BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023443
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 86/149 (57%)
Query: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
MV+LTA+LI ++ + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
P + LP ++DPL SL L +L +
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
L N +T K +YRLYVI+K+ +RVLDF+K
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
>pdb|4GG4|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Specific Dna-Rna Hybrid
Length = 499
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + I Q LE V RL VL G P + + G K E ++++P
Sbjct: 265 TPQQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 324
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 325 VLCQAHGLTPQQV 337
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 163 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 222
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 223 VLCQAHGLTPQQV 235
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 367 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLL 425
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 426 PVLCQAHGLTPQQV 439
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 61 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLL 119
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 120 PVLCQAHGLTPEQV 133
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 333 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 392
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 393 VLCQAHGLTPEQV 405
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 231 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNIGGKQALETVQRLLP 290
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 291 VLCQAHGLTPQQV 303
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V L VL G P + + G K E ++++P
Sbjct: 129 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 188
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 189 VLCQAHGLTPQQV 201
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 35.0 bits (79), Expect = 0.044, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL-KSGQLPADLKIPDYDSGSKDVKENDEKMVPD 256
TP+Q++AI + I Q LE V RL VL + L D + +G K E ++++P
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPV 926
Query: 257 VENEADVEPNNV 268
+ + + P+ V
Sbjct: 927 LCQDHGLTPDQV 938
Score = 32.0 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G PA + G K E ++++P
Sbjct: 425 TPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLP 484
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 485 VLCQAHGLTPDQV 497
Score = 31.6 bits (70), Expect = 0.46, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + I Q L V RL VL G P + + G K E ++++P
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 553 VLCQAHGLTPDQV 565
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP Q++AI + Q LE V RL VL G PA + G K E ++++P
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 248 VLCQAHGLPPDQV 260
Score = 31.2 bits (69), Expect = 0.60, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G PA + + G K E ++++P
Sbjct: 731 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLP 790
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 199 PEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVPD 256
P+Q++AI + I Q LE V RL VL G P + G K E ++++P
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPV 316
Query: 257 VENEADVEPNNV 268
+ + P+ V
Sbjct: 317 LCQAHGLTPDQV 328
Score = 31.2 bits (69), Expect = 0.71, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 324 TPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 384 VLCQAHGLTPDQV 396
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + G K E ++++P
Sbjct: 290 TPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 349
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 350 VLCQAHGLTPDQV 362
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP Q++AI + I Q LE V RL VL G A + + G K E ++++P
Sbjct: 765 TPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLP 824
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 629 TPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 688
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G + ++G K E ++++P
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 723 VLCQAHGLTPDQV 735
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKS--GQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + I Q LE V RL VL G P + + G K E ++++P
Sbjct: 143 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNGGGKQALETVQRLLP 202
Query: 256 DVENEADVEPNNV 268
+ + P+ V
Sbjct: 203 VLCQAHGLTPDQV 215
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKS--GQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + I Q LE V RL VL G P + + G K E ++++P
Sbjct: 245 TPQQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNDGGKQALETVQRLLP 304
Query: 256 DVENEADVEPNNV 268
+ + + P V
Sbjct: 305 VLCQDHGLTPEQV 317
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKS--GQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G PA ++G K E ++++P
Sbjct: 347 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPAQAVAIANNNGGKQALETVQRLLP 406
Query: 256 DVENEADVEPNNV 268
+ + + P+ V
Sbjct: 407 VLCQDHGLTPDQV 419
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKS--GQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 211 TPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGKQALETVQRLLP 270
Query: 256 DVENEADVEPNNV 268
+ + + P+ V
Sbjct: 271 VLCQDHGLTPDQV 283
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL-KSGQLPAD--LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL ++ L D + I +D G K E ++++
Sbjct: 313 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD-GGKQALETVQRLL 371
Query: 255 PDVENEADVEP 265
P + + + P
Sbjct: 372 PVLCQDHGLTP 382
>pdb|3V6T|A Chain A, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
pdb|3V6T|B Chain B, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
Length = 499
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + +SG K E ++++P
Sbjct: 238 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 298 VLCQAHGLTPQQV 310
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 170 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 229
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 230 VLCQAHGLTPQQV 242
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 332 VLCQAHGLTPQQV 344
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLL 432
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 433 PVLCQAHGLTPQQV 446
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLL 126
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 127 PVLCQAHGLTPEQV 140
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 340 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 399
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 400 VLCQAHGLTPEQV 412
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V L VL G P + + G K E ++++P
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 196 VLCQAHGLTPQQV 208
