Query 023443
Match_columns 282
No_of_seqs 440 out of 2366
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 9.7E-28 3.3E-32 212.5 3.7 207 13-252 98-315 (328)
2 3rfs_A Internalin B, repeat mo 99.9 5.1E-26 1.8E-30 196.0 14.2 201 3-242 47-250 (272)
3 1a9n_A U2A', U2A'; complex (nu 99.9 4.3E-24 1.5E-28 172.2 12.6 152 1-152 1-152 (176)
4 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.8E-30 199.2 2.5 204 18-256 80-295 (328)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-25 1.8E-29 190.6 5.3 198 18-225 31-237 (285)
6 2o6q_A Variable lymphocyte rec 99.9 9.5E-25 3.2E-29 187.8 5.9 176 19-225 37-217 (270)
7 3rfs_A Internalin B, repeat mo 99.9 4.4E-25 1.5E-29 190.2 1.9 188 11-231 33-222 (272)
8 2z66_A Variable lymphocyte rec 99.9 3.1E-25 1.1E-29 193.9 0.3 220 19-249 28-259 (306)
9 1ozn_A Reticulon 4 receptor; N 99.9 1E-24 3.5E-29 188.8 3.5 213 22-248 14-235 (285)
10 3zyj_A Leucine-rich repeat-con 99.9 3.3E-24 1.1E-28 196.8 6.9 187 14-234 83-274 (440)
11 1p9a_G Platelet glycoprotein I 99.9 2.3E-24 7.7E-29 187.6 5.2 176 19-225 31-207 (290)
12 1p9a_G Platelet glycoprotein I 99.9 2.3E-24 7.9E-29 187.6 5.3 194 14-244 5-201 (290)
13 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-26 2E-30 199.7 -5.3 126 20-150 51-184 (313)
14 3zyi_A Leucine-rich repeat-con 99.9 3.6E-24 1.2E-28 197.2 5.8 204 19-234 75-285 (452)
15 3rgz_A Protein brassinosteroid 99.9 9.6E-25 3.3E-29 213.5 1.8 230 12-253 411-719 (768)
16 2z62_A TOLL-like receptor 4, v 99.9 2.8E-24 9.7E-29 185.2 4.5 201 19-231 28-241 (276)
17 3rgz_A Protein brassinosteroid 99.9 4.7E-25 1.6E-29 215.7 -0.9 222 4-233 425-723 (768)
18 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-25 9E-30 195.5 -2.6 222 12-248 69-301 (313)
19 2o6s_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 165.1 16.1 178 22-239 10-190 (208)
20 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 181.2 7.1 196 19-249 16-216 (270)
21 1xku_A Decorin; proteoglycan, 99.9 2.9E-24 1E-28 189.7 3.5 126 19-151 52-182 (330)
22 2z80_A TOLL-like receptor 2, v 99.9 6.4E-25 2.2E-29 195.8 -1.2 226 15-249 72-312 (353)
23 3oja_B Anopheles plasmodium-re 99.9 5.9E-25 2E-29 209.3 -1.7 114 15-129 71-187 (597)
24 3zyi_A Leucine-rich repeat-con 99.9 1.1E-23 3.9E-28 193.9 6.4 221 20-254 55-282 (452)
25 3o6n_A APL1; leucine-rich repe 99.9 1.9E-25 6.5E-30 201.8 -5.9 113 15-128 65-180 (390)
26 1h6u_A Internalin H; cell adhe 99.9 3.1E-24 1.1E-28 188.3 1.8 185 8-234 52-236 (308)
27 3zyj_A Leucine-rich repeat-con 99.9 1.1E-23 3.7E-28 193.4 5.1 203 19-254 64-271 (440)
28 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-23 4.8E-28 185.6 5.6 124 19-150 54-182 (332)
29 2z62_A TOLL-like receptor 4, v 99.9 7.4E-24 2.5E-28 182.6 3.4 213 23-249 11-235 (276)
30 3oja_B Anopheles plasmodium-re 99.9 8E-24 2.7E-28 201.5 3.8 215 3-231 81-340 (597)
31 3m19_A Variable lymphocyte rec 99.9 2.3E-23 7.8E-28 177.3 5.1 155 19-204 35-193 (251)
32 2id5_A Lingo-1, leucine rich r 99.9 4E-24 1.4E-28 197.9 0.4 135 13-151 50-187 (477)
33 3o6n_A APL1; leucine-rich repe 99.9 3.3E-23 1.1E-27 187.0 6.4 230 4-249 76-350 (390)
34 2xwt_C Thyrotropin receptor; s 99.9 1.2E-23 4.1E-28 177.6 3.2 181 18-233 30-223 (239)
35 4eco_A Uncharacterized protein 99.9 5.9E-24 2E-28 203.9 -0.2 240 3-253 311-581 (636)
36 1wwl_A Monocyte differentiatio 99.9 2.8E-24 9.4E-29 188.8 -2.7 202 17-248 93-306 (312)
37 1xku_A Decorin; proteoglycan, 99.9 4.7E-23 1.6E-27 182.0 5.0 216 3-235 58-283 (330)
38 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 166.5 13.2 177 19-229 14-194 (251)
39 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.4E-28 183.6 0.7 217 22-252 10-237 (306)
40 3v47_A TOLL-like receptor 5B a 99.9 7.4E-23 2.5E-27 188.0 5.7 89 15-103 75-169 (455)
41 3oja_A Leucine-rich immune mol 99.9 8.2E-24 2.8E-28 196.8 -1.0 212 17-249 32-248 (487)
42 4glp_A Monocyte differentiatio 99.9 4.1E-24 1.4E-28 187.4 -3.0 206 15-248 87-304 (310)
43 4eco_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 198.7 2.1 233 4-250 337-599 (636)
44 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5.3E-28 199.3 -0.3 203 14-249 345-556 (606)
45 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-22 1.3E-26 175.5 8.4 210 14-236 53-285 (317)
46 4ecn_A Leucine-rich repeat pro 99.9 4.8E-23 1.7E-27 202.8 2.9 235 4-249 580-838 (876)
47 2z80_A TOLL-like receptor 2, v 99.9 8.6E-23 2.9E-27 182.0 3.9 178 19-225 52-234 (353)
48 2ft3_A Biglycan; proteoglycan, 99.9 5E-23 1.7E-27 182.0 2.3 214 4-235 61-284 (332)
49 2id5_A Lingo-1, leucine rich r 99.9 5.5E-24 1.9E-28 197.0 -4.3 219 4-234 63-315 (477)
50 1h6u_A Internalin H; cell adhe 99.9 3.2E-23 1.1E-27 181.8 0.4 194 14-250 36-229 (308)
51 2o6s_A Variable lymphocyte rec 99.9 5.6E-22 1.9E-26 163.8 7.4 130 18-151 27-159 (208)
52 3v47_A TOLL-like receptor 5B a 99.9 9.6E-23 3.3E-27 187.2 2.9 145 4-152 86-335 (455)
53 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-23 8E-28 183.2 -1.2 214 16-250 31-249 (317)
54 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.4E-27 178.6 4.8 206 3-225 50-255 (347)
55 3t6q_A CD180 antigen; protein- 99.9 4.3E-22 1.5E-26 189.3 6.8 133 14-150 52-189 (606)
56 4ecn_A Leucine-rich repeat pro 99.8 1.7E-22 5.6E-27 199.0 3.4 229 15-254 544-822 (876)
57 3t6q_A CD180 antigen; protein- 99.8 7.5E-23 2.5E-27 194.6 0.8 225 14-249 273-511 (606)
58 2xwt_C Thyrotropin receptor; s 99.8 5.7E-23 1.9E-27 173.4 -1.0 182 4-220 38-233 (239)
59 1h6t_A Internalin B; cell adhe 99.8 6E-23 2.1E-27 178.7 -1.0 179 12-232 39-217 (291)
60 2ca6_A RAN GTPase-activating p 99.8 3.8E-24 1.3E-28 193.0 -10.0 201 14-225 55-315 (386)
61 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-21 5.7E-26 179.9 7.0 187 9-225 54-245 (457)
62 1ziw_A TOLL-like receptor 3; i 99.8 3.2E-22 1.1E-26 192.7 2.0 224 15-247 45-305 (680)
63 1o6v_A Internalin A; bacterial 99.8 7.2E-22 2.5E-26 182.5 3.6 140 4-151 53-210 (466)
64 3vq2_A TLR4, TOLL-like recepto 99.8 2.5E-22 8.6E-27 190.9 0.2 189 12-231 369-562 (606)
65 2v9t_B SLIT homolog 2 protein 99.8 3.5E-20 1.2E-24 154.7 13.1 144 4-152 18-164 (220)
66 1wwl_A Monocyte differentiatio 99.8 1.2E-22 4.2E-27 178.2 -2.3 190 4-225 102-308 (312)
67 4fmz_A Internalin; leucine ric 99.8 1.6E-21 5.4E-26 173.1 4.3 229 3-248 94-343 (347)
68 3oja_A Leucine-rich immune mol 99.8 5.2E-21 1.8E-25 177.9 8.0 216 3-231 40-280 (487)
69 2v9t_B SLIT homolog 2 protein 99.8 5.5E-20 1.9E-24 153.5 12.4 150 22-204 14-166 (220)
70 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 152.5 13.8 151 20-204 20-173 (229)
71 2z7x_B TOLL-like receptor 1, v 99.8 3E-21 1E-25 180.3 4.5 61 188-249 346-410 (520)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.2E-21 2.5E-25 179.7 7.0 105 19-126 52-159 (562)
73 1o6v_A Internalin A; bacterial 99.8 2.4E-21 8.3E-26 179.0 3.1 201 14-234 194-394 (466)
74 2xot_A Amphoterin-induced prot 99.8 3.8E-21 1.3E-25 172.2 4.1 132 19-151 39-174 (361)
75 3e6j_A Variable lymphocyte rec 99.8 9.8E-20 3.4E-24 152.9 12.4 142 5-152 27-171 (229)
76 2z81_A CD282 antigen, TOLL-lik 99.8 4E-21 1.4E-25 180.5 4.2 178 19-225 26-208 (549)
77 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-21 6.1E-26 185.0 1.8 131 19-152 52-185 (635)
78 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-21 5.8E-26 183.0 1.4 123 4-127 33-162 (549)
79 1ziw_A TOLL-like receptor 3; i 99.8 1E-20 3.6E-25 182.1 6.9 112 14-126 400-517 (680)
80 3j0a_A TOLL-like receptor 5; m 99.8 7E-21 2.4E-25 188.0 5.7 219 19-250 266-538 (844)
81 3cvr_A Invasion plasmid antige 99.8 1.5E-21 5E-26 184.4 0.7 172 19-235 80-251 (571)
82 3bz5_A Internalin-J, INLJ; leu 99.8 5.2E-21 1.8E-25 176.5 4.1 213 12-253 35-248 (457)
83 2v70_A SLIT-2, SLIT homolog 2 99.8 7.6E-20 2.6E-24 152.7 10.7 150 22-203 14-166 (220)
84 2ell_A Acidic leucine-rich nuc 99.8 9.9E-20 3.4E-24 145.2 10.8 136 16-151 21-158 (168)
85 4ezg_A Putative uncharacterize 99.8 3.6E-20 1.2E-24 151.8 8.3 154 16-204 41-195 (197)
86 2z63_A TOLL-like receptor 4, v 99.8 1.9E-21 6.6E-26 183.2 0.6 129 19-152 28-161 (570)
87 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.4E-24 150.7 12.2 145 3-152 17-165 (220)
88 1h6t_A Internalin B; cell adhe 99.8 5.5E-20 1.9E-24 159.9 8.7 165 3-206 52-216 (291)
89 2z63_A TOLL-like receptor 4, v 99.8 1.5E-21 5.2E-26 183.9 -1.3 180 16-225 322-506 (570)
90 1m9s_A Internalin B; cell inva 99.8 1.8E-21 6.1E-26 185.2 -0.9 175 11-225 35-209 (605)
91 4g8a_A TOLL-like receptor 4; l 99.8 7.9E-21 2.7E-25 180.6 3.1 183 22-237 34-223 (635)
92 1xeu_A Internalin C; cellular 99.8 4.8E-22 1.6E-26 170.5 -4.8 168 17-225 17-184 (263)
93 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-21 1.6E-25 179.1 1.2 200 16-249 273-479 (520)
94 4ay9_X Follicle-stimulating ho 99.8 8E-21 2.7E-25 169.3 2.7 202 18-232 29-241 (350)
