Your job contains 1 sequence.
>023443
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM
PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL
LDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEV
PNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD
SGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023443
(282 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2024316 - symbol:U2A' "U2 small nuclear ribonu... 650 9.7e-64 1
ZFIN|ZDB-GENE-041114-82 - symbol:snrpa1 "small nuclear ri... 301 4.0e-37 2
UNIPROTKB|F1NAC8 - symbol:SNRPA1 "Uncharacterized protein... 309 6.4e-37 2
UNIPROTKB|A6H788 - symbol:SNRPA1 "Uncharacterized protein... 304 2.7e-36 2
UNIPROTKB|E2QWU2 - symbol:SNRPA1 "Uncharacterized protein... 304 3.5e-36 2
UNIPROTKB|P09661 - symbol:SNRPA1 "U2 small nuclear ribonu... 304 3.5e-36 2
UNIPROTKB|F1RWS8 - symbol:SNRPA1 "Uncharacterized protein... 304 3.5e-36 2
MGI|MGI:1916231 - symbol:Snrpa1 "small nuclear ribonucleo... 304 3.1e-35 2
RGD|2320415 - symbol:LOC100364748 "U2 small nuclear ribon... 304 6.3e-35 2
RGD|2320494 - symbol:Snrpa1 "small nuclear ribonucleoprot... 304 6.3e-35 2
DICTYBASE|DDB_G0284101 - symbol:snrpA1 "U2 small nuclear ... 336 1.0e-34 2
FB|FBgn0033210 - symbol:U2A "U2A" species:7227 "Drosophil... 293 4.3e-32 2
WB|WBGene00003390 - symbol:mog-2 species:6239 "Caenorhabd... 287 1.6e-30 2
UNIPROTKB|Q9BLB6 - symbol:sap-1 "Probable U2 small nuclea... 287 1.6e-30 2
UNIPROTKB|H0YKK0 - symbol:SNRPA1 "Small nuclear ribonucle... 304 4.5e-27 1
POMBASE|SPBC1861.08c - symbol:lea1 "U2 snRNP-associated p... 276 4.2e-24 1
CGD|CAL0002983 - symbol:LEA1 species:5476 "Candida albica... 111 3.8e-13 3
UNIPROTKB|Q5A449 - symbol:LEA1 "U2 small nuclear ribonucl... 111 3.8e-13 3
>TAIR|locus:2024316 [details] [associations]
symbol:U2A' "U2 small nuclear ribonucleoprotein A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009409 "response to cold" evidence=IEP]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=RCA;IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030
"Cajal body" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA methylation"
evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0009507 GO:GO:0005730 GO:GO:0009409 eggNOG:COG4886
GO:GO:0003723 GO:GO:0030529 GO:GO:0015030 InterPro:IPR003603
SMART:SM00446 GO:GO:0000398 UniGene:At.48174 EMBL:AC000132
EMBL:X69137 EMBL:AY059902 EMBL:BT000143 EMBL:Z18200 IPI:IPI00534595
PIR:E86231 PIR:S30580 RefSeq:NP_172447.1 UniGene:At.71087
ProteinModelPortal:P43333 SMR:P43333 IntAct:P43333 STRING:P43333
PaxDb:P43333 PRIDE:P43333 EnsemblPlants:AT1G09760.1 GeneID:837505
KEGG:ath:AT1G09760 GeneFarm:4535 TAIR:At1g09760
HOGENOM:HOG000175472 InParanoid:P43333 KO:K11092 OMA:SMQYINP
PhylomeDB:P43333 ProtClustDB:CLSN2679500 Genevestigator:P43333
GermOnline:AT1G09760 Uniprot:P43333
Length = 249
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 139/238 (58%), Positives = 152/238 (63%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN
Sbjct: 1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P+ EFLPK EIDPL S+PKLQ+LSL
Sbjct: 61 PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXX 180
LDN+ITKK NYRLYVIHKLKSLRVLDF K +
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVK 180
Query: 181 XXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPD 238
+TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L IPD
Sbjct: 181 KVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPD 238
>ZFIN|ZDB-GENE-041114-82 [details] [associations]
symbol:snrpa1 "small nuclear ribonucleoprotein
polypeptide A'" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 ZFIN:ZDB-GENE-041114-82 InterPro:IPR003603
SMART:SM00446 KO:K11092 GeneTree:ENSGT00510000047131 CTD:6627
EMBL:CU856378 IPI:IPI00992962 RefSeq:NP_001007384.2
UniGene:Dr.14067 Ensembl:ENSDART00000128530 GeneID:492511
KEGG:dre:492511 NextBio:20865071 Bgee:F1R300 Uniprot:F1R300
Length = 277
Score = 301 (111.0 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 65/149 (43%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + N +++RELDLRG KI V+ENLGAT DQFDTIDLSDNE+ KL+
Sbjct: 1 MVKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEVRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL ++ L LSL
Sbjct: 61 PLLKRLKTLLVNNNRICRIGENLEQALPDLKELILTSNNIQELGDLDPLATVKSLSLLSL 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVINKIPQIRVLDFQK 149
Score = 114 (45.2 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 190 QTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKE 248
QT K P+ ++ AIK AI N+ +L EV RL+ +L++GQ+P DL+ +G+ +E
Sbjct: 188 QTEKKTGPSAAEVEAIKNAIANATSLAEVERLKGLLQAGQIPGRDLRS---GAGNMVEEE 244
Query: 249 NDEKMVPDVENEADVEPNNVENQKNDEL 276
+E+M V D++ N + +E+
Sbjct: 245 EEEEMSESVPMFEDMQGENNDEDMQEEM 272
>UNIPROTKB|F1NAC8 [details] [associations]
symbol:SNRPA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 InterPro:IPR003603
SMART:SM00446 GO:GO:0071013 OMA:SMQYINP
GeneTree:ENSGT00510000047131 EMBL:AADN02038950 EMBL:AADN02038949
IPI:IPI00575703 Ensembl:ENSGALT00000011612 Uniprot:F1NAC8
Length = 255
Score = 309 (113.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 67/149 (44%), Positives = 88/149 (59%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP E+DPL+S+ L +LS+
Sbjct: 61 PLLRRLKTLLMNNNRICRIGEGLEQALPSLTELVLTNNNISELGELDPLSSIKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 104 (41.7 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 193 KVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEN-DE 251
K P+P + AIK AI N+ TL EV RL+ +L++GQ+P + P ++D +E +E
Sbjct: 192 KKAGPSPGDVEAIKTAIANASTLAEVERLKGLLQAGQIPGRERKP---GSAEDAEEEMEE 248
Query: 252 KMVP 255
VP
Sbjct: 249 DTVP 252
>UNIPROTKB|A6H788 [details] [associations]
symbol:SNRPA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 eggNOG:COG4886
InterPro:IPR003603 SMART:SM00446 GO:GO:0071013 HOGENOM:HOG000175472
KO:K11092 OMA:SMQYINP GeneTree:ENSGT00510000047131 CTD:6627
HOVERGEN:HBG007330 OrthoDB:EOG4BG8WS EMBL:DAAA02052392
EMBL:BC146154 IPI:IPI00711352 RefSeq:NP_001092418.1
UniGene:Bt.55373 SMR:A6H788 STRING:A6H788
Ensembl:ENSBTAT00000018076 GeneID:512584 KEGG:bta:512584
InParanoid:A6H788 NextBio:20870458 Uniprot:A6H788
Length = 255
Score = 304 (112.1 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 103 (41.3 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEN 249
P+P + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G ++++E+
Sbjct: 196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRAGPTDDGEEEMEED 249
>UNIPROTKB|E2QWU2 [details] [associations]
