIPTIGIG 203 (264)
T ss_pred ------------HHHHHHHHHh-CCCCEEEec
Confidence 1334455554 579998755
No 441
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=74.75 E-value=35 Score=30.44 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCEEEEecCCccc-CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-------ccCCCCH-----HHHHH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALL-NGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-------NGGINTV-----DEVNA 130 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~-~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~-------nGdI~s~-----eda~~ 130 (282)
+...+.+.|+..+.++++.... ... ......+...+.+.+.++.+. -.+||+. +|.+.+. +.+..
T Consensus 84 ~~~~l~~~Gi~a~~l~~~~~~lit~~-~~~~~~v~~~~~~~l~~ll~~-g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~ 161 (244)
T cd04260 84 LTSTLRAQGLKAVALTGAQAGILTDD-NYSNAKIIKVNPKKILSALKE-GDVVVVAGFQGVTEDGEVTTLGRGGSDTTAA 161 (244)
T ss_pred HHHHHHhCCCCeEEechHHcCEEecC-CCCceeeeccCHHHHHHHHhC-CCEEEecCCcccCCCCCEEEeCCCchHHHHH
Confidence 5566889999999998764210 000 000112223345666666654 3589882 3455543 44444
Q ss_pred HHH--cCCCEEEe
Q 023442 131 ALR--KGAHHVMV 141 (282)
Q Consensus 131 ~l~--~g~DgVmI 141 (282)
.+. .++|-+.+
T Consensus 162 ~lA~~l~A~~l~~ 174 (244)
T cd04260 162 ALGAALNAEYVEI 174 (244)
T ss_pred HHHHHcCCCEEEE
Confidence 444 56666544
No 442
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=74.70 E-value=52 Score=30.16 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
|+.++++.+++.++-+. +.||.+|=-.+. +.+|+...+.+++ ..|...|.+--|--.+.+.. -
T Consensus 107 gArn~rn~~LL~a~g~t-----~kpV~lKrG~~~----t~~e~~~aaeyi~-~~Gn~~vilcERG~tf~y~r-------~ 169 (264)
T PRK05198 107 PAFLCRQTDLLVAAAKT-----GKVVNIKKGQFL----APWDMKNVVDKVR-EAGNDKIILCERGTSFGYNN-------L 169 (264)
T ss_pred CchhcchHHHHHHHhcc-----CCeEEecCCCcC----CHHHHHHHHHHHH-HcCCCeEEEEeCCCCcCCCC-------e
Q ss_pred CccHHHHHHHHhcCCCceEEEccCCC-----------------CHHHHHHHHHcCCCEEEe
Q 023442 98 PLKYEYYYALLRDFPDLTFTLNGGIN-----------------TVDEVNAALRKGAHHVMV 141 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~nGdI~-----------------s~eda~~~l~~g~DgVmI 141 (282)
-+++..+.-+.+ .++|||.--.=. =+.-++..+..|+||+||
T Consensus 170 ~~D~~~vp~~k~--~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~i 228 (264)
T PRK05198 170 VVDMRGLPIMRE--TGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFI 228 (264)
T ss_pred eechhhhHHHhh--CCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEE
No 443
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=74.39 E-value=26 Score=31.00 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=49.4
Q ss_pred HhCCCCEEEEecCCcc-cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCC-CEEEecHHhh
Q 023442 69 SLSPTRHFIIHSRKAL-LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRAAY 146 (282)
Q Consensus 69 e~~Gv~~i~VH~Rt~~-~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~-DgVmIGRgal 146 (282)
...-++.+.+-+.... +.|++ ...+|+.+... ....|++..||| |++.+.+++++++ .||=+..|.=
T Consensus 119 ~~~~~d~~LlDa~~~~~~GGtG-------~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE 187 (208)
T COG0135 119 EEGPVDAILLDAKVPGLPGGTG-------QTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVE 187 (208)
T ss_pred ccCCccEEEEcCCCCCCCCCCC-------cEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccc
Confidence 3455777777665432 23332 12236554333 146789999998 9999999999666 9999999998
Q ss_pred hCCcc
Q 023442 147 QNPWY 151 (282)
Q Consensus 147 ~nP~i 151 (282)
.+|-+
T Consensus 188 ~~pG~ 192 (208)
T COG0135 188 SSPGI 192 (208)
T ss_pred cCCCC
Confidence 88864
No 444
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=74.34 E-value=56 Score=29.86 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=62.4
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 96 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i 96 (282)
.|+.++++.++ ++++.+ ++.||.+|=-.+ .+.+++... +..+...|...|.+--|--.+ |.+ +.+
T Consensus 98 IgArn~rn~~L----L~a~g~-t~kpV~lKrG~~----~t~~e~l~a-aeyi~~~Gn~~viLcERG~tf-~y~----r~~ 162 (258)
T TIGR01362 98 IPAFLCRQTDL----LVAAAK-TGRIVNVKKGQF----LSPWDMKNV-VEKVLSTGNKNILLCERGTSF-GYN----NLV 162 (258)
T ss_pred eCchhcchHHH----HHHHhc-cCCeEEecCCCc----CCHHHHHHH-HHHHHHcCCCcEEEEeCCCCc-CCC----Ccc
Confidence 47888888765 555443 489999994322 234455544 344567899888887653222 221 111
Q ss_pred CCccHHHHHHHHhcCCCceEEEc---------------cCCCCH--HHHHHHHHcCCCEEEecHHhhhCCc
Q 023442 97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINTV--DEVNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s~--eda~~~l~~g~DgVmIGRgal~nP~ 150 (282)
+++..+.-+++ . ++|||.- ||.+.. .-++..+..|+||+||= .--||.
T Consensus 163 --~D~~~ip~~k~-~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE--vHpdP~ 227 (258)
T TIGR01362 163 --VDMRSLPIMRE-L-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME--THPDPK 227 (258)
T ss_pred --cchhhhHHHHh-c-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE--eCCCcc
Confidence 12333333333 3 6888751 333322 22333444899999996 334555
No 445
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=73.91 E-value=40 Score=32.97 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=79.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442 21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
-|||++.+..-++++++. +..+..-|.--...-.+++...+ +++.+.+.|+|.|++---. |... |...
T Consensus 120 AlND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvHt~e~yv~-~akel~~~g~DSIciKDma----Gllt------P~~a 187 (472)
T COG5016 120 ALNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVHTLEYYVE-LAKELLEMGVDSICIKDMA----GLLT------PYEA 187 (472)
T ss_pred hccchhHHHHHHHHHHhc-CceeEEEEEeccCCcccHHHHHH-HHHHHHHcCCCEEEeeccc----ccCC------hHHH
Confidence 378899888888888775 32332222211111123333333 4566778999999987533 3211 2234
Q ss_pred HHHHHHHHhcCCCceEEE----ccCCCCHHHHHHHHHcCCCEEEecHH----hhhCCccchhhhHhhhhCCCC-CcccHH
Q 023442 101 YEYYYALLRDFPDLTFTL----NGGINTVDEVNAALRKGAHHVMVGRA----AYQNPWYTLGHVDTAIYGAPS-SGLTRR 171 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~----nGdI~s~eda~~~l~~g~DgVmIGRg----al~nP~if~~~~~~~~~g~~~-~~~~~~ 171 (282)
|+.+..+++.. ++||-. .-|+ +.-...++.+.|+|++=-+=. =.+.|.. ..+-..+.|.+. .... .
T Consensus 188 yelVk~iK~~~-~~pv~lHtH~TsG~-a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~t--Etmv~aL~gt~yDtgld-~ 262 (472)
T COG5016 188 YELVKAIKKEL-PVPVELHTHATSGM-AEMTYLKAVEAGVDGIDTAISPLSGGTSQPAT--ETMVAALRGTGYDTGLD-L 262 (472)
T ss_pred HHHHHHHHHhc-CCeeEEecccccch-HHHHHHHHHHhCcchhhhhhccccCCCCCCcH--HHHHHHhcCCCCCcccc-H
Confidence 88888887764 688854 3343 333444555678887632211 1234543 222222334321 1122 2
Q ss_pred HHHHHHHHHHHHHHHhc
Q 023442 172 QVVEKYQIYGDAILGTY 188 (282)
Q Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (282)
+.+++..+|...+..+|
T Consensus 263 ~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 263 ELLEEIAEYFREVRKKY 279 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555556665555555
No 446
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=73.69 E-value=33 Score=33.23 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=47.6
Q ss_pred HHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 023442 30 EAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL 108 (282)
Q Consensus 30 eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~ 108 (282)
++++++++. .+.+|.+-+-+ .+..++ +.+.+.++|++.++||+-... + ......+.+
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~--~Di~~~------vv~~~a~aGAD~vTVH~ea~~-------~-------ti~~ai~~a 272 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKT--LDTGNL------EARMAADATADAVVISGLAPI-------S-------TIEKAIHEA 272 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecc--cChhhH------HHHHHHhcCCCEEEEeccCCH-------H-------HHHHHHHHH
Confidence 456666665 35555554433 121222 234456899999999984310 0 012222333
Q ss_pred hcCCCceEEE-ccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442 109 RDFPDLTFTL-NGGINTVDEVNAALRKGAHHVMVGRAA 145 (282)
Q Consensus 109 ~~~~~ipVi~-nGdI~s~eda~~~l~~g~DgVmIGRga 145 (282)
++. ++-+.. -=+..|+.+..+.+..++|.|++.++.