95 2je0_A Acidic leucine-rich nuc 99.8 1.3E-19 4.3E-24 141.7 9.1 134 16-149 14-149 (149)
96 4glp_A Monocyte differentiatio 99.8 1.4E-21 4.7E-26 171.3 -2.8 176 16-225 114-306 (310)
97 1xeu_A Internalin C; cellular 99.8 4.7E-20 1.6E-24 158.1 6.4 162 6-207 28-189 (263)
98 1jl5_A Outer protein YOPM; leu 99.8 1.7E-19 6E-24 166.2 10.3 208 3-238 179-422 (454)
99 2ca6_A RAN GTPase-activating p 99.8 1.5E-22 5.1E-27 182.6 -11.1 222 5-234 17-298 (386)
100 3j0a_A TOLL-like receptor 5; m 99.8 5.5E-20 1.9E-24 181.6 6.2 117 13-129 42-164 (844)
101 3g06_A SSPH2 (leucine-rich rep 99.8 2.9E-20 9.9E-25 177.3 3.9 36 190-225 261-296 (622)
102 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.3E-20 8E-25 176.2 3.1 183 18-233 275-491 (562)
103 2xot_A Amphoterin-induced prot 99.8 5.7E-19 1.9E-23 158.0 10.8 133 15-151 59-200 (361)
104 1w8a_A SLIT protein; signaling 99.8 6.9E-19 2.4E-23 143.7 10.0 125 22-152 11-138 (192)
105 1m9s_A Internalin B; cell inva 99.8 6.2E-19 2.1E-23 167.8 11.1 166 2-206 48-213 (605)
106 2wfh_A SLIT homolog 2 protein 99.8 2.2E-18 7.6E-23 140.9 11.7 125 22-152 13-138 (193)
107 1jl5_A Outer protein YOPM; leu 99.8 2.4E-19 8.3E-24 165.2 6.2 181 19-233 91-275 (454)
108 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.7E-23 143.0 8.8 141 3-152 50-193 (197)
109 4b8c_D Glucose-repressible alc 99.8 4.9E-19 1.7E-23 172.0 6.5 186 18-238 172-365 (727)
110 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-19 1.8E-23 168.7 6.1 204 19-249 61-295 (622)
111 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.9E-24 161.1 2.1 209 13-236 4-223 (350)
112 3cvr_A Invasion plasmid antige 99.8 2.5E-18 8.6E-23 162.3 10.6 168 3-213 86-254 (571)
113 2wfh_A SLIT homolog 2 protein 99.7 1.1E-17 3.8E-22 136.7 10.8 123 3-127 16-140 (193)
114 2o6r_A Variable lymphocyte rec 99.7 3E-17 1E-21 131.9 13.0 127 20-152 8-136 (177)
115 1w8a_A SLIT protein; signaling 99.7 6E-17 2.1E-21 132.1 10.6 123 3-127 14-140 (192)
116 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.8E-22 161.2 8.1 181 29-225 211-403 (727)
117 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.9E-21 127.9 11.8 124 4-129 14-140 (177)
118 1dce_A Protein (RAB geranylger 99.7 5.9E-17 2E-21 153.1 11.0 124 20-147 442-567 (567)
119 3g39_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 125.4 11.5 108 20-130 10-119 (170)
120 2r9u_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 125.1 11.9 107 21-130 14-122 (174)
121 3goz_A Leucine-rich repeat-con 99.7 1.1E-18 3.6E-23 156.2 -4.4 211 15-225 46-296 (362)
122 1a9n_A U2A', U2A'; complex (nu 99.7 1E-16 3.5E-21 128.8 7.5 144 37-208 14-158 (176)
123 3goz_A Leucine-rich repeat-con 99.7 6.5E-19 2.2E-23 157.6 -6.6 230 17-249 20-295 (362)
124 2ell_A Acidic leucine-rich nuc 99.6 6.8E-17 2.3E-21 128.7 4.6 106 41-151 23-131 (168)
125 2ast_B S-phase kinase-associat 99.6 1E-17 3.5E-22 147.7 -3.4 175 19-224 70-258 (336)
126 3sb4_A Hypothetical leucine ri 99.6 1E-16 3.6E-21 141.4 2.9 128 18-150 48-260 (329)
127 2ast_B S-phase kinase-associat 99.6 1.7E-17 5.8E-22 146.3 -3.4 180 13-223 87-282 (336)
128 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 119.4 6.1 106 40-152 15-125 (149)
129 1ds9_A Outer arm dynein; leuci 99.6 6.4E-18 2.2E-22 138.4 -6.9 113 34-152 40-152 (198)
130 3g39_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 117.6 10.9 104 43-152 10-114 (170)
131 2r9u_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 117.0 10.8 103 44-152 14-117 (174)
132 1dce_A Protein (RAB geranylger 99.6 2.7E-15 9.2E-20 141.8 8.3 117 2-120 446-567 (567)
133 1z7x_W Ribonuclease inhibitor; 99.5 5.4E-17 1.9E-21 148.9 -7.3 209 15-225 166-410 (461)
134 1z7x_W Ribonuclease inhibitor; 99.5 5E-17 1.7E-21 149.2 -7.8 112 15-126 52-183 (461)
135 2ifg_A High affinity nerve gro 99.5 3.8E-14 1.3E-18 125.6 10.5 106 22-130 11-120 (347)
136 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 128.3 -4.7 133 14-149 43-183 (198)
137 3sb4_A Hypothetical leucine ri 99.4 3.6E-13 1.2E-17 118.6 11.2 81 63-149 225-306 (329)
138 2ifg_A High affinity nerve gro 99.4 4.9E-13 1.7E-17 118.4 8.2 103 45-152 11-115 (347)
139 4fdw_A Leucine rich hypothetic 99.4 4.3E-13 1.5E-17 121.5 5.1 195 20-233 158-363 (401)
140 4fdw_A Leucine rich hypothetic 99.2 6.8E-12 2.3E-16 113.6 5.3 209 13-242 130-349 (401)
141 3un9_A NLR family member X1; l 99.2 3.2E-13 1.1E-17 121.2 -3.8 132 20-151 73-222 (372)
142 3un9_A NLR family member X1; l 99.1 6.1E-12 2.1E-16 112.8 -1.5 136 18-153 100-252 (372)
143 3ogk_B Coronatine-insensitive 99.1 1.1E-11 3.8E-16 117.0 0.2 199 17-225 162-390 (592)
144 3ogk_B Coronatine-insensitive 99.1 7.1E-12 2.4E-16 118.3 -2.5 205 16-225 189-419 (592)
145 2p1m_B Transport inhibitor res 99.0 3.5E-12 1.2E-16 120.4 -8.2 199 17-223 103-324 (594)
146 2p1m_B Transport inhibitor res 98.9 1.1E-10 3.7E-15 110.2 -1.2 134 16-150 63-221 (594)
147 3rw6_A Nuclear RNA export fact 98.7 1.2E-08 4.1E-13 86.9 4.6 102 47-149 148-260 (267)
148 1io0_A Tropomodulin; LRR prote 98.6 3.6E-09 1.2E-13 85.3 -0.8 121 34-156 28-167 (185)
149 1io0_A Tropomodulin; LRR prote 98.5 1.2E-08 4.2E-13 82.2 0.9 112 15-126 32-164 (185)
150 2ra8_A Uncharacterized protein 98.5 3.4E-08 1.2E-12 88.0 3.1 37 39-76 169-205 (362)
151 4h09_A Hypothetical leucine ri 98.5 4.1E-07 1.4E-11 81.1 9.7 129 13-149 211-342 (379)
152 4h09_A Hypothetical leucine ri 98.5 7.1E-07 2.4E-11 79.5 11.2 112 15-131 236-350 (379)
153 3rw6_A Nuclear RNA export fact 98.5 7.2E-08 2.5E-12 82.1 4.1 103 15-119 137-257 (267)
154 4gt6_A Cell surface protein; l 98.4 1.9E-06 6.5E-11 77.3 11.0 109 36-152 259-369 (394)
155 4gt6_A Cell surface protein; l 98.3 1.2E-06 4.1E-11 78.6 8.9 127 12-149 258-387 (394)
156 4fs7_A Uncharacterized protein 98.3 2E-06 6.8E-11 77.2 10.0 127 15-149 249-375 (394)
157 4fs7_A Uncharacterized protein 98.3 1.6E-06 5.6E-11 77.7 9.4 122 12-145 269-393 (394)
158 2ra8_A Uncharacterized protein 98.3 9.5E-08 3.3E-12 85.1 -0.0 135 16-152 169-319 (362)
159 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.4E-11 67.6 1.6 92 34-126 53-153 (176)
160 3e4g_A ATP synthase subunit S, 97.8 8.3E-06 2.8E-10 64.8 3.3 88 15-102 57-154 (176)
161 3rfe_A Platelet glycoprotein I 97.8 3.7E-05 1.2E-09 58.0 6.1 55 68-126 12-68 (130)
162 3rfe_A Platelet glycoprotein I 97.6 7.1E-05 2.4E-09 56.4 5.7 54 46-101 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6.3E-09 58.1 2.1 117 37-153 36-170 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 5.7E-05 2E-09 61.1 -0.9 110 17-126 39-170 (197)
165 2lz0_A Uncharacterized protein 84.8 1.6 5.4E-05 30.6 5.0 44 76-121 8-51 (100)
166 2lz0_A Uncharacterized protein 82.3 2 6.7E-05 30.1 4.6 45 53-98 7-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.7e-28 Score=212.46 Aligned_cols=207 Identities=16% Similarity=0.142 Sum_probs=145.4
Q ss_pred CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc-cCCCc-------
Q 023443 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR-INPNI------- 83 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~-~~~~~------- 83 (282)
+.++.+++|++|+|++|.|+.+|..+..+++|++|+|++|.++.+| .+..+++|++|++++|++.+ +|..+
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 3455666677777777777666666666677777777777766665 56666677777776654433 43333
Q ss_pred -ccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 84 -GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 84 -~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
+.++++|++|++++|.++.+|. .++.+++|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~---------- 241 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTA---------- 241 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTT----------
T ss_pred hhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcc----------
Confidence 1236677777777777776665 56667777777777777776666 466677777777766542
Q ss_pred HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCC
Q 023443 163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS 241 (282)
Q Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~ 241 (282)
...+|..+. .+++|+.|++++|.+. .+|..+.++++|++|++++|.+ .|.+|.+++......
T Consensus 242 ----------~~~~p~~~~------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 242 ----------LRNYPPIFG------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANC 304 (328)
T ss_dssp ----------CCBCCCCTT------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTC
T ss_pred ----------hhhhHHHhc------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCce
Confidence 334566666 7889999999998877 8999999999999999999988 799999999887777
Q ss_pred CCCcccccCCC
Q 023443 242 GSKDVKENDEK 252 (282)
Q Consensus 242 ~~~~~~~~~~~ 252 (282)
.+....+....