symbol:SNRPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 InterPro:IPR003603
SMART:SM00446 GO:GO:0071013 KO:K11092 OMA:SMQYINP
GeneTree:ENSGT00510000047131 CTD:6627 EMBL:AAEX03002243
RefSeq:XP_848923.1 ProteinModelPortal:E2QWU2 SMR:E2QWU2
PRIDE:E2QWU2 Ensembl:ENSCAFT00000016796 GeneID:607102
KEGG:cfa:607102 NextBio:20892850 Uniprot:E2QWU2
Length = 255
Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 102 (41.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEN 249
P+P + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G ++++E+
Sbjct: 196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEED 249
>UNIPROTKB|P09661 [details] [associations]
symbol:SNRPA1 "U2 small nuclear ribonucleoprotein A'"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS]
[GO:0005686 "U2 snRNP" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001611 PROSITE:PS51450 GO:GO:0005654
Reactome:REACT_1675 eggNOG:COG4886 GO:GO:0003723 EMBL:CH471101
InterPro:IPR003603 SMART:SM00446 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 HOGENOM:HOG000175472 KO:K11092 OMA:SMQYINP
EMBL:X13482 EMBL:AK312200 EMBL:BC022816 EMBL:BC071717
IPI:IPI00297477 PIR:S03616 RefSeq:NP_003081.2 UniGene:Hs.528763
PDB:1A9N PDBsum:1A9N ProteinModelPortal:P09661 SMR:P09661
DIP:DIP-625N IntAct:P09661 MINT:MINT-3007227 STRING:P09661
PhosphoSite:P09661 DMDM:31077165 PaxDb:P09661 PeptideAtlas:P09661
PRIDE:P09661 DNASU:6627 Ensembl:ENST00000254193 GeneID:6627
KEGG:hsa:6627 UCSC:uc002bww.3 CTD:6627 GeneCards:GC15M101821
H-InvDB:HIX0203213 HGNC:HGNC:11152 MIM:603521 neXtProt:NX_P09661
PharmGKB:PA35994 HOVERGEN:HBG007330 InParanoid:P09661
OrthoDB:EOG4BG8WS PhylomeDB:P09661 EvolutionaryTrace:P09661
GenomeRNAi:6627 NextBio:25813 ArrayExpress:P09661 Bgee:P09661
CleanEx:HS_SNRPA1 Genevestigator:P09661 GermOnline:ENSG00000131876
Uniprot:P09661
Length = 255
Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 102 (41.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEN 249
P+P + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G ++++E+
Sbjct: 196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEED 249
>UNIPROTKB|F1RWS8 [details] [associations]
symbol:SNRPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 InterPro:IPR003603 SMART:SM00446
GO:GO:0071013 KO:K11092 OMA:SMQYINP GeneTree:ENSGT00510000047131
CTD:6627 EMBL:CU633378 RefSeq:XP_001925384.4 UniGene:Ssc.14146
Ensembl:ENSSSCT00000006362 GeneID:100156573 KEGG:ssc:100156573
Uniprot:F1RWS8
Length = 255
Score = 304 (112.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 102 (41.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEN 249
P+P + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G ++++E+
Sbjct: 196 PSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEED 249
>MGI|MGI:1916231 [details] [associations]
symbol:Snrpa1 "small nuclear ribonucleoprotein polypeptide
A'" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR001611 PROSITE:PS51450 MGI:MGI:1916231
GO:GO:0008380 GO:GO:0006397 eggNOG:COG4886 GO:GO:0003723
InterPro:IPR003603 SMART:SM00446 GO:GO:0071013 HOGENOM:HOG000175472
KO:K11092 OMA:SMQYINP GeneTree:ENSGT00510000047131 CTD:6627
HOVERGEN:HBG007330 OrthoDB:EOG4BG8WS EMBL:AF230356 EMBL:BC013777
EMBL:BC029642 EMBL:AK088438 EMBL:AK151800 EMBL:AK152546
EMBL:AK153502 IPI:IPI00170008 RefSeq:NP_067311.4 UniGene:Mm.22362