T Consensus 273 kk~-GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~v 309 (391)
T PRK13307 273 QKT-GIYSILDMLNVEDPVKLLESLKVKPDVVELHRGI 309 (391)
T ss_pred HHc-CCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcccc
Confidence 433 343333 222334443333335689999999855
No 447
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=73.61 E-value=8.1 Score=34.78 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
.+.+.+.++.|...+++||++.+-.|+-+ +...+.+. .+.++++|+..|.+--.
T Consensus 54 ~~e~~~~~~~I~~~~~iPv~vD~d~GyG~--~~~~v~~t-v~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 54 LTEMLAAVRRIARAVSIPVIVDADTGYGN--DPENVART-VRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEE-TTTSSS--SHHHHHHH-HHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHHhhhcCcEEEEcccccCc--hhHHHHHH-HHHHHHcCCcEEEeecc
Confidence 34566778888888999999999999876 13344444 34567999999999743
No 448
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=73.61 E-value=7.2 Score=36.33 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+++.|+++||| |.+.+.++.++|+|.+.+|.....-|++
T Consensus 244 ~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~~~~ 282 (302)
T cd01571 244 KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISKAPPV 282 (302)
T ss_pred CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCCCC
Confidence 56889999999 9999999988999999999988887775
No 449
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=73.11 E-value=23 Score=31.40 Aligned_cols=97 Identities=7% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442 28 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 106 (282)
Q Consensus 28 ~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~ 106 (282)
=-++++++++.. ++|+.+|+-. ++ .... + +.+.++|++.++||+-+.... + ...+..
T Consensus 52 G~~~v~~lr~~~~~~~lDvHLm~--~~---p~~~---i-~~~~~~Gad~itvH~ea~~~~------------~-~~~l~~ 109 (228)
T PTZ00170 52 GPPVVKSLRKHLPNTFLDCHLMV--SN---PEKW---V-DDFAKAGASQFTFHIEATEDD------------P-KAVARK 109 (228)
T ss_pred CHHHHHHHHhcCCCCCEEEEECC--CC---HHHH---H-HHHHHcCCCEEEEeccCCchH------------H-HHHHHH
Confidence 346678888776 8899998862 22 2222 2 345689999999998532100 0 122333
Q ss_pred HHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442 107 LLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 107 l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~ 150 (282)
+.+....+=|..|-. ++.+++..+++ ..+|.|++ +-.+|-
T Consensus 110 ik~~G~~~gval~p~-t~~e~l~~~l~~~~vD~Vl~---m~v~pG 150 (228)
T PTZ00170 110 IREAGMKVGVAIKPK-TPVEVLFPLIDTDLVDMVLV---MTVEPG 150 (228)
T ss_pred HHHCCCeEEEEECCC-CCHHHHHHHHccchhhhHHh---hhcccC
Confidence 333222334555655 58999988875 56888874 444555
No 450
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=72.54 E-value=51 Score=29.98 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
|.+.+.++++... +.|+|. .|. +|...+..+.++.+. +.|++.|--||......-- .+.
T Consensus 102 D~~~~~~Li~~a~---~~~vTF-HRA-fD~~~d~~~al~~l~----~lG~~rILTSGg~~~a~~g------------~~~ 160 (248)
T PRK11572 102 DMPRMRKIMAAAG---PLAVTF-HRA-FDMCANPLNALKQLA----DLGVARILTSGQQQDAEQG------------LSL 160 (248)
T ss_pred CHHHHHHHHHHhc---CCceEE-ech-hhccCCHHHHHHHHH----HcCCCEEECCCCCCCHHHH------------HHH
Q ss_pred HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
+.++.+...++-|+..||| +.+.+.++.++|+..|
T Consensus 161 L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~ 195 (248)
T PRK11572 161 IMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREV 195 (248)
T ss_pred HHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEE
No 451
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=72.52 E-value=18 Score=34.49 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH
Q 023442 66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR 133 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~ 133 (282)
+.+++.|+|.|.|.-.|. .|++...+. -+.++|+.+.++.+..+++|++.-|+=-.++|+.+.+.
T Consensus 180 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~---~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~ 246 (347)
T PRK13399 180 DFVQRTGVDALAIAIGTSHGAYKFTRKPD---GDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIIN 246 (347)
T ss_pred HHHHHHCcCEEhhhhccccCCcCCCCCCC---hhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHH
Confidence 345678999998864442 344310000 02367898888877644799999999777755554444
No 452
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=72.45 E-value=44 Score=31.04 Aligned_cols=103 Identities=9% Similarity=0.020 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 23 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 23 ~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
-+++...+=|++++++. +.++.+=-|.-.--.+.+++.++. ++...++|+|.|..++.+. .
T Consensus 130 ~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R-a~AY~eAGAD~if~~al~~-----------------~ 191 (289)
T COG2513 130 VSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIER-AQAYVEAGADAIFPEALTD-----------------L 191 (289)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHH-HHHHHHcCCcEEccccCCC-----------------H
Confidence 34444444445555544 566766666410001124444444 3567899999999998642 3
Q ss_pred HHHHHHHhcCCCceEEEc---cCCCCHHHHHHHHHcCCCEEEecHH
Q 023442 102 EYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRA 144 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi~n---GdI~s~eda~~~l~~g~DgVmIGRg 144 (282)
+.+.++++.. ++|+.+| ++-+-.-++.++-+.|+.-|..|=.
T Consensus 192 e~i~~f~~av-~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~ 236 (289)
T COG2513 192 EEIRAFAEAV-PVPLPANITEFGKTPLLTVAELAELGVKRVSYGLT 236 (289)
T ss_pred HHHHHHHHhc-CCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcH
Confidence 5566776653 4555443 3332223344455589999988843
No 453
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=72.19 E-value=19 Score=32.52 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=75.1
Q ss_pred cCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 14 HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 14 ~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
+.+ |=.+..+.+.+.++++.++++ ++.||+-|- . + .+. + +.+.+.|++.|.+|...-- ...+...
T Consensus 99 Teg-Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiD----P-~-~~q-i----~~A~~~GAd~VELhTG~YA-~a~~~~~- 163 (237)
T TIGR00559 99 TEG-GLDVARLKDKLCELVKRFHAA-GIEVSLFID----A-D-KDQ-I----SAAAEVGADRIEIHTGPYA-NAYNKKE- 163 (237)
T ss_pred CCc-CchhhhCHHHHHHHHHHHHHC-CCEEEEEeC----C-C-HHH-H----HHHHHhCcCEEEEechhhh-cCCCchh-
Confidence 344 777888999999999999776 888988642 2 1 222 2 2356899999999965311 0000000
Q ss_pred CCCCCccHHHHH---HHHhcCCCceEEEccCCCCHHHHHHHHH-cC-CCEEEecHHhhhCCc
Q 023442 94 RTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPW 150 (282)
Q Consensus 94 ~~i~~~~~~~i~---~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g-~DgVmIGRgal~nP~ 150 (282)
.. -.++.+. +.+.+ .++-|=+.-|+ |++.+..+.+ .+ .+=|-||.+++.+--
T Consensus 164 --~~-~el~~i~~aa~~A~~-lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 164 --MA-EELQRIVKASVHAHS-LGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred --HH-HHHHHHHHHHHHHHH-cCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 00 0022222 22222 36778777886 8899988877 55 899999999987765
No 454
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.10 E-value=22 Score=32.36 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCCEEEEe---cCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCC
Q 023442 62 DFIYKVSSLSPTRHFIIH---SRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 136 (282)
Q Consensus 62 ~~v~~~le~~Gv~~i~VH---~Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~ 136 (282)
..+++.+++.|+..+.-- .||.- ++|.+- -.+..+.+.+++ .++|++. ++++.+++..+.+ .+
T Consensus 32 ~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~--------~gl~~L~~~~~~-~Gl~~~T--ev~d~~~v~~~~e-~v 99 (250)
T PRK13397 32 RLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL--------QGIRYLHEVCQE-FGLLSVS--EIMSERQLEEAYD-YL 99 (250)
T ss_pred HHHHHHHHHcCCCEEEecccCCCCCCcccCCCCH--------HHHHHHHHHHHH-cCCCEEE--eeCCHHHHHHHHh-cC
Confidence 345667889998877643 57643 233321 125556677665 4899988 8999999998888 69
Q ss_pred CEEEecHHhhhCCccchhhh
Q 023442 137 HHVMVGRAAYQNPWYTLGHV 156 (282)
Q Consensus 137 DgVmIGRgal~nP~if~~~~ 156 (282)
|.+-||-..+.|..+ ...+
T Consensus 100 dilqIgs~~~~n~~L-L~~v 118 (250)
T PRK13397 100 DVIQVGARNMQNFEF-LKTL 118 (250)
T ss_pred CEEEECcccccCHHH-HHHH
Confidence 999999999999776 4544
No 455
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=72.07 E-value=47 Score=29.17 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
|.+.+.+++++.. +.|+|. .|. +|...+..+..+.+. +.|++.|--||......-- .+.