T Consensus 305 ~l~l~~~~~~~ 315 (328)
T 4fcg_A 305 IILVPPHLQAQ 315 (328)
T ss_dssp EEECCGGGSCC
T ss_pred EEeCCHHHHHH
Confidence 66555444333
No 2
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.1e-26 Score=196.04 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=163.4
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
.+..+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .|..+++|++|++++|++++++
T Consensus 47 ~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125 (272)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred eeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC
Confidence 345555666777888889999999999888775 5677889999999999988876 4788899999999999999888
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccC
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFAS 160 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~ 160 (282)
+..+..+++|++|++++|.++++++ ..++.+++|+.|++++|+++.++.. .+..+++|++|++++|++
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l-------- 193 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQL-------- 193 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC--------
T ss_pred HHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcC--------
Confidence 8877788899999999999988887 4678888999999999999888774 457888999999988753
Q ss_pred hhHHHHHhhhccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443 161 EEMEEEAKKESMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 239 (282)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~ 239 (282)
..++. .+. .+++|+.|++++|.+. +.|++|+.+++..|.+ .|.||.+++....
T Consensus 194 -------------~~~~~~~~~------~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~-~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 -------------KSVPDGVFD------RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH-SGVVRNSAGSVAP 247 (272)
T ss_dssp -------------SCCCTTTTT------TCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT-GGGBBCTTSCBCG
T ss_pred -------------CccCHHHHh------CCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC-CCcccCcccccCC
Confidence 22233 334 7889999999999765 6688999999999999 7999999997765
Q ss_pred CCC
Q 023443 240 DSG 242 (282)
Q Consensus 240 ~~~ 242 (282)
...
T Consensus 248 ~~~ 250 (272)
T 3rfs_A 248 DSA 250 (272)
T ss_dssp GGS
T ss_pred CCC
Confidence 443
No 3
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.91 E-value=4.3e-24 Score=172.20 Aligned_cols=152 Identities=57% Similarity=0.896 Sum_probs=137.9
Q ss_pred CcccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC
Q 023443 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 1 ~~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
|||++.+.+...+++.++++|+.|++++|.|+.+|......++|++|++++|.|++++.|..+++|++|++++|.|+++|
T Consensus 1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence 89999999999999999999999999999999997654444599999999999999999999999999999999999999
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+.++..+++|++|++++|.|+.++.+..+..+++|+.|++++|+++.+|.++...+..+++|++||++++..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888789999999999999999988645788999999999999999999986555689999999999999544
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.1e-25 Score=199.24 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=176.0
Q ss_pred CCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
.++++.|+|++|.|+.+|..++.+++|++|+|++|.|+.+| .++.+++|++|++++|.++.+|+.+ ..+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECC
Confidence 47899999999999999988888999999999999999988 7899999999999999999887665 589999999999
Q ss_pred CCcCCC-CCCCCCCC---------CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443 97 NNRLVN-LVEIDPLT---------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE 166 (282)
Q Consensus 97 ~N~l~~-~~~~~~~~---------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~ 166 (282)
+|.+.+ +|. .+. ++++|++|++++|.++.+|. .++.+++|++|++++|.+
T Consensus 159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l-------------- 218 (328)
T 4fcg_A 159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPL-------------- 218 (328)
T ss_dssp EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCC--------------
T ss_pred CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCC--------------
Confidence 976554 544 544 49999999999999999998 689999999999999763
Q ss_pred HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCc
Q 023443 167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD 245 (282)
Q Consensus 167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~ 245 (282)
..+|..+. .+++|++|++++|.+. .+|..++.+++|++|++++|.+ .+.+|.+++.......++.
T Consensus 219 -------~~l~~~l~------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 219 -------SALGPAIH------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp -------CCCCGGGG------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEEC
T ss_pred -------CcCchhhc------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeC
Confidence 22344444 7889999999998887 7889999999999999999988 7999999998888888888
Q ss_pred ccccCCCCCCC
Q 023443 246 VKENDEKMVPD 256 (282)
Q Consensus 246 ~~~~~~~~~~~ 256 (282)
..++.-...++
T Consensus 285 ~~n~~~~~iP~ 295 (328)
T 4fcg_A 285 RGCVNLSRLPS 295 (328)
T ss_dssp TTCTTCCCCCG
T ss_pred CCCCchhhccH
Confidence 88665444443
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=5.3e-25 Score=190.60 Aligned_cols=198 Identities=18% Similarity=0.216 Sum_probs=118.6
Q ss_pred CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCc-CcccCCCcccCCccccEE
Q 023443 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 93 (282)
.++|++|++++|.|+.++ ..+..+++|++|++++|.++.+ + .|..+++|++|++++|. ++.+++..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 456777777777777666 4566677777777777777766 3 56677777777777775 676666666677777777
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE- 170 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~- 170 (282)
++++|.++++++ ..+..+++|++|++++|.++.++.. .+..+++|++|++++|++... ..|........+...
T Consensus 111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 777777777655 4666777777777777777766653 356677777777776543110 001110000000000
Q ss_pred ccc-cccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhh
Q 023443 171 SMK-TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 171 ~~~-~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l 225 (282)
+.. ...|..+. .+++|+.|++++|+++.+| ..+..+++|+.|++++|.+
T Consensus 187 n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 NRVAHVHPHAFR------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SCCCEECTTTTT------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CcccccCHhHcc------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 001 11233343 5566666666666666544 3466666666666666665
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.5e-25 Score=187.82 Aligned_cols=176 Identities=23% Similarity=0.304 Sum_probs=131.9
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++++.|++++|.|+.++ ..|..+++|++|++++|.|+.++ .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 56888888888888777 46777888888888888888776 3677888888888888888888777777888888888
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTL 175 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (282)
++|.++.+++ ..|..+++|++|++++|.++.++.. .+..+++|+.|++++|++ ..
T Consensus 117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l---------------------~~ 171 (270)
T 2o6q_A 117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQL---------------------KR 171 (270)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SC
T ss_pred CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcC---------------------cE
Confidence 8888888776 4677888888888888888877764 457778888888887652 12
Q ss_pred cCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhh
Q 023443 176 MPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVL 225 (282)
Q Consensus 176 ~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l 225 (282)
+|. .+. .+++|+.|++++|+++.+|.. +..+++|+.|++++|.+
T Consensus 172 ~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFD------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhc------cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 222 233 567777888888877766653 66777777777777776
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.4e-25 Score=190.19 Aligned_cols=188 Identities=18% Similarity=0.238 Sum_probs=164.1
Q ss_pred cCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 11 KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 11 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
.......+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++..+.++++|
T Consensus 33 ~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 33 DAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp SEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 33445677899999999999998875 66799999999999999999889999999999999999999999988899999
Q ss_pred cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh
Q 023443 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE 170 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~ 170 (282)
++|++++|.++++++ ..|+.+++|++|++++|.++.++.. .+..+++|++|++++|++
T Consensus 112 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l------------------ 169 (272)
T 3rfs_A 112 KELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQL------------------ 169 (272)
T ss_dssp CEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC------------------
T ss_pred CEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCc------------------
Confidence 999999999999987 5789999999999999999999875 468899999999999763
Q ss_pred ccccccCCC-CCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCC
Q 023443 171 SMKTLMPVE-VPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP 231 (282)
Q Consensus 171 ~~~~~~p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP 231 (282)
..++.. +. .+++|+.|++++|+++.+|+. +..+++|+.|++++|.+ .+.+|
T Consensus 170 ---~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~~ 222 (272)
T 3rfs_A 170 ---QSLPEGVFD------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-DCTCP 222 (272)
T ss_dssp ---CCCCTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-CCCTT
T ss_pred ---CccCHHHhc------CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-cccCc
Confidence 223333 33 788999999999999977654 79999999999999999 57666
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=3.1e-25 Score=193.91 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=140.0
Q ss_pred CceeEEEecCCccccccc-cccCCCCCcEEeccCCCcccc---C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
++|++|++++|.|+.+|. .+..+++|++|++++|.++.+ + .+..+++|++|++++|.++.+++.+ ..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE-ETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc-CCCCCCCEE
Confidence 567777777777777773 456777777777777777654 2 4445677777777777777766553 467777777
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---HHhccChhHHHHHhhh
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---ASLFASEEMEEEAKKE 170 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~~~~~~~~~~~~~~~~ 170 (282)
++++|.+++++....+..+++|++|++++|.+..++.. .+..+++|++|++++|.... ...|........+...
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 77777777665433566777777777777777655443 45667777777777755432 1112111111100000
Q ss_pred -ccccc-cCCCCCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCcc
Q 023443 171 -SMKTL-MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKIPD-YDSGSKDV 246 (282)
Q Consensus 171 -~~~~~-~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~-~~~~~~~~ 246 (282)
+.... .|..+. .+++|+.|++++|+++.++. .+..+++|++|++++|.+ .+.+|..+.... ....++..
T Consensus 184 ~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 184 QCQLEQLSPTAFN------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TSCCCEECTTTTT------TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-CBCSSSSCCCCCTTCCEEECT
T ss_pred CCCcCCcCHHHhc------CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC-cccCHHHHHhhhccCCEEEcc
Confidence 11222 244454 77889999999999987664 678889999999999998 566677766653 44555555
Q ss_pred ccc
Q 023443 247 KEN 249 (282)
Q Consensus 247 ~~~ 249 (282)
.+.
T Consensus 257 ~N~ 259 (306)
T 2z66_A 257 QND 259 (306)
T ss_dssp TCC
T ss_pred CCC
Confidence 444
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1e-24 Score=188.77 Aligned_cols=213 Identities=15% Similarity=0.095 Sum_probs=153.8
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (282)
++++.+++.++.+|..+ .++|++|++++|.|+.++ .|..+++|++|++++|.++++++..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68999999999999654 579999999999999986 68999999999999999999988888899999999999997
Q ss_pred -CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccc
Q 023443 100 -LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTL 175 (282)
Q Consensus 100 -l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 175 (282)
++.+++ ..+..+++|++|++++|.++.++.. .+..+++|++|++++|++... ..|........+... +....
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CccccCH-HHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 998866 5899999999999999999988664 578899999999999764211 112111111100000 12222
Q ss_pred cCCC-CCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCcccc
Q 023443 176 MPVE-VPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKE 248 (282)
Q Consensus 176 ~p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~ 248 (282)
+|.. +. .+++|+.|++++|+++.+ |..+..+++|+.|++++|.+ ..+|+. +........++...+
T Consensus 168 ~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFR------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTT------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhc------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC--CcCCHHHcccCcccCEEeccCC
Confidence 3332 33 566777777777777744 56677777777777777777 344432 444433344444333
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.3e-24 Score=196.80 Aligned_cols=187 Identities=26% Similarity=0.322 Sum_probs=106.4
Q ss_pred CCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
.|.++++|++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.+++..|..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 4555555555555555555444 44555555555555555555553 35555555555555555555555555555555
Q ss_pred cEEeccC-CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443 91 HTLVLTN-NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK 169 (282)
Q Consensus 91 ~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~ 169 (282)
++|++++ |.+..++. ..|.++++|++|++++|.++.+|. +..+++|+.|++++|.+
T Consensus 163 ~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l----------------- 219 (440)
T 3zyj_A 163 RRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHL----------------- 219 (440)
T ss_dssp CEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCC-----------------
T ss_pred CEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCcc-----------------
Confidence 5555555 33444443 345555555555555555555554 34555555555555432
Q ss_pred hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
....|..+. .+++|+.|+|++|+++.+ +.++..+++|++|++++|.+ ..+|...