ProteinModelPortal:P57784 SMR:P57784 STRING:P57784
PhosphoSite:P57784 PaxDb:P57784 PRIDE:P57784
Ensembl:ENSMUST00000153609 GeneID:68981 KEGG:mmu:68981
UCSC:uc009hgy.2 InParanoid:P57784 NextBio:328347 Bgee:P57784
CleanEx:MM_SNRPA1 Genevestigator:P57784
GermOnline:ENSMUSG00000030512 Uniprot:P57784
Length = 255
Score = 304 (112.1 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 93 (37.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEN 249
P+ + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G ++++++
Sbjct: 196 PSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPSDEGEEEIEDD 249
>RGD|2320415 [details] [associations]
symbol:LOC100364748 "U2 small nuclear ribonucleoprotein
polypeptide A-like" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 RGD:2320415 RGD:2320494 InterPro:IPR003603
SMART:SM00446 GO:GO:0071013 KO:K11092 OMA:SMQYINP
GeneTree:ENSGT00510000047131 CTD:6627 IPI:IPI00192279
RefSeq:NP_001258252.1 UniGene:Rn.38265 PRIDE:D3ZZR5
Ensembl:ENSRNOT00000016758 GeneID:100361269 KEGG:rno:100361269
UCSC:RGD:2320494 ArrayExpress:D3ZZR5 Uniprot:D3ZZR5
Length = 255
Score = 304 (112.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 90 (36.7 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKE 248
P+ + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G +++++
Sbjct: 196 PSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPSDEGEEEMED 248
>RGD|2320494 [details] [associations]
symbol:Snrpa1 "small nuclear ribonucleoprotein polypeptide A'"
species:10116 "Rattus norvegicus" [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR001611 PROSITE:PS51450 RGD:2320415
RGD:2320494 InterPro:IPR003603 SMART:SM00446 GO:GO:0071013
KO:K11092 OMA:SMQYINP GeneTree:ENSGT00510000047131 CTD:6627
IPI:IPI00192279 RefSeq:NP_001258252.1 UniGene:Rn.38265 PRIDE:D3ZZR5
Ensembl:ENSRNOT00000016758 GeneID:100361269 KEGG:rno:100361269
UCSC:RGD:2320494 ArrayExpress:D3ZZR5 Uniprot:D3ZZR5
Length = 255
Score = 304 (112.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Score = 90 (36.7 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 197 PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKE 248
P+ + AIK AI N+ TL EV RL+ +L+SGQ+P + + D G +++++
Sbjct: 196 PSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPSDEGEEEMED 248
>DICTYBASE|DDB_G0284101 [details] [associations]
symbol:snrpA1 "U2 small nuclear ribonucleoprotein A'"
species:44689 "Dictyostelium discoideum" [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001611 PROSITE:PS51450
dictyBase:DDB_G0284101 GenomeReviews:CM000153_GR eggNOG:COG4886
EMBL:AAFI02000063 InterPro:IPR003603 SMART:SM00446 KO:K11092
OMA:KPTHILD RefSeq:XP_638751.1 ProteinModelPortal:Q54Q46 SMR:Q54Q46
STRING:Q54Q46 EnsemblProtists:DDB0233176 GeneID:8624421
KEGG:ddi:DDB_G0284101 InParanoid:Q54Q46 ProtClustDB:CLSZ2728949
Uniprot:Q54Q46
Length = 244
Score = 336 (123.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 67/148 (45%), Positives = 92/148 (62%)
Query: 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
+RLTA+LI KSP + N K+REL+LRGNKI+ IENLGAT++QFDTID SDNEI K+EN P
Sbjct: 1 MRLTAELILKSPDYINPCKDRELNLRGNKISSIENLGATKNQFDTIDFSDNEISKVENFP 60
Query: 62 HXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSLL 121
LP +++PLT L +++F+SLL