T Consensus 101 D~~~~~~Li~~a~---~~~~tF-HRA-fD~~~d~~~al~~L~----~lG~~rVLTSGg~~~a~~g------------~~~ 159 (201)
T PF03932_consen 101 DEEALEELIEAAG---GMPVTF-HRA-FDEVPDPEEALEQLI----ELGFDRVLTSGGAPTALEG------------IEN 159 (201)
T ss_dssp -HHHHHHHHHHHT---TSEEEE--GG-GGGSSTHHHHHHHHH----HHT-SEEEESTTSSSTTTC------------HHH
T ss_pred CHHHHHHHHHhcC---CCeEEE-eCc-HHHhCCHHHHHHHHH----hcCCCEEECCCCCCCHHHH------------HHH
Q ss_pred HHHHHhc-CCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 104 YYALLRD-FPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 104 i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
+.++++. ..+|-|+..||| +.+.+..+.+ +|+..+-.+
T Consensus 160 L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 160 LKELVEQAKGRIEIMPGGGV-RAENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEEEET
T ss_pred HHHHHHHcCCCcEEEecCCC-CHHHHHHHHHhhCCeEEeec
No 456
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=71.64 E-value=53 Score=30.52 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 97 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~ 97 (282)
|+.++++.+++.++-+. +.||.+| -|.-- +.+++...+.++. ..|...|.+--|--.+.+.. -
T Consensus 113 gAr~~rqtdLL~a~~~t-----gkpV~lK--kGq~~--t~~e~~~aaeki~-~~GN~~viLcERG~tFgy~~-------l 175 (290)
T PLN03033 113 PAFLCRQTDLLVAAAKT-----GKIINIK--KGQFC--APSVMRNSAEKVR-LAGNPNVMVCERGTMFGYND-------L 175 (290)
T ss_pred CcHHHHHHHHHHHHHcc-----CCeEEeC--CCCCC--CHHHHHHHHHHHH-HcCCCcEEEEeCCCCcCCCC-------c
Q ss_pred CccHHHHHHHHhcCCCceEEE--------------------ccCCCCHHHHHHHHH--cCCCEEEe
Q 023442 98 PLKYEYYYALLRDFPDLTFTL--------------------NGGINTVDEVNAALR--KGAHHVMV 141 (282)
Q Consensus 98 ~~~~~~i~~l~~~~~~ipVi~--------------------nGdI~s~eda~~~l~--~g~DgVmI 141 (282)
-+++..+.-+++ .++|||. .||-+..=-....-. .|+||+||
T Consensus 176 v~D~r~ip~mk~--~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi 239 (290)
T PLN03033 176 IVDPRNLEWMRE--ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 239 (290)
T ss_pred ccchhhhHHHHh--cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
No 457
>PRK00077 eno enolase; Provisional
Probab=71.61 E-value=78 Score=30.89 Aligned_cols=68 Identities=9% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccC--CCCHHHHHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGG--INTVDEVNAALR 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGd--I~s~eda~~~l~ 133 (282)
.+++++.+.+++++.++.+|. +.. ++-+|+...++.+... ++|| +.|+ +++++++.++++
T Consensus 263 ~~e~~~~~~~l~e~y~i~~iE--------dPl--------~~~D~~g~~~L~~~~~~~ipI-~gdE~~~t~~~~~~~~i~ 325 (425)
T PRK00077 263 SEEMIDYLAELVDKYPIVSIE--------DGL--------DENDWEGWKLLTEKLGDKVQL-VGDDLFVTNTKRLKKGIE 325 (425)
T ss_pred HHHHHHHHHHHHhhCCcEEEE--------cCC--------CCccHHHHHHHHHhcCCCCeE-EcCCCccCCHHHHHHHHH
Confidence 456666677777777755542 111 1223666667766532 5777 5556 357999999998
Q ss_pred -cCCCEEEe
Q 023442 134 -KGAHHVMV 141 (282)
Q Consensus 134 -~g~DgVmI 141 (282)
..||.|++
T Consensus 326 ~~a~d~v~i 334 (425)
T PRK00077 326 KGAANSILI 334 (425)
T ss_pred hCCCCEEEe
Confidence 67888876
No 458
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=71.35 E-value=67 Score=28.22 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 023442 30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALL 108 (282)
Q Consensus 30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~ 108 (282)
+.++.+++.+.-||++=++ |. +.+++.+....+.+-.|. +.|- +-|. .| .+.++++.
T Consensus 41 ~~~~~i~~~~~~~v~~qv~-~~----~~e~~i~~a~~l~~~~~~--~~iKIP~T~--~g-------------l~ai~~L~ 98 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV-ST----DAEGMVAEARKLASLGGN--VVVKIPVTE--DG-------------LKAIKKLS 98 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE-eC----CHHHHHHHHHHHHHhCCC--EEEEEcCcH--hH-------------HHHHHHHH
Confidence 4555555555668887775 32 234555443333332242 3321 1111 11 45666666
Q ss_pred hcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442 109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHV 139 (282)
Q Consensus 109 ~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV 139 (282)
++ +++| .-|-|+|.+++..+.+.||+.|
T Consensus 99 ~~--gi~v-~~T~V~s~~Qa~~Aa~AGA~yv 126 (211)
T cd00956 99 EE--GIKT-NVTAIFSAAQALLAAKAGATYV 126 (211)
T ss_pred Hc--CCce-eeEEecCHHHHHHHHHcCCCEE
Confidence 54 5664 6677999999999999998865
No 459
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=71.29 E-value=7 Score=36.66 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=33.3
Q ss_pred ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442 99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142 (282)
Q Consensus 99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG 142 (282)
+.|+-+.-+. ...++||+.-| |.+.+||..+.+.|++||.+.
T Consensus 210 l~W~Di~wLr-~~T~LPIvvKG-ilt~eDA~~Ave~G~~GIIVS 251 (363)
T KOG0538|consen 210 LSWKDIKWLR-SITKLPIVVKG-VLTGEDARKAVEAGVAGIIVS 251 (363)
T ss_pred CChhhhHHHH-hcCcCCeEEEe-ecccHHHHHHHHhCCceEEEe
Confidence 4577665554 45789998775 779999999999999999983
No 460
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=71.26 E-value=6 Score=36.03 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 151 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i 151 (282)
+++-++++|||. .+.+..+.++|+|.+.+|......|++
T Consensus 238 ~~~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~~~~~ 276 (281)
T cd00516 238 PRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLHSAPPL 276 (281)
T ss_pred CceEEEEeCCCC-HHHHHHHHHcCCCEEEeCcccccCccc
Confidence 467899999996 999998888999999999888887654
No 461
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=71.24 E-value=21 Score=34.50 Aligned_cols=91 Identities=18% Similarity=0.376 Sum_probs=59.4
Q ss_pred CH-HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442 24 DP-KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 102 (282)
Q Consensus 24 ~p-~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~ 102 (282)
|| +...+++++|.+++++|+.+- |. + .++ +.+.++.++-....+++=|. + +|+
T Consensus 81 DPae~fa~~vk~V~~a~~~PLIL~---~~-D----~ev---l~aale~~~~~kpLL~aAt~--------e-------Nyk 134 (386)
T PF03599_consen 81 DPAEEFAKAVKKVAEAVDVPLILC---GC-D----PEV---LKAALEACAGKKPLLYAATE--------E-------NYK 134 (386)
T ss_dssp STHHHHHHHHHHHHHC-SSEEEEE---SS-H----HHH---HHHHHHHTTTS--EEEEEBT--------T-------THH
T ss_pred ChHHHHHHHHHHHHHhcCCCEEEE---eC-C----HHH---HHHHHHHhCcCCcEEeEcCH--------H-------HHH
Confidence 76 999999999999999999872 22 1 123 33455666666666665432 1 389
Q ss_pred HHHHHHhcCCCceEEEcc--CCCCHHHHHHHHH-cCCCEEEe
Q 023442 103 YYYALLRDFPDLTFTLNG--GINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 103 ~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~-~g~DgVmI 141 (282)
.+.+++.++ +.||++.+ ||....+....+. .|.+-+++
T Consensus 135 ~m~~lA~~y-~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~dIVl 175 (386)
T PF03599_consen 135 AMAALAKEY-GHPLIVSSPIDLNLLKQLNIKLTELGVKDIVL 175 (386)
T ss_dssp HHHHHHHHC-T-EEEEE-SSCHHHHHHHHHHHHTTT-GGEEE
T ss_pred HHHHHHHHc-CCeEEEEecccHHHHHHHHHHHHhcCcccEEe
Confidence 888888775 88998877 8888777777776 67765544
No 462
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=71.11 E-value=49 Score=31.95 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442 26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 103 (282)
Q Consensus 26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~ 103 (282)
+.-.+.++++++++ ++.+.|..--+|+- .+.. .+++.+++.|+.++. ..+++-+++.
