Query 023443
Match_columns 282
No_of_seqs 440 out of 2366
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.9 1.1E-23 2.5E-28 169.2 5.2 165 1-165 1-169 (175)
2 KOG0444 Cytoskeletal regulator 99.9 8.3E-25 1.8E-29 199.6 -2.8 238 12-254 71-332 (1255)
3 KOG0444 Cytoskeletal regulator 99.9 3.9E-24 8.5E-29 195.2 -0.0 236 12-260 96-384 (1255)
4 KOG4194 Membrane glycoprotein 99.9 3E-22 6.5E-27 181.6 4.8 237 2-250 83-329 (873)
5 KOG1644 U2-associated snRNP A' 99.8 1.7E-20 3.7E-25 150.0 11.3 227 1-232 1-233 (233)
6 PLN00113 leucine-rich repeat r 99.8 1.5E-21 3.2E-26 196.8 5.4 227 12-250 86-320 (968)
7 KOG4194 Membrane glycoprotein 99.8 1.5E-22 3.3E-27 183.4 -1.6 221 2-234 107-360 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 4.7E-24 1E-28 185.8 -12.1 212 12-237 84-297 (565)
9 PLN00113 leucine-rich repeat r 99.8 2.7E-21 5.8E-26 195.0 5.6 217 18-249 139-367 (968)
10 KOG0617 Ras suppressor protein 99.8 6.7E-22 1.5E-26 154.7 -3.7 163 41-239 32-197 (264)
11 KOG0617 Ras suppressor protein 99.8 2.1E-21 4.5E-26 152.0 -6.0 182 10-225 24-211 (264)
12 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 3.9E-26 169.7 -7.3 225 12-252 61-289 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 1.9E-17 4.1E-22 159.9 5.5 78 20-104 223-318 (788)
14 PRK15387 E3 ubiquitin-protein 99.7 9.7E-18 2.1E-22 161.9 2.4 179 20-234 283-465 (788)
15 KOG0618 Serine/threonine phosp 99.7 1.9E-18 4E-23 164.0 -4.2 197 18-250 240-464 (1081)
16 PRK15370 E3 ubiquitin-protein 99.7 6.1E-17 1.3E-21 156.8 5.1 197 4-234 206-407 (754)
17 KOG0532 Leucine-rich repeat (L 99.6 4.1E-19 8.8E-24 160.9 -10.1 191 16-244 72-263 (722)
18 KOG4237 Extracellular matrix p 99.6 1.8E-18 3.8E-23 150.8 -6.6 199 21-225 69-358 (498)
19 PRK15370 E3 ubiquitin-protein 99.6 5.3E-16 1.1E-20 150.4 6.5 198 20-251 200-401 (754)
20 KOG0618 Serine/threonine phosp 99.6 1.5E-17 3.2E-22 158.0 -8.9 210 3-224 247-487 (1081)
21 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.7E-20 133.2 -0.8 197 23-225 50-310 (498)
22 COG4886 Leucine-rich repeat (L 99.5 2.9E-15 6.3E-20 136.8 -0.4 177 14-225 111-289 (394)
23 PLN03210 Resistant to P. syrin 99.5 3.8E-14 8.3E-19 144.9 5.8 88 16-104 608-698 (1153)
24 PLN03210 Resistant to P. syrin 99.4 1E-12 2.3E-17 134.5 9.2 211 12-234 581-822 (1153)
25 PF14580 LRR_9: Leucine-rich r 99.4 2.1E-13 4.6E-18 109.8 2.5 120 26-152 4-125 (175)
26 COG4886 Leucine-rich repeat (L 99.3 4.4E-13 9.6E-18 122.4 3.9 184 3-221 122-308 (394)
27 KOG1259 Nischarin, modulator o 99.3 4.4E-13 9.5E-18 113.9 2.5 177 18-232 213-416 (490)
28 KOG0532 Leucine-rich repeat (L 99.3 1.1E-14 2.5E-19 132.4 -8.0 174 4-213 82-257 (722)
29 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-13 3.6E-18 121.2 -1.9 188 15-225 77-290 (319)
30 KOG1259 Nischarin, modulator o 99.3 2E-13 4.2E-18 116.0 -2.5 128 19-152 284-411 (490)
31 KOG0531 Protein phosphatase 1, 99.2 7.5E-13 1.6E-17 121.7 -1.8 193 17-225 70-267 (414)
32 cd00116 LRR_RI Leucine-rich re 99.2 8E-13 1.7E-17 116.8 -2.7 136 17-152 21-177 (319)
33 PF13855 LRR_8: Leucine rich r 99.2 2.4E-11 5.1E-16 80.9 3.8 59 65-124 2-60 (61)
34 PF13855 LRR_8: Leucine rich r 99.2 3.3E-11 7.1E-16 80.2 4.1 58 43-100 2-61 (61)
35 KOG0531 Protein phosphatase 1, 99.1 7.1E-12 1.5E-16 115.2 0.4 206 4-225 79-289 (414)
36 KOG1909 Ran GTPase-activating 99.1 1E-12 2.2E-17 113.5 -5.1 38 188-225 268-310 (382)
37 KOG3207 Beta-tubulin folding c 99.0 2.7E-11 5.8E-16 107.6 -2.2 187 16-225 143-338 (505)
38 PLN03150 hypothetical protein; 98.9 1.8E-09 4E-14 104.0 7.6 103 44-151 420-526 (623)
39 KOG1859 Leucine-rich repeat pr 98.9 9.5E-12 2.1E-16 116.4 -8.2 131 19-155 164-294 (1096)
40 KOG1859 Leucine-rich repeat pr 98.8 7.7E-11 1.7E-15 110.5 -5.7 133 12-153 102-267 (1096)
41 PLN03150 hypothetical protein; 98.8 9.2E-09 2E-13 99.2 6.9 103 21-124 420-526 (623)
42 KOG3207 Beta-tubulin folding c 98.8 4E-10 8.7E-15 100.2 -2.9 181 17-225 119-313 (505)
43 KOG4658 Apoptotic ATPase [Sign 98.6 2.9E-08 6.2E-13 98.5 5.5 104 18-123 544-652 (889)
44 PF12799 LRR_4: Leucine Rich r 98.6 3.1E-08 6.8E-13 61.0 3.3 41 19-59 1-41 (44)
45 KOG4579 Leucine-rich repeat (L 98.5 3.4E-09 7.3E-14 80.7 -4.2 108 20-130 28-140 (177)
46 KOG4579 Leucine-rich repeat (L 98.5 4.6E-09 9.9E-14 79.9 -3.6 103 43-151 28-134 (177)
47 KOG2739 Leucine-rich acidic nu 98.5 1.3E-07 2.7E-12 79.4 3.7 115 34-149 35-152 (260)
48 KOG4658 Apoptotic ATPase [Sign 98.5 1E-07 2.2E-12 94.7 3.6 129 13-149 517-651 (889)
49 KOG1909 Ran GTPase-activating 98.4 6.6E-08 1.4E-12 84.1 1.4 164 40-225 90-282 (382)
50 PF13306 LRR_5: Leucine rich r 98.4 7.8E-07 1.7E-11 67.9 7.1 121 13-143 6-129 (129)
51 PF12799 LRR_4: Leucine Rich r 98.4 1.7E-07 3.7E-12 57.7 2.7 37 43-79 2-39 (44)
52 KOG2123 Uncharacterized conser 98.3 8E-09 1.7E-13 87.3 -7.4 101 1-102 1-102 (388)
53 KOG1644 U2-associated snRNP A' 98.2 1.6E-06 3.5E-11 70.3 4.5 104 19-123 42-150 (233)
54 PRK15386 type III secretion pr 98.1 4.8E-06 1E-10 75.4 6.6 71 18-100 51-124 (426)
55 KOG2982 Uncharacterized conser 98.1 8.3E-07 1.8E-11 76.0 0.6 64 86-149 222-288 (418)
56 COG5238 RNA1 Ran GTPase-activa 98.0 2.3E-07 5E-12 78.4 -3.7 113 39-151 89-225 (388)
57 KOG2982 Uncharacterized conser 98.0 7.5E-07 1.6E-11 76.3 -1.3 198 23-225 49-261 (418)
58 KOG2123 Uncharacterized conser 97.9 3E-07 6.4E-12 78.0 -5.0 107 41-149 18-126 (388)
59 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-05 2.3E-10 68.5 4.1 187 18-225 29-254 (388)
60 PRK15386 type III secretion pr 97.9 3.5E-05 7.5E-10 69.9 7.6 49 20-75 73-123 (426)
61 PF13306 LRR_5: Leucine rich r 97.9 2.9E-05 6.2E-10 59.1 5.8 108 33-149 2-112 (129)
62 KOG3665 ZYG-1-like serine/thre 97.8 1.6E-05 3.5E-10 77.3 2.9 128 20-149 123-259 (699)
63 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 77.2 1.8 109 17-126 146-263 (699)
64 KOG2739 Leucine-rich acidic nu 97.5 3.4E-05 7.4E-10 65.0 0.9 105 18-123 42-153 (260)
65 KOG2120 SCF ubiquitin ligase, 97.4 2.2E-06 4.7E-11 73.5 -7.1 191 2-199 164-372 (419)
66 KOG2120 SCF ubiquitin ligase, 97.3 4.1E-06 8.9E-11 71.9 -7.0 132 15-150 206-348 (419)
67 PF00560 LRR_1: Leucine Rich R 96.8 0.00078 1.7E-08 34.7 1.7 21 20-40 1-21 (22)
68 KOG0473 Leucine-rich repeat pr 96.3 7.6E-05 1.6E-09 62.1 -6.3 94 30-126 29-124 (326)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0022 4.9E-08 32.9 1.0 17 66-82 2-18 (22)
70 PF13504 LRR_7: Leucine rich r 96.0 0.0049 1.1E-07 29.5 1.5 16 20-35 2-17 (17)
71 smart00370 LRR Leucine-rich re 95.7 0.0064 1.4E-07 32.5 1.5 22 63-84 1-22 (26)
72 smart00369 LRR_TYP Leucine-ric 95.7 0.0064 1.4E-07 32.5 1.5 22 63-84 1-22 (26)
73 KOG0473 Leucine-rich repeat pr 95.6 0.00036 7.7E-09 58.2 -5.6 88 14-102 37-125 (326)
74 PF13504 LRR_7: Leucine rich r 95.2 0.014 3E-07 27.9 1.5 15 114-128 2-16 (17)
75 smart00369 LRR_TYP Leucine-ric 94.3 0.03 6.6E-07 29.8 1.6 20 112-131 1-20 (26)
76 smart00370 LRR Leucine-rich re 94.3 0.03 6.6E-07 29.8 1.6 20 112-131 1-20 (26)
77 KOG3763 mRNA export factor TAP 93.8 0.044 9.6E-07 51.2 2.6 87 62-149 216-310 (585)
78 KOG4308 LRR-containing protein 93.3 0.0009 1.9E-08 62.6 -9.5 36 190-225 262-302 (478)
79 smart00365 LRR_SD22 Leucine-ri 91.0 0.22 4.8E-06 26.6 2.1 17 42-58 2-18 (26)
80 smart00364 LRR_BAC Leucine-ric 85.6 0.54 1.2E-05 25.1 1.3 17 89-105 3-19 (26)
81 PF13516 LRR_6: Leucine Rich r 83.2 0.67 1.5E-05 23.9 1.0 14 42-55 2-15 (24)
82 KOG3864 Uncharacterized conser 82.9 0.13 2.9E-06 42.1 -2.6 81 65-149 102-185 (221)
83 KOG1947 Leucine rich repeat pr 79.9 0.33 7.2E-06 45.0 -1.5 108 18-125 187-307 (482)
84 KOG3763 mRNA export factor TAP 75.8 0.83 1.8E-05 43.0 -0.2 63 40-102 216-284 (585)
85 smart00368 LRR_RI Leucine rich 75.3 2.4 5.2E-05 22.8 1.7 13 43-55 3-15 (28)
86 KOG3864 Uncharacterized conser 74.0 0.91 2E-05 37.4 -0.3 89 33-122 92-185 (221)
87 KOG1947 Leucine rich repeat pr 72.6 0.69 1.5E-05 42.9 -1.5 108 40-150 186-305 (482)
88 KOG4341 F-box protein containi 71.9 2.3 4.9E-05 38.9 1.6 131 17-149 292-435 (483)
89 KOG4341 F-box protein containi 70.7 2.5 5.5E-05 38.6 1.7 135 20-154 269-415 (483)
90 TIGR00864 PCC polycystin catio 62.6 4.5 9.7E-05 45.4 1.9 29 48-76 1-31 (2740)
91 KOG4308 LRR-containing protein 57.7 0.47 1E-05 44.6 -5.7 111 15-126 168-303 (478)
92 TIGR00864 PCC polycystin catio 53.1 9.2 0.0002 43.1 2.3 36 70-105 1-36 (2740)
93 smart00367 LRR_CC Leucine-rich 30.2 38 0.00081 17.5 1.4 10 43-52 3-12 (26)
94 smart00446 LRRcap occurring C- 29.4 48 0.001 17.7 1.6 19 131-149 4-22 (26)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.89 E-value=1.1e-23 Score=169.21 Aligned_cols=165 Identities=51% Similarity=0.778 Sum_probs=71.0
Q ss_pred CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
|||||.+.|...+.+.++.++++|+|++|.|+.|...-..+.+|+.|+|++|.|+.++++..++.|+.|++++|+|+.+.