Sbjct: 61 KLERVKTLLFNNNHIKSFEEDFGSSLPHLRALILSNNRINNLSDLEPLTKLSEIKFISLL 120
Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKK 149
+N ++KKPNYRLY+IH + L+++DF+K
Sbjct: 121 ENPVSKKPNYRLYLIHLVPHLKIIDFRK 148
Score = 56 (24.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 191 TPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQL 230
TP V T E+ +I+ I N++T+EE+ LE L++G +
Sbjct: 206 TP-VKKLTEEEKKSIRLQIDNAKTMEEINILEAKLRTGDI 244
>FB|FBgn0033210 [details] [associations]
symbol:U2A "U2A" species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0007067 "mitosis" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] InterPro:IPR001611
PROSITE:PS51450 EMBL:AE013599 GO:GO:0007067 GO:GO:0007052
eggNOG:COG4886 GO:GO:0003723 InterPro:IPR003603 SMART:SM00446
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0005686 KO:K11092
OMA:SMQYINP GeneTree:ENSGT00510000047131 EMBL:AY071516
RefSeq:NP_610315.1 UniGene:Dm.14227 ProteinModelPortal:Q9V4Q8
SMR:Q9V4Q8 STRING:Q9V4Q8 PaxDb:Q9V4Q8 PRIDE:Q9V4Q8
EnsemblMetazoa:FBtr0088941 GeneID:35713 KEGG:dme:Dmel_CG1406
UCSC:CG1406-RA CTD:35713 FlyBase:FBgn0033210 InParanoid:Q9V4Q8
OrthoDB:EOG49KD6N PhylomeDB:Q9V4Q8 GenomeRNAi:35713 NextBio:794870
Bgee:Q9V4Q8 GermOnline:CG1406 Uniprot:Q9V4Q8
Length = 265
Score = 293 (108.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 63/149 (42%), Positives = 84/149 (56%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LT +LI +S + N +ERELDLRG KI IENLGAT DQFDTIDLSDN++ KL+N+
Sbjct: 1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNL 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
PH E +P +++PL KL+ + L
Sbjct: 61 PHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICL 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N ++ KPNYR Y+ +K LR+LDF+K
Sbjct: 121 LINPVSTKPNYREYMAYKFPQLRLLDFRK 149
Score = 74 (31.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 199 PEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
P+ + I+ AI + +L EV RL ++L+SGQLP
Sbjct: 206 PQDMQRIREAIKRASSLAEVERLSQILQSGQLP 238
>WB|WBGene00003390 [details] [associations]
symbol:mog-2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040022 "feminization
of hermaphroditic germ-line" evidence=IMP] [GO:0051729 "germline
cell cycle switching, mitotic to meiotic cell cycle" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0000389 "mRNA 3'-splice site recognition" evidence=IMP]
InterPro:IPR001611 PROSITE:PS51450 GO:GO:0009792 eggNOG:COG4886
GO:GO:0051729 GO:GO:0007281 InterPro:IPR003603 SMART:SM00446
InterPro:IPR025875 Pfam:PF12799 GO:GO:0040022 GO:GO:0005686
GO:GO:0030620 EMBL:FO080156 HOGENOM:HOG000175472 KO:K11092
OMA:SMQYINP RefSeq:NP_494763.1 UniGene:Cel.6629
ProteinModelPortal:Q9BLB6 SMR:Q9BLB6 IntAct:Q9BLB6 STRING:Q9BLB6
PaxDb:Q9BLB6 EnsemblMetazoa:H20J04.8.1 EnsemblMetazoa:H20J04.8.2
GeneID:173767 KEGG:cel:CELE_H20J04.8 UCSC:H20J04.8.1 CTD:173767
WormBase:H20J04.8 GeneTree:ENSGT00510000047131 InParanoid:Q9BLB6
NextBio:881005 ArrayExpress:Q9BLB6 Uniprot:Q9BLB6
Length = 253
Score = 287 (106.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 59/151 (39%), Positives = 83/151 (54%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MVRLT +L + P F N++ RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N
Sbjct: 1 MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P LP +I+PL KL++++