T Consensus 192 ~~di~~v~avReavG~d~~l~vDaN~~~~~----~~Ai-~~~~~le~~~l~wiE----------------EPl~~~d~~~ 250 (394)
T PRK15440 192 RKNAAMVADMREKVGDDFWLMLDCWMSLDV----NYAT-KLAHACAPYGLKWIE----------------ECLPPDDYWG 250 (394)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEECCCCCCH----HHHH-HHHHHhhhcCCccee----------------CCCCcccHHH
Confidence 44455666666665 35566655545543 1212 234455565555542 1122324566
Q ss_pred HHHHHhcCCCceEE-Ecc-CCCCHHHHHHHHH-cCCCEEE
Q 023442 104 YYALLRDFPDLTFT-LNG-GINTVDEVNAALR-KGAHHVM 140 (282)
Q Consensus 104 i~~l~~~~~~ipVi-~nG-dI~s~eda~~~l~-~g~DgVm 140 (282)
.+++.+. .++||. +.| .+.|..++.++++ ..||.|.
T Consensus 251 ~~~L~~~-~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq 289 (394)
T PRK15440 251 YRELKRN-APAGMMVTSGEHEATLQGFRTLLEMGCIDIIQ 289 (394)
T ss_pred HHHHHHh-CCCCCceecCCCccCHHHHHHHHHcCCCCEEe
Confidence 6677664 344432 334 4779999999999 5577663
No 463
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=70.73 E-value=39 Score=32.02 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEE
Q 023442 96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVM 140 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVm 140 (282)
+++-+.+..+++.+.. ++||.+.=.+.|..|+.++++.| ||.|.
T Consensus 223 ~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~div~ 267 (372)
T COG4948 223 LPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVDIVQ 267 (372)
T ss_pred CCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCCeec
Confidence 3444566667776643 49999999999999999999954 77663
No 464
>PRK06739 pyruvate kinase; Validated
Probab=70.56 E-value=10 Score=36.16 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHH--cCCCEEEec
Q 023442 68 SSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR--KGAHHVMVG 142 (282)
Q Consensus 68 le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIG 142 (282)
..+.|+|+|.++ -|+.. +...++++.++. .+++||+ -|.+.+-++.+-+ .-+|||||+
T Consensus 174 ~~~~~vD~ia~SFVr~~~---------------Dv~~~r~~l~~~g~~~~~Iia--KIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 174 LLEEDVDFIACSFVRKPS---------------HIKEIRDFIQQYKETSPNLIA--KIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred HHHcCCCEEEECCCCCHH---------------HHHHHHHHHHHcCCCCCcEEE--EECCHHHHHHHHHHHHhcCEEEEE
Confidence 447899999987 55421 134455555542 3577776 4667666665555 568999999
Q ss_pred HHhhhCC
Q 023442 143 RAAYQNP 149 (282)
Q Consensus 143 Rgal~nP 149 (282)
||=|+--
T Consensus 237 RGDLgve 243 (352)
T PRK06739 237 RGDLGVE 243 (352)
T ss_pred Ccccccc
Confidence 9988763
No 465
>PLN02762 pyruvate kinase complex alpha subunit
Probab=70.40 E-value=10 Score=37.99 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=42.8
Q ss_pred HHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-C--CceEEEccCCCCHHHHHHHHH--cCCCEEEe
Q 023442 68 SSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-P--DLTFTLNGGINTVDEVNAALR--KGAHHVMV 141 (282)
Q Consensus 68 le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~--~ipVi~nGdI~s~eda~~~l~--~g~DgVmI 141 (282)
..+.|+|+|.++ -|+.. | ...++++..+. . +++||+ -|.+.+-++.+-+ .-+|||||
T Consensus 212 ~~~~~vD~ia~SFVr~a~-------D--------v~~~r~~l~~~g~~~~~~IiA--KIE~~~av~nl~eIi~~sDgiMV 274 (509)
T PLN02762 212 GISEGVDFIAVSFVKSAE-------V--------IKHLKSYIAARSRDSDIGVIA--KIESLDSLKNLEEIIRASDGAMV 274 (509)
T ss_pred HHHcCCCEEEECCCCCHH-------H--------HHHHHHHHHHcCCCCCceEEE--EeCCHHHHHHHHHHHHhcCEEEE
Confidence 357899999987 55421 1 34445555432 1 467776 5777777766655 57999999
Q ss_pred cHHhhhC
Q 023442 142 GRAAYQN 148 (282)
Q Consensus 142 GRgal~n 148 (282)
+||=|+-
T Consensus 275 ARGDLGv 281 (509)
T PLN02762 275 ARGDLGA 281 (509)
T ss_pred ecCcccc
Confidence 9997765
No 466
>TIGR03586 PseI pseudaminic acid synthase.
Probab=70.26 E-value=99 Score=29.22 Aligned_cols=92 Identities=12% Similarity=0.203 Sum_probs=56.7
Q ss_pred cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC-CEEEEecC
Q 023442 3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSR 81 (282)
Q Consensus 3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv-~~i~VH~R 81 (282)
.+|||.=|| ||.-+++.+++..+.+ .++||.+|. |.. +++|+...+ ..+.+.|. +.+.+|+
T Consensus 108 ~~~v~~~KI------~S~~~~n~~LL~~va~-----~gkPvilst--G~~---t~~Ei~~Av-~~i~~~g~~~i~LlhC- 169 (327)
T TIGR03586 108 SLDVPAYKI------ASFEITDLPLIRYVAK-----TGKPIIMST--GIA---TLEEIQEAV-EACREAGCKDLVLLKC- 169 (327)
T ss_pred HcCCCEEEE------CCccccCHHHHHHHHh-----cCCcEEEEC--CCC---CHHHHHHHH-HHHHHCCCCcEEEEec-
Confidence 457776443 5667888888766654 389999886 442 345554443 45567888 5666785
Q ss_pred CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc
Q 023442 82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120 (282)
Q Consensus 82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG 120 (282)
+..| .++. ..+++..+..+.+.+ ++||..++
T Consensus 170 ~s~Y--P~~~-----~~~nL~~i~~lk~~f-~~pVG~SD 200 (327)
T TIGR03586 170 TSSY--PAPL-----EDANLRTIPDLAERF-NVPVGLSD 200 (327)
T ss_pred CCCC--CCCc-----ccCCHHHHHHHHHHh-CCCEEeeC
Confidence 4333 2111 234566777776665 79996664
No 467
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=70.16 E-value=19 Score=34.07 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHhCCCCEEEEecC----------------CcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE--------Ec
Q 023442 65 YKVSSLSPTRHFIIHSR----------------KALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT--------LN 119 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~R----------------t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi--------~n 119 (282)
++.+.++|.|.|.+|+- |..|.|. -.++ ...-.+.+.++.+.. ++++|. .+
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs--lenR--~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS--FENR--MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC--HHHH--hHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 55667899999999972 2233332 1111 111133345554443 245653 12
Q ss_pred cCCCCHHHHHHHH---H-cCCCEEEecHHhhh
Q 023442 120 GGINTVDEVNAAL---R-KGAHHVMVGRAAYQ 147 (282)
Q Consensus 120 GdI~s~eda~~~l---~-~g~DgVmIGRgal~ 147 (282)
|+ .+.+++.++. + .|+|.+-+..|...