T Consensus 220 ---~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~ 274 (440)
T 3zyj_A 220 ---SAIRPGSFQ------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL--TLLPHDL 274 (440)
T ss_dssp ---CEECTTTTT------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC--CCCCTTT
T ss_pred ---CccChhhhc------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC--CccChhH
Confidence 112244444 677788888888887754 34577778888888888877 4555544
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-24 Score=187.64 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=108.7
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
++++.|++++|.|+.++ ..+..+++|++|+|++|.|+.++....+++|++|++++|+++.+|..+ ..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-ccCCCCCEEECCC
Confidence 45666666666666554 556666666666666666666654466666666666666666665433 4666666666666
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP 177 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 177 (282)
|+|+.+++ ..|.++++|++|++++|+++.+|.. .|..+++|+.|++++|++ ..+|
T Consensus 110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~l~ 164 (290)
T 1p9a_G 110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNL---------------------TELP 164 (290)
T ss_dssp SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCC---------------------SCCC
T ss_pred CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcC---------------------CccC
Confidence 66666665 3566666666666666666666654 345666666666666542 2233
Q ss_pred CCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 178 VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 178 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..+. ..+++|+.|+|++|+|+.+|..+..+.+|+.|++.+|.+
T Consensus 165 ~~~~-----~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 AGLL-----NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTT-----TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHHh-----cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 3322 245666666666666666666666666666555555544
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-24 Score=187.59 Aligned_cols=194 Identities=18% Similarity=0.205 Sum_probs=167.7
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
.+.++++++.+++++|.|+.+|..+. ++++.|+|++|.|+.++ .|..+++|++|++++|.|+.+++. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 46788999999999999999997664 79999999999999874 789999999999999999999775 5899999
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES 171 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~ 171 (282)
+|++++|.|+.+|. .+..+++|++|++++|+++.++.. .|..+++|++|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~--~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l------------------- 136 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL------------------- 136 (290)
T ss_dssp EEECCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC-------------------
T ss_pred EEECCCCcCCcCch--hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCC-------------------
Confidence 99999999999987 889999999999999999999875 578999999999999763
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK 244 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~ 244 (282)
..+|..+. ..+++|+.|+|++|+|+.+|.. +..+++|+.|++++|.+ ..||..++.......++
T Consensus 137 --~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 137 --KTLPPGLL-----TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp --CCCCTTTT-----TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEE
T ss_pred --CccChhhc-----ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEE
Confidence 23343332 2788999999999999998875 57899999999999999 79999988765444333
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=5.8e-26 Score=199.67 Aligned_cols=126 Identities=20% Similarity=0.301 Sum_probs=61.7
Q ss_pred ceeEEEecCCccc---cccccccCCCCCcEEeccC-CCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 20 KERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 20 ~L~~L~Ls~N~l~---~ip~~~~~l~~L~~L~Ls~-N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
+++.|+|++|.++ .+|..+..+++|++|++++ |.+.+ +| .|+.+++|++|++++|.+++..+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555554 3445555555555555552 44442 33 44555555555555555554333333455555555
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCC-CCcEecCccc
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLK-SLRVLDFKKE 150 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~-~L~~L~ls~~ 150 (282)
++++|.+++..+ ..+..+++|++|++++|+++ .+|. .++.++ +|++|++++|
T Consensus 131 ~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 131 DFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSS
T ss_pred eCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCC
Confidence 555555553222 24455555555555555554 3444 344444 5555555553
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.6e-24 Score=197.21 Aligned_cols=204 Identities=23% Similarity=0.243 Sum_probs=119.8
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
+++++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++ .|.++++|++|+|++|.++.+++..|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666677777666553 55666666777777776666653 5666666677777666666666666666666667777
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-ccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE-SMK 173 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~-~~~ 173 (282)
++|.|+.+++ ..|..+++|+.|++++ |.+..++.. .+..+++|++|++++|.+.....+......+.+... +..
T Consensus 155 ~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred CCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 6666666665 3566666666666665 445555543 345566666666666443211111110000000000 111
Q ss_pred -cccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 174 -TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 174 -~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
...|..+. .+++|+.|++++|+++.+ |..+..+++|++|++++|.+ ..+|...
T Consensus 231 ~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~ 285 (452)
T 3zyi_A 231 PEIRPGSFH------GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSLPHDL 285 (452)
T ss_dssp SEECGGGGT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCTTS
T ss_pred cccCccccc------CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC--CccChHH
Confidence 11233344 677788888888887754 45677778888888888877 4555544
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=9.6e-25 Score=213.53 Aligned_cols=230 Identities=19% Similarity=0.196 Sum_probs=165.2
Q ss_pred CCCCCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..|..+.+++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 445777788888888888887 667777888888888888888874 45 677888888888888888876676677888
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHH---HHHhccChhH-
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERME---AASLFASEEM- 163 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~---~~~~~~~~~~- 163 (282)
+|++|++++|++++..+ ..++.+++|++|++++|+++ .+|. .++.+++|++|++++|... +..+|.....
T Consensus 491 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp TCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred CCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 89999999998885544 37888899999999999988 5666 6888999999999886542 1122211000
Q ss_pred ------------------------------------HHH-----------------------------Hhhh-----ccc
Q 023443 164 ------------------------------------EEE-----------------------------AKKE-----SMK 173 (282)
Q Consensus 164 ------------------------------------~~~-----------------------------~~~~-----~~~ 173 (282)
... +..+ ...
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 000 0000 001
Q ss_pred cccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCC
Q 023443 174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEK 252 (282)
Q Consensus 174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~ 252 (282)
..+|.++ +.++.|+.|+|++|+++ .||..|+++++|+.|++++|++ +|.||..+........++...++...
T Consensus 646 g~ip~~l------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 646 GYIPKEI------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SCCCGGG------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred ccCCHHH------hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCCEEECcCCcccc
Confidence 1233333 37778888888888887 7888888888888888888888 67888888877777778887777543
Q ss_pred C
Q 023443 253 M 253 (282)
Q Consensus 253 ~ 253 (282)
.
T Consensus 719 ~ 719 (768)
T 3rgz_A 719 P 719 (768)
T ss_dssp E
T ss_pred c
Confidence 3
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.8e-24 Score=185.18 Aligned_cols=201 Identities=19% Similarity=0.212 Sum_probs=156.3
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|++|++++|.|+.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999888 48889999999999999999886 6899999999999999999999888889999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHh-hh
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAK-KE 170 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~-~~ 170 (282)
++|.++.+++ ..++.+++|++|++++|.++. +|. .+..+++|++|++++|++... ..|........+. .+
T Consensus 108 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 9999999887 478999999999999999987 566 688999999999999754221 1111111000000 01
Q ss_pred ----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCC
Q 023443 171 ----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP 231 (282)
Q Consensus 171 ----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP 231 (282)
+....++.... ...+|+.|++++|+++.+|.. +.++++|+.|++++|.+ .+..|
T Consensus 183 ~ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~ 241 (276)
T 2z62_A 183 DLSLNPMNFIQPGAF------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW-DCSCP 241 (276)
T ss_dssp ECCSSCCCEECTTSS------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB-CCCTT
T ss_pred ecCCCcccccCcccc------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc-cccCC
Confidence 22233444433 344788888888888877765 57888888888888888 45443
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.7e-25 Score=215.71 Aligned_cols=222 Identities=19% Similarity=0.186 Sum_probs=174.0
Q ss_pred cCHHHHh--cCCCCCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccc-cC-CCCCCCccCeEeccCCcCcc
Q 023443 4 LTADLIW--KSPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 4 l~~~~i~--~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~L~~N~l~~ 78 (282)
++.+.+. .|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 4444443 2556889999999999999999 788999999999999999999996 46 78999999999999999998
Q ss_pred cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC-ccCCchHH-----------------------
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLY----------------------- 134 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~----------------------- 134 (282)
..|..+..+++|++|++++|.+++..+ ..++.+++|++|++++|+++ .+|...+.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 777777799999999999999996554 48999999999999999987 66653210
Q ss_pred -------------------------------------------HHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhh
Q 023443 135 -------------------------------------------VIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKK 169 (282)
Q Consensus 135 -------------------------------------------~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~ 169 (282)
.+..+++|++||+++|++... ..+........+..
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 123356788999999764321 11222111111110
Q ss_pred h-c-cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443 170 E-S-MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD 233 (282)
Q Consensus 170 ~-~-~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~ 233 (282)
. + ....+|..+. .+++|+.|+|++|+++ .||..++++++|++|++++|++ +|.||..
T Consensus 664 s~N~l~g~ip~~l~------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l-~g~iP~~ 723 (768)
T 3rgz_A 664 GHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL-SGPIPEM 723 (768)
T ss_dssp CSSCCCSCCCGGGG------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE-EEECCSS
T ss_pred cCCccCCCCChHHh------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc-cccCCCc
Confidence 0 2 2234666666 8999999999999999 8999999999999999999999 8999975
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.6e-25 Score=195.49 Aligned_cols=222 Identities=16% Similarity=0.191 Sum_probs=161.7
Q ss_pred CCCCCCCCceeEEEecC-Cccc-cccccccCCCCCcEEeccCCCcc-ccC-CCCCCCccCeEeccCCcCcccCCCcccCC
Q 023443 12 SPHFFNAIKERELDLRG-NKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFL 87 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~-N~l~-~ip~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 87 (282)
|..|.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+| .|..+++|++|++++|.+++..+..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 56788899999999995 8887 78888889999999999999998 456 68889999999999999997666666789
Q ss_pred ccccEEeccCCcCC-CCCCCCCCCCCC-CccEEEeeCCcCC-ccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChh
Q 023443 88 PKLHTLVLTNNRLV-NLVEIDPLTSLP-KLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEE 162 (282)
Q Consensus 88 ~~L~~L~L~~N~l~-~~~~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~ 162 (282)
++|++|++++|.++ .+|. .+..++ +|++|++++|+++ .+|. .+..++ |++|++++|++.. ...|....
T Consensus 149 ~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~~~~~~----~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPP----TFANLN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp TTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCG----GGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred CCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeeeccCCh----HHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence 99999999999998 4554 788887 8999999999998 5565 567776 9999998865421 12222211
Q ss_pred HHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCC
Q 023443 163 MEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD 240 (282)
Q Consensus 163 ~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~ 240 (282)
..+.+... +.....+..+. .+++|++|+|++|+++ .+|.++..+++|++|++++|.+ +|.+|.. +.....
T Consensus 222 ~L~~L~L~~N~l~~~~~~~~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGKVG------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQG-GNLQRF 293 (313)
T ss_dssp CCSEEECCSSEECCBGGGCC------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCCS-TTGGGS
T ss_pred CCCEEECCCCceeeecCccc------ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc-cccCCCC-cccccc
Confidence 11111000 11121222233 5778888999998888 7888888888898899888888 6778875 443344
Q ss_pred CCCCcccc
Q 023443 241 SGSKDVKE 248 (282)
Q Consensus 241 ~~~~~~~~ 248 (282)
..++...+
T Consensus 294 ~~l~l~~N 301 (313)
T 1ogq_A 294 DVSAYANN 301 (313)
T ss_dssp CGGGTCSS
T ss_pred ChHHhcCC
Confidence 44444433
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.4e-22 Score=165.10 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=149.8
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (282)
+.++.+++.++.+|..+ .++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57888999999998655 468999999999999886 47889999999999999999998888889999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCC
Q 023443 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVE 179 (282)
Q Consensus 100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 179 (282)
++.+++ ..|..+++|++|++++|.++.++.. .+..+++|++|++++|++ ..+|..
T Consensus 88 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l---------------------~~~~~~ 142 (208)
T 2o6s_A 88 LQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQL---------------------KSVPDG 142 (208)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SCCCTT
T ss_pred CCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCcc---------------------ceeCHH
Confidence 999887 4688999999999999999988875 467899999999998763 223333
Q ss_pred -CCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443 180 -VPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 239 (282)
Q Consensus 180 -~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~ 239 (282)
+. .+++|+.|++++|.+ .+.+++|+.|++..|.+ .|.||.+++....