>pdb|4GJR|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
pdb|4GJR|B Chain B, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
Length = 499
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + +SG K E ++++P
Sbjct: 231 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 290
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 291 VLCQAHGLTPQQV 303
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 163 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 222
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 223 VLCQAHGLTPQQV 235
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 265 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 324
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 325 VLCQAHGLTPQQV 337
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 367 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLL 425
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 426 PVLCQAHGLTPQQV 439
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 61 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLL 119
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 120 PVLCQAHGLTPEQV 133
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 333 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 392
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 393 VLCQAHGLTPEQV 405
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V L VL G P + + G K E ++++P
Sbjct: 129 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 188
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 189 VLCQAHGLTPQQV 201
>pdb|3V6P|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Dhax3, A
Tal Effector
Length = 442
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + +SG K E ++++P
Sbjct: 191 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 250
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 251 VLCQAHGLTPQQV 263
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 123 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 182
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 183 VLCQAHGLTPQQV 195
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 225 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 284
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 285 VLCQAHGLTPQQV 297
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 327 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLL 385
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 386 PVLCQAHGLTPQQV 399
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 21 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLL 79
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 80 PVLCQAHGLTPEQV 93
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 293 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 352
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 353 VLCQAHGLTPEQV 365
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V L VL G P + + G K E ++++P
Sbjct: 89 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 148
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 149 VLCQAHGLTPQQV 161
>pdb|4GJP|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To Dsdna
Containing Repetitive Methyl-Cpg
pdb|4GJP|B Chain B, Crystal Structure Of The Tal Effector Dhax3 Bound To Dsdna
Containing Repetitive Methyl-Cpg
Length = 499
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 163 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 222
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 223 VLCQAHGLTPQQV 235
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + ++G K E ++++P
Sbjct: 231 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNNGGKQALETVQRLLP 290
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 291 VLCQAHGLTPQQV 303
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 367 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLL 425
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 426 PVLCQAHGLTPQQV 439
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 265 TPQQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 324
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 325 VLCQAHGLTPQQV 337
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPAD-LKIPDYDSGSKDVKENDEKMV 254
TPEQ++AI + Q LE V RL VL G P + I +D G K E ++++
Sbjct: 61 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD-GGKQALETVQRLL 119
Query: 255 PDVENEADVEPNNV 268
P + + P V
Sbjct: 120 PVLCQAHGLTPEQV 133
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TP+Q++AI + Q LE V RL VL G P + + G K E ++++P
Sbjct: 333 TPQQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 392
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 393 VLCQAHGLTPEQV 405
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 198 TPEQIIAIKAAIVNSQTLEEVARLEKVL--KSGQLPADLKIPDYDSGSKDVKENDEKMVP 255
TPEQ++AI + Q LE V L VL G P + + G K E ++++P
Sbjct: 129 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 188
Query: 256 DVENEADVEPNNV 268
+ + P V
Sbjct: 189 VLCQAHGLTPQQV 201
>pdb|3AQP|A Chain A, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
pdb|3AQP|B Chain B, Crystal Structure Of Secdf, A Translocon-Associated
Membrane Protein, From Thermus Thrmophilus
Length = 741
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 196 APTPEQIIAIKAAIVNS-QTLEEVARLEKVLKSGQLPADLKIPD 238
AP Q I A++ ++EE + + VL+SG LP LK+ +
Sbjct: 215 APVIRQAITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAE 258
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 230 LPADLKIPD-YDSGSKDVKENDEKMVPDVENEADVEPNNVENQK 272
LP D KI D +D+ + DE+ +PD D P ++EN K
Sbjct: 289 LPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENYK 332
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 230 LPADLKIPD-YDSGSKDVKENDEKMVPDVENEADVEPNNVENQK 272
LP D KI D +D+ + DE+ +PD D P ++EN K
Sbjct: 290 LPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENYK 333
>pdb|3AQO|A Chain A, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|B Chain B, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|C Chain C, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
pdb|3AQO|D Chain D, Structure And Function Of A Membrane Component Secdf That
Enhances Protein Export
Length = 229
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 196 APTPEQIIAIKAAIVNS-QTLEEVARLEKVLKSGQLPADLKIPDYDS 241
AP Q I A++ ++EE + + VL+SG LP LK+ + +
Sbjct: 181 APVIRQAITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRA 227
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 230 LPADLKIPD-YDSGSKDVKENDEKMVPDVENEADVEPNNVENQK 272
LP D KI D +D+ + DE+ +PD D P ++EN K
Sbjct: 283 LPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYK 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,980,138
Number of Sequences: 62578
Number of extensions: 193389
Number of successful extensions: 519
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 73
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)