T Consensus 219 ~g-~~~~e~~~i~~~Le~~G~d~i~vs~g~~e 249 (353)
T cd02930 219 GG-STWEEVVALAKALEAAGADILNTGIGWHE 249 (353)
T ss_pred CC-CCHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 43 4677666544 4 79999998666543
No 468
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=69.98 E-value=42 Score=29.43 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442 72 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 72 Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~ 150 (282)
.+|++-+...+....|.+ ...+|+.+. +.. +.|++..||| |++.+.++++ .+..||=+..|.=..|-
T Consensus 124 ~~d~~L~Ds~~~~~GGtG-------~~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 124 DADGLLLDAYVGLPGGTG-------KTFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred cCCEEEEcCCCCCCCCCC-------CccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 578888887654222321 112365441 223 5699999998 8999999998 67888877777654454
No 469
>PLN02429 triosephosphate isomerase
Probab=69.30 E-value=4.1 Score=38.28 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 152 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if 152 (282)
.+++|++.|+|..-.+.+.+.+.++||+.||++.+ +|.-|
T Consensus 262 ~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL-~~~~F 301 (315)
T PLN02429 262 SKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASL-KGPEF 301 (315)
T ss_pred cCceEEEcCccCHHHHHHHhcCCCCCEEEeeccee-cHHHH
Confidence 36899999999555444444448999999999998 44434
No 470
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=69.28 E-value=74 Score=27.81 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442 29 GEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 106 (282)
Q Consensus 29 ~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~ 106 (282)
.+.++++++.+ ++.+.+...-+|+. ++..+ +.+.+++.++.+|. + .+++-+++...+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~----~~a~~-~~~~l~~~~i~~iE--------e--------P~~~~d~~~~~~ 139 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTP----KEAIR-LIRALEKYGLAWIE--------E--------PCAPDDLEGYAA 139 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHhhhcCCCeEE--------C--------CCCccCHHHHHH
Confidence 57778888776 46677776666753 23333 33455666666653 0 111223565666
Q ss_pred HHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 107 LLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 107 l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+.+. ..+||.+.=.+.+.++..++++ ..+|.+.+
T Consensus 140 L~~~-~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 140 LRRR-TGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred HHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 6554 5799988556889999988888 56777754
No 471
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=68.59 E-value=57 Score=27.74 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhhcCCccE--EEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442 24 DPKFVGEAMSVIAANTNVPV--SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~~ipv--svKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R 81 (282)
+...--++++++++..+.|+ -++++ + ..+ ++ +.+.++|++.+++|+.
T Consensus 40 ~~~~~~~~v~~i~~~~~~~v~v~lm~~---~----~~~---~~-~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 40 NLTFGPPVLEALRKYTDLPIDVHLMVE---N----PDR---YI-EDFAEAGADIITVHPE 88 (210)
T ss_pred CcccCHHHHHHHHhcCCCcEEEEeeeC---C----HHH---HH-HHHHHcCCCEEEEccC
Confidence 33345567777776666674 45554 1 122 22 3445899999999984
No 472
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=68.57 E-value=16 Score=36.09 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+++.+ +.|+++|.|-....+++|. ++.+.++.+ .+++||.--==|.++-++.+....|||+|.+==
T Consensus 75 ~a~~y-~~gA~aiSVlTe~~~F~Gs------------~~~l~~vr~-~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~ 140 (454)
T PRK09427 75 IARVY-KHYASAISVLTDEKYFQGS------------FDFLPIVRA-IVTQPILCKDFIIDPYQIYLARYYGADAILLML 140 (454)
T ss_pred HHHHH-HcCCeEEEEecCcCcCCCC------------HHHHHHHHH-hCCCCEEeccccCCHHHHHHHHHcCCCchhHHH
Confidence 34555 7889999998776667775 677766655 468999888878999999999999999998877
Q ss_pred HhhhCCcc
Q 023442 144 AAYQNPWY 151 (282)
Q Consensus 144 gal~nP~i 151 (282)
++|....+
T Consensus 141 ~~L~~~~l 148 (454)
T PRK09427 141 SVLDDEQY 148 (454)
T ss_pred HhCCHHHH
Confidence 77765444
No 473
>PTZ00066 pyruvate kinase; Provisional
Probab=68.33 E-value=16 Score=36.76 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=43.4
Q ss_pred HHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--cCCCEEEecH
Q 023442 68 SSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR 143 (282)
Q Consensus 68 le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGR 143 (282)
..+.|+|+|.++ -|+.. | ...++++..+. .+++||+ -|.+.+-++.+-+ .-+|||||+|
T Consensus 219 ~~~~~vD~IalSFVr~a~-------D--------I~~~r~~l~~~g~~~~IiA--KIE~~~av~NldeIl~~sDGIMVAR 281 (513)
T PTZ00066 219 AIPMGCDFIALSFVQSAD-------D--------VRLCRQLLGERGRHIKIIP--KIENIEGLINFDEILAESDGIMVAR 281 (513)
T ss_pred HHhcCCCEEEECCCCCHH-------H--------HHHHHHHHHhCCCCceEEE--EECCHHHHHHHHHHHHhcCEEEEEc
Confidence 457899999887 45421 1 34455555432 2577776 4777777776665 5789999999
Q ss_pred HhhhC
Q 023442 144 AAYQN 148 (282)
Q Consensus 144 gal~n 148 (282)
|=|+-
T Consensus 282 GDLGv 286 (513)
T PTZ00066 282 GDLGM 286 (513)
T ss_pred ccccc
Confidence 98776
No 474
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=68.20 E-value=35 Score=31.28 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCccEE-------EEec--CCCCC----CCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442 27 FVGEAMSVIAANTNVPVS-------VKCR--IGVDD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93 (282)
Q Consensus 27 ~~~eiv~~v~~~~~ipvs-------vKiR--~G~d~----~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~ 93 (282)
.+.+.++.+.+. ++||. ...| -|+.- .+...++++. ++.++++|++.|.+-+=.
T Consensus 117 ~~~~~i~~l~~~-gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~-A~a~e~AGA~~ivlE~vp----------- 183 (263)
T TIGR00222 117 WLVETVQMLTER-GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLED-ALALEEAGAQLLVLECVP----------- 183 (263)
T ss_pred hHHHHHHHHHHC-CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHH-HHHHHHcCCCEEEEcCCc-----------
Confidence 344555555443 77877 3333 12321 1234455554 567889999999876521
Q ss_pred CCCCCccHHHHHHHHhcCCCceEEEcc
Q 023442 94 RTIPPLKYEYYYALLRDFPDLTFTLNG 120 (282)
Q Consensus 94 ~~i~~~~~~~i~~l~~~~~~ipVi~nG 120 (282)
-+..+++.++ .++|+|+-|
T Consensus 184 -------~~~a~~It~~-l~iP~iGIG 202 (263)
T TIGR00222 184 -------VELAAKITEA-LAIPVIGIG 202 (263)
T ss_pred -------HHHHHHHHHh-CCCCEEeec
Confidence 2334455554 589998755
No 475
>PLN02765 pyruvate kinase
Probab=68.06 E-value=14 Score=37.10 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=41.8
Q ss_pred HhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHH--cCCCEEEecH
Q 023442 69 SLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR 143 (282)
Q Consensus 69 e~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGR 143 (282)
.+.|+|+|.++ -|+.. +...++++..+. .+++||+ -|.+.+-++.+-+ .-+|||||+|
T Consensus 217 ~~~~vD~ia~SFVr~a~---------------DI~~~r~~l~~~g~~~~~Iia--KIE~~~av~nl~eIi~~sDgIMVAR 279 (526)
T PLN02765 217 VPNKIDFLSLSYTRHAE---------------DVREAREFLSSLGLSQTQIFA--KIENVEGLTHFDEILQEADGIILSR 279 (526)
T ss_pred HHcCCCEEEECCCCCHH---------------HHHHHHHHHHhcCCCCCcEEE--EECCHHHHHHHHHHHHhcCEEEEec
Confidence 46899999987 45421 134455555432 2567766 4667766665555 5789999999
Q ss_pred HhhhC
Q 023442 144 AAYQN 148 (282)
Q Consensus 144 gal~n 148 (282)
|=|+-
T Consensus 280 GDLGv 284 (526)
T PLN02765 280 GNLGI 284 (526)
T ss_pred Ccccc
Confidence 97765
No 476
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=67.74 E-value=72 Score=27.92 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC---------HHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---------VDE 127 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s---------~ed 127 (282)
..+....+++.+++.|++.+.+.+... +.+.+.. .++.+ +..+||.- ..+
T Consensus 127 ~~~~~~~~~~~a~~~g~~G~V~~~~~~------------------~~i~~~~--~~~~~-~ltPGI~~~~~~~dq~r~~~ 185 (216)
T cd04725 127 LEDLVERLAKLAREAGVDGVVCGATEP------------------EALRRAL--GPDFL-ILTPGIGAQGSGDDQKRGGT 185 (216)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCcch------------------HHHHHhh--CCCCe-EEcCCcCCCCCccccccccC
Confidence 334455567777888988887766421 1121211 23454 66777763 225
Q ss_pred HHHHHHcCCCEEEecHHhhhCCc
Q 023442 128 VNAALRKGAHHVMVGRAAYQNPW 150 (282)
Q Consensus 128 a~~~l~~g~DgVmIGRgal~nP~ 150 (282)
..++++.|++++.+||+++..+.
T Consensus 186 ~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 186 PEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred HHHHHHcCCcEEEEChhhccCCC
Confidence 56666778999999999987766
No 477
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.60 E-value=22 Score=33.64 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHhCCCCEEEEec----------------CCcccCCCCcCCcCCCCCccHHHHHHHHhcC-----CCceEEE-----
Q 023442 65 YKVSSLSPTRHFIIHS----------------RKALLNGISPAENRTIPPLKYEYYYALLRDF-----PDLTFTL----- 118 (282)
Q Consensus 65 ~~~le~~Gv~~i~VH~----------------Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-----~~ipVi~----- 118 (282)
++.++++|.|.|.+|+ ||..|.|. -.++. ..-.+.+..+.+.. ++++|..