T Consensus 143 ~~~------~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~-~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFD------RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKH-SGVVRNSAGSVAP 190 (208)
T ss_dssp TTT------TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHC-TTTBBCTTSSBCT
T ss_pred Hhc------cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhC-CceeeccCccccC
Confidence 33 678999999999954 36788999999999999 7999999886544
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.1e-23 Score=181.23 Aligned_cols=196 Identities=19% Similarity=0.226 Sum_probs=165.8
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
...+.++++++.++.+|..+. ++++.|++++|.|+.++ .|..+++|++|++++|.++.+++.+|.++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357899999999999997653 68999999999999986 69999999999999999999999998899999999999
Q ss_pred CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM 176 (282)
Q Consensus 97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (282)
+|.++.+++ ..|..+++|++|++++|.++.++.. .|..+++|++|++++|++ ..+
T Consensus 94 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l---------------------~~~ 148 (270)
T 2o6q_A 94 DNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNEL---------------------QSL 148 (270)
T ss_dssp SSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------CCC
T ss_pred CCcCCcCCH-hHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcC---------------------Ccc
Confidence 999999987 5789999999999999999999875 568999999999999763 223
Q ss_pred CCC-CCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCccccc
Q 023443 177 PVE-VPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKEN 249 (282)
Q Consensus 177 p~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~~ 249 (282)
|.. +. .+++|+.|++++|+++.+|+ .+..+++|++|++++|.+ ..+|+. +........++...+.
T Consensus 149 ~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 149 PKGVFD------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHcc------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC--CcCCHHHhccccCCCEEEecCCC
Confidence 433 34 78899999999999998876 488999999999999999 567765 4444444444444443
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.9e-24 Score=189.74 Aligned_cols=126 Identities=20% Similarity=0.286 Sum_probs=75.8
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
+++++|++++|.|+.++ ..+..+++|++|++++|.++.+ | .|..+++|++|++++|.++.+|..++ ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 45666677777666665 3566666677777777766665 3 56666666777776666666655543 45666666
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccH
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
++|.++.+++ ..+.++++|+.|++++|.+.. +... .+..+++|++|+++++.
T Consensus 129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSC
T ss_pred CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCc
Confidence 6666665554 345556666666666666542 2221 34555566666555543
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=6.4e-25 Score=195.83 Aligned_cols=226 Identities=15% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCC-CcccCCccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP-NIGEFLPKL 90 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 90 (282)
|.++++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++ .|..+++|++|++++|+++.++. ..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 555666666666666666543 44555666666666666666554 25556666666666666666555 444556666
Q ss_pred cEEeccCC-cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHH
Q 023443 91 HTLVLTNN-RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEA 167 (282)
Q Consensus 91 ~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~ 167 (282)
++|++++| .++.+++ ..|.++++|+.|++++|.++.++.. .+..+++|++|++++|+... ..++... ..+
T Consensus 152 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L 224 (353)
T 2z80_A 152 QILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVT---SSV 224 (353)
T ss_dssp CEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHT---TTE
T ss_pred cEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhc---ccc
Confidence 66666665 3555544 3556666666666666666654322 45566666666666644211 1111000 000
Q ss_pred hhh----ccccccC-CCCCCCc--chhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC-CCCCC
Q 023443 168 KKE----SMKTLMP-VEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL-KIPDY 239 (282)
Q Consensus 168 ~~~----~~~~~~p-~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l-~~~~~ 239 (282)
..+ +.....+ ..+.... ..-....++.+.++++.+..+|.++..+++|++|++++|.+ ..||.++ .....
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~ 302 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTS 302 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC--CCCCTTTTTTCTT
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC--CccCHHHHhcCCC
Confidence 011 1111111 1110000 00012246667788888899999999999999999999999 6899886 45555
Q ss_pred CCCCCccccc
Q 023443 240 DSGSKDVKEN 249 (282)
Q Consensus 240 ~~~~~~~~~~ 249 (282)
...++...+.
T Consensus 303 L~~L~L~~N~ 312 (353)
T 2z80_A 303 LQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 5556555554
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.9e-25 Score=209.32 Aligned_cols=114 Identities=24% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
|.++++|++|+|++|.|+.++ ..|..+++|++|+|++|.|++++ .|+++++|++|+|++|.++.+|+.+|.++++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 345566666666666666555 35666666666666666666654 356666666666666666666666655666666
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip 129 (282)
+|++++|.++++++ ..|+.+++|++|++++|.++.++
T Consensus 151 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 151 TLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp EEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC
T ss_pred EEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC
Confidence 66666666666655 35666666666666666665543
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.1e-23 Score=193.89 Aligned_cols=221 Identities=17% Similarity=0.129 Sum_probs=173.2
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
..+.++.+++.++.+|..+. +++++|+|++|.|+.++ .|.++++|++|+|++|.|+++++..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45789999999999997653 79999999999999984 799999999999999999999999899999999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHH---HHHhccChhHHHHHhhh-ccc
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERME---AASLFASEEMEEEAKKE-SMK 173 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~---~~~~~~~~~~~~~~~~~-~~~ 173 (282)
|.|+.+++ ..|..+++|++|+|++|+++.++.. .|..+++|+.|+++++... ....|......+.+... +..
T Consensus 133 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 133 NWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT---TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCh-hhhcccCCCCEEECCCCCcceeCHh---HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 99999987 5799999999999999999999886 5789999999999983211 11122222211111100 222
Q ss_pred cccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCC
Q 023443 174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEK 252 (282)
Q Consensus 174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~ 252 (282)
..+| .+ ..+++|+.|+|++|+++.+ |..|..+++|+.|++++|.+ .+..|..+........++...+....
T Consensus 209 ~~~~-~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 209 KDMP-NL------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp SSCC-CC------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccc-cc------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCcCCc
Confidence 2233 23 3788999999999999965 67899999999999999999 45556667666666777777666544
Q ss_pred CC
Q 023443 253 MV 254 (282)
Q Consensus 253 ~~ 254 (282)
.+
T Consensus 281 ~~ 282 (452)
T 3zyi_A 281 LP 282 (452)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.9e-25 Score=201.78 Aligned_cols=113 Identities=24% Similarity=0.266 Sum_probs=62.2
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
|.++++|++|++++|.|+.++ ..+..+++|++|++++|.++.++ .|+.+++|++|++++|.++.+|+.+|.++++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 344555555555555555544 35555555555555555555553 345555555555555555555555555555555
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCcc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~i 128 (282)
+|++++|.++.+++ ..+..+++|++|++++|.++.+
T Consensus 145 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 145 TLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred EEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence 55555555555544 3455555555555555555544
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.1e-24 Score=188.26 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=107.8
Q ss_pred HHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCC
Q 023443 8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL 87 (282)
Q Consensus 8 ~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 87 (282)
.+...+.+..+++|++|++++|.|+.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++ +..+
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l 128 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL 128 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTC
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCC
Confidence 33334445555555555555555555544 44555555555555555555555555555555555555555433 3355
Q ss_pred ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA 167 (282)
Q Consensus 88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~ 167 (282)
++|++|++++|.++++++ +..+++|+.|++++|.++.++. +..+++|+.|++++|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l--------------- 185 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKI--------------- 185 (308)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC---------------
T ss_pred CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCcc---------------
Confidence 555555555555555442 4445555555555555555443 34555555555555432
Q ss_pred hhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
..++. + ..+++|+.|++++|+++.++ .+..+++|+.|++++|.+ ..+|..+
T Consensus 186 ------~~~~~-l------~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i--~~~~~~~ 236 (308)
T 1h6u_A 186 ------SDISP-L------ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI--TNQPVFY 236 (308)
T ss_dssp ------CCCGG-G------GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE--ECCCEEC
T ss_pred ------CcChh-h------cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee--ecCCeee
Confidence 11111 2 36788999999999999777 488999999999999999 4455443
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.1e-23 Score=193.36 Aligned_cols=203 Identities=20% Similarity=0.217 Sum_probs=145.9
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++++.|+|++|+|+.++ ..|..+++|++|+|++|.|+.++ .|.++++|++|+|++|+++.+++..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45777777777777665 56677777777777777777664 5677777777777777777777766667777777777
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT 174 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
++|.|+.+++ ..|..+++|+.|++++ |.+..++.. .|..+++|++|++++|.+ .
T Consensus 144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l---------------------~ 198 (440)
T 3zyj_A 144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNL---------------------R 198 (440)
T ss_dssp CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCC---------------------S
T ss_pred CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcC---------------------c
Confidence 7777777766 4677777777777776 455566654 456777777777777542 2
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccCCCC
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKM 253 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~ 253 (282)
.+|. +. .+++|+.|+|++|+++.+ |..|..+++|+.|++++|.+ .+..|..+........++...++....
T Consensus 199 ~~~~-~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 199 EIPN-LT------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp SCCC-CT------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cccc-cC------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 2332 33 688999999999999966 67899999999999999999 444455666666666666666665443
Q ss_pred C
Q 023443 254 V 254 (282)
Q Consensus 254 ~ 254 (282)
+
T Consensus 271 ~ 271 (440)
T 3zyj_A 271 P 271 (440)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.4e-23 Score=185.61 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=74.4
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|++|++++|.|+.++ ..+..+++|++|++++|.|+.+ | .|..+++|++|++++|.++.+|+.++ ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 45666666666666554 4566666666666666666665 3 56666666666666666666665543 56666666
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKE 150 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~ 150 (282)
++|.++.+++ ..|.++++|+.|++++|.++. +... .+..+ +|++|++++|
T Consensus 131 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 131 HDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLNYLRISEA 182 (332)
T ss_dssp CSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCSCCBCCSS
T ss_pred CCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccCEEECcCC
Confidence 6666666655 346666666666666666642 2221 23333 5555555553
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.4e-24 Score=182.56 Aligned_cols=213 Identities=17% Similarity=0.148 Sum_probs=153.2
Q ss_pred EEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443 23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (282)
Q Consensus 23 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 100 (282)
.++.++..+..+|..+. ++|++|++++|.|+.++ .|..+++|++|++++|.++.+++..+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 56778888889997653 68999999999999986 789999999999999999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---HHhccChhHHHHHhhh-cccccc
Q 023443 101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---ASLFASEEMEEEAKKE-SMKTLM 176 (282)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 176 (282)
+++++ ..|.++++|++|++++|.++.++.. .+..+++|++|++++|.+.. ...|......+.+... +....+
T Consensus 89 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 89 QSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CEECT-TTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CccCh-hhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 99886 5899999999999999999988775 47899999999999976432 1112111111000000 111111
Q ss_pred C-CCCCCCcchhhcCCCe----eeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC-CCCCCCCCCCccccc
Q 023443 177 P-VEVPNVSEEEEQQTPK----VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL-KIPDYDSGSKDVKEN 249 (282)
Q Consensus 177 p-~~~~~~~~~~~l~~L~----~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l-~~~~~~~~~~~~~~~ 249 (282)
+ ..+ ..+.+++ .+++++|+++.+|.......+|++|++++|.+ ..+|+.+ ........++...+.