T Consensus 1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence 89999999999999999999999999999999987554468999999999999999999999999999999999999997
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc----cHHHHHH
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAAS 156 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~----~~~~~~~ 156 (282)
+.+...+++|+.|++++|+|..+..+..+..+++|+.|++.+|+++..+.++.+.+..+|+|+.||... .+..+..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~ 160 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEK 160 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B------
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccc
Confidence 655456899999999999999988777888999999999999999999999999999999999999877 6777777
Q ss_pred hccChhHHH
Q 023443 157 LFASEEMEE 165 (282)
Q Consensus 157 ~~~~~~~~~ 165 (282)
+|.+.....
T Consensus 161 ~f~~~~~~~ 169 (175)
T PF14580_consen 161 LFKGKRAAQ 169 (175)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 777665433
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=8.3e-25 Score=199.55 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=158.5
Q ss_pred CCCCCCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 12 SPHFFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
-..++.++.|+.+.+.+|++. .||..++.+..|++||||+|++++.| .+....++.+|+||+|+|..||...|.+++
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 445677778888888888877 68877777888888888888888887 677778888888888888888888888888
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHh
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAK 168 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~ 168 (282)
-|-+||||+|++..+|| .+..+..|+.|.|++|++...--. .+-.+++|++|.+++.......+-........+.
T Consensus 151 DLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHh---cCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 88888888888888887 777888888888888865411000 1112334444444441111111111111111111
Q ss_pred hh----ccccccCCCC----------------CCCcch-hhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhC
Q 023443 169 KE----SMKTLMPVEV----------------PNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS 227 (282)
Q Consensus 169 ~~----~~~~~~p~~~----------------~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~ 227 (282)
.+ +....+|..+ ..+... +.-.+|+.|+||.|+++.+|.++++++.|+.|.+.+|++.-
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence 11 1111122211 111111 24567888889999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCC
Q 023443 228 GQLPADLKIPDYDSGSKDVKENDEKMV 254 (282)
Q Consensus 228 g~iP~~l~~~~~~~~~~~~~~~~~~~~ 254 (282)
..||++||+.....-+-.+.++.|-.|
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccccCc
Confidence 789999999887776666666655443
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.9e-24 Score=195.18 Aligned_cols=236 Identities=19% Similarity=0.239 Sum_probs=183.4
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
|+.++.+..|++||||+|+++++|..+...+++-+|+||+|+|..|| -|.+++.|-+|+||+|++..+||.+- .+..
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R-RL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR-RLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH-HHhh
Confidence 67788899999999999999999988888889999999999999998 46788999999999999999988874 7888
Q ss_pred ccEEeccCCcCC-----CCCCC-------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443 90 LHTLVLTNNRLV-----NLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL 145 (282)
Q Consensus 90 L~~L~L~~N~l~-----~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L 145 (282)
|++|.|++|.+. .+|.+ .++..+.+|..+++|.|.+..+|. .+.++++|+.|
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL 250 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL 250 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence 888888888542 22221 145556677777888888887777 67777777777
Q ss_pred cCcccHHHH-------------------------HHhccChhHHHHHhhhccccc--cCCCCCCCcchhhcCCCeeeCCC
Q 023443 146 DFKKERMEA-------------------------ASLFASEEMEEEAKKESMKTL--MPVEVPNVSEEEEQQTPKVVAPT 198 (282)
Q Consensus 146 ~ls~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~l~~L~~L~Ls 198 (282)
+||+|.+.. ..++...+...+....+..++ +|..|+ .+.+|+++..+
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aa 324 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAA 324 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhh
Confidence 777744321 111111112222222233343 677777 89999999999
Q ss_pred hhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccc
Q 023443 199 PEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENE 260 (282)
Q Consensus 199 ~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (282)
+|.+.-+|..+++|..|+.|.+..|++ -.+|..|........+|.-++..-.||+.-.+.
T Consensus 325 nN~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 325 NNKLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred ccccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 999999999999999999999999999 889999999999999999999999999876654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3e-22 Score=181.57 Aligned_cols=237 Identities=18% Similarity=0.223 Sum_probs=184.1
Q ss_pred cccCHHHHhcCC--CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443 2 VRLTADLIWKSP--HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT 77 (282)
Q Consensus 2 ~~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~ 77 (282)
+.++.+.+.+.. .|.++++|+.+++.+|.++.||.......+|+.|+|.+|.|+.+. .+..++.|+.|||+.|.|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 456666666543 468999999999999999999988777888999999999999985 7888999999999999999
Q ss_pred ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--H
Q 023443 78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--A 155 (282)
Q Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~ 155 (282)
.++...|..-.++++|+|++|+|+.+.. +.|.++.+|..|.|+.|+++.+|.. .|.++++|+.|+|..|++.. .
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred cccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHH---Hhhhcchhhhhhccccceeeehh
Confidence 9998888777899999999999999987 7999999999999999999999997 67889999999999976543 3
Q ss_pred HhccChhHHHHHhhh-cccccc-CCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCC
Q 023443 156 SLFASEEMEEEAKKE-SMKTLM-PVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPA 232 (282)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~-p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~ 232 (282)
..|.+....+.+..- +....+ .+.|. .+.++++|+|..|+++.+. .++..+++|+.|++++|.+ ..|..
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI--~rih~ 310 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI--QRIHI 310 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCccee------eecccceeecccchhhhhhcccccccchhhhhccchhhh--heeec
Confidence 557776666554433 323333 34444 6778888888888888766 5678888888888888888 44332
Q ss_pred CC-CCCCCCCCCCcccccC
Q 023443 233 DL-KIPDYDSGSKDVKEND 250 (282)
Q Consensus 233 ~l-~~~~~~~~~~~~~~~~ 250 (282)
.- ..-.+..-++...+..
T Consensus 311 d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred chhhhcccceeEecccccc
Confidence 22 2233444455555443
No 5
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.84 E-value=1.7e-20 Score=150.03 Aligned_cols=227 Identities=55% Similarity=0.849 Sum_probs=189.8
Q ss_pred CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
|||++++.+.+.++|.+...=+.++|.+.++..+...-.-+.+...+||++|.+..++.|..++.|.+|.|++|+|+.|.
T Consensus 1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~ 80 (233)
T KOG1644|consen 1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID 80 (233)
T ss_pred CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec
Confidence 89999999999999999999999999999998777644456788999999999999999999999999999999999999
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc----cHHHHHH
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK----ERMEAAS 156 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~----~~~~~~~ 156 (282)
|.+..-+++|..|.|.+|.|..+..++.+..|++|++|.+-+|+++.-..++.+.+..+++|++||.++ .|..+..
T Consensus 81 p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~ 160 (233)
T KOG1644|consen 81 PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV 160 (233)
T ss_pred cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence 998878899999999999999988888899999999999999999999999988999999999999999 6778888
Q ss_pred hccChhHHHHHhhhc-cccccCCCCCCCcchhhcCCCe-eeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443 157 LFASEEMEEEAKKES-MKTLMPVEVPNVSEEEEQQTPK-VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232 (282)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~l~~L~-~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~ 232 (282)
+|....+......++ ...+-|+... ..++.-. ...=+..+...|-.+|.+.++|.+++...-.+++|.||.
T Consensus 161 ~f~~k~~k~~~~~i~~s~~~~~~~~~-----~~~p~~~~~~~~t~e~~~~iK~ai~~a~sl~Ei~RL~~~l~~G~~p~ 233 (233)
T KOG1644|consen 161 FFKGKKGKKAAKSINRSKASDPGSHY-----AELPNANSVVTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIPK 233 (233)
T ss_pred HhccccchhhhhhhhhhhccCchhcc-----ccCCcccCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence 886666665555553 3333333211 0111100 011155677789999999999999999999999999994
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.5e-21 Score=196.81 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=145.1
Q ss_pred CCCCCCCCceeEEEecCCccc-ccccc-ccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 12 SPHFFNAIKERELDLRGNKIA-VIENL-GATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
++.|..+++|+.|+|++|++. .+|.. +..+++|++|+|++|.+++....+.+++|++|+|++|.+++..+..+.++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 345667778888888888776 67743 4477788888888887765422345677778888877777655554567778
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHH
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEE 166 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~ 166 (282)
|++|++++|.+.+..+ ..++++++|++|++++|.+. .+|. .++++++|++|++++|..... ..+........
T Consensus 166 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 166 LKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 8888888887765443 36777778888888877776 4455 577777888887777553211 11111111110
Q ss_pred Hhhh--ccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCC
Q 023443 167 AKKE--SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGS 243 (282)
Q Consensus 167 ~~~~--~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~ 243 (282)
+... .....+|..+. .+++|+.|++++|+++ .+|..+.++++|++|++++|.+ .+.+|..+........+
T Consensus 241 L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLG------NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEIL 313 (968)
T ss_pred EECcCceeccccChhHh------CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEE
Confidence 0000 11123444444 6777788888888776 6777777778888888887777 56777777666655555
Q ss_pred CcccccC
Q 023443 244 KDVKEND 250 (282)
Q Consensus 244 ~~~~~~~ 250 (282)
+...+..
T Consensus 314 ~l~~n~~ 320 (968)
T PLN00113 314 HLFSNNF 320 (968)
T ss_pred ECCCCcc
Confidence 5554443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-22 Score=183.45 Aligned_cols=221 Identities=23% Similarity=0.257 Sum_probs=139.6
Q ss_pred cccCHHHHhcCCCCCCCCc-eeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443 2 VRLTADLIWKSPHFFNAIK-ERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT 77 (282)
Q Consensus 2 ~~l~~~~i~~~~~~~~l~~-L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~ 77 (282)
|.+..+.+...|.|+.... |+.|+|.+|.|+++. ..+..++.|+.||||.|.|+.+| .|..-.++++|+|++|.|+
T Consensus 107 v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 107 VNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc
Confidence 4556667777777776654 777777777777666 55666677777777777777664 5666566677777777776
Q ss_pred ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC------------------------ccCCchH
Q 023443 78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT------------------------KKPNYRL 133 (282)
Q Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~ip~~~~ 133 (282)
.+..+.|.++.+|..|.|++|+|+.+|. ..|.++++|+.|+|..|+|. .+.++
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG-- 263 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-- 263 (873)
T ss_pred ccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc--
Confidence 6666666666666666666666666665 45555666666666555554 44443
Q ss_pred HHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccc-cCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HH
Q 023443 134 YVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTL-MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AA 208 (282)
Q Consensus 134 ~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~-~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~ 208 (282)
+|..+.++++|+|+.|++... .|..+....+.+... +.+.. -+... ...++|++|+|++|+|+.++ .+
T Consensus 264 -~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W------sftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 264 -AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW------SFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred -ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh------hhcccceeEeccccccccCChhH
Confidence 345566667777777665432 232233333322221 22222 22222 25678889999999998777 46
Q ss_pred hhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 209 IVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 209 l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
+.-+..|++|++++|.+ ..|-...
T Consensus 337 f~~L~~Le~LnLs~Nsi--~~l~e~a 360 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSI--DHLAEGA 360 (873)
T ss_pred HHHHHHhhhhcccccch--HHHHhhH
Confidence 78888899999999888 5554433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=4.7e-24 Score=185.79 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=147.4
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
|++++.+..++.++.++|++..+|..++.+.++..|+.++|.+..++ +++.+..|..++..+|+++.+|++++ .+.+|
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l 162 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKL 162 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH-HHHHH
Confidence 44444444455555555555555554555555555555555555553 55555556666666666666666554 56666
Q ss_pred cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH-hh
Q 023443 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA-KK 169 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~-~~ 169 (282)
..+++.+|+++.+|+ ..-.++.|++++...|-+..+|+ .++.+.+|..|++..|++..-.-|.+......+ ..
T Consensus 163 ~~l~~~~n~l~~l~~--~~i~m~~L~~ld~~~N~L~tlP~----~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPE--NHIAMKRLKHLDCNSNLLETLPP----ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred HHhhccccchhhCCH--HHHHHHHHHhcccchhhhhcCCh----hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence 666666666666666 33347777788888888888887 678888888888888776555556555444333 23
Q ss_pred hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCC
Q 023443 170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP 237 (282)
Q Consensus 170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~ 237 (282)
.+.+..+|.++. ..+.++.+|||..|+++++|..++.+.+|+.||+++|.+ ..+|.++|..
T Consensus 237 ~N~i~~lpae~~-----~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl 297 (565)
T KOG0472|consen 237 ENQIEMLPAEHL-----KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL 297 (565)
T ss_pred ccHHHhhHHHHh-----cccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence 366777887776 578899999999999999999999999999999999999 8999999977
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.7e-21 Score=194.96 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 18 AIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
+++|++|+|++|.+. .+|..++.+++|++|++++|.+.+ +| .++++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 333444444444443 334444444455555555554432 23 344445555555555544443333333445555555
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE- 170 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~- 170 (282)
+++|.+++..+ ..++++++|++|++++|.++ .+|. .++.+++|++|++++|+.... ..+.... .+..+
T Consensus 219 L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~ 290 (968)
T PLN00113 219 LGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLD 290 (968)
T ss_pred CcCCccCCcCC-hhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEE
Confidence 55555443222 24445555555555555544 2333 345555555555555432110 0000000 00000
Q ss_pred ---c-cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCc
Q 023443 171 ---S-MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD 245 (282)
Q Consensus 171 ---~-~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~ 245 (282)
+ ....+|..+. .+++|+.|++++|.++ .+|..+..+++|+.|++.+|.+ .+.+|..++.......++.