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs--lenR~--r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS--LENRM--RFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc--HHHHH--HHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 5667889999999996 23334442 12211 11123344444433 2445432
Q ss_pred ---ccCCCCHHHHHHH---HH-cCCCEEEecHHhh
Q 023442 119 ---NGGINTVDEVNAA---LR-KGAHHVMVGRAAY 146 (282)
Q Consensus 119 ---nGdI~s~eda~~~---l~-~g~DgVmIGRgal 146 (282)
.||+ +.++..++ ++ .|+|.|-+..+-.
T Consensus 226 ~~~~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 226 EPEEPGI-RMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred cccCCCC-CHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 3444 45665544 34 7999999876644
No 478
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=66.97 E-value=1.1e+02 Score=28.51 Aligned_cols=41 Identities=7% Similarity=0.223 Sum_probs=30.6
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEe
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMV 141 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmI 141 (282)
+++...++.+. .++||.+.=.+.++.|+.++++. .+|.|.+
T Consensus 205 ~~~~~~~l~~~-~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 205 QFDEMLQLSQD-YQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred cHHHHHHHHHh-CCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 45666666554 57999998889999999999994 5555533
No 479
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.23 E-value=69 Score=29.41 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=60.2
Q ss_pred cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442 18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 95 (282)
Q Consensus 18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~ 95 (282)
|-...-..+.-.++++.+.+.+ ++||.+-+ |. . +.+.++ .++.+++.|+|++.+.+-. |...+.
T Consensus 50 GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~-~---t~~ai~-~a~~a~~~Gadav~~~pP~--y~~~s~----- 115 (296)
T TIGR03249 50 GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG-N---TSDAIE-IARLAEKAGADGYLLLPPY--LINGEQ----- 115 (296)
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc-c---HHHHHH-HHHHHHHhCCCEEEECCCC--CCCCCH-----
Confidence 4344445555566677666654 47888765 32 1 334444 4567789999999987632 111111
Q ss_pred CCCccHHHHHHHHhcCCCceEE-Ec--cCCCCHHHHHHHHH--cCCCEE
Q 023442 96 IPPLKYEYYYALLRDFPDLTFT-LN--GGINTVDEVNAALR--KGAHHV 139 (282)
Q Consensus 96 i~~~~~~~i~~l~~~~~~ipVi-~n--GdI~s~eda~~~l~--~g~DgV 139 (282)
..-++++.++++. .++||+ .| |--.+++.+.++.+ ..+-||
T Consensus 116 --~~i~~~f~~v~~a-~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgi 161 (296)
T TIGR03249 116 --EGLYAHVEAVCES-TDLGVIVYQRDNAVLNADTLERLADRCPNLVGF 161 (296)
T ss_pred --HHHHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 1115566677664 478864 44 43347888887764 344444
No 480
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=66.07 E-value=1.1e+02 Score=29.57 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCC--CCHHHHHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGI--NTVDEVNAALR 133 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI--~s~eda~~~l~ 133 (282)
..+.++++.+++++.++.+|. +. +++-+|+...++.+.. .++||++ |+. ++++++.++++
T Consensus 263 ~~eai~~~~~l~e~~~i~~iE--------dP--------l~~~D~eg~~~L~~~~g~~ipi~g-dE~~~~~~~~~~~~i~ 325 (408)
T cd03313 263 SEELIDYYKELVKKYPIVSIE--------DP--------FDEDDWEGWAKLTAKLGDKIQIVG-DDLFVTNPERLKKGIE 325 (408)
T ss_pred HHHHHHHHHHHHHhCCcEEEE--------eC--------CCCcCHHHHHHHHHhcCCCCeEEc-CCcccCCHHHHHHHHH
Confidence 355556566666666654442 11 1122366666666543 2677744 563 58999999998
Q ss_pred -cCCCEEEe
Q 023442 134 -KGAHHVMV 141 (282)
Q Consensus 134 -~g~DgVmI 141 (282)
..||.|++
T Consensus 326 ~~a~d~v~i 334 (408)
T cd03313 326 KKAANALLI 334 (408)
T ss_pred hCCCCEEEE
Confidence 66888875
No 481
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=65.70 E-value=23 Score=28.02 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442 71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 145 (282)
Q Consensus 71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga 145 (282)
...+.|.++.-+..+.. ....+..+++..++++|+..|-..| ...+.++. .++|.|+.|-|=
T Consensus 38 ~~pdiv~~S~~~~~~~~------------~~~~~~~ik~~~p~~~iv~GG~~~t-~~p~~~~~~~~~D~vv~GEgE 100 (127)
T cd02068 38 LKPDVVGISLMTSAIYE------------ALELAKIAKEVLPNVIVVVGGPHAT-FFPEEILEEPGVDFVVIGEGE 100 (127)
T ss_pred cCCCEEEEeeccccHHH------------HHHHHHHHHHHCCCCEEEECCcchh-hCHHHHhcCCCCCEEEECCcH
Confidence 56898888875432110 1344455555567888887776654 22333244 789999999663
No 482
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=65.56 E-value=46 Score=29.08 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=36.3
Q ss_pred HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEc--cCCCCHHHHHHHHHcCCCEEEecH
Q 023442 66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMVGR 143 (282)
Q Consensus 66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~n--GdI~s~eda~~~l~~g~DgVmIGR 143 (282)
+.+.+.|++.|.|+. +..+.-+.+..++++|+++ =.|+|.+++..+.+.|++.|.+.+
T Consensus 9 ~~l~~~g~dgi~v~~--------------------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 9 DKLKELGVDGILVSN--------------------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred HHHHhCCCCEEEEcC--------------------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 346789999999984 1112222233455666553 346677777666667777777765
Q ss_pred Hh
Q 023442 144 AA 145 (282)
Q Consensus 144 ga 145 (282)
-+
T Consensus 69 EL 70 (233)
T PF01136_consen 69 EL 70 (233)
T ss_pred cC
Confidence 54
No 483
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.39 E-value=73 Score=30.71 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=30.3
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEE
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 139 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgV 139 (282)
+++...++.+. .++||.++=.+.+.+++.++++ ..+|.+
T Consensus 249 d~~~~~~L~~~-~~~PIa~dEs~~~~~~~~~~i~~~avdil 288 (395)
T cd03323 249 GREGMAEFRRA-TGLPLATNMIVTDFRQLGHAIQLNAVDIP 288 (395)
T ss_pred CHHHHHHHHHh-cCCCEEcCCcccCHHHHHHHHHcCCCcEE
Confidence 56666677664 5799988777889999999998 557766
No 484
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.31 E-value=58 Score=29.26 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
..+||.+.=.+.+.+|+.++++ ..+|.|.+
T Consensus 175 ~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~ 205 (263)
T cd03320 175 AGVPIALDESLRRLDDPLALAAAGALGALVL 205 (263)
T ss_pred cCCCeeeCCccccccCHHHHHhcCCCCEEEE
Confidence 4789988878899999999998 56887765
No 485
>PRK08508 biotin synthase; Provisional
Probab=65.19 E-value=40 Score=30.82 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHH----HHHhcCCCceEEEccCCCCHHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYY----ALLRDFPDLTFTLNGGINTVDEVNA 130 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~----~l~~~~~~ipVi~nGdI~s~eda~~ 130 (282)
.+++++. ++.+.+.|+..+.+. +++ . .+ ..++++. .++++.+++.+.++-+..+.+.+++
T Consensus 42 ~eeI~~~-a~~a~~~g~~~~~lv~sg~~-----~--~~------~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~ 107 (279)
T PRK08508 42 IEQIVQE-AKMAKANGALGFCLVTSGRG-----L--DD------KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKE 107 (279)
T ss_pred HHHHHHH-HHHHHHCCCCEEEEEeccCC-----C--Cc------ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHH
Confidence 3455554 334456799888763 321 1 11 0144433 3444446788877777779999999
Q ss_pred HHHcCCCEEEec
Q 023442 131 ALRKGAHHVMVG 142 (282)
Q Consensus 131 ~l~~g~DgVmIG 142 (282)
+.+.|+|.+-++
T Consensus 108 Lk~aGld~~~~~ 119 (279)
T PRK08508 108 LKKAGIFSYNHN 119 (279)
T ss_pred HHHcCCCEEccc
Confidence 989999999875
No 486
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=65.15 E-value=87 Score=28.44 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442 24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 101 (282)
Q Consensus 24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~ 101 (282)
..+.-.++++.+.+.+ ++||.+-+- -. +..+.++ .++.+++.|+|++.+..-. +...+..+ -.
