RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023442
(282 letters)
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 74.3 bits (181), Expect = 5e-16
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
+ CP+ K G DP+ + A + VP+ VK V D +
Sbjct: 130 ELNISCPNVKHGGQAF-----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKA 184
Query: 61 C-----DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 115
D + +++L R + + L N I P+ + + + +D +
Sbjct: 185 VEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD-IP 243
Query: 116 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150
GG+ +V GA V VG A + +P+
Sbjct: 244 IIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 58.1 bits (139), Expect = 2e-10
Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 24/232 (10%)
Query: 4 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
GCP KV G G L D + + + + + SVK R+G + ++
Sbjct: 87 AGCPVRKVVKEGAGGALLK-DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRIL 145
Query: 64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
+ IH+R + + + AL + ++G I
Sbjct: 146 VE-----EGVDEVFIHTRTVVQS-----------FTGRAEWKALSVLEKRIPTFVSGDIF 189
Query: 124 TVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
T ++ AL + G ++V R A PW + + S +R +++ ++ + +
Sbjct: 190 TPEDAKRALEESGCDGLLVARGAIGRPW-IFKQIKDFLRSGKYSEPSREEILRTFERHLE 248
Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234
++ T G R V ++ K L + G F+ K + V+ E
Sbjct: 249 LLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREK----VMKIEEVQILKE 295
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 52.3 bits (124), Expect = 2e-08
Identities = 25/162 (15%), Positives = 41/162 (25%), Gaps = 12/162 (7%)
Query: 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
P G G++ DP+ V + +P K V D S +
Sbjct: 132 ALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARA 191
Query: 61 C-----------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 109
+ + + L I P+ + R
Sbjct: 192 AKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIAR 251
Query: 110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 150
P GGI++ + L GA + V A Q+
Sbjct: 252 ALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT 293
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 43.4 bits (101), Expect = 1e-05
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 2/136 (1%)
Query: 16 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTR 74
+G +F E + + + R+ + D + + ++
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAG 241
Query: 75 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 134
II++ P +P + + L+ L IN + L +
Sbjct: 242 ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301
Query: 135 G-AHHVMVGRAAYQNP 149
G A V + R +
Sbjct: 302 GDADMVSMARPFLADA 317
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 40.0 bits (92), Expect = 2e-04
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 5/154 (3%)
Query: 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
+P +G SL +F E + + ++ R GVD Q+
Sbjct: 175 LPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQI 234
Query: 61 CDFIYKVSSLSPTRHFI----IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 116
+ + + I G +R + L++
Sbjct: 235 EAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPV 294
Query: 117 TLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 149
G +++ + KG A + R + +P
Sbjct: 295 LGVGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 34.8 bits (79), Expect = 0.006
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 118 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150
G + T D + G H +VG A P
Sbjct: 180 AEGNVITPDMYKRVMDLGVHCSVVGG-AITRPK 211
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 34.4 bits (78), Expect = 0.008
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144
+ G I++ +E G ++VG A
Sbjct: 179 LCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGA 214
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 32.0 bits (72), Expect = 0.052
Identities = 15/137 (10%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
Query: 16 CFGVSLMLDPKFVGEA--MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT 73
++ + +A + V + + + + + + + +++ +
Sbjct: 106 ILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDEN-D 164
Query: 74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAAL 132
+ A GI+ + + E L+ P ++ GI+ +E+
Sbjct: 165 LDIALRI-GARFIGINSR-DLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELR 222
Query: 133 RKGAHHVMVGRAAYQNP 149
+ G + ++G + +NP
Sbjct: 223 KLGVNAFLIGSSLMRNP 239
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus
subtilis [TaxId: 1423]}
Length = 128
Score = 30.4 bits (69), Expect = 0.095
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 101 YEYYYALLRDFPDLTFTLNGGI---NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 157