Sbjct: 61 PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151
+ N IT K NYR+Y+I+KL ++RV+DF + R
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVR 151
Score = 65 (27.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
T E IK AI N+++L EV L+ +L SG++P
Sbjct: 200 TDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233
>UNIPROTKB|Q9BLB6 [details] [associations]
symbol:sap-1 "Probable U2 small nuclear ribonucleoprotein
A'" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001611 PROSITE:PS51450
GO:GO:0009792 eggNOG:COG4886 GO:GO:0051729 GO:GO:0007281
InterPro:IPR003603 SMART:SM00446 InterPro:IPR025875 Pfam:PF12799
GO:GO:0040022 GO:GO:0005686 GO:GO:0030620 EMBL:FO080156
HOGENOM:HOG000175472 KO:K11092 OMA:SMQYINP RefSeq:NP_494763.1
UniGene:Cel.6629 ProteinModelPortal:Q9BLB6 SMR:Q9BLB6 IntAct:Q9BLB6
STRING:Q9BLB6 PaxDb:Q9BLB6 EnsemblMetazoa:H20J04.8.1
EnsemblMetazoa:H20J04.8.2 GeneID:173767 KEGG:cel:CELE_H20J04.8
UCSC:H20J04.8.1 CTD:173767 WormBase:H20J04.8
GeneTree:ENSGT00510000047131 InParanoid:Q9BLB6 NextBio:881005
ArrayExpress:Q9BLB6 Uniprot:Q9BLB6
Length = 253
Score = 287 (106.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 59/151 (39%), Positives = 83/151 (54%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MVRLT +L + P F N++ RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N
Sbjct: 1 MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P LP +I+PL KL++++
Sbjct: 61 PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151
+ N IT K NYR+Y+I+KL ++RV+DF + R
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVR 151
Score = 65 (27.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
T E IK AI N+++L EV L+ +L SG++P
Sbjct: 200 TDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233
>UNIPROTKB|H0YKK0 [details] [associations]
symbol:SNRPA1 "Small nuclear ribonucleoprotein polypeptide
A', isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 GO:GO:0003676
GO:GO:0030529 EMBL:CH471101 InterPro:IPR003603 SMART:SM00446
UniGene:Hs.528763 HGNC:HGNC:11152 EMBL:AC023024
ProteinModelPortal:H0YKK0 SMR:H0YKK0 Ensembl:ENST00000559309
Bgee:H0YKK0 Uniprot:H0YKK0
Length = 154
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 67/149 (44%), Positives = 87/149 (58%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +LS+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
>POMBASE|SPBC1861.08c [details] [associations]
symbol:lea1 "U2 snRNP-associated protein Lea1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0043234
"protein complex" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
PomBase:SPBC1861.08c GO:GO:0005829 GO:GO:0043234 EMBL:CU329671
eggNOG:COG4886 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0005686 GO:GO:0045292 HOGENOM:HOG000175472 KO:K11092
OMA:SMQYINP EMBL:AB027844 PIR:T39747 RefSeq:NP_596725.1
ProteinModelPortal:Q9USX8 IntAct:Q9USX8 STRING:Q9USX8
GeneID:2539730 KEGG:spo:SPBC1861.08c OrthoDB:EOG4GF6QN
NextBio:20800881 Uniprot:Q9USX8
Length = 239
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 71/238 (29%), Positives = 107/238 (44%)
Query: 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
+RL A+ + + P F + +KE ELDLR +I +IENLG D D ID +DN+I L N P
Sbjct: 1 MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFP 60