T Consensus 291 Ls~n~l~~~~p~~~~------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 291 LSDNSLSGEIPELVI------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CcCCeeccCCChhHc------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCChHHhCCCCCcEEEC
Confidence 0 0112233233 5667777777777776 5666777777777777777777 5667776666655555555
Q ss_pred cccc
Q 023443 246 VKEN 249 (282)
Q Consensus 246 ~~~~ 249 (282)
..++
T Consensus 364 s~n~ 367 (968)
T PLN00113 364 STNN 367 (968)
T ss_pred CCCe
Confidence 5554
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=6.7e-22 Score=154.73 Aligned_cols=163 Identities=25% Similarity=0.368 Sum_probs=114.8
Q ss_pred CCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEE
Q 023443 41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (282)
Q Consensus 41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 119 (282)
+++++.|-||+|+++.+| .+..+.+|+.|++++|+|+.+|..+ +.++.|+.|+++-|++..+|. .|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lpr--gfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPR--GFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCcc--ccCCCchhhhhh
Confidence 566666666666666664 6666666777777777777766665 366677777777777666665 677777777777
Q ss_pred eeCCcCC--ccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCC
Q 023443 120 LLDNSIT--KKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAP 197 (282)
Q Consensus 120 L~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~L 197 (282)
|.+|.+. .+|. .|..++.|+.|.++.|. ...+|.+++ .+++|+.|.+
T Consensus 109 ltynnl~e~~lpg----nff~m~tlralyl~dnd---------------------fe~lp~dvg------~lt~lqil~l 157 (264)
T KOG0617|consen 109 LTYNNLNENSLPG----NFFYMTTLRALYLGDND---------------------FEILPPDVG------KLTNLQILSL 157 (264)
T ss_pred ccccccccccCCc----chhHHHHHHHHHhcCCC---------------------cccCChhhh------hhcceeEEee
Confidence 7777665 4565 34555666666666644 344677776 7888888888
Q ss_pred ChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 239 (282)
Q Consensus 198 s~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~ 239 (282)
..|.+-++|..++.++.|++|.+.+|++ ..+|++++....
T Consensus 158 rdndll~lpkeig~lt~lrelhiqgnrl--~vlppel~~l~l 197 (264)
T KOG0617|consen 158 RDNDLLSLPKEIGDLTRLRELHIQGNRL--TVLPPELANLDL 197 (264)
T ss_pred ccCchhhCcHHHHHHHHHHHHhccccee--eecChhhhhhhh
Confidence 8888888888888888888888888888 888888876543
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=2.1e-21 Score=151.99 Aligned_cols=182 Identities=23% Similarity=0.305 Sum_probs=158.2
Q ss_pred hcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 10 WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 10 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
.+.+.++++.+++.|-||+|+++.+|+.+..+.+|++|++++|+|..+| .++.+++|+.|+++-|++..+|.++ +.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCc
Confidence 4456778889999999999999999999999999999999999999998 8999999999999999999998886 4899
Q ss_pred cccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443 89 KLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE 166 (282)
Q Consensus 89 ~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~ 166 (282)
.|+.|||.+|.+.. +|. .|..++.|+.|+|++|.|.-+|. .++++++|+.|.++.|..
T Consensus 103 ~levldltynnl~e~~lpg--nff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdndl-------------- 162 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPG--NFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDNDL-------------- 162 (264)
T ss_pred hhhhhhccccccccccCCc--chhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCch--------------
Confidence 99999999999875 554 78889999999999999999999 799999999999998763
Q ss_pred HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccC---hHHHHHHHHhh
Q 023443 167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQT---LEEVARLEKVL 225 (282)
Q Consensus 167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~---L~~L~l~~N~l 225 (282)
-.+|.+++ .+.+|+.|.+.+|+++.+|+.++++.- =+++.+.+|..
T Consensus 163 -------l~lpkeig------~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 163 -------LSLPKEIG------DLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred -------hhCcHHHH------HHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence 23566776 888999999999999999999877643 34455566654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.8e-21 Score=169.75 Aligned_cols=225 Identities=20% Similarity=0.218 Sum_probs=167.7
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
.+.+.++..|++|++++|++..+|+.++.+..++.++.++|+++.+| .++.+.+|..++.++|.+..++++++ .+..|
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~-~~~~l 139 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG-RLLDL 139 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH-HHhhh
Confidence 34566777788888888888888877777888888888888888877 67777888888888888888877775 67778
Q ss_pred cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH-HHhccChhHHHHHhh
Q 023443 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA-ASLFASEEMEEEAKK 169 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~~~~~~~~~~~ 169 (282)
..++..+|+++.+|+ .++.+.+|..+++.+|.++.+|+ ..-+++.|++||...|-... ..-.++......+..
T Consensus 140 ~dl~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~----~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 140 EDLDATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPE----NHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhccccccccCch--HHHHHHHHHHhhccccchhhCCH----HHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 888888888888876 77777788888888888888777 34447788888877654321 111223333333322
Q ss_pred h-ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhh-cccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccc
Q 023443 170 E-SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIV-NSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVK 247 (282)
Q Consensus 170 ~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~-~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~ 247 (282)
- +...++| +|+ .+..|+.+.++.|+|+.+|.+.. .++++.+||+.+|++ ..+|.+++.......+|.+.
T Consensus 214 ~~Nki~~lP-ef~------gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 214 RRNKIRFLP-EFP------GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hhcccccCC-CCC------ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccC
Confidence 2 5566777 676 78888899999999999998875 888999999999999 88899999888788887777
Q ss_pred ccCCC
Q 023443 248 ENDEK 252 (282)
Q Consensus 248 ~~~~~ 252 (282)
+..-.
T Consensus 285 N~is~ 289 (565)
T KOG0472|consen 285 NDISS 289 (565)
T ss_pred Ccccc
Confidence 66433
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=1.9e-17 Score=159.90 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=39.4
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCC------------------CCCccCeEeccCCcCcccCC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP------------------HLNRLGTLIINNNRITRINP 81 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~------------------~l~~L~~L~L~~N~l~~~~~ 81 (282)
+|+.|++++|+|+.+|.. +++|++|++++|+|+.+|.+. ...+|+.|++++|+++.+|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 456666666666665542 345666666666665554211 01233344444444444432
Q ss_pred CcccCCccccEEeccCCcCCCCC
Q 023443 82 NIGEFLPKLHTLVLTNNRLVNLV 104 (282)
Q Consensus 82 ~~~~~l~~L~~L~L~~N~l~~~~ 104 (282)
..++|+.|++++|+|+.+|
T Consensus 300 ----~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 300 ----LPPGLQELSVSDNQLASLP 318 (788)
T ss_pred ----cccccceeECCCCccccCC
Confidence 1245666666666666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=9.7e-18 Score=161.87 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=114.6
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (282)
+|+.|++++|+|+.+|.. +++|+.|++++|+|+.+|.+. ..|+.|++++|+++.+|. ...+|++|+|++|+
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQ 353 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc--ccccccccccCccccccc----cccccceEecCCCc
Confidence 445555555555555542 356778888888877776432 356667777777777653 12468888888888
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh----ccccc
Q 023443 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE----SMKTL 175 (282)
Q Consensus 100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 175 (282)
|+.+|. . ..+|+.|++++|+|+.+|. . ..+|+.|++++|.+...... . ..+..+ +....
T Consensus 354 Ls~LP~--l---p~~L~~L~Ls~N~L~~LP~----l---~~~L~~LdLs~N~Lt~LP~l--~---s~L~~LdLS~N~Lss 416 (788)
T PRK15387 354 LASLPT--L---PSELYKLWAYNNRLTSLPA----L---PSGLKELIVSGNRLTSLPVL--P---SELKELMVSGNRLTS 416 (788)
T ss_pred cCCCCC--C---CcccceehhhccccccCcc----c---ccccceEEecCCcccCCCCc--c---cCCCEEEccCCcCCC
Confidence 888775 2 2456677777777777775 1 24677777777654321100 0 001111 12222
Q ss_pred cCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 176 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 176 ~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
+|.. ..+|+.|++++|+|+.||..+.++++|+.|++++|.| +|.+|..+
T Consensus 417 IP~l---------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L-s~~~~~~L 465 (788)
T PRK15387 417 LPML---------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL-SERTLQAL 465 (788)
T ss_pred CCcc---------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC-CchHHHHH
Confidence 3322 2367889999999999999999999999999999999 67766654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-18 Score=164.02 Aligned_cols=197 Identities=21% Similarity=0.255 Sum_probs=134.9
Q ss_pred CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
..+|+++++++|+++.+|.+++.+.+|+.++..+|+++.+| .+...++|+.|.+.+|.++.+|+.. .++.+|++|+|.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeeeeeeh
Confidence 45677788888888888877777888888888888887776 5666777777777777777777655 367777777777
Q ss_pred CCcCCCCCCCCCCCC-------------------------CCCccEEEeeCCcCC--ccCCchHHHHhhCCCCcEecCcc
Q 023443 97 NNRLVNLVEIDPLTS-------------------------LPKLQFLSLLDNSIT--KKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 97 ~N~l~~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
.|.|..+|+ ..+.. .+.|+.|++.+|.++ .+| .+.+..+|+.|+|++
T Consensus 319 ~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-----~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 319 SNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-----VLVNFKHLKVLHLSY 392 (1081)
T ss_pred hccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-----hhccccceeeeeecc
Confidence 777777665 12221 223444455555554 222 356666777777777
Q ss_pred cHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCC
Q 023443 150 ERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQ 229 (282)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~ 229 (282)
|++ +.+|+... .++..|+.|+||+|+++.||..+++|+.|++|...+|++ ..
T Consensus 393 NrL---------------------~~fpas~~-----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l--~~ 444 (1081)
T KOG0618|consen 393 NRL---------------------NSFPASKL-----RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL--LS 444 (1081)
T ss_pred ccc---------------------ccCCHHHH-----hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce--ee
Confidence 653 33443322 366778888888888888888888888888888888888 77
Q ss_pred CCCCCCCCCCCCCCCcccccC
Q 023443 230 LPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 230 iP~~l~~~~~~~~~~~~~~~~ 250 (282)
+| ++.......-+|++.++.
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred ch-hhhhcCcceEEecccchh
Confidence 77 777666666666666653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.1e-17 Score=156.84 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=135.9
Q ss_pred cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCC
Q 023443 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
|+.+.|...+.. -.++|+.|++++|.|+.+|..+. .+|+.|+|++|.+..+| .+. .+|+.|++++|+++.+|..
T Consensus 206 Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 206 LDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred ecCCCCCcCChh-hccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccc
Confidence 344444443321 13589999999999999986553 57999999999999887 443 5789999999999988765
Q ss_pred cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
++ ++|++|++++|+|+.+|. .+. ++|+.|++++|.++.+|.. + .++|+.|++++|.+.... ...
T Consensus 281 l~---~sL~~L~Ls~N~Lt~LP~--~lp--~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~Lt~LP---~~l 344 (754)
T PRK15370 281 LP---EELRYLSVYDNSIRTLPA--HLP--SGITHLNVQSNSLTALPET----L--PPGLKTLEAGENALTSLP---ASL 344 (754)
T ss_pred cC---CCCcEEECCCCccccCcc--cch--hhHHHHHhcCCccccCCcc----c--cccceeccccCCccccCC---hhh
Confidence 53 479999999999988875 332 4677888888888877762 2 257777777775532210 000
Q ss_pred HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 163 MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 163 ~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
. ..+..+ +....+|..+. +.|+.|++++|+|+.+|+.+.. +|+.|++++|+| ..+|..+
T Consensus 345 ~-~sL~~L~Ls~N~L~~LP~~lp--------~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L--~~LP~sl 407 (754)
T PRK15370 345 P-PELQVLDVSKNQITVLPETLP--------PTITTLDVSRNALTNLPENLPA--ALQIMQASRNNL--VRLPESL 407 (754)
T ss_pred c-CcccEEECCCCCCCcCChhhc--------CCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCc--ccCchhH
Confidence 0 011111 22233444332 4789999999999999988754 699999999999 5777654
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.65 E-value=4.1e-19 Score=160.94 Aligned_cols=191 Identities=20% Similarity=0.255 Sum_probs=161.0
Q ss_pred CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
..+..-...||+.|++..+|..++.+..|+.+.|.+|.|..+| .+.++..|++++|+.|+++.+|.+++ .|+ |+.|.
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEE
Confidence 4556667789999999999988888889999999999999987 78899999999999999999988886 554 89999
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT 174 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
+++|+++.+|. .++.+..|..|+.+.|.+.++|. .++.+.+|+.|.++.|+. .
T Consensus 150 ~sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l---------------------~ 202 (722)
T KOG0532|consen 150 VSNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHL---------------------E 202 (722)
T ss_pred EecCccccCCc--ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhh---------------------h
Confidence 99999999987 78888889999999999999998 688899998888887764 2
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK 244 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~ 244 (282)
.+|.+.. .-.|..||+|+|+++.||-.|.+++.|++|-|.+|.| .+-|.+|+..++.-.+.