T Consensus 52 t~~Er~~l~~~~~~~~~~~~~vi~gv~--~~---st~~~i~-~a~~a~~~Gad~v~v~~P~--~~~~s~~~-------l~ 116 (289)
T PF00701_consen 52 TDEERKELLEIVVEAAAGRVPVIAGVG--AN---STEEAIE-LARHAQDAGADAVLVIPPY--YFKPSQEE-------LI 116 (289)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEE--SS---SHHHHHH-HHHHHHHTT-SEEEEEEST--SSSCCHHH-------HH
T ss_pred CHHHHHHHHHHHHHHccCceEEEecCc--ch---hHHHHHH-HHHHHhhcCceEEEEeccc--cccchhhH-------HH
Confidence 3444456666665544 578888653 22 3445555 3567789999999887532 11111100 14
Q ss_pred HHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH
Q 023442 102 EYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR 133 (282)
Q Consensus 102 ~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~ 133 (282)
+++.+++. .+++||+ .| |--.|++.+.++.+
T Consensus 117 ~y~~~ia~-~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 117 DYFRAIAD-ATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHHH-HSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHHHHh-hcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 55666664 3677774 33 55567777777666
No 487
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=65.11 E-value=47 Score=27.57 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC--CceEEE-ccCCC-------CHHHHHHHHH
Q 023442 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTL-NGGIN-------TVDEVNAALR 133 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~--~ipVi~-nGdI~-------s~eda~~~l~ 133 (282)
+.+.+.+.|++.|.+.+.. .+ .+.+... ++||+. .|.-. +.+.++++.+
T Consensus 18 ~~~~~~~~gv~gi~~~g~~------------------i~---~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 18 LCDEAIEYGFAAVCVNPGY------------------VR---LAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred HHHHHHHhCCcEEEECHHH------------------HH---HHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 3455667999999998711 12 2222222 478653 44433 4455555555
Q ss_pred cCCCEEEec
Q 023442 134 KGAHHVMVG 142 (282)
Q Consensus 134 ~g~DgVmIG 142 (282)
.|||+|++.
T Consensus 77 ~Gad~i~v~ 85 (201)
T cd00945 77 LGADEIDVV 85 (201)
T ss_pred cCCCEEEEe
Confidence 899999996
No 488
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=64.87 E-value=1e+02 Score=27.50 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442 28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 107 (282)
Q Consensus 28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l 107 (282)
+.++++.+++. ++-+.+-+..+-.- +.+..++.. +|.|.|=.=...+.|. ..-|-.++-++++
T Consensus 97 ~~~~i~~Ik~~-G~kaGlalnP~T~~-~~l~~~l~~---------vD~VLvMsV~PGf~GQ------~fi~~~l~KI~~l 159 (229)
T PRK09722 97 AFRLIDEIRRA-GMKVGLVLNPETPV-ESIKYYIHL---------LDKITVMTVDPGFAGQ------PFIPEMLDKIAEL 159 (229)
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCH-HHHHHHHHh---------cCEEEEEEEcCCCcch------hccHHHHHHHHHH
Q ss_pred H----hcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442 108 L----RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 146 (282)
Q Consensus 108 ~----~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal 146 (282)
. +...++.|-.-||| +.+.+.++.+.|||.+.+|++++
T Consensus 160 r~~~~~~~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~i 201 (229)
T PRK09722 160 KALRERNGLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGL 201 (229)
T ss_pred HHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHH
No 489
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=64.74 E-value=76 Score=29.32 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=55.1
Q ss_pred ccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442 17 FGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 94 (282)
Q Consensus 17 yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~ 94 (282)
.|-...-..+.=.++++.+.+.+ ++||.+-+ |. +..+.++ .++.++++|++++.+.+-. |...+..
T Consensus 51 tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~~----~t~~~i~-~~~~a~~~Gadav~~~pP~--y~~~~~~--- 118 (303)
T PRK03620 51 TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--GG----GTAQAIE-YAQAAERAGADGILLLPPY--LTEAPQE--- 118 (303)
T ss_pred CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CC----CHHHHHH-HHHHHHHhCCCEEEECCCC--CCCCCHH---
Confidence 34444445555567777776655 58888765 31 2344454 3566789999999987532 1111110
Q ss_pred CCCCccHHHHHHHHhcCCCceEE-Ec--cCCCCHHHHHHHH
Q 023442 95 TIPPLKYEYYYALLRDFPDLTFT-LN--GGINTVDEVNAAL 132 (282)
Q Consensus 95 ~i~~~~~~~i~~l~~~~~~ipVi-~n--GdI~s~eda~~~l 132 (282)
.-++++.++++. .++||+ +| |--.+++.+.++.
T Consensus 119 ----~i~~~f~~va~~-~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 119 ----GLAAHVEAVCKS-TDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred ----HHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHH
Confidence 014555666554 467754 33 2123666666666
No 490
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.51 E-value=70 Score=30.19 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEE-ecCC----cccCCCCcCCcCCCCCccHHHHHHHHhcCCCc--eEEEccCCCCHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFII-HSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVN 129 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~V-H~Rt----~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~i--pVi~nGdI~s~eda~ 129 (282)
.++..+ +++.+.++|++.|.| |+.. ....|.. ..+ .|+++.++++...+. -+...-++.+.+|++
T Consensus 23 ~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~-----~~~--~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 23 IEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFS-----AHT--DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCC-----CCC--hHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 444443 567789999999999 4432 1111221 112 378887776654333 334555677899999
Q ss_pred HHHHcCCCEEEecHH
Q 023442 130 AALRKGAHHVMVGRA 144 (282)
Q Consensus 130 ~~l~~g~DgVmIGRg 144 (282)
.+.+.|+|.|-|+-.
T Consensus 95 ~a~~~gvd~iri~~~ 109 (333)
T TIGR03217 95 AAYDAGARTVRVATH 109 (333)
T ss_pred HHHHCCCCEEEEEec
Confidence 999999999988743
No 491
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=64.46 E-value=62 Score=30.41 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-----------ccCCCC
Q 023442 56 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-----------NGGINT 124 (282)
Q Consensus 56 ~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~-----------nGdI~s 124 (282)
+.+++.+.+ +.+.+.|+..|.+.+..... .+. ....+.+..+++..+++.+.+ +-|+.+
T Consensus 71 s~eeI~e~~-~~~~~~G~~~i~l~gG~~p~-----~~~----~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~ 140 (343)
T TIGR03551 71 SLEEIAERA-AEAWKAGATEVCIQGGIHPD-----LDG----DFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSV 140 (343)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEeCCCCC-----CCH----HHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCH
Confidence 466766644 45677899998887542110 000 001233455555556777765 567778
Q ss_pred HHHHHHHHHcCCCEEE
Q 023442 125 VDEVNAALRKGAHHVM 140 (282)
Q Consensus 125 ~eda~~~l~~g~DgVm 140 (282)
.+.++++.+.|+|.+.
T Consensus 141 ~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 141 EEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHHHHHhCccccc
Confidence 8888888889999887
No 492
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.29 E-value=1e+02 Score=28.86 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=31.0
Q ss_pred cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442 100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 141 (282)
Q Consensus 100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI 141 (282)
+++..+++.+. ..+||.+.=.+.|.+|+.++++ ..+|.|.+
T Consensus 216 d~~~~~~l~~~-~~~pia~dEs~~~~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 216 DLIDHAELQKL-LKTPICLDESIQSAEDARKAIELGACKIINI 257 (354)
T ss_pred HHHHHHHHHhh-cCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 45555666554 5799988778999999999998 56787754
No 493
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=64.17 E-value=1.2e+02 Score=27.78 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC--CCEEEEe--cCCcccCCCCcCCcCCCCCcc
Q 023442 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIH--SRKALLNGISPAENRTIPPLK 100 (282)
Q Consensus 25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G--v~~i~VH--~Rt~~~~G~~~ad~~~i~~~~ 100 (282)
.+...+.+....+..+.|+.+=+. |.+ .+++.+ +++.+++++ ++.|.+- .... .|.+ ...-.-+..-
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~----~~~~~~-~a~~~~~~~~~~d~ielN~~cP~~--~~~g-~~l~~~~~~~ 145 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSS----VEEFAE-VAEKLEKAPPYVDAYELNLSCPHV--KGGG-IAIGQDPELS 145 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCC----HHHHHH-HHHHHHhccCccCEEEEECCCCCC--CCCc-cccccCHHHH
Confidence 344444444444445678877664 322 344444 455666653 8999884 2221 1110 1110111122
Q ss_pred HHHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHH-cCCCEEEec
Q 023442 101 YEYYYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMVG 142 (282)
Q Consensus 101 ~~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~-~g~DgVmIG 142 (282)
.+.+.++++. .++||.. +.++.+..++.+.++ .|+|++.+.