Query: 62 HXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSLL 121
+ LP ++DPL S P+L LS +
Sbjct: 61 RMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCI 120
Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXXX 181
DN + +K YRLY+I ++ SL +LDF++ R ++M
Sbjct: 121 DNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMGVKSR 180
Query: 182 XXXXXXXQQT-PKVVAP-------TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231
Q+ P+ +P TPE+ IK AI N+ ++ E+ RLE +L G++P
Sbjct: 181 VFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAMLLEGKIP 238
>CGD|CAL0002983 [details] [associations]
symbol:LEA1 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
CGD:CAL0002983 GO:GO:0008380 GO:GO:0006397 eggNOG:COG4886
GO:GO:0005681 InterPro:IPR003603 SMART:SM00446 EMBL:AACQ01000068
EMBL:AACQ01000067 KO:K11092 RefSeq:XP_716513.1 RefSeq:XP_716568.1
ProteinModelPortal:Q5A449 STRING:Q5A449 GeneID:3641807
GeneID:3641868 KEGG:cal:CaO19.1260 KEGG:cal:CaO19.8845
Uniprot:Q5A449
Length = 233
Score = 111 (44.1 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
+RLTA +I ++P N + L LR +I +ENL T++++ IDLS+N+++ L N+P
Sbjct: 1 MRLTAQVINEAPEILNPEGKLTLLLRDLQITELENLAITQNKYQVIDLSNNDLISLGNIP 60
Score = 102 (41.0 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
PKL+ L LL N IT+ NYR ++I + SL+VLDFKK
Sbjct: 112 PKLETLILLGNPITEMENYRYFIIWLIPSLKVLDFKK 148
Score = 41 (19.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSG 228
T E+ + + + ++EE+ R+E LK G
Sbjct: 201 TDEERQQLLKKLETATSIEEIERIENDLKEG 231
Score = 36 (17.7 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN 59
K + +DL N + + N+ + + LS+N I +++
Sbjct: 42 KYQVIDLSNNDLISLGNIPKRFNNLQCLLLSNNNISYIDD 81
>UNIPROTKB|Q5A449 [details] [associations]
symbol:LEA1 "U2 small nuclear ribonucleoprotein A'"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 CGD:CAL0002983 GO:GO:0008380 GO:GO:0006397
eggNOG:COG4886 GO:GO:0005681 InterPro:IPR003603 SMART:SM00446
EMBL:AACQ01000068 EMBL:AACQ01000067 KO:K11092 RefSeq:XP_716513.1
RefSeq:XP_716568.1 ProteinModelPortal:Q5A449 STRING:Q5A449
GeneID:3641807 GeneID:3641868 KEGG:cal:CaO19.1260
KEGG:cal:CaO19.8845 Uniprot:Q5A449
Length = 233
Score = 111 (44.1 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
+RLTA +I ++P N + L LR +I +ENL T++++ IDLS+N+++ L N+P
Sbjct: 1 MRLTAQVINEAPEILNPEGKLTLLLRDLQITELENLAITQNKYQVIDLSNNDLISLGNIP 60
Score = 102 (41.0 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
PKL+ L LL N IT+ NYR ++I + SL+VLDFKK
Sbjct: 112 PKLETLILLGNPITEMENYRYFIIWLIPSLKVLDFKK 148
Score = 41 (19.5 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSG 228
T E+ + + + ++EE+ R+E LK G
Sbjct: 201 TDEERQQLLKKLETATSIEEIERIENDLKEG 231
Score = 36 (17.7 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN 59
K + +DL N + + N+ + + LS+N I +++
Sbjct: 42 KYQVIDLSNNDLISLGNIPKRFNNLQCLLLSNNNISYIDD 81
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.132 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 211 0.00081 112 3 11 23 0.44 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 557 (59 KB)
Total size of DFA: 145 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.15u 0.17s 19.32t Elapsed: 00:00:00
Total cpu time: 19.15u 0.17s 19.32t Elapsed: 00:00:00
Start: Fri May 10 03:12:56 2013 End: Fri May 10 03:12:56 2013