T Consensus 203 ~lp~El~-------~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL--qSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 203 DLPEELC-------SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL--QSPPAQICEKGKVHIFK 263 (722)
T ss_pred hCCHHHh-------CCceeeeecccCceeecchhhhhhhhheeeeeccCCC--CCChHHHHhccceeeee
Confidence 2455544 3368899999999999999999999999999999999 66688888766654433
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=1.8e-18 Score=150.83 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=116.7
Q ss_pred eeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccC-CcCcccCCCcccCCccccEEecc
Q 023443 21 ERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 21 L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
.+.++|..|+|+.|| ..|..+++|+.||||+|.|+.| | +|.++.+|..|-+-+ |+|+.+|.+.|.++.+|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 445566666666665 4555666666666666666655 3 555555555554433 56666665555555555555444
Q ss_pred ------------------------CCcCCCCCCCCCCCCCCCccEEEeeCCcCC--------------------------
Q 023443 97 ------------------------NNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-------------------------- 126 (282)
Q Consensus 97 ------------------------~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------- 126 (282)
.|.+..++. ..|..+..++.+.+..|++-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 444444443 34555555555555555311
Q ss_pred ----------ccCCchH-----------------------HHHhhCCCCcEecCcccHH--HHHHhccChhHHHHHhhh-
Q 023443 127 ----------KKPNYRL-----------------------YVIHKLKSLRVLDFKKERM--EAASLFASEEMEEEAKKE- 170 (282)
Q Consensus 127 ----------~ip~~~~-----------------------~~l~~l~~L~~L~ls~~~~--~~~~~~~~~~~~~~~~~~- 170 (282)
+++..+| ..|..+++|+.|++++|++ ....+|.+....+.+..-
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1111111 1367788888888888655 345777776655544332
Q ss_pred ccccccCCCCCCCcchhhcCCCeeeCCChhHHHH-HHHHhhcccChHHHHHHHHhh
Q 023443 171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA-IKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~l~~~~~L~~L~l~~N~l 225 (282)
+...++...++ .++.+|+.|+|.+|+|+. -|.+|..+.+|.+|++..|.+
T Consensus 308 N~l~~v~~~~f-----~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 NKLEFVSSGMF-----QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chHHHHHHHhh-----hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 44444444333 477888888888888884 556778888888888777654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=5.3e-16 Score=150.36 Aligned_cols=198 Identities=21% Similarity=0.302 Sum_probs=96.1
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
.|+.|+|++|+|+.+|..+. .+|++|++++|.|+.+| .+. .+|+.|+|++|.+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP---SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh---CCCCEEECcCC
Confidence 45555555555555554332 35555555555555554 222 245555555555555544332 34555666666
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhh-hccccc
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKK-ESMKTL 175 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~-~~~~~~ 175 (282)
.|+.+|. .+. ++|+.|++++|+|+.+|.. +. ++|+.|++++|.+... ..+. ....+.. .+..+.
T Consensus 273 ~L~~LP~--~l~--~sL~~L~Ls~N~Lt~LP~~----lp--~sL~~L~Ls~N~Lt~LP~~l~~---sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 273 KISCLPE--NLP--EELRYLSVYDNSIRTLPAH----LP--SGITHLNVQSNSLTALPETLPP---GLKTLEAGENALTS 339 (754)
T ss_pred ccCcccc--ccC--CCCcEEECCCCccccCccc----ch--hhHHHHHhcCCccccCCccccc---cceeccccCCcccc
Confidence 6555544 222 3555666666666555541 11 2455555555443210 0000 0000000 011222
Q ss_pred cCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCC
Q 023443 176 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDE 251 (282)
Q Consensus 176 ~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~ 251 (282)
+|..+. ++|+.|++++|+|+.+|..+. ++|+.|++++|.| ..||+.+.. ....++...++..
T Consensus 340 LP~~l~--------~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L--t~LP~~l~~--sL~~LdLs~N~L~ 401 (754)
T PRK15370 340 LPASLP--------PELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL--TNLPENLPA--ALQIMQASRNNLV 401 (754)
T ss_pred CChhhc--------CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcC--CCCCHhHHH--HHHHHhhccCCcc
Confidence 332221 466677777777776666553 4667777777777 466665532 2333444444433
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-17 Score=157.98 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=151.6
Q ss_pred ccCHHHHhcCCC-CCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccC
Q 023443 3 RLTADLIWKSPH-FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 3 ~l~~~~i~~~~~-~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
.++.+.+..-+. +..+.+|+.++..+|+|..+|..+....+|+.|...+|.+..+| ....++.|++|+|..|+|..+|
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence 344455554443 45678888888888888888877777888888888888888886 4455888888888888888776
Q ss_pred CCcc-------------------------cCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH
Q 023443 81 PNIG-------------------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135 (282)
Q Consensus 81 ~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 135 (282)
+..+ ...+.|+.|.+.+|+++.-.- ..+.+..+|++|+|++|++..+|.. .
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas---~ 402 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSYNRLNSFPAS---K 402 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch-hhhccccceeeeeecccccccCCHH---H
Confidence 5443 134456777888888875322 2677889999999999999999986 6
Q ss_pred HhhCCCCcEecCcccHHHHHH--hccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHH--HHHHhhc
Q 023443 136 IHKLKSLRVLDFKKERMEAAS--LFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA--IKAAIVN 211 (282)
Q Consensus 136 l~~l~~L~~L~ls~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~l~~ 211 (282)
+.++..|+.|++|+|++..-. .........+....+....+| ++. .++.|+.+|+|.|+|+. +|.. ..
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~------~l~qL~~lDlS~N~L~~~~l~~~-~p 474 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA------QLPQLKVLDLSCNNLSEVTLPEA-LP 474 (1081)
T ss_pred HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh------hcCcceEEecccchhhhhhhhhh-CC
Confidence 788999999999998764322 111111111222225555677 666 79999999999999994 4444 44
Q ss_pred ccChHHHHHHHHh
Q 023443 212 SQTLEEVARLEKV 224 (282)
Q Consensus 212 ~~~L~~L~l~~N~ 224 (282)
+++|++||+++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 4899999999997
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-15 Score=133.19 Aligned_cols=197 Identities=21% Similarity=0.202 Sum_probs=137.1
Q ss_pred EEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC-Cc
Q 023443 23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN-NR 99 (282)
Q Consensus 23 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~ 99 (282)
..+-++-.+++||..+ ...-..++|..|+|+.|| .|+.+++|+.|+|++|.|+.|.|+.|.++.+|..|-+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4567777888888654 357788999999999998 899999999999999999999999999999988887766 99
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHH--HH----------------------
Q 023443 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERME--AA---------------------- 155 (282)
Q Consensus 100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~--~~---------------------- 155 (282)
|+.+|. +.|+++.+|+.|.+.-|++..++.. .|..+++|..|.+..|... +.
T Consensus 128 I~~l~k-~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 128 ITDLPK-GAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhhhh-hHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 999998 7888888888888888888877766 4455555555544442110 00
Q ss_pred -----------------HhccChhHHHHHh----------------hh---ccccccCCCCCCCcchhhcCCCeeeCCCh
Q 023443 156 -----------------SLFASEEMEEEAK----------------KE---SMKTLMPVEVPNVSEEEEQQTPKVVAPTP 199 (282)
Q Consensus 156 -----------------~~~~~~~~~~~~~----------------~~---~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~ 199 (282)
.+|....+..+.. .. ......|..+....-...+++|++++|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 0111000110000 00 00011122222111125789999999999
Q ss_pred hHHHHHH-HHhhcccChHHHHHHHHhh
Q 023443 200 EQIIAIK-AAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 200 N~l~~ip-~~l~~~~~L~~L~l~~N~l 225 (282)
|+|+.|- .+|..+..+++|.+..|+|
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchH
Confidence 9999765 5788888888888777776
No 22
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.49 E-value=2.9e-15 Score=136.77 Aligned_cols=177 Identities=24% Similarity=0.336 Sum_probs=103.9
Q ss_pred CCCCCCceeEEEecCCccccccccccCCC-CCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
....++.++.|++.+|.++.||.....+. +|+.|++++|.+..+| .+..++.|+.|++++|+++.+++... .++.|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence 34444556666666666666666555553 6666666666666664 55666666666666666666655442 556666
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES 171 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~ 171 (282)
.|++++|+++.+|. ....+..|+.+.+++|++..++. .+..+.++..+.+++++...
T Consensus 190 ~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~----------------- 246 (394)
T COG4886 190 NLDLSGNKISDLPP--EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLED----------------- 246 (394)
T ss_pred heeccCCccccCch--hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeee-----------------
Confidence 66666666666665 33444456666666665444444 35555666555555544311
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
++..+. .+..++.|++++|+++.++. ++...+++.|++++|.+
T Consensus 247 ----~~~~~~------~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 247 ----LPESIG------NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ----ccchhc------cccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 122222 45566677777777776666 66666666666666655
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=3.8e-14 Score=144.94 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCCCceeEEEecCCccccccccccCCCCCcEEeccCCC-ccccCCCCCCCccCeEeccCC-cCcccCCCcccCCccccEE
Q 023443 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 93 (282)
..+.+|+.|++++|.|..++..+..+++|+.|+|+++. +..+|.+..+++|++|+|++| .+..+|..+ ..+++|+.|
T Consensus 608 f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L 686 (1153)
T PLN03210 608 FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDL 686 (1153)
T ss_pred CCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh-hccCCCCEE
Confidence 34566777777777777777666667777777777654 555666666667777777665 344454443 356666666
Q ss_pred eccCC-cCCCCC
Q 023443 94 VLTNN-RLVNLV 104 (282)
Q Consensus 94 ~L~~N-~l~~~~ 104 (282)
++++| .+..+|
T Consensus 687 ~L~~c~~L~~Lp 698 (1153)
T PLN03210 687 DMSRCENLEILP 698 (1153)
T ss_pred eCCCCCCcCccC
Confidence 66654 344444
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=1e-12 Score=134.51 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=139.1
Q ss_pred CCCCCCC-CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCc-CcccCCCcccCCc
Q 023443 12 SPHFFNA-IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNR-ITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 88 (282)
|..|..+ .+|+.|++.++.++.+|..+. +.+|+.|++++|.+..++ ++..+++|++|+|+++. +..+| . +..++
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~ 657 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMAT 657 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCC
Confidence 3344444 458888888888888887764 788999999999988886 77888999999998764 56665 3 35788
Q ss_pred cccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443 89 KLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE 166 (282)
Q Consensus 89 ~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~ 166 (282)
+|++|++++|. +..+|. .++.+++|+.|++++| .+..+|.. + ++++|+.|+++++..... +.........
T Consensus 658 ~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~-~p~~~~nL~~ 729 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKS-FPDISTNISW 729 (1153)
T ss_pred cccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccc-cccccCCcCe
Confidence 99999998874 667776 7888999999999885 57788873 3 678888888887432110 0000000000
Q ss_pred Hh-hhccccccCCCC----------------------CCCcc--hhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHH
Q 023443 167 AK-KESMKTLMPVEV----------------------PNVSE--EEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVAR 220 (282)
Q Consensus 167 ~~-~~~~~~~~p~~~----------------------~~~~~--~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l 220 (282)
+. ..+....+|..+ ..+.. ....++|+.|++++|... .+|.+++++++|+.|++
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 00 001111122211 00000 012357888888888544 79999999999999999
Q ss_pred HHHhhhCCCCCCCC
Q 023443 221 LEKVLKSGQLPADL 234 (282)
Q Consensus 221 ~~N~l~~g~iP~~l 234 (282)
+++.. .+.+|..+
T Consensus 810 s~C~~-L~~LP~~~ 822 (1153)
T PLN03210 810 ENCIN-LETLPTGI 822 (1153)
T ss_pred CCCCC-cCeeCCCC
Confidence 87542 27888776
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=2.1e-13 Score=109.76 Aligned_cols=120 Identities=33% Similarity=0.514 Sum_probs=37.4
Q ss_pred ecCCccccccccccCCCCCcEEeccCCCccccCCCC-CCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCC
Q 023443 26 LRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104 (282)
Q Consensus 26 Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 104 (282)
|..+.|+.++... ++.+++.|+|++|.|+.+..++ .+.+|+.|+|++|.|+.+. ++ ..++.|+.|++++|+|+.+.
T Consensus 4 lt~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQYN-NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-C
T ss_pred ccccccccccccc-cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccc
Confidence 4455566555433 3556788888888888887665 5778888888888888874 33 46788888888888888775
Q ss_pred CCCCC-CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 105 EIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 105 ~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
. .+ ..+++|+.|++++|+|..+.... .+..+++|+.|++.+|..
T Consensus 81 ~--~l~~~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 81 E--GLDKNLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp H--HHHHH-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GG
T ss_pred c--chHHhCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcc
Confidence 4 33 35778888888888887655422 366778888888887654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=4.4e-13 Score=122.37 Aligned_cols=184 Identities=24% Similarity=0.354 Sum_probs=149.1
Q ss_pred ccCHHHHhcCCCCCCCC--ceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCC-CCCccCeEeccCCcCccc
Q 023443 3 RLTADLIWKSPHFFNAI--KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRI 79 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~--~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~L~~N~l~~~ 79 (282)
.+..+.+.+.+...... +|+.|++++|.+..+|..+..+++|+.|++++|+++.+|... .++.|+.|++++|+++.+
T Consensus 122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccC
Confidence 34455566655555554 899999999999999988889999999999999999998544 899999999999999999
Q ss_pred CCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhcc
Q 023443 80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFA 159 (282)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~ 159 (282)
|+.+ ..+..|+++.+++|.+...+. .+..+.++..+.+.+|++..++. .++.++.+++|++++|.+
T Consensus 202 ~~~~-~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~----~~~~l~~l~~L~~s~n~i------- 267 (394)
T COG4886 202 PPEI-ELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSNNQI------- 267 (394)
T ss_pred chhh-hhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccc----hhccccccceeccccccc-------
Confidence 8875 256679999999997666665 78889999999999999998777 688999999999999774
Q ss_pred ChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHH
Q 023443 160 SEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARL 221 (282)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~ 221 (282)
..++. +. .+.+++.+++++|.++.+++....+..+......