T Consensus 165 ~~~~~------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 165 YCTDL------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CGGGG------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCC--SCCCTTTTTTCCSCCEEECCSSC
T ss_pred CHHHh------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCce--eecCHhHhcccccccEEEccCCc
Confidence 1 111 2344444 67777777777766666666788888888888 5666654 334444444444443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8e-24 Score=201.49 Aligned_cols=215 Identities=19% Similarity=0.175 Sum_probs=156.5
Q ss_pred ccCHHHHhcC--CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCc
Q 023443 3 RLTADLIWKS--PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT 77 (282)
Q Consensus 3 ~l~~~~i~~~--~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~ 77 (282)
.|+.+.+... ..|.++++|++|+|++|.|+.+| ..|+.+++|++|+|++|.|+.+| .|+.+++|++|+|++|.++
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 3444444443 37889999999999999999877 56789999999999999999987 3789999999999999999
Q ss_pred ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCC-------------------------------------CCccEEEe
Q 023443 78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL-------------------------------------PKLQFLSL 120 (282)
Q Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-------------------------------------~~L~~L~L 120 (282)
++++..+.++++|++|++++|.+++++. ..+..+ ++|+.|++
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L 239 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 239 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEEC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEEC
Confidence 9999888899999999999999887653 222221 23555555
Q ss_pred eCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCC
Q 023443 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAP 197 (282)
Q Consensus 121 ~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~L 197 (282)
++|.++.++ .+..+++|+.|++++|.+... ..|........+... +....+|..+. .+++|+.|+|
T Consensus 240 ~~n~l~~~~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~------~l~~L~~L~L 308 (597)
T 3oja_B 240 QHNNLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTLKVLDL 308 (597)
T ss_dssp CSSCCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS------CCTTCCEEEC
T ss_pred CCCCCCCCh-----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc------cCCCCcEEEC
Confidence 555555442 367788888888888654221 122221111111100 22333444444 6789999999
Q ss_pred ChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCC
Q 023443 198 TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 231 (282)
Q Consensus 198 s~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP 231 (282)
++|.++.+|..+..+++|+.|++++|.+ ..+|
T Consensus 309 s~N~l~~i~~~~~~l~~L~~L~L~~N~l--~~~~ 340 (597)
T 3oja_B 309 SHNHLLHVERNQPQFDRLENLYLDHNSI--VTLK 340 (597)
T ss_dssp CSSCCCCCGGGHHHHTTCSEEECCSSCC--CCCC
T ss_pred CCCCCCccCcccccCCCCCEEECCCCCC--CCcC
Confidence 9999999999999999999999999999 5555
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-23 Score=177.28 Aligned_cols=155 Identities=22% Similarity=0.297 Sum_probs=115.1
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++++.|+|++|.|+.++ ..+..+++|++|+|++|.|+.++ .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56788888888888665 46777888888888888888764 4777888888888888888887777777888888888
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTL 175 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (282)
++|.|+.+++ ..|..+++|++|+|++|.++.++.. .+..+++|++|++++|++ ..
T Consensus 115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~ 169 (251)
T 3m19_A 115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQL---------------------QS 169 (251)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SC
T ss_pred CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcC---------------------Cc
Confidence 8888887776 4567788888888888888877764 467778888888887653 12
Q ss_pred cC-CCCCCCcchhhcCCCeeeCCChhHHHH
Q 023443 176 MP-VEVPNVSEEEEQQTPKVVAPTPEQIIA 204 (282)
Q Consensus 176 ~p-~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 204 (282)
+| ..+. .+++|+.+++++|.+++
T Consensus 170 ~~~~~~~------~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFD------RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTT------TCTTCCEEECCSCCBCT
T ss_pred cCHHHHh------CCCCCCEEEeeCCceeC
Confidence 22 2333 66778888888887753
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4e-24 Score=197.90 Aligned_cols=135 Identities=22% Similarity=0.267 Sum_probs=100.7
Q ss_pred CCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
..|.++++|++|+|++|.|+.+ |..|..+++|++|+|++|.++.+| .|.++++|++|+|++|.++.+++..+..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 4577777777777777777765 467777777888888777777775 4677777788888777777777776777777
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
|++|++++|.++.+++ ..|.++++|+.|++++|.++.++.. .+..+++|+.|+++++.
T Consensus 130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCC
T ss_pred CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCc
Confidence 8888888777777665 4777777888888888887777754 46777777777777744
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.3e-23 Score=187.04 Aligned_cols=230 Identities=18% Similarity=0.155 Sum_probs=162.6
Q ss_pred cCHHHHhcC--CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443 4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 4 l~~~~i~~~--~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~ 78 (282)
++.+.+... ..|..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+| .|..+++|++|++++|.+++
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 444444432 46889999999999999999876 66889999999999999999987 36899999999999999999
Q ss_pred cCCCcccCCccccEEeccCCcCCCCCCCCCCCCC-------------------------------------CCccEEEee
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL-------------------------------------PKLQFLSLL 121 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-------------------------------------~~L~~L~L~ 121 (282)
+++..+..+++|++|++++|.++.++. ..+..+ ++|+.|+++
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECC
T ss_pred cChhhccCCCCCCEEECCCCcCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECC
Confidence 988888899999999999999887642 222221 245555666
Q ss_pred CCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--HhccChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCC
Q 023443 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPT 198 (282)
Q Consensus 122 ~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls 198 (282)
+|.++.++ .+..+++|+.|++++|.+... ..|......+.+... +....+|..+. .+++|+.|+++
T Consensus 235 ~n~l~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~l~~L~~L~L~ 303 (390)
T 3o6n_A 235 HNNLTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTLKVLDLS 303 (390)
T ss_dssp SSCCCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS------CCTTCCEEECC
T ss_pred CCCCcccH-----HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC------CCCCCCEEECC
Confidence 66665543 367788888888888654221 122221111111000 22233444443 67899999999
Q ss_pred hhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443 199 PEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEN 249 (282)
Q Consensus 199 ~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~ 249 (282)
+|+++.+|..+..+++|++|++++|.+ ..+| +........++...+.
T Consensus 304 ~n~l~~~~~~~~~l~~L~~L~L~~N~i--~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 304 HNHLLHVERNQPQFDRLENLYLDHNSI--VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSSCC--CCCC--CCTTCCCSEEECCSSC
T ss_pred CCcceecCccccccCcCCEEECCCCcc--ceeC--chhhccCCEEEcCCCC
Confidence 999999999999999999999999999 5665 3344444445544443
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.2e-23 Score=177.59 Aligned_cols=181 Identities=19% Similarity=0.191 Sum_probs=157.4
Q ss_pred CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCC-ccccC--CCCCCCccCeEeccC-CcCcccCCCcccCCccccE
Q 023443 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKLE--NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHT 92 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 92 (282)
.++|++|++++|+|+.+| ..|..+++|++|++++|. ++.++ .|..+++|++|++++ |.++.+++..|.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 348999999999999998 488899999999999997 99986 688999999999998 9999999988889999999
Q ss_pred EeccCCcCCCCCCCCCCCCCCCcc---EEEeeCC-cCCccCCchHHHHhhCCCCc-EecCcccHHHHHHhccChhHHHHH
Q 023443 93 LVLTNNRLVNLVEIDPLTSLPKLQ---FLSLLDN-SITKKPNYRLYVIHKLKSLR-VLDFKKERMEAASLFASEEMEEEA 167 (282)
Q Consensus 93 L~L~~N~l~~~~~~~~~~~l~~L~---~L~L~~N-~l~~ip~~~~~~l~~l~~L~-~L~ls~~~~~~~~~~~~~~~~~~~ 167 (282)
|++++|.++++|. +..+++|+ +|++++| .++.++.. .|..+++|+ .|++++|++
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l--------------- 168 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGF--------------- 168 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCC---------------
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCC---------------
Confidence 9999999999874 77777777 9999999 99999886 578899999 999998763
Q ss_pred hhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HHHHH-HHhhcc-cChHHHHHHHHhhhCCCCCCC
Q 023443 168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-IIAIK-AAIVNS-QTLEEVARLEKVLKSGQLPAD 233 (282)
Q Consensus 168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip-~~l~~~-~~L~~L~l~~N~l~~g~iP~~ 233 (282)
..+|.... ...+|+.|++++|+ ++.+| ..+..+ ++|++|++++|.+ ..+|..
T Consensus 169 ------~~i~~~~~------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~ 223 (239)
T 2xwt_C 169 ------TSVQGYAF------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK 223 (239)
T ss_dssp ------CEECTTTT------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT
T ss_pred ------cccCHhhc------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh
Confidence 23454444 33689999999995 99886 457888 9999999999999 678876
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=5.9e-24 Score=203.86 Aligned_cols=240 Identities=11% Similarity=0.081 Sum_probs=171.0
Q ss_pred ccCHHHHhcCCC---CCCCCceeEEEecCCccc-cccccccCCCCCcEEeccCCCccccC-CCCCCCc-cCeEeccCCcC
Q 023443 3 RLTADLIWKSPH---FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNR-LGTLIINNNRI 76 (282)
Q Consensus 3 ~l~~~~i~~~~~---~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~-L~~L~L~~N~l 76 (282)
.++.+.+...+. +.++++|++|++++|.++ .+| .+..+++|++|++++|.++.+| .+..+++ |++|++++|.+
T Consensus 311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp ECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred ECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 344455555444 888999999999999999 888 8888899999999999999887 7888888 99999999999
Q ss_pred cccCCCcccCC--ccccEEeccCCcCCCCCCCCCCC-------CCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecC
Q 023443 77 TRINPNIGEFL--PKLHTLVLTNNRLVNLVEIDPLT-------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147 (282)
Q Consensus 77 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~-------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l 147 (282)
+.+|..+ ..+ ++|++|++++|.+++..+ ..+. .+++|++|++++|.++.+|.. .+..+++|++|++
T Consensus 390 ~~lp~~~-~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~~l~~L~~L~L 464 (636)
T 4eco_A 390 KYIPNIF-DAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE---LFSTGSPLSSINL 464 (636)
T ss_dssp SSCCSCC-CTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH---HHHTTCCCSEEEC
T ss_pred cccchhh-hhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH---HHccCCCCCEEEC
Confidence 9887644 344 389999999999988655 3666 777899999999999988884 4556889999999
Q ss_pred cccHHHH--HHhccChh----HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHH
Q 023443 148 KKERMEA--ASLFASEE----MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEE 217 (282)
Q Consensus 148 s~~~~~~--~~~~~~~~----~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~ 217 (282)
++|++.. ...|.... ....+..+ +....+|..+. ...+++|+.|+|++|+++.+|..+.++++|++
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 9876531 11111110 00011111 22223333221 01567888888888888888888888888888
Q ss_pred HHH------HHHhhhCCCCCCCCCCCCCCCCCCcccccCCCC
Q 023443 218 VAR------LEKVLKSGQLPADLKIPDYDSGSKDVKENDEKM 253 (282)
Q Consensus 218 L~l------~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~ 253 (282)
|++ ++|.+ .+.+|..++.......++...+..+..
T Consensus 541 L~Ls~N~~ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 541 FGIRNQRDAQGNRT-LREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp EECCSCBCTTCCBC-CCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred EECCCCcccccCcc-cccChHHHhcCCCCCEEECCCCcCCcc
Confidence 887 44556 577888887777777777777766443
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.8e-24 Score=188.77 Aligned_cols=202 Identities=13% Similarity=0.078 Sum_probs=131.1
Q ss_pred CCCceeEEEecCCccc-cccccc--cCCCCCcEEeccCCCccccC-CCCCC-----CccCeEeccCCcCcccCCCcccCC
Q 023443 17 NAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKLE-NMPHL-----NRLGTLIINNNRITRINPNIGEFL 87 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~-~ip~~~--~~l~~L~~L~Ls~N~l~~i~-~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l 87 (282)
++++|++|++++|.|+ .+|..+ ..+++|++|++++|.++++| .+..+ ++|++|++++|+++++++..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5677777777777777 566544 66777777777777777665 33444 777777777777777776666677
Q ss_pred ccccEEeccCCcCCCC---CCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHH
Q 023443 88 PKLHTLVLTNNRLVNL---VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEME 164 (282)
Q Consensus 88 ~~L~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~ 164 (282)
++|++|++++|++.+. +....+..+++|++|++++|.++.++......+..+++|++|++++|++.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----------- 241 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR----------- 241 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC-----------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC-----------
Confidence 7777777777776542 22012366777777777777777544322224456677777777776531
Q ss_pred HHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCC
Q 023443 165 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK 244 (282)
Q Consensus 165 ~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~ 244 (282)
...|.... ..+++|++|+|++|+|+.+|..+. ++|++|++++|.+ ..+|. +........++
T Consensus 242 ---------~~~~~~~~-----~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l--~~~p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 242 ---------DAAGAPSC-----DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL--DRNPS-PDELPQVGNLS 302 (312)
T ss_dssp ---------SSCCCSCC-----CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC--CSCCC-TTTSCEEEEEE
T ss_pred ---------cccchhhh-----hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC--CCChh-HhhCCCCCEEe
Confidence 11121111 246788888888888888887776 7888888888888 55565 55444444444
Q ss_pred cccc
Q 023443 245 DVKE 248 (282)
Q Consensus 245 ~~~~ 248 (282)
...+
T Consensus 303 L~~N 306 (312)
T 1wwl_A 303 LKGN 306 (312)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 4333
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.7e-23 Score=181.98 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=156.6
Q ss_pred ccCHHHHhcCC--CCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc
Q 023443 3 RLTADLIWKSP--HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 3 ~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~ 78 (282)
.++.+.+...+ .|.++++|++|++++|.|+.+ |..+..+++|++|++++|.++.+| .+. ++|++|++++|.+++
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK 135 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccc
Confidence 34445555433 588999999999999999977 688999999999999999999887 443 789999999999998
Q ss_pred cCCCcccCCccccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH-
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA- 155 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~- 155 (282)
+++..+.++++|++|++++|.++. ..+ ..+.++++|++|++++|.++.+|.. + .++|++|++++|++...