Y+ L++ ++T +NG + + + A R G +V + P + D
Sbjct: 49 YKEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAAD 108
Query: 158 TAI 160
A+
Sbjct: 109 IAV 111
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 31.4 bits (70), Expect = 0.11
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 52 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF 111
++ N +Y V SL+ H + P ++ +R
Sbjct: 238 NEAGDTNPTALGLYMVESLNKYDLAYCHV-------VEPRMKTAWEKIECTESLVPMRKA 290
Query: 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149
TF + GG + D A + A V GR NP
Sbjct: 291 YKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNP 328
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 31.3 bits (70), Expect = 0.11
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 148
++ + + +GG ++ A + GA + +
Sbjct: 183 DLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 230
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 31.4 bits (70), Expect = 0.13
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 145
L ++GG+ +V AL GA V +GR
Sbjct: 304 KDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPF 338
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 31.3 bits (70), Expect = 0.15
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEP 210
I+G Y + ++++ L FH E
Sbjct: 448 IVGEYAERIDNADELLESFLEGFHDES 474
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 31.0 bits (69), Expect = 0.17
Identities = 16/138 (11%), Positives = 28/138 (20%), Gaps = 7/138 (5%)
Query: 13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 72
+G S+ +F E + +A +
Sbjct: 201 RTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGE 260
Query: 73 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 132
+ + + E + +R G + A L
Sbjct: 261 LDRRGLAYL-----HFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDA-GRAQARL 314
Query: 133 RKG-AHHVMVGRAAYQNP 149
A V GR NP
Sbjct: 315 DDNTADAVAFGRPFIANP 332
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 30.3 bits (67), Expect = 0.25
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144
+ L+GG+ +V AL GA V +GR
Sbjct: 277 QGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRP 310
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 29.5 bits (65), Expect = 0.46
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 93 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144
+ + + ++GG+ T +V AL GA + +GR
Sbjct: 252 LDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRP 303
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 29.2 bits (64), Expect = 0.48
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 150
P++ GGI T + L GA + +G A + P
Sbjct: 241 PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPA 280
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 29.1 bits (64), Expect = 0.58
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 53 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE-NRTIPPLKYEYYYALLRDF 111
+ + K+ ++ ++ +H + + E R + LR
Sbjct: 246 PLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMA 305
Query: 112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 149
+ TF +GG N + A + A V GR NP
Sbjct: 306 YNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANP 343
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 29.1 bits (64), Expect = 0.62
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Query: 38 NTNVPVSVKCRIGVDDHDSYNQL----CDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 93
PV VK ++ L + + + + +
Sbjct: 157 PLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCE 216
Query: 94 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 147
IP + + L +GG+ T + AL GA + V R +
Sbjct: 217 IGIPTARAILEVREVLPHLPLVA--SGGVYTGTDGAKALALGADLLAVARPLLR 268
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 28.7 bits (63), Expect = 0.70
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 5/144 (3%)
Query: 6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 65
P V F V + V + I+
Sbjct: 93 PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIF 152
Query: 66 KVSSLSPTRHFII-----HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 120
+ LL+ L + L+++
Sbjct: 153 ICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGF 212
Query: 121 GINTVDEVNAALRKGAHHVMVGRA 144
GI++ ++V+AA+R GA + G A
Sbjct: 213 GISSPEQVSAAVRAGAAGAISGSA 236
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 29.0 bits (65), Expect = 0.73
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGL-----TRRQV 173
+ + AA ++GA + V R Q+ +D YGA + G T+
Sbjct: 166 ITQAVAAAKQGADVIAVIRTTGQS------LLDYVPYGATTEGFGGTYATQENF 213
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 102
Score = 27.0 bits (60), Expect = 1.1
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 79
MLD + + PV + +DD ++ + + +++ LS F
Sbjct: 1 MLDTN-MKTQLRAYLEKLTKPVELIAT--LDDSAKSAEIKELLAEIAELSDKVTFKED 55