T Consensus 268 --------------~~i~~-~~------~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T COG4886 268 --------------SSISS-LG------SLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308 (394)
T ss_pred --------------ccccc-cc------ccCccCEEeccCccccccchhhhccchhHHhhhh
Confidence 22232 33 6789999999999999777666666555554444
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.33 E-value=4.4e-13 Score=113.93 Aligned_cols=177 Identities=21% Similarity=0.279 Sum_probs=107.9
Q ss_pred CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-------------------------CCCCCccCeEecc
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-------------------------MPHLNRLGTLIIN 72 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------~~~l~~L~~L~L~ 72 (282)
+.+|+.+.+|++.-..|-+....-+.|+++.+.+..++..|. +.....|+.+||+
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 345555666665544444333334455555555554442211 1123446666666
Q ss_pred CCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 73 NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|.|+.+..++ .-.|.++.|++++|.|..+. .+..+++|+.|||++|.++.+.. +-..+.+.+.|.+++|.+
T Consensus 293 ~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~G----wh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 293 GNLITQIDESV-KLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECVG----WHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccchhhhhhhh-hhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhhh----hHhhhcCEeeeehhhhhH
Confidence 66666665555 25566666666666666553 35556666666666666666655 234455666666666543
Q ss_pred HHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhhhCCCC
Q 023443 153 EAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLKSGQL 230 (282)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l~~g~i 230 (282)
.. ++..+.+-+|..||+++|+|..+. ..|++++.|+.+.+.+|.+ ..+
T Consensus 365 E~----------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl--~~~ 414 (490)
T KOG1259|consen 365 ET----------------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL--AGS 414 (490)
T ss_pred hh----------------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc--ccc
Confidence 21 111135668999999999999776 5699999999999999999 666
Q ss_pred CC
Q 023443 231 PA 232 (282)
Q Consensus 231 P~ 232 (282)
|.
T Consensus 415 vd 416 (490)
T KOG1259|consen 415 VD 416 (490)
T ss_pred ch
Confidence 64
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=1.1e-14 Score=132.35 Aligned_cols=174 Identities=24% Similarity=0.334 Sum_probs=135.8
Q ss_pred cCHHHHhc-CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCC
Q 023443 4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP 81 (282)
Q Consensus 4 l~~~~i~~-~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~ 81 (282)
|+.+.+.. |..+..+..|..+.|..|.|..||..++++..|++|||+.|+++.+| .+..|+ |+.|-+++|+++.+|+
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc
Confidence 34444443 22355566788888888888888888888888889999999988887 555554 7888888999988888
Q ss_pred CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443 82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE 161 (282)
Q Consensus 82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 161 (282)
.+. .+..|..|+.+.|.+..+|+ .++++.+|+.|.+..|++..+|. .++.| .|..||+|.|+
T Consensus 161 ~ig-~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l~~lp~----El~~L-pLi~lDfScNk---------- 222 (722)
T KOG0532|consen 161 EIG-LLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHLEDLPE----ELCSL-PLIRLDFSCNK---------- 222 (722)
T ss_pred ccc-cchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhhhhCCH----HHhCC-ceeeeecccCc----------
Confidence 886 78888888999998888887 78888888888888888888888 56643 57778888877
Q ss_pred hHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhccc
Q 023443 162 EMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQ 213 (282)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~ 213 (282)
...+|-.|. +|+.|++|-|.+|.|..=|..|+-..
T Consensus 223 -----------is~iPv~fr------~m~~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 223 -----------ISYLPVDFR------KMRHLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred -----------eeecchhhh------hhhhheeeeeccCCCCCChHHHHhcc
Confidence 355777777 88888888888888888777764433
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.7e-13 Score=121.18 Aligned_cols=188 Identities=20% Similarity=0.221 Sum_probs=89.2
Q ss_pred CCCCCceeEEEecCCccc-cccccccCCC---CCcEEeccCCCcccc-----C-CCCCC-CccCeEeccCCcCcccC---
Q 023443 15 FFNAIKERELDLRGNKIA-VIENLGATED---QFDTIDLSDNEIVKL-----E-NMPHL-NRLGTLIINNNRITRIN--- 80 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~---~L~~L~Ls~N~l~~i-----~-~~~~l-~~L~~L~L~~N~l~~~~--- 80 (282)
+..+++|+.|++++|.+. ..+..+..+. +|++|++++|.++.. . .+..+ ++|+.|++++|.+++-.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344556666666666554 2222222222 266666666655521 1 23334 55666666666655210
Q ss_pred -CCcccCCccccEEeccCCcCCC-----CCCCCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHHH
Q 023443 81 -PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERME 153 (282)
Q Consensus 81 -~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~~ 153 (282)
...+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.++......+ ..+..+++|++|+++++...
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAE--GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHH--HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1122344556666666665552 111 23334556666666665552221100 13444556666666664432
Q ss_pred HHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-----HHHHHhhcccChHHHHHHHHhh
Q 023443 154 AASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..... ..... ++. ....|+.|++++|.++ .+...+..+++|+.+++++|.+
T Consensus 235 ~~~~~------~l~~~------~~~---------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 235 DAGAA------ALASA------LLS---------PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred hHHHH------HHHHH------Hhc---------cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 11000 00000 000 1246677777777663 4455566666777777777766
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=2e-13 Score=116.04 Aligned_cols=128 Identities=27% Similarity=0.293 Sum_probs=108.0
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
..|+.+|||+|.|+.|..+..-++.++.|++|+|.|..+..+..+++|+.|||++|.++.+.. +-..+.+.++|.|+.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh
Confidence 458899999999999998888889999999999999999888899999999999999998854 3347889999999999
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
.|..+. .++.+-+|..||+++|+|..+.... .++++|-|+++.+.+|.+
T Consensus 363 ~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIETLS---GLRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhh---hhHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCc
Confidence 988764 5778888999999999998665433 478889999888888654
No 31
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.23 E-value=7.5e-13 Score=121.68 Aligned_cols=193 Identities=24% Similarity=0.227 Sum_probs=124.7
Q ss_pred CCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-CCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
.+..+..+.+..|.|..+-..+..+.+|+.|++..|.|..+.. +..+++|++|++++|.|+.+.+- ..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l--~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL--STLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch--hhccchhhhee
Confidence 3555666667777777655556667778888888888877776 77778888888888887777442 35666778888
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH-HhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-ccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV-IHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE-SMK 173 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~-~~~ 173 (282)
++|.|+.+. .+..++.|+.+++++|.++.++. . ...+.+++.+++.+|.+.....+............ +..
T Consensus 148 ~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~----~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 148 SGNLISDIS---GLESLKSLKLLDLSYNRIVDIEN----DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred ccCcchhcc---CCccchhhhcccCCcchhhhhhh----hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 888877765 35557777788888888777765 2 35667777777777554433322222222111000 111
Q ss_pred cccCCCCCCCcchhhcC--CCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 174 TLMPVEVPNVSEEEEQQ--TPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 174 ~~~p~~~~~~~~~~~l~--~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..+-+ +. .+. .|+.+++++|.+..++..+..+..+..+++.+|.+
T Consensus 221 ~~~~~-l~------~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 221 SKLEG-LN------ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred eeccC-cc------cchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 11110 01 122 27788888888888877788888888888888887
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=8e-13 Score=116.82 Aligned_cols=136 Identities=21% Similarity=0.202 Sum_probs=74.9
Q ss_pred CCCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCcccc-------C-CCCCCCccCeEeccCCcCcccCCCc
Q 023443 17 NAIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKL-------E-NMPHLNRLGTLIINNNRITRINPNI 83 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i-------~-~~~~l~~L~~L~L~~N~l~~~~~~~ 83 (282)
.+..|++|+++++.++ .++..+...++++.|+++++.+... + .+..+++|+.|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3445777777777763 3444455566677777777766521 1 3455667777777777766433332
Q ss_pred ccCCcc---ccEEeccCCcCCCCCC---CCCCCCC-CCccEEEeeCCcCCccCC-chHHHHhhCCCCcEecCcccHH
Q 023443 84 GEFLPK---LHTLVLTNNRLVNLVE---IDPLTSL-PKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 84 ~~~l~~---L~~L~L~~N~l~~~~~---~~~~~~l-~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+..+.. |++|++++|+++.... ...+..+ ++|+.|++++|.++.-.. .....+..+++|+.|+++++.+
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 223333 7777777776653111 0123344 667777777777662110 0111355566677777766543
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=2.4e-11 Score=80.89 Aligned_cols=59 Identities=39% Similarity=0.638 Sum_probs=30.1
Q ss_pred ccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCc
Q 023443 65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124 (282)
Q Consensus 65 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 124 (282)
+|++|++++|+++.+++..|.++++|++|++++|.++.+++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 34455555555555555555455555555555555555544 345555555555555554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.16 E-value=3.3e-11 Score=80.21 Aligned_cols=58 Identities=36% Similarity=0.586 Sum_probs=35.3
Q ss_pred CCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443 43 QFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (282)
Q Consensus 43 ~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 100 (282)
+|++|++++|+|+.+| .|.++++|++|++++|.++.+++..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4555566666555554 455666666666666666666666666666666666666653
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.14 E-value=7.1e-12 Score=115.24 Aligned_cols=206 Identities=28% Similarity=0.287 Sum_probs=143.3
Q ss_pred cCHHHHhc-CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443 4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 4 l~~~~i~~-~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
+..+.|.. -..+..+.+|..|++.+|.|..|...+..+.+|++|++++|.|+.+.++..++.|+.|++++|.|+.+..
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~- 157 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG- 157 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-
Confidence 45667776 3448889999999999999999988677899999999999999999988899999999999999999854
Q ss_pred cccCCccccEEeccCCcCCCCCCCCC-CCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE 161 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 161 (282)
+..+..|+.+++++|+++.+.. . ...+.+++.+++.+|.+..+.. +..+..+..+++..|++....-....
T Consensus 158 -~~~l~~L~~l~l~~n~i~~ie~--~~~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~~~~l~~~ 229 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNRIVDIEN--DELSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISKLEGLNEL 229 (414)
T ss_pred -CccchhhhcccCCcchhhhhhh--hhhhhccchHHHhccCCchhcccc-----hHHHHHHHHhhcccccceeccCcccc
Confidence 2358999999999999998875 2 4788999999999999998765 33344444445555443322111111
Q ss_pred hH--HHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 162 EM--EEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 162 ~~--~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
.. ...+.. .+.....+..+. .+..+..+++..|++..+.. +.....+.++....|.+
T Consensus 230 ~~~~L~~l~l~~n~i~~~~~~~~------~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRSPEGLE------NLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL 289 (414)
T ss_pred hhHHHHHHhcccCcccccccccc------ccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence 11 111111 122222222233 56677777777777765532 44444555555555555
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=1e-12 Score=113.49 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=32.5
Q ss_pred hcCCCeeeCCChhHHHH-----HHHHhhcccChHHHHHHHHhh
Q 023443 188 EQQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 188 ~l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L~l~~N~l 225 (282)
..++|+++.|.+|.++. +-..+...+.|..|+++.|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35689999999999982 445678899999999999999
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.7e-11 Score=107.56 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=107.4
Q ss_pred CCCCceeEEEecCCcccccc---ccccCCCCCcEEeccCCCcccc-C--CCCCCCccCeEeccCCcCcccC-CCcccCCc
Q 023443 16 FNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKL-E--NMPHLNRLGTLIINNNRITRIN-PNIGEFLP 88 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~i-~--~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~ 88 (282)
..|++++.||||+|-|..+- .....+++|+.|+|+.|.+... . .-..+++|+.|.|+.|.++.-. ..+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34666666666666665322 3344566666666666666532 1 1224556666666666665411 12223566
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHh
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAK 168 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~ 168 (282)
+|+.|+|..|....... ....-+..|+.|+|++|++...+... ..+.++.|+.|+++.+++.....+
T Consensus 223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~~~---------- 289 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIAEP---------- 289 (505)
T ss_pred cHHHhhhhcccccceec-chhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhcCC----------
Confidence 66666666664222211 13344556666777777666555321 356666666666666543222211
Q ss_pred hhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhh
Q 023443 169 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 169 ~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l 225 (282)
+.+.. .....+++|++|+++.|+++..+ ..+..+++|+.|....|.+
T Consensus 290 --------d~~s~--~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 290 --------DVESL--DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred --------Cccch--hhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 11111 11135679999999999997655 5688888889888878877
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=1.8e-09 Score=104.02 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=57.6
Q ss_pred CcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443 44 FDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121 (282)
Q Consensus 44 L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 121 (282)
++.|+|++|.+++ +| .+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..+ ..++++++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECc
Confidence 5556666666654 34 55566666666666666665434334466666666666666664333 256666666666666
Q ss_pred CCcCC-ccCCchHHHHhh-CCCCcEecCcccH
Q 023443 122 DNSIT-KKPNYRLYVIHK-LKSLRVLDFKKER 151 (282)
Q Consensus 122 ~N~l~-~ip~~~~~~l~~-l~~L~~L~ls~~~ 151 (282)
+|+++ .+|. .+.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~----~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPA----ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCCh----HHhhccccCceEEecCCc
Confidence 66665 4554 3333 2344455555543
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.93 E-value=9.5e-12 Score=116.43 Aligned_cols=131 Identities=22% Similarity=0.235 Sum_probs=105.3
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
.+|...+.++|.+..+..++.-++.|+.|+|++|+++....+..|+.|++|||++|++..+|.-.-.+|. |+.|.+++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 3577888999999988888888899999999999999888888899999999999999998763333554 999999999
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA 155 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~ 155 (282)
.++.+. .+.++.+|+.||+++|-|.....-. .++.+..|+.|.|.+|.+.+.