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEECTTSCCCEEC
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCcc----c--cccCCEEECCCCcCCccC
Confidence 888777888899999999998864 333 3677888888888888888888773 2 27788888887653211
Q ss_pred -HhccChhHHHHHhhh-ccccccC-CCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443 156 -SLFASEEMEEEAKKE-SMKTLMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232 (282)
Q Consensus 156 -~~~~~~~~~~~~~~~-~~~~~~p-~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~ 232 (282)
..|......+.+... +....++ ..+. .+++|+.|++++|+++.+|.++..+++|++|++++|.+ ..+|.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i--~~~~~ 280 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLA------NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI--SAIGS 280 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGG------GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC--CCCCT
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhcc------CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC--CccCh
Confidence 112221111100000 1122222 2333 67888899999998888888888888999999998888 66665
Q ss_pred CCC
Q 023443 233 DLK 235 (282)
Q Consensus 233 ~l~ 235 (282)
..+
T Consensus 281 ~~f 283 (330)
T 1xku_A 281 NDF 283 (330)
T ss_dssp TSS
T ss_pred hhc
Confidence 544
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.3e-21 Score=166.48 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=155.9
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
...++++++++.++.+|..+. ++++.|+|++|.|+.++ .|..+++|++|+|++|.++++++..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999997664 69999999999999985 68999999999999999999999988899999999999
Q ss_pred CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM 176 (282)
Q Consensus 97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (282)
+|.++.+++ ..|..+++|++|++++|.|+.++.. .+..+++|++|++++|++ ..+
T Consensus 92 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l---------------------~~~ 146 (251)
T 3m19_A 92 NNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSG---VFDRLTKLKELRLNTNQL---------------------QSI 146 (251)
T ss_dssp TSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------CCC
T ss_pred CCcccccCh-hHhcccCCCCEEEcCCCcCCCcChh---HhccCCcccEEECcCCcC---------------------Ccc
Confidence 999999987 5889999999999999999999885 468899999999999763 223
Q ss_pred CC-CCCCCcchhhcCCCeeeCCChhHHHHHHH-HhhcccChHHHHHHHHhhhCCC
Q 023443 177 PV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQ 229 (282)
Q Consensus 177 p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~ 229 (282)
|. .+. .+++|+.|+|++|+++.+|+ .+..+++|+.|++++|.+ .+.
T Consensus 147 ~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~ 194 (251)
T 3m19_A 147 PAGAFD------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF-DCS 194 (251)
T ss_dssp CTTTTT------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-CTT
T ss_pred CHHHcC------cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce-eCC
Confidence 33 444 78899999999999998775 689999999999999999 444
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.3e-23 Score=183.61 Aligned_cols=217 Identities=14% Similarity=0.138 Sum_probs=163.8
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC--CCcccCCccccEEeccC
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 97 (282)
+.++.+++.++.+|..+ .++|++|++++|.++.+| .|..+++|++|++++|.++.+. +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 57899999999999755 369999999999999997 4799999999999999998763 23334789999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHHhhh-cccc
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEAKKE-SMKT 174 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 174 (282)
|.++.++. .+..+++|++|++++|.++.++... .+..+++|++|+++++.... ...|......+.+... +...
T Consensus 88 n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 88 NGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSEEEEEE--EEETCTTCCEEECTTSEEESSTTTT--TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CccccChh--hcCCCCCCCEEECCCCcccccccch--hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 99999887 7889999999999999999887511 47889999999999965421 1122222111111111 1222
Q ss_pred --ccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCC-CCCCCCCCCCCCcccccC
Q 023443 175 --LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA-DLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 175 --~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~-~l~~~~~~~~~~~~~~~~ 250 (282)
..|..+. .+++|+.|++++|+++.+ |..+..+++|++|++++|.+ ..+|. .+........++...+..
T Consensus 164 ~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 164 ENFLPDIFT------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp GGEECSCCT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEECTTSCC
T ss_pred cccchhHHh------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeECCCCCC
Confidence 2566665 788999999999999966 67889999999999999999 44554 555555556666666554
Q ss_pred CC
Q 023443 251 EK 252 (282)
Q Consensus 251 ~~ 252 (282)
..
T Consensus 236 ~~ 237 (306)
T 2z66_A 236 MT 237 (306)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=7.4e-23 Score=187.99 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=42.3
Q ss_pred CCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCcccc-C---CCCCCCccCeEeccCCcCcccCCC-cccCCc
Q 023443 15 FFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E---NMPHLNRLGTLIINNNRITRINPN-IGEFLP 88 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~---~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 88 (282)
|.++++|++|+|++|.++.+ |..+..+++|++|++++|.+++. + .|..+++|++|++++|.++++.+. ++.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 44445555555555554433 34444455555555555555431 1 144455555555555555554332 234455
Q ss_pred cccEEeccCCcCCCC
Q 023443 89 KLHTLVLTNNRLVNL 103 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~ 103 (282)
+|++|++++|.++++
T Consensus 155 ~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 155 RFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCCEEECTTCCBSCC
T ss_pred cccEEeCCCCccccc
Confidence 555555555555443
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8.2e-24 Score=196.82 Aligned_cols=212 Identities=18% Similarity=0.163 Sum_probs=135.6
Q ss_pred CCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
.+++|++|+|++|.|+.++ ..|..+++|++|+|++|.|++++.|..+++|++|+|++|.|+++++. ++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence 3457888888888888665 67778888888888888888765577788888888888888776532 56666666
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--Hhcc-ChhHHHHHhh-hc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA--SLFA-SEEMEEEAKK-ES 171 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~-~~~~~~~~~~-~~ 171 (282)
++|.|++++. . .+++|+.|++++|.++.+++. .++.+++|++|++++|.+... ..|. .......+.. .+
T Consensus 107 ~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 107 ANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 6666666554 1 245566666666666655433 345566666666666443210 0010 0000000000 01
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEN 249 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~ 249 (282)
....+|... .+++|+.|+|++|+|+.+|+.+..+++|+.|++++|.+ ..||..++.......++...+.
T Consensus 180 ~l~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 180 FIYDVKGQV-------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCEEECCC-------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCC
T ss_pred ccccccccc-------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC--cccchhhccCCCCCEEEcCCCC
Confidence 112222221 47789999999999998888899999999999999999 5688887766555555554443
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.1e-24 Score=187.40 Aligned_cols=206 Identities=14% Similarity=0.073 Sum_probs=142.7
Q ss_pred CCCCCceeEEEecCCccc-cccccc--cCCCCCcEEeccCCCcccc-C-----CCCCCCccCeEeccCCcCcccCCCccc
Q 023443 15 FFNAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKL-E-----NMPHLNRLGTLIINNNRITRINPNIGE 85 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~-~ip~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~l~~L~~L~L~~N~l~~~~~~~~~ 85 (282)
+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.. + .+..+++|++|++++|.++++++..+.
T Consensus 87 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 87 VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 334456888888888887 455555 7788888888888888763 1 345678888888888888888877777
Q ss_pred CCccccEEeccCCcCCC---CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 86 FLPKLHTLVLTNNRLVN---LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 86 ~l~~L~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
.+++|++|++++|++.+ ++....+..+++|++|++++|+++.++......+..+++|++|++++|++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---------- 236 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL---------- 236 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC----------
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC----------
Confidence 88888888888888764 33212346788888888888888766653332356778888888888763
Q ss_pred HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCC
Q 023443 163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSG 242 (282)
Q Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~ 242 (282)
....|..+.. ...+++|++|+|++|+|+.+|..+. ++|++|++++|.+ ..+|. +........
T Consensus 237 ----------~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l--~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 237 ----------RATVNPSAPR---CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL--NRAPQ-PDELPEVDN 298 (310)
T ss_dssp ----------CCCCCSCCSS---CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC--CSCCC-TTSCCCCSC
T ss_pred ----------CccchhhHHh---ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC--CCCch-hhhCCCccE
Confidence 1223444440 0113689999999999998888775 7899999999999 44443 333333344
Q ss_pred CCcccc
Q 023443 243 SKDVKE 248 (282)
Q Consensus 243 ~~~~~~ 248 (282)
++...+
T Consensus 299 L~L~~N 304 (310)
T 4glp_A 299 LTLDGN 304 (310)
T ss_dssp EECSST
T ss_pred EECcCC
Confidence 444433
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.3e-23 Score=198.72 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=142.4
Q ss_pred cCHHHHh-cCCCCCCCCceeEEEecCCccccccccccCCCC-CcEEeccCCCccccC-CCCCC--CccCeEeccCCcCcc
Q 023443 4 LTADLIW-KSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHL--NRLGTLIINNNRITR 78 (282)
Q Consensus 4 l~~~~i~-~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l--~~L~~L~L~~N~l~~ 78 (282)
++.+.+. ..+.|..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+| .+..+ ++|++|++++|.+++
T Consensus 337 L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 3344444 344666677777777777777777766777777 777777777777666 34433 366666666666666
Q ss_pred cCCCccc-------CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhC-------CCCcE
Q 023443 79 INPNIGE-------FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL-------KSLRV 144 (282)
Q Consensus 79 ~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l-------~~L~~ 144 (282)
..|..+. .+++|++|++++|.++.+|. ..+..+++|++|++++|+++.+|... +... ++|+.
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~~~---~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNS---LKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCSSS---SEETTEECTTGGGCCE
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCHHH---hccccccccccCCccE
Confidence 5444443 45566666666666666654 23445666666666666666666531 1211 26666
Q ss_pred ecCcccHHHH--HHhc-cChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCC------hhHHH-HHHHHhhccc
Q 023443 145 LDFKKERMEA--ASLF-ASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPT------PEQII-AIKAAIVNSQ 213 (282)
Q Consensus 145 L~ls~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls------~N~l~-~ip~~l~~~~ 213 (282)
|++++|++.. ..++ ........+.. .+....+|..+. .+++|+.|+|+ +|++. .+|.++.+++
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh------cCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 6666654321 0111 01100000000 022233566665 78999999994 56666 8999999999
Q ss_pred ChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443 214 TLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 214 ~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~ 250 (282)
+|++|++++|.+ +.||..+. .....++...+..