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 28.0 bits (61), Expect = 1.3
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 144
++ G ++ AL GA V++GRA
Sbjct: 271 VAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRA 306
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 27.8 bits (61), Expect = 1.5
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 15/126 (11%)
Query: 25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RK 82
F +A+ V V ++ L D++ +V ++ S R
Sbjct: 118 QTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGE-ILLTSIDRD 176
Query: 83 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 142
+G R + PL A +GG ++ A GA +
Sbjct: 177 GTKSGYDTEMIRFVRPLTTLPIIA------------SGGAGKMEHFLEAFLAGADAALAA 224
Query: 143 RAAYQN 148
+
Sbjct: 225 SVFHFR 230
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 27.5 bits (60), Expect = 1.6
Identities = 15/149 (10%), Positives = 39/149 (26%), Gaps = 5/149 (3%)
Query: 1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
+ + + + VP ++ N
Sbjct: 83 EMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNN 142
Query: 61 CDFIYKVSSLSPTRHFIIHSRKA-----LLNGISPAENRTIPPLKYEYYYALLRDFPDLT 115
+ + + P ++ + L++ R + E ++ +
Sbjct: 143 LELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKP 202
Query: 116 FTLNGGINTVDEVNAALRKGAHHVMVGRA 144
+ GI+ + V + GA V++G A
Sbjct: 203 VAVGFGISKPEHVKQIAQWGADGVIIGSA 231
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 27.6 bits (60), Expect = 1.6
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNP 149
P A R PD GG+ + +E + GA V VG A + P
Sbjct: 227 PTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGP 279
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 27.2 bits (59), Expect = 2.3
Identities = 16/108 (14%), Positives = 24/108 (22%), Gaps = 7/108 (6%)
Query: 47 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 106
+ + + Y L + R A ++ + P Y
Sbjct: 249 VFNSMSGGAETGIVAQYAYVAGELE--KRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEG 306
Query: 107 LLRDF----PDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 149
DF G EV K + GR NP
Sbjct: 307 GSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNP 354
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (56), Expect = 2.4
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 107 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSS 166
L R L F++ GG + K V AA ++ G A+ G
Sbjct: 8 LERGPDGLGFSIVGGYGSPHGDLPIYVK---TVFAKGAASEDGRLKRGDQIIAVNGQSLE 64
Query: 167 GLTRRQVVE 175
G+T + V
Sbjct: 65 GVTHEEAVA 73
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 126 DEVNAALRKGAHHVMVGRAAYQNP 149
V A+ GA + GRA + +
Sbjct: 236 RAVRVAMEAGASGFLAGRAVWSSV 259
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 26.7 bits (58), Expect = 2.8
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 84 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 143
L++ R P + + G++ + V + L++GA+ V+VG
Sbjct: 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS 221
Query: 144 A 144
A
Sbjct: 222 A 222
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 25.6 bits (56), Expect = 3.9
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 81
++ + PV + + D +QL + ++S L+ + I
Sbjct: 3 LISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDF 62
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.9 bits (56), Expect = 4.8
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 120 GGINTVDEVNAALRKGAHHVMVGRAAYQNP 149
G ++++ H + GR+
Sbjct: 167 TGGLALEDLPLFKGIPIHVFIAGRSIRDAA 196
>d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388
{Porphyromonas gingivalis [TaxId: 837]}
Length = 197
Score = 25.6 bits (56), Expect = 5.3
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 233 LEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAR 274
LE +A+P+SVL E R DL L + A
Sbjct: 4 LERCFLAMPESVLPIVTMEE---RNDLCRRAGHLSGFTHTAS 42
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 25.8 bits (56), Expect = 6.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 124 TVDEVNAALRKGAHHVMVGRAAYQNP 149
+ +V L GA + VGR +Q
Sbjct: 211 FLKQVEGVLEAGALGIAVGRNVWQRR 236
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 25.7 bits (55), Expect = 8.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 120 GGINTVDEVNAALRKGAHHVMVGRA-AYQNPW 150
GGI++V + GA V + ++ P
Sbjct: 296 GGIDSVIAAREKIAAGASLVQIYSGFIFKGPP 327
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 25.3 bits (54), Expect = 8.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 120 GGINTVDEVNAALRKGAHHVMVGRA-AYQNP 149
GG+++ + +R GA V + A + P
Sbjct: 305 GGVSSGQDALEKIRAGASLVQLYTALTFWGP 335
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,104,549
Number of extensions: 51471
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 43
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)