T Consensus 243 ~l~tL~---gie~LksL~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALTTLR---GIENLKSLYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHhhh---hHHhhhhhhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCccccC
Confidence 998875 5778889999999999887543322 367778888889888665443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.83 E-value=7.7e-11 Score=110.50 Aligned_cols=133 Identities=28% Similarity=0.380 Sum_probs=105.2
Q ss_pred CCCCCCCCceeEEEecCCccccccc----------ccc----------------------CCCCCcEEeccCCCccccC-
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIEN----------LGA----------------------TEDQFDTIDLSDNEIVKLE- 58 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~----------~~~----------------------~l~~L~~L~Ls~N~l~~i~- 58 (282)
|-.++.+.+|++|.+.++.|...-+ .++ .+..|...++++|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 4467788899999999998753211 111 1345666788888888775
Q ss_pred CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhh
Q 023443 59 NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138 (282)
Q Consensus 59 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~ 138 (282)
++.-++.|+.|+|++|+++.+. ....|+.|++|||++|.++.+|.+ ...++. |+.|.+++|.++++-. +.+
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l-~~~gc~-L~~L~lrnN~l~tL~g-----ie~ 252 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL-SMVGCK-LQLLNLRNNALTTLRG-----IEN 252 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcccccc-chhhhh-heeeeecccHHHhhhh-----HHh
Confidence 6777889999999999999986 346899999999999999999874 445555 9999999999998875 789
Q ss_pred CCCCcEecCcccHHH
Q 023443 139 LKSLRVLDFKKERME 153 (282)
Q Consensus 139 l~~L~~L~ls~~~~~ 153 (282)
+.+|+.||+++|.+.
T Consensus 253 LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhhccchhHhhhh
Confidence 999999999997653
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=9.2e-09 Score=99.20 Aligned_cols=103 Identities=23% Similarity=0.241 Sum_probs=66.3
Q ss_pred eeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 21 ERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 21 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++..|..+..+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 666777777776 566666677777777777777763 45 566777777777777777765455455677777777777
Q ss_pred CcCCCCCCCCCCCC-CCCccEEEeeCCc
Q 023443 98 NRLVNLVEIDPLTS-LPKLQFLSLLDNS 124 (282)
Q Consensus 98 N~l~~~~~~~~~~~-l~~L~~L~L~~N~ 124 (282)
|.+++..+ ..++. +.++..+++.+|.
T Consensus 500 N~l~g~iP-~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVP-AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCC-hHHhhccccCceEEecCCc
Confidence 77764433 24443 2345566666665
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4e-10 Score=100.19 Aligned_cols=181 Identities=20% Similarity=0.168 Sum_probs=91.8
Q ss_pred CCCceeEEEecCCcccccc--ccccCCCCCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCC-CcccCCcc
Q 023443 17 NAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINP-NIGEFLPK 89 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 89 (282)
++.+|+.+.|.+..+...+ .....|++++.||||.|-|..+. -...+++|+.|+|+.|++..... ..-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4455555555555555433 23445556666666666555442 12345566666666665544221 11123455
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK 169 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~ 169 (282)
|+.|.|+.|.++.-.-......+++|..|+|..|....+... ...-+..|+.|||++|....
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N~li~--------------- 260 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNNNLID--------------- 260 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCCcccc---------------
Confidence 556666666555211101223455566666655532222211 12334455555555543211
Q ss_pred hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH--HHH-----hhcccChHHHHHHHHhh
Q 023443 170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI--KAA-----IVNSQTLEEVARLEKVL 225 (282)
Q Consensus 170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i--p~~-----l~~~~~L~~L~l~~N~l 225 (282)
.+ .....+.+++|..|+++.+.+++| |+. ....++|+.|++..|++
T Consensus 261 ------~~----~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 261 ------FD----QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ------cc----cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 11 001113677888888888888744 333 35667888888888888
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=2.9e-08 Score=98.48 Aligned_cols=104 Identities=26% Similarity=0.286 Sum_probs=49.9
Q ss_pred CCceeEEEecCCc--ccccc-ccccCCCCCcEEeccCCC-ccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443 18 AIKERELDLRGNK--IAVIE-NLGATEDQFDTIDLSDNE-IVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (282)
Q Consensus 18 l~~L~~L~Ls~N~--l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 92 (282)
+++|+.|-+.+|. +..++ ..|..++.|++|||++|. +..+| .++.+.+|++|++++..+..+|.++. ++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-NLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH-HHHhhhe
Confidence 3345555555553 34444 234445555555555444 44455 44555555555555555555555442 5555555
Q ss_pred EeccCCcCCCCCCCCCCCCCCCccEEEeeCC
Q 023443 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123 (282)
Q Consensus 93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N 123 (282)
|++..+.-...++ .....+++|++|.+..-
T Consensus 623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIP-GILLELQSLRVLRLPRS 652 (889)
T ss_pred ecccccccccccc-chhhhcccccEEEeecc
Confidence 5555544322222 13333555555555443
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.63 E-value=3.1e-08 Score=61.01 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=27.0
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN 59 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~ 59 (282)
++|++|++++|+|+.+|+.+..|++|++|++++|+|+.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35677777777777777666677777777777777766553
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.50 E-value=3.4e-09 Score=80.66 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=66.5
Q ss_pred ceeEEEecCCcccccccccc---CCCCCcEEeccCCCccccC-CCC-CCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 20 KERELDLRGNKIAVIENLGA---TEDQFDTIDLSDNEIVKLE-NMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~Ls~N~l~~i~-~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
.+..++|+.|+|-.|++... ....|+..+|++|.+..+| .|. ..+.++.|+|++|.|+.+|.. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 45566777777766664433 3345555666777666665 332 334666666666666666666 34666666666
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 130 (282)
++.|.+...|. .+..+.++-.|+..+|.+..||-
T Consensus 107 l~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccCccccchH--HHHHHHhHHHhcCCCCccccCcH
Confidence 66666666665 45556666666666666666665
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.50 E-value=4.6e-09 Score=79.94 Aligned_cols=103 Identities=24% Similarity=0.380 Sum_probs=89.8
Q ss_pred CCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEE
Q 023443 43 QFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118 (282)
Q Consensus 43 ~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 118 (282)
.+..+||+++++-.++ .+.....|+..+|++|.+..+|+.+-...+.++.|++++|.|+.+|. .+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhc
Confidence 4567899999988664 45677889999999999999999887777899999999999999998 79999999999
Q ss_pred EeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 119 SLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 119 ~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
+++.|++...|. .+..+.+|-+|+..++.
T Consensus 106 Nl~~N~l~~~p~----vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLNAEPR----VIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCccccchH----HHHHHHhHHHhcCCCCc
Confidence 999999999998 67778888888888754
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.47 E-value=1.3e-07 Score=79.42 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=94.8
Q ss_pred ccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCC--cCcc-cCCCcccCCccccEEeccCCcCCCCCCCCCCC
Q 023443 34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN--RITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT 110 (282)
Q Consensus 34 ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N--~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 110 (282)
+....-.+..|+.|.+.+..++.+-.|..|++|++|.++.| +++. ++.-+ ..+++|+++++++|+|+.+..+..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence 45555567788888888888888888889999999999999 5544 33333 46799999999999998755444667
Q ss_pred CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 111 ~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
.+.+|..|++.+|..+.+..++...|.-+++|++||-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 788899999999999999998888899999999999776
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.46 E-value=1e-07 Score=94.67 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=108.2
Q ss_pred CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCC--ccccC--CCCCCCccCeEeccCC-cCcccCCCcccCC
Q 023443 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE--IVKLE--NMPHLNRLGTLIINNN-RITRINPNIGEFL 87 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~--l~~i~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 87 (282)
+...+....+...+-+|.+..++.... ++.|++|-+..|. +..++ .|..++.|++|||++| .+..+|..+. .+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~L 594 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-EL 594 (889)
T ss_pred ccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hh
Confidence 445556788999999999998886654 5589999999997 67776 3889999999999988 5788888874 89
Q ss_pred ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcc
Q 023443 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
-+|++|++++..++.+|. .++.+.+|.+|++..+... .+|. ....+++|++|.+..
T Consensus 595 i~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEeec
Confidence 999999999999999998 9999999999999988754 4444 567799999998876
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=6.6e-08 Score=84.08 Aligned_cols=164 Identities=19% Similarity=0.187 Sum_probs=106.2
Q ss_pred CCCCCcEEeccCCCccc--cCC----CCCCCccCeEeccCCcCcccCCCc-------------ccCCccccEEeccCCcC
Q 023443 40 TEDQFDTIDLSDNEIVK--LEN----MPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNRL 100 (282)
Q Consensus 40 ~l~~L~~L~Ls~N~l~~--i~~----~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~l 100 (282)
.+++|++||||.|.|.. ++. +.+++.|++|+|.+|.+....... ...-+.|+++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 46688888888888763 332 456788888888888776532221 12346788888888888
Q ss_pred CCCCCC---CCCCCCCCccEEEeeCCcCCccCC-chHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443 101 VNLVEI---DPLTSLPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM 176 (282)
Q Consensus 101 ~~~~~~---~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (282)
..-+.. ..|...+.|+.+.++.|.|..-.. ..+..+.++++|+.|||..|...... ...+.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~La--------- 234 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALA--------- 234 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHH---------
Confidence 764431 135556788888888888763221 23346788899999999887643321 11111
Q ss_pred CCCCCCCcchhhcCCCeeeCCChhHHH-----HHHHHh-hcccChHHHHHHHHhh
Q 023443 177 PVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAI-VNSQTLEEVARLEKVL 225 (282)
Q Consensus 177 p~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~l-~~~~~L~~L~l~~N~l 225 (282)
..+. .++.|+.++++++.++ .+-.++ ...++|++|.+.+|.+
T Consensus 235 -kaL~------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 235 -KALS------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred -HHhc------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 1111 3457788888887775 344555 4568999999999887
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.43 E-value=7.8e-07 Score=67.87 Aligned_cols=121 Identities=15% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
..|.++++|+.+.+.. .+..|+ ..|..+.+|+.+.+..+ +..++ .|.++..++.+.+.. .+..++...|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4688888999999884 678887 67888888999999885 77775 688888899999965 777788888878899
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCc
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR 143 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~ 143 (282)
|+.+.+..+ +..++. ..|.++ +|+.+.+.. .+..|+.. .|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~~---~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEEN---AFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG------
T ss_pred ccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECCc---cccccccCC
Confidence 999999776 666666 577787 888888775 66777776 456666653
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=1.7e-07 Score=57.68 Aligned_cols=37 Identities=38% Similarity=0.614 Sum_probs=17.5
Q ss_pred CCcEEeccCCCccccCC-CCCCCccCeEeccCCcCccc
Q 023443 43 QFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRI 79 (282)
Q Consensus 43 ~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~ 79 (282)
+|++|++++|+|+.+|. +++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555543 45555555555555554443
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=8e-09 Score=87.34 Aligned_cols=101 Identities=24% Similarity=0.334 Sum_probs=80.7
Q ss_pred CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
|+|||..++.....-..+.+.+.|++.++.|..|. ....++.|++|.||-|.|+.+..|..|++|+.|+|..|.|..+.