T Consensus 146 ~eiv~~vr~~-~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 146 ADVVKAVKDK-TDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHHHh-cCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3445555443 4678764 444444444445555 899999873
No 494
>PLN02461 Probable pyruvate kinase
Probab=63.99 E-value=16 Score=36.75 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=43.0
Q ss_pred HhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--cCCCEEEecHH
Q 023442 69 SLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRA 144 (282)
Q Consensus 69 e~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGRg 144 (282)
.+.|+|+|.++ -|+.. +...++++..+. .+++||+ -|.+.+.++.+-+ .-+|||||+||
T Consensus 204 ~~~~vD~ia~SFVr~a~---------------DV~~~r~~l~~~~~~~~IiA--KIE~~~av~nl~eIi~~sDgIMVARG 266 (511)
T PLN02461 204 VPNKIDFIALSFVRKGS---------------DLVEVRKVLGEHAKSILLIS--KVENQEGLDNFDDILAESDAFMVARG 266 (511)
T ss_pred hhcCCCEEEECCCCCHH---------------HHHHHHHHHHhCCCCCCEEE--EECCHHHHHHHHHHHHhcCEEEEecc
Confidence 47899999987 45421 134455555432 3577776 4777777776665 57999999999
Q ss_pred hhhC
Q 023442 145 AYQN 148 (282)
Q Consensus 145 al~n 148 (282)
=|+-
T Consensus 267 DLGv 270 (511)
T PLN02461 267 DLGM 270 (511)
T ss_pred cccc
Confidence 8765
No 495
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.99 E-value=47 Score=30.01 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=40.5
Q ss_pred ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCC-CCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442 13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 82 (282)
Q Consensus 13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~-d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt 82 (282)
|=| +|++.+-..+.+.+.++-.+++ +++|+.. |+ -+.--...-++...+.+++.|.+.|.|+..+
T Consensus 29 Kfg-~Gt~~l~~~~~l~eki~la~~~-~V~v~~G---Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~ 94 (237)
T TIGR03849 29 KFG-WGTSALIDRDIVKEKIEMYKDY-GIKVYPG---GTLFEIAHSKGKFDEYLNECDELGFEAVEISDGS 94 (237)
T ss_pred Eec-CceEeeccHHHHHHHHHHHHHc-CCeEeCC---ccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCc
Confidence 444 5888888889999999887765 6777643 21 1100000111122346789999999999755
No 496
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=62.56 E-value=45 Score=30.95 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc-cHHHH-HHHHhcC--CCce-EEEccCCCCHHHHHHH
Q 023442 57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYY-YALLRDF--PDLT-FTLNGGINTVDEVNAA 131 (282)
Q Consensus 57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~-~~~~i-~~l~~~~--~~ip-Vi~nGdI~s~eda~~~ 131 (282)
++.+++.+.+.. +.|+..|+++-|... .+...||++ ....+ ..+++.. .++- |+=+|++++..++.-+
T Consensus 141 L~~l~~ea~~Av-~~G~~ilILsDr~~~------~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~L 213 (287)
T PF04898_consen 141 LDRLCEEAEAAV-REGANILILSDRNAS------PDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATL 213 (287)
T ss_dssp HHHHHHHHHHHH-HCT-SEEEEESTC-C------TTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCcEEEECCCCCC------cCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHH
Confidence 445554444444 679999999988621 122234431 11112 2333332 2344 4569999999999988
Q ss_pred HHcCCCEEEecHHhhhCCccchhhhHh
Q 023442 132 LRKGAHHVMVGRAAYQNPWYTLGHVDT 158 (282)
Q Consensus 132 l~~g~DgVmIGRgal~nP~if~~~~~~ 158 (282)
+-.|||+| |||+.++.+..
T Consensus 214 lGyGA~AV--------~PYla~e~~~~ 232 (287)
T PF04898_consen 214 LGYGADAV--------NPYLAYETIRE 232 (287)
T ss_dssp HCTT-SEE--------EEHCCHHHHHH
T ss_pred HcCCHhhh--------cHHHHHHHHHH
Confidence 88999987 79987655544
No 497
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=62.45 E-value=15 Score=34.84 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--cCCCEEEec
Q 023442 67 VSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR--KGAHHVMVG 142 (282)
Q Consensus 67 ~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIG 142 (282)
...+.|+|+|.++ -|+.. +...++++..+. .+++||+ -|.|.+-+..+-+ .-+|||||+
T Consensus 184 fa~~~~vD~IalSFVrsa~---------------dV~~lr~~l~~~~~~~~iia--KIE~~~~v~nl~eI~~~sDgimia 246 (348)
T PF00224_consen 184 FAVENGVDFIALSFVRSAE---------------DVKELRKILGEKGKDIKIIA--KIETKEAVENLDEILEASDGIMIA 246 (348)
T ss_dssp HHHHTT-SEEEETTE-SHH---------------HHHHHHHHHTCTTTTSEEEE--EE-SHHHHHTHHHHHHHSSEEEEE
T ss_pred HHHHcCCCEEEecCCCchH---------------HHHHHHHHhhhcCcccceee--ccccHHHHhhHHHHhhhcCeEEEe
Confidence 3457899999997 55421 134455555442 4678875 5777776665555 468999999
Q ss_pred HHhhhC
Q 023442 143 RAAYQN 148 (282)
Q Consensus 143 Rgal~n 148 (282)
||=|+-
T Consensus 247 RGDLg~ 252 (348)
T PF00224_consen 247 RGDLGV 252 (348)
T ss_dssp HHHHHH
T ss_pred cCCcce
Confidence 998664
No 498
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.95 E-value=31 Score=31.90 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCEEEEecCCc----------------ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE--ccC---
Q 023442 64 IYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL--NGG--- 121 (282)
Q Consensus 64 v~~~le~~Gv~~i~VH~Rt~----------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~--nGd--- 121 (282)
.++.+.++|+|.|.+|+-.. .|.|. ..++ ...-.+.+.++.+.. .++||.. |.+
T Consensus 146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs--~enr--~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGS--LENR--ARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCC--HHHH--HHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 35567789999999996321 12221 1111 000123344444433 3567653 421
Q ss_pred --CCCHHHHHHHHH----cCCCEEEecHHhhhCC
Q 023442 122 --INTVDEVNAALR----KGAHHVMVGRAAYQNP 149 (282)
Q Consensus 122 --I~s~eda~~~l~----~g~DgVmIGRgal~nP 149 (282)
-.+.+++.++.+ .|+|.|-+..+...+|
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~ 255 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESP 255 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccc
Confidence 146777655443 7999998877665544
No 499
>PRK07094 biotin synthase; Provisional
Probab=61.69 E-value=65 Score=29.75 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH-HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc
Q 023442 56 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 134 (282)
Q Consensus 56 ~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~-~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~ 134 (282)
+.+++.+.+ +.+.+.|+..+.+.+.+... . ..+ .+ +.+..+.+. +++.+..+-+..+.+.+..+.+.
T Consensus 71 s~eei~~~~-~~~~~~g~~~i~l~gG~~~~--~-~~~-------~l~~l~~~i~~~-~~l~i~~~~g~~~~e~l~~Lk~a 138 (323)
T PRK07094 71 SPEEILECA-KKAYELGYRTIVLQSGEDPY--Y-TDE-------KIADIIKEIKKE-LDVAITLSLGERSYEEYKAWKEA 138 (323)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEecCCCCC--C-CHH-------HHHHHHHHHHcc-CCceEEEecCCCCHHHHHHHHHc
Confidence 455666654 34567899999888643110 0 000 12 223344333 56777667677789999888889
Q ss_pred CCCEEEec
Q 023442 135 GAHHVMVG 142 (282)
Q Consensus 135 g~DgVmIG 142 (282)
|+|.|.+|
T Consensus 139 G~~~v~~g 146 (323)
T PRK07094 139 GADRYLLR 146 (323)
T ss_pred CCCEEEec
Confidence 99999986
No 500
>PLN02417 dihydrodipicolinate synthase
Probab=61.57 E-value=74 Score=29.01 Aligned_cols=112 Identities=7% Similarity=-0.079 Sum_probs=58.8
Q ss_pred ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442 2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 79 (282)
Q Consensus 2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH 79 (282)
+..||.- +.=.|..|-...-..+.-.++++.+.+.+ ++||.+-+- -. +..+.++ .++.++++|+|++.++
T Consensus 32 ~~~Gv~G--i~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~--~~---~t~~~i~-~a~~a~~~Gadav~~~ 103 (280)
T PLN02417 32 IENGAEG--LIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG--SN---STREAIH-ATEQGFAVGMHAALHI 103 (280)
T ss_pred HHcCCCE--EEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC--Cc---cHHHHHH-HHHHHHHcCCCEEEEc
Confidence 3456643 32223335444445555566777666554 478876542 11 2334444 3566789999999998
Q ss_pred cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442 80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR 133 (282)
Q Consensus 80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~ 133 (282)
.-. |...+ + + .-.+++.++++. . ||+ . .|--.+++.+.++.+
T Consensus 104 ~P~--y~~~~--~-~----~i~~~f~~va~~--~-pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 104 NPY--YGKTS--Q-E----GLIKHFETVLDM--G-PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred CCc--cCCCC--H-H----HHHHHHHHHHhh--C-CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 642 11111 0 0 014455555553 2 664 2 344456777776664
Done!