T Consensus 1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD 79 (388)
T ss_pred CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH
Confidence 78899998887777777888999999999998765 22358889999999999999888888899999999999888875
Q ss_pred C-CcccCCccccEEeccCCcCCC
Q 023443 81 P-NIGEFLPKLHTLVLTNNRLVN 102 (282)
Q Consensus 81 ~-~~~~~l~~L~~L~L~~N~l~~ 102 (282)
+ ....++++|+.|.|..|.-.+
T Consensus 80 EL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 80 ELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHHHhcCchhhhHhhccCCccc
Confidence 4 223577777878777776544
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.21 E-value=1.6e-06 Score=70.25 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=79.7
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCcccc-CCCC-CCCccCeEeccCCcCcccCC-CcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMP-HLNRLGTLIINNNRITRINP-NIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i-~~~~-~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L 95 (282)
.+...+||++|.|..++. |..++.|.+|.+++|.|+.| |.+. -+++|+.|.|.+|+|..+.. .-...|+.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 356788999999987764 34588999999999999998 4554 45779999999999887532 12247889999999
Q ss_pred cCCcCCCCCCC--CCCCCCCCccEEEeeCC
Q 023443 96 TNNRLVNLVEI--DPLTSLPKLQFLSLLDN 123 (282)
Q Consensus 96 ~~N~l~~~~~~--~~~~~l~~L~~L~L~~N 123 (282)
-+|.++.-... ..+..+++|+.||+..=
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998876542 24567899999998754
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=4.8e-06 Score=75.40 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCceeEEEecCCccccccccccCCCCCcEEeccC-CCccccCC-CCCCCccCeEeccCC-cCcccCCCcccCCccccEEe
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLEN-MPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 94 (282)
+.+++.|++++|.|+.+|.. ..+|+.|.+++ +.++.+|. +. .+|++|.+++| .+..+|+ +|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------ccceEE
Confidence 46677777777777777621 33577777766 33555552 32 46777777776 5554443 355566
Q ss_pred ccCCcC
Q 023443 95 LTNNRL 100 (282)
Q Consensus 95 L~~N~l 100 (282)
++.+..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 655543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=8.3e-07 Score=76.00 Aligned_cols=64 Identities=27% Similarity=0.420 Sum_probs=48.5
Q ss_pred CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc-c--CCchHHHHhhCCCCcEecCcc
Q 023443 86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK-K--PNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 86 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-i--p~~~~~~l~~l~~L~~L~ls~ 149 (282)
.++.+..|+|+.|+|..+..++.+.++++|..|.+++|++.. + ...+|-.++++++++.|+-+.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 345666778888888887777788899999999999998872 2 222333578899999999876
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=2.3e-07 Score=78.43 Aligned_cols=113 Identities=25% Similarity=0.257 Sum_probs=55.7
Q ss_pred cCCCCCcEEeccCCCccc-cC-----CCCCCCccCeEeccCCcCcccCCCc-------------ccCCccccEEeccCCc
Q 023443 39 ATEDQFDTIDLSDNEIVK-LE-----NMPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNR 99 (282)
Q Consensus 39 ~~l~~L~~L~Ls~N~l~~-i~-----~~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~ 99 (282)
..|+.|+.++||.|.|.. .| -+++-+.|.+|.+++|.+..+..+- ...-|.|+......|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 345666666666666552 11 2345556666666666554332110 0133556666666666
Q ss_pred CCCCCCC---CCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccH
Q 023443 100 LVNLVEI---DPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 100 l~~~~~~---~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
+...+.. ..+..=..|+.+.+..|.|.. +..-.|..+..+.+|+.||+..|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 6544320 001111345666666666552 233333445556666666666644
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=7.5e-07 Score=76.27 Aligned_cols=198 Identities=18% Similarity=0.134 Sum_probs=109.6
Q ss_pred EEEecCCccccccc--cc-cCCCCCcEEeccCCCccccC----CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 23 ELDLRGNKIAVIEN--LG-ATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 23 ~L~Ls~N~l~~ip~--~~-~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
.|.+-++.|..+.+ .| ..++.++.+||.+|.|+.+. -+.+++.|++|++++|.+.......-..+.+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 44455555543331 22 34677888888888888764 2467888888888888887644333235668888888
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCcc--CCchHHHHhhC-CCCcEecCcccHHHHHHhccChhHHHHHhhhcc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKL-KSLRVLDFKKERMEAASLFASEEMEEEAKKESM 172 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l-~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~ 172 (282)
.+..+..-..-..+..++.++.|+++.|.+..+ ... ..... +.+++|..-.+.. ..|.......+....+++
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchh
Confidence 888765322212455677788888888855422 111 11111 1333333333211 111111111111111111
Q ss_pred ccccCCCCCCC---cchhhcCCCeeeCCChhHHHHHH--HHhhcccChHHHHHHHHhh
Q 023443 173 KTLMPVEVPNV---SEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 173 ~~~~p~~~~~~---~~~~~l~~L~~L~Ls~N~l~~ip--~~l~~~~~L~~L~l~~N~l 225 (282)
.-.....+.+. .....++.+..|+|+.|+|-... .++.+.++|..|.+.+|.+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 11111111111 11135667778999999997433 6789999999999999988
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=3e-07 Score=77.99 Aligned_cols=107 Identities=24% Similarity=0.310 Sum_probs=91.5
Q ss_pred CCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEe
Q 023443 41 EDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120 (282)
Q Consensus 41 l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 120 (282)
+.+.+.|++.++.|+.|.-...++.|++|.|+-|+|+.+.+ +..|++|+.|.|..|.|..+..+.-+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 56778899999999988766788999999999999999865 4589999999999999999887767889999999999
Q ss_pred eCCcCC--ccCCchHHHHhhCCCCcEecCcc
Q 023443 121 LDNSIT--KKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 121 ~~N~l~--~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
..|+-. .=+.++-..+.-+++|+.||--.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 999876 34455656788899999988554
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=1.1e-05 Score=68.51 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=104.9
Q ss_pred CCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCccc----c--------CCCCCCCccCeEeccCCcCcc-c
Q 023443 18 AIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVK----L--------ENMPHLNRLGTLIINNNRITR-I 79 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~----i--------~~~~~l~~L~~L~L~~N~l~~-~ 79 (282)
+..++.++||+|-|. .+...+.+-.+|+..+++.-.... + +.+..|+.|+..+||.|.|.. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455777778877776 234445556677777766544331 1 235567777777777777654 2
Q ss_pred CC---CcccCCccccEEeccCCcCCCCCCC------------CCCCCCCCccEEEeeCCcCCccCCchHH-HHhhCCCCc
Q 023443 80 NP---NIGEFLPKLHTLVLTNNRLVNLVEI------------DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLR 143 (282)
Q Consensus 80 ~~---~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~ 143 (282)
|+ ...+..+.|.+|.+++|.+..+... .....-+.|+.+....|++..-+..-+. .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 22 2234556677777777766543220 1122445677777777777655443111 122224566
Q ss_pred EecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHH-----HHHHhhcccChHHH
Q 023443 144 VLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEV 218 (282)
Q Consensus 144 ~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L 218 (282)
.+.+.+|.+.+..+- ..... .. ..+.+|++||+..|-|+. +..+++.|+.|.+|
T Consensus 189 ~vki~qNgIrpegv~----~L~~~-----------gl------~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 189 EVKIQQNGIRPEGVT----MLAFL-----------GL------FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred eEEeeecCcCcchhH----HHHHH-----------HH------HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 666666554332110 00000 01 256788899999998873 44667888888888
Q ss_pred HHHHHhh
Q 023443 219 ARLEKVL 225 (282)
Q Consensus 219 ~l~~N~l 225 (282)
.+....+
T Consensus 248 ~lnDCll 254 (388)
T COG5238 248 RLNDCLL 254 (388)
T ss_pred cccchhh
Confidence 7554433
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=3.5e-05 Score=69.90 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=28.6
Q ss_pred ceeEEEecC-CccccccccccCCCCCcEEeccCC-CccccCCCCCCCccCeEeccCCc
Q 023443 20 KERELDLRG-NKIAVIENLGATEDQFDTIDLSDN-EIVKLENMPHLNRLGTLIINNNR 75 (282)
Q Consensus 20 ~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N-~l~~i~~~~~l~~L~~L~L~~N~ 75 (282)
+|+.|.+++ +.++.+|..+ ..+|+.|++++| .+..+| ..|+.|+++++.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~ 123 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSA 123 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCC
Confidence 577777765 4555666544 346777777776 455554 235555555544
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.89 E-value=2.9e-05 Score=59.10 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=71.4
Q ss_pred ccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCC
Q 023443 33 VIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL 109 (282)
Q Consensus 33 ~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 109 (282)
.|+ ..|..+.+|+.+.+.. .+..++ .|.++++|+.+.+..+ +..++...|.++++++.+.+.+ .+..++. ..|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccc
Confidence 355 5677888999999985 677785 7889999999999885 8999999998998999999976 6666666 588
Q ss_pred CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 110 TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 110 ~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
..+++|+.+.+..+ +..++.. .|.++ +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~---~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSS---SFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTT---TTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchh---hhcCC-CceEEEECC
Confidence 88999999999876 7777776 45666 888887765
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.6e-05 Score=77.32 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=65.7
Q ss_pred ceeEEEecCCccc--ccc-ccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 20 KERELDLRGNKIA--VIE-NLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 20 ~L~~L~Ls~N~l~--~ip-~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
+|++|++++...- .-| .....+|+|+.|.+++-.+..-. -..++++|..||+|+.+++.+ .++ +.+.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHHH
Confidence 5666666664332 111 22234666666666665544321 234556666666666666655 333 356666666
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCc--h-HHHHhhCCCCcEecCcc
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--R-LYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~--~-~~~l~~l~~L~~L~ls~ 149 (282)
.+.+=.+.....+..+.+|++|++||+|.......+.. . ...-..+|+|+.||.|+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 66655555433333455666666666666554433210 0 00112356666666666
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=77.18 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=75.7
Q ss_pred CCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC--CCcccCCccccE
Q 023443 17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHT 92 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~ 92 (282)
-+|.|+.|.+++-.+. .+.....++++|..||+|+..++.+.+++++++|+.|.+.+=.+..-. ..+| ++++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCe
Confidence 3678888888877665 344555677888888888888888777788888888877665555421 2556 7888888
Q ss_pred EeccCCcCCCCCC-----CCCCCCCCCccEEEeeCCcCC
Q 023443 93 LVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 93 L~L~~N~l~~~~~-----~~~~~~l~~L~~L~L~~N~l~ 126 (282)
||+|.......+. ++.-..+++|+.||.|++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8888876554431 113345788888888877665
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=3.4e-05 Score=64.99 Aligned_cols=105 Identities=23% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCceeEEEecCCccccccccccCCCCCcEEeccCCCccc---cC-CCCCCCccCeEeccCCcCcccCC-CcccCCccccE
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK---LE-NMPHLNRLGTLIINNNRITRINP-NIGEFLPKLHT 92 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~---i~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 92 (282)
+..|+.|++.+..++.+... -.+++|+.|.+|.|.+.. ++ -...+++|+++++++|+|..+.. .-...+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 44667777777777654432 247899999999995442 33 33456999999999999875311 11236778899
Q ss_pred EeccCCcCCCCCCC--CCCCCCCCccEEEeeCC
Q 023443 93 LVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDN 123 (282)
Q Consensus 93 L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N 123 (282)
|++.+|..+.+... ..|.-+++|++|+-..-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999987775431 13556778887765443
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=2.2e-06 Score=73.54 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=115.2
Q ss_pred cccCHHHHhcCC--CCCCC--CceeEEEecCCccc--cccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccC
Q 023443 2 VRLTADLIWKSP--HFFNA--IKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINN 73 (282)
Q Consensus 2 ~~l~~~~i~~~~--~~~~l--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~ 73 (282)
.|+...++.+|. ..+.. +.|++||||+-.|+ .+...+..|.+|+.|.+.++++..- -.++.-.+|+.|+++.
T Consensus 164 ~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 164 FRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred EEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 355555555552 12222 35899999999998 5667778899999999999998863 2677778999999987
Q ss_pred C-cCcccC-CCcccCCccccEEeccCCcCCCCCCCCCCCC-CCCccEEEeeCCcCC----ccCCchHHHHhhCCCCcEec
Q 023443 74 N-RITRIN-PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS-LPKLQFLSLLDNSIT----KKPNYRLYVIHKLKSLRVLD 146 (282)
Q Consensus 74 N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~----~ip~~~~~~l~~l~~L~~L~ 146 (282)
+ .++... .-++.+|+.|..|+++.+.+..-.--..+.+ -.+|..|++++..-. .+.. ...++++|.+||
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t----L~~rcp~l~~LD 319 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST----LVRRCPNLVHLD 319 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH----HHHhCCceeeec
Confidence 5 455422 2346788999999999987664221001222 246788888876422 2222 356788898999
Q ss_pred CcccHHHHHHhccChhHHHHHhhh-cccc--ccCCCCCCCcchhhcCCCeeeCCCh
Q 023443 147 FKKERMEAASLFASEEMEEEAKKE-SMKT--LMPVEVPNVSEEEEQQTPKVVAPTP 199 (282)
Q Consensus 147 ls~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~p~~~~~~~~~~~l~~L~~L~Ls~ 199 (282)
||++.......|........++.+ .+.| ..|..+. ....++.|++|+..+
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL---ELNSKPSLVYLDVFG 372 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCCChHHee---eeccCcceEEEEecc
Confidence 988443322333222222222222 1112 2333322 113566788887654
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=4.1e-06 Score=71.87 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCC-ccccC---CCCCCCccCeEeccCCcCcccC--CCcccCC
Q 023443 15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNE-IVKLE---NMPHLNRLGTLIINNNRITRIN--PNIGEFL 87 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~-l~~i~---~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l 87 (282)
+..|.+|+.|.|.++++. .|-..+..-.+|+.|+++.+. |+.-. -+.+++.|..|+++++.+..-. ..+..--
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 345778899999999888 566667777889999998865 65442 4678889999999988765411 1111112
Q ss_pred ccccEEeccCCc--C--CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc
Q 023443 88 PKLHTLVLTNNR--L--VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE 150 (282)
Q Consensus 88 ~~L~~L~L~~N~--l--~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~ 150 (282)
++|..|++++.+ + +.+.- -...+++|.+|||++|.- +.+..|..|.+++.|++|.++.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhh
Confidence 467777777753 1 11111 234677788888877642 22244446677777777777763
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00078 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=14.8
Q ss_pred ceeEEEecCCccccccccccC
Q 023443 20 KERELDLRGNKIAVIENLGAT 40 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~ 40 (282)
+|++|++++|+|+.||..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467778888877777765543
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.34 E-value=7.6e-05 Score=62.12 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=64.7
Q ss_pred cccccc-ccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCC
Q 023443 30 KIAVIE-NLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107 (282)
Q Consensus 30 ~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 107 (282)
.++.|| ..+......+.||++.|++..+. .|.-++.|..|+++.|++..+|.+.. ....+..+++..|..+..|.
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~-q~~e~~~~~~~~n~~~~~p~-- 105 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK-QQRETVNAASHKNNHSQQPK-- 105 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH-HHHHHHHHHhhccchhhCCc--
Confidence 344566 45556667777777777776665 66667777777777777777766653 56667777777777777765
Q ss_pred CCCCCCCccEEEeeCCcCC
Q 023443 108 PLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 108 ~~~~l~~L~~L~L~~N~l~ 126 (282)
+++..+.++++++-.|.|.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 7777777777777777654
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0022 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=7.5
Q ss_pred cCeEeccCCcCcccCCC
Q 023443 66 LGTLIINNNRITRINPN 82 (282)
Q Consensus 66 L~~L~L~~N~l~~~~~~ 82 (282)
|++|++++|+|+.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.98 E-value=0.0049 Score=29.51 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=7.1
Q ss_pred ceeEEEecCCcccccc
Q 023443 20 KERELDLRGNKIAVIE 35 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip 35 (282)
+|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.73 E-value=0.0064 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCccCeEeccCCcCcccCCCcc
Q 023443 63 LNRLGTLIINNNRITRINPNIG 84 (282)
Q Consensus 63 l~~L~~L~L~~N~l~~~~~~~~ 84 (282)
+++|++|+|++|+|+.+|+++|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566677777777777766665
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.73 E-value=0.0064 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCccCeEeccCCcCcccCCCcc
Q 023443 63 LNRLGTLIINNNRITRINPNIG 84 (282)
Q Consensus 63 l~~L~~L~L~~N~l~~~~~~~~ 84 (282)
+++|++|+|++|+|+.+|+++|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566677777777777766665
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.58 E-value=0.00036 Score=58.20 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=78.0
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 92 (282)
.+......+.||++.|++-.+-..|..++.+..||++.|+|..+| .++.+..+..+++..|.++..|-+. ...+.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcch
Confidence 456677899999999999988888888899999999999999998 8899999999999999999997665 58999999
Q ss_pred EeccCCcCCC
Q 023443 93 LVLTNNRLVN 102 (282)
Q Consensus 93 L~L~~N~l~~ 102 (282)
+++-.|.+..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 9999998653
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.19 E-value=0.014 Score=27.92 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=5.9
Q ss_pred CccEEEeeCCcCCcc
Q 023443 114 KLQFLSLLDNSITKK 128 (282)
Q Consensus 114 ~L~~L~L~~N~l~~i 128 (282)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.31 E-value=0.03 Score=29.76 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=14.0
Q ss_pred CCCccEEEeeCCcCCccCCc
Q 023443 112 LPKLQFLSLLDNSITKKPNY 131 (282)
Q Consensus 112 l~~L~~L~L~~N~l~~ip~~ 131 (282)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777764
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.31 E-value=0.03 Score=29.76 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=14.0
Q ss_pred CCCccEEEeeCCcCCccCCc
Q 023443 112 LPKLQFLSLLDNSITKKPNY 131 (282)
Q Consensus 112 l~~L~~L~L~~N~l~~ip~~ 131 (282)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777764
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.79 E-value=0.044 Score=51.20 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=57.3
Q ss_pred CCCccCeEeccCCcCcccCC--CcccCCccccEEeccCC--cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHH---
Q 023443 62 HLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNN--RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY--- 134 (282)
Q Consensus 62 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~--- 134 (282)
+.+.+..+.|++|++..+.. .+....++|..|+|++| .+.....+..++++ .|+.|.+.+|++.+--..+-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence 34667778888888877643 23345688999999999 56555443344444 588999999998843322221
Q ss_pred -HHhhCCCCcEecCcc
Q 023443 135 -VIHKLKSLRVLDFKK 149 (282)
Q Consensus 135 -~l~~l~~L~~L~ls~ 149 (282)
.-..+|+|..||-..
T Consensus 295 ~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVE 310 (585)
T ss_pred HHHHhcchheeecCcc
Confidence 234678888887554
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.26 E-value=0.0009 Score=62.57 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCCeeeCCChhHHH-----HHHHHhhcccChHHHHHHHHhh
Q 023443 190 QTPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 190 ~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..+++++++.|.|+ .+...+..|+.++++.+..|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 35678888888876 3667788888999998888876
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.03 E-value=0.22 Score=26.61 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=8.5
Q ss_pred CCCcEEeccCCCccccC
Q 023443 42 DQFDTIDLSDNEIVKLE 58 (282)
Q Consensus 42 ~~L~~L~Ls~N~l~~i~ 58 (282)
.+|+.|+|++|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555554443
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.63 E-value=0.54 Score=25.07 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=10.1
Q ss_pred cccEEeccCCcCCCCCC
Q 023443 89 KLHTLVLTNNRLVNLVE 105 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~ 105 (282)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666666654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.21 E-value=0.67 Score=23.87 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=5.7
Q ss_pred CCCcEEeccCCCcc
Q 023443 42 DQFDTIDLSDNEIV 55 (282)
Q Consensus 42 ~~L~~L~Ls~N~l~ 55 (282)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=0.13 Score=42.14 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=42.5
Q ss_pred ccCeEeccCCcCcccCCCcccCCccccEEeccCCc-CCCCCCCCCCC-CCCCccEEEeeCCc-CCccCCchHHHHhhCCC
Q 023443 65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLT-SLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKS 141 (282)
Q Consensus 65 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~ 141 (282)
.++.++-++..|..+.-.-+.+++.++.|.+.++. +.... +.-++ ..++|+.|++++|+ |+ ......+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT---~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRIT---DGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeec---hhHHHHHHHhhh
Confidence 34555555555555433333455555555555553 11110 01111 24677888887664 44 333336777777
Q ss_pred CcEecCcc
Q 023443 142 LRVLDFKK 149 (282)
Q Consensus 142 L~~L~ls~ 149 (282)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77777766
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=79.89 E-value=0.33 Score=44.99 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCceeEEEecCC-cccc--ccccccCCCCCcEEeccCC--CccccC-----CCCCCCccCeEeccCCc-CcccC-CCccc
Q 023443 18 AIKERELDLRGN-KIAV--IENLGATEDQFDTIDLSDN--EIVKLE-----NMPHLNRLGTLIINNNR-ITRIN-PNIGE 85 (282)
Q Consensus 18 l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls~N--~l~~i~-----~~~~l~~L~~L~L~~N~-l~~~~-~~~~~ 85 (282)
++.|+.|.+..+ .+.. +-.....++.|+.|+++++ .+...+ ....+.+|+.|++++.. ++... ..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555554 2332 3334445666777777652 111111 12344666666666665 44321 11222
Q ss_pred CCccccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCCcC
Q 023443 86 FLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSI 125 (282)
Q Consensus 86 ~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 125 (282)
.+++|+.|.+.++. ++...-......++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35666666655554 33221111233456667777666544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.78 E-value=0.83 Score=43.03 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCCCCcEEeccCCCccccCCC----CCCCccCeEeccCC--cCcccCCCcccCCccccEEeccCCcCCC
Q 023443 40 TEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNN--RITRINPNIGEFLPKLHTLVLTNNRLVN 102 (282)
Q Consensus 40 ~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 102 (282)
+.+.+..+.|++|++..+..+ ...++|+.|+|++| .+...++----+...|+.|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 455666677777777766432 23467777777777 4433221111123457777777777654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.28 E-value=2.4 Score=22.84 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=7.3
Q ss_pred CCcEEeccCCCcc
Q 023443 43 QFDTIDLSDNEIV 55 (282)
Q Consensus 43 ~L~~L~Ls~N~l~ 55 (282)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.01 E-value=0.91 Score=37.38 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=56.6
Q ss_pred cccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccCCcCcc--cCCCcccCCccccEEeccCC-cCCCCCCCC
Q 023443 33 VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITR--INPNIGEFLPKLHTLVLTNN-RLVNLVEID 107 (282)
Q Consensus 33 ~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 107 (282)
++|.....-..++.+|-++..|... ..+.+++.++.|.+.++.--+ --..+....++|+.|++++| +||.-.- .
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~ 170 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-A 170 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-H
Confidence 3443322334577888888888755 367788888888887764222 01122234578999999977 4775432 4
Q ss_pred CCCCCCCccEEEeeC
Q 023443 108 PLTSLPKLQFLSLLD 122 (282)
Q Consensus 108 ~~~~l~~L~~L~L~~ 122 (282)
.+..+++|+.|.+.+
T Consensus 171 ~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHhhhhHHHHhcC
Confidence 666778888777654
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.63 E-value=0.69 Score=42.85 Aligned_cols=108 Identities=23% Similarity=0.209 Sum_probs=71.3
Q ss_pred CCCCCcEEeccCCC-ccc--c-CCCCCCCccCeEeccCC--cCcccC---CCcccCCccccEEeccCCc-CCCCCCCCCC
Q 023443 40 TEDQFDTIDLSDNE-IVK--L-ENMPHLNRLGTLIINNN--RITRIN---PNIGEFLPKLHTLVLTNNR-LVNLVEIDPL 109 (282)
Q Consensus 40 ~l~~L~~L~Ls~N~-l~~--i-~~~~~l~~L~~L~L~~N--~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 109 (282)
.++.|+.|.+.... +.. + +....++.|+.|+++++ .+...+ ......+.+|+.|++++.. ++...- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 46788888888774 443 3 34567899999999873 222222 1234567899999999988 554321 233
Q ss_pred C-CCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCccc
Q 023443 110 T-SLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKE 150 (282)
Q Consensus 110 ~-~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~ 150 (282)
. .+++|+.|.+.++. ++.-. -......++.|+.|++++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~g--l~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEG--LVSIAERCPSLRELDLSGC 305 (482)
T ss_pred HhhCCCcceEccCCCCccchhH--HHHHHHhcCcccEEeeecC
Confidence 3 37899999977666 44211 1114567889999999983
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=71.86 E-value=2.3 Score=38.93 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=86.9
Q ss_pred CCCceeEEEecCCc-cc--cccccccCCCCCcEEeccCCC-ccccC--CC-CCCCccCeEeccCCcCccc--CCCcccCC
Q 023443 17 NAIKERELDLRGNK-IA--VIENLGATEDQFDTIDLSDNE-IVKLE--NM-PHLNRLGTLIINNNRITRI--NPNIGEFL 87 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~Ls~N~-l~~i~--~~-~~l~~L~~L~L~~N~l~~~--~~~~~~~l 87 (282)
++.+|++|+.+++. ++ .+.....+..+|++|-++.++ ++... .+ .+.+.|+.+++.......- -.....++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 46788999998764 33 233455678999999999988 55442 23 4678899999987754321 12233488
Q ss_pred ccccEEeccCCcCCCCCCCC----CCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 88 PKLHTLVLTNNRLVNLVEID----PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 88 ~~L~~L~L~~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
+.|+.|.++++.+..-..+. .-.+...|..+.|++.+... ......+..+++|+.+++-+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNLERIELID 435 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCcccceeeeec
Confidence 99999999988643221101 22356678899999887652 22222467788888888776
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.70 E-value=2.5 Score=38.63 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=78.1
Q ss_pred ceeEEEecCC-cccccc--ccccCCCCCcEEeccCCCc-cccC--CC-CCCCccCeEeccCCc-CcccCC-CcccCCccc
Q 023443 20 KERELDLRGN-KIAVIE--NLGATEDQFDTIDLSDNEI-VKLE--NM-PHLNRLGTLIINNNR-ITRINP-NIGEFLPKL 90 (282)
Q Consensus 20 ~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~N~l-~~i~--~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L 90 (282)
.+..+++.++ .++... ..-..+..|++|+.++..- +..+ .+ .+..+|+.+-++.++ ++...- .+..+++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 3555565554 344222 3335678889999888764 3222 33 467889999988775 444321 233578889
Q ss_pred cEEeccCCcCCCCCCCC-CCCCCCCccEEEeeCCcCCccCCchHH--HHhhCCCCcEecCcccHHHH
Q 023443 91 HTLVLTNNRLVNLVEID-PLTSLPKLQFLSLLDNSITKKPNYRLY--VIHKLKSLRVLDFKKERMEA 154 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~ip~~~~~--~l~~l~~L~~L~ls~~~~~~ 154 (282)
+.+++..........+. .-.+++.|+.+.++++...+-...+.. .-..+..|..+.+++.....
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 99998888654322111 223688899999987654321100000 12445678888888744433
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.57 E-value=4.5 Score=45.37 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=15.1
Q ss_pred eccCCCccccC--CCCCCCccCeEeccCCcC
Q 023443 48 DLSDNEIVKLE--NMPHLNRLGTLIINNNRI 76 (282)
Q Consensus 48 ~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l 76 (282)
||++|+|+.+| .|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 34555555554 345555555555555543
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=57.71 E-value=0.47 Score=44.61 Aligned_cols=111 Identities=23% Similarity=0.240 Sum_probs=79.3
Q ss_pred CCCCCceeEEEecCCccc-----cccccc----cCCCCCcEEeccCCCccccC------CCCCCCc-cCeEeccCCcCcc
Q 023443 15 FFNAIKERELDLRGNKIA-----VIENLG----ATEDQFDTIDLSDNEIVKLE------NMPHLNR-LGTLIINNNRITR 78 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~-----~ip~~~----~~l~~L~~L~Ls~N~l~~i~------~~~~l~~-L~~L~L~~N~l~~ 78 (282)
+.....++.++++.|.+. .++..+ ....++++|.+++|.++... .+...+. +..+++..|++..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 445778899999999884 233333 35788999999999988431 3555555 7779999999875
Q ss_pred c-----CCCcccCC-ccccEEeccCCcCCCCCCC---CCCCCCCCccEEEeeCCcCC
Q 023443 79 I-----NPNIGEFL-PKLHTLVLTNNRLVNLVEI---DPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 79 ~-----~~~~~~~l-~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~L~~N~l~ 126 (282)
. .+. +..+ ..++.++++.|.|+..... ..+..+..++.+.++.|.+.
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 222 2344 6789999999999864320 14556778999999999887
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.14 E-value=9.2 Score=43.10 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=31.5
Q ss_pred eccCCcCcccCCCcccCCccccEEeccCCcCCCCCC
Q 023443 70 IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105 (282)
Q Consensus 70 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 105 (282)
||++|+|+.|+++.|..+++|+.|+|++|.+..--.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 589999999999999999999999999998875443
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.17 E-value=38 Score=17.49 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=4.7
Q ss_pred CCcEEeccCC
Q 023443 43 QFDTIDLSDN 52 (282)
Q Consensus 43 ~L~~L~Ls~N 52 (282)
+|+.|+|+++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 94
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=29.43 E-value=48 Score=17.66 Aligned_cols=19 Identities=47% Similarity=0.557 Sum_probs=14.3
Q ss_pred chHHHHhhCCCCcEecCcc
Q 023443 131 YRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 131 ~~~~~l~~l~~L~~L~ls~ 149 (282)
++-..+..+++|+.||...
T Consensus 4 YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 4 YREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHHHHCCccceecccc
Confidence 3445788999999998653
Done!