T Consensus 567 ~L~~L~Ls~N~l--~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 567 SLTQLQIGSNDI--RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp SCCEEECCSSCC--CBCCSCCC--TTCCEEECCSCTT
T ss_pred CCCEEECCCCcC--CccCHhHh--CcCCEEECcCCCC
Confidence 999999999999 99999877 3555666665543
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.5e-23 Score=199.26 Aligned_cols=203 Identities=15% Similarity=0.090 Sum_probs=137.6
Q ss_pred CCCCCCceeEEEecCCccccc---cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCC-CcccCCc
Q 023443 14 HFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLP 88 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 88 (282)
.+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+| .|..+++|++|++++|.+.++++ ..+..++
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 455667777777777777654 556666777777777777777765 66777777777777777777655 4556777
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE 166 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~ 166 (282)
+|++|++++|.+++..+ ..+.++++|++|++++|.++. +|. .+..+++|+.|++++|.+
T Consensus 425 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l-------------- 485 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQL-------------- 485 (606)
T ss_dssp TCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCC--------------
T ss_pred cCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcC--------------
Confidence 77777777777776554 367777777777777777764 454 466777777777777542
Q ss_pred HhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC-CCCCC
Q 023443 167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY-DSGSK 244 (282)
Q Consensus 167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~-~~~~~ 244 (282)
....|..+. .+++|+.|++++|+++.+ |..+..+++|++|++++|.+ ..+|..+....+ ...++
T Consensus 486 ------~~~~~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 486 ------EQISWGVFD------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp ------CEECTTTTT------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEESCGGGSCTTCCEEE
T ss_pred ------CccChhhhc------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCHhHhhhcccCcEEE
Confidence 122344444 677888888888888754 67778888888888888887 577777555433 34444
Q ss_pred ccccc
Q 023443 245 DVKEN 249 (282)
Q Consensus 245 ~~~~~ 249 (282)
...+.
T Consensus 552 l~~N~ 556 (606)
T 3vq2_A 552 LTNNS 556 (606)
T ss_dssp CCSCC
T ss_pred ccCCC
Confidence 44433
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.8e-22 Score=175.47 Aligned_cols=210 Identities=17% Similarity=0.119 Sum_probs=133.7
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC------------------CCCCCccCeEeccCCc
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHLNRLGTLIINNNR 75 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l~~L~~L~L~~N~ 75 (282)
.|..+++|++|++++|.++.+++ +..+++|++|++++|.|++++. ...+++|++|++++|+
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence 35566666666666666665444 5556666666666666554321 1124556667777777
Q ss_pred CcccCCCcccCCccccEEeccCCcCCCCCCCCCC-CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH
Q 023443 76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA 154 (282)
Q Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~ 154 (282)
++.+++..+..+++|++|++++|.++++++ ..+ ..+++|++|++++|.++.++.. ..+++|++|++++|++..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence 777666666677788888888888777654 234 3567777777777777777652 346777777777755421
Q ss_pred H-HhccChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHH--HHHHHhhcccChHHHHHHHHhhhCCCC
Q 023443 155 A-SLFASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEKVLKSGQL 230 (282)
Q Consensus 155 ~-~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~L~l~~N~l~~g~i 230 (282)
. ..|........+.. .+....+|..+. .+++|+.+++++|.++ .+|..+..+++|+.+++..+.--.|..
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCC------CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred chhhhcccCcccEEECcCCcccchhhHhh------cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 1 00111111100000 033344666666 7889999999999998 788999999999999999554436776
Q ss_pred CCCCCC
Q 023443 231 PADLKI 236 (282)
Q Consensus 231 P~~l~~ 236 (282)
|.....
T Consensus 280 ~~~~~~ 285 (317)
T 3o53_A 280 EEECTV 285 (317)
T ss_dssp SCCCSS
T ss_pred hhccCC
Confidence 655443
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=4.8e-23 Score=202.84 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=137.3
Q ss_pred cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCC-CcEEeccCCCccccC-CCCCCC--ccCeEeccCCcCccc
Q 023443 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHLN--RLGTLIINNNRITRI 79 (282)
Q Consensus 4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l~--~L~~L~L~~N~l~~~ 79 (282)
|+.+.+...+.|..+++|+.|+|++|.|+.+|..+..+++ |+.|+|++|.|+.+| .+..++ +|+.|++++|++.+.
T Consensus 580 Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 580 CVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 4444444444666677777777777777777766666666 777777777776665 333332 266666666666554
Q ss_pred CCCcc---c--CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHH----HhhCCCCcEecCccc
Q 023443 80 NPNIG---E--FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV----IHKLKSLRVLDFKKE 150 (282)
Q Consensus 80 ~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~----l~~l~~L~~L~ls~~ 150 (282)
++.+. . .+++|+.|++++|.++.+|. ..+..+++|+.|+|++|+++.+|...+.. +.++++|+.|++++|
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence 33221 0 23367777777777776665 23446777777777777777777642100 012237777777776
Q ss_pred HHHH--HHhc-cChhHHHHHhhh-ccccccCCCCCCCcchhhcCCCeeeCCCh------hHHH-HHHHHhhcccChHHHH
Q 023443 151 RMEA--ASLF-ASEEMEEEAKKE-SMKTLMPVEVPNVSEEEEQQTPKVVAPTP------EQII-AIKAAIVNSQTLEEVA 219 (282)
Q Consensus 151 ~~~~--~~~~-~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~------N~l~-~ip~~l~~~~~L~~L~ 219 (282)
++.. ..++ ........+... +....+|..+. .+++|+.|+|++ |++. .+|.++.++++|++|+
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCccchHHhhhccCCCcCEEEeCCCCCCccchhhh------cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 5421 0010 000000000000 12222455444 778888888866 5555 7788888888888888
Q ss_pred HHHHhhhCCCCCCCCCCCCCCCCCCccccc
Q 023443 220 RLEKVLKSGQLPADLKIPDYDSGSKDVKEN 249 (282)
Q Consensus 220 l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~ 249 (282)
+++|.+ +.||..++. ....++...+.
T Consensus 813 Ls~N~L--~~Ip~~l~~--~L~~LdLs~N~ 838 (876)
T 4ecn_A 813 IGSNDI--RKVDEKLTP--QLYILDIADNP 838 (876)
T ss_dssp CCSSCC--CBCCSCCCS--SSCEEECCSCT
T ss_pred CCCCCC--CccCHhhcC--CCCEEECCCCC
Confidence 888888 888888663 44445555544
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=8.6e-23 Score=182.02 Aligned_cols=178 Identities=21% Similarity=0.204 Sum_probs=142.0
Q ss_pred CceeEEEecCCccccccc-cccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|++|++++|.|+.+|. .+..+++|++|++++|.|+.++ .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 478888888888888774 7788888888888888888774 5888888888888888888888776778888888888
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT 174 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
++|.++.++....+..+++|++|++++| .+..++.. .+..+++|+.|++++|.. ..
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l--------------------~~ 188 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDL--------------------QS 188 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTC--------------------CE
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCc--------------------Cc
Confidence 8888888765236778888888888888 47777554 567788888888887653 12
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHh-hcccChHHHHHHHHhh
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVL 225 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l-~~~~~L~~L~l~~N~l 225 (282)
..|..+. .+++|+.|++++|+++.+|..+ ..+++|++|++++|.+
T Consensus 189 ~~~~~l~------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 189 YEPKSLK------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ECTTTTT------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred cCHHHHh------ccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 2455666 7889999999999999888765 5689999999999999
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=5e-23 Score=182.03 Aligned_cols=214 Identities=18% Similarity=0.211 Sum_probs=156.6
Q ss_pred cCHHHHhc--CCCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCccc
Q 023443 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI 79 (282)
Q Consensus 4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~ 79 (282)
++.+.+.. +..|.++++|++|++++|.|+.+ |..+..+++|++|++++|.++.+| .+. ++|++|++++|.++.+
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV 138 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCC
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCcc
Confidence 44444444 34689999999999999999977 578999999999999999999987 443 8999999999999999
Q ss_pred CCCcccCCccccEEeccCCcCCC--CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH--
Q 023443 80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA-- 155 (282)
Q Consensus 80 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~-- 155 (282)
++..+.++++|++|++++|.++. ..+ ..+..+ +|++|++++|.++.+|.. + .++|+.|++++|.+...
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH
Confidence 99888899999999999999964 443 367777 888888888888888873 2 26788888888654221
Q ss_pred HhccChhHHHHHhhh-ccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443 156 SLFASEEMEEEAKKE-SMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD 233 (282)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~ 233 (282)
..|........+... +....++. .+ ..+++|+.|++++|+++.+|..+..+++|++|++++|.+ ..+|..
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l--~~~~~~ 282 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI--TKVGVN 282 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC--CBCCTT
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC--CccChh
Confidence 111111111000000 11122222 23 367788888888888888888888888888888888888 566654
Q ss_pred CC
Q 023443 234 LK 235 (282)
Q Consensus 234 l~ 235 (282)
..
T Consensus 283 ~~ 284 (332)
T 2ft3_A 283 DF 284 (332)
T ss_dssp SS
T ss_pred Hc
Confidence 43
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.5e-24 Score=196.96 Aligned_cols=219 Identities=19% Similarity=0.197 Sum_probs=158.5
Q ss_pred cCHHHHhc--CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~ 78 (282)
|+.+.+.. +..|.++++|++|+|++|.|+.+| ..|..+++|++|+|++|.++.++ .|..+++|++|++++|.++.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred CCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce
Confidence 44444443 467899999999999999999998 56789999999999999999874 78999999999999999999
Q ss_pred cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH---H
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA---A 155 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~---~ 155 (282)
+++..|.++++|++|++++|.++.+++ ..+..+++|+.|++++|.+..++.. .+..+++|+.|+++++.... .
T Consensus 143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 143 ISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECT
T ss_pred eChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCc
Confidence 998888899999999999999999886 4788999999999999999988765 46777888888877643210 0
Q ss_pred Hh-----------------------ccChhHHHHHhhh-ccccccCC-CCCCCcchhhcCCCeeeCCChhHHHHH-HHHh
Q 023443 156 SL-----------------------FASEEMEEEAKKE-SMKTLMPV-EVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAI 209 (282)
Q Consensus 156 ~~-----------------------~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l 209 (282)
.. |........+... +....++. .+. .+++|+.|+|++|+++.+ |.++
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH------ELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT------TCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc------ccccCCEEECCCCccceECHHHh
Confidence 00 1100000000000 11111222 222 566777777777777744 5567
Q ss_pred hcccChHHHHHHHHhhhCCCCCCCC
Q 023443 210 VNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 210 ~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
..+++|+.|++++|.+ ..+|+..
T Consensus 293 ~~l~~L~~L~L~~N~l--~~~~~~~ 315 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQL--TTLEESV 315 (477)
T ss_dssp TTCTTCCEEECCSSCC--SCCCGGG
T ss_pred cCcccCCEEECCCCcC--ceeCHhH
Confidence 7777777777777777 5555543
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.2e-23 Score=181.82 Aligned_cols=194 Identities=19% Similarity=0.201 Sum_probs=163.7
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|.++.++ .+..+++|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence 4456789999999999999988 57789999999999999999977999999999999999999985 35689999999
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK 173 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
++++|.+++++ .+..+++|++|++++|.++.++. +..+++|++|++++|++.
T Consensus 113 ~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~-------------------- 164 (308)
T 1h6u_A 113 DLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVS-------------------- 164 (308)
T ss_dssp ECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC--------------------
T ss_pred ECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCC--------------------
Confidence 99999999986 48899999999999999999876 689999999999997631
Q ss_pred cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443 174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~ 250 (282)
.++. +. .+++|+.|++++|+++.+++ +..+++|++|++++|.+ ..+|+ +........++...+..
T Consensus 165 -~~~~-l~------~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 165 -DLTP-LA------NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI--SDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -CCGG-GT------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC--CBCGG-GTTCTTCCEEEEEEEEE
T ss_pred -CChh-hc------CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc--Ccccc-ccCCCCCCEEEccCCee
Confidence 1222 33 67899999999999998876 89999999999999999 56663 55555555555555543
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.6e-22 Score=163.84 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=119.4
Q ss_pred CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
.++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++ .|..+++|++|++++|.++.+++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 568999999999999888 56788999999999999999986 478999999999999999999998888999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
+++|.|+++++ ..|..+++|++|++++|.++.++.. .+..+++|++|++++|.
T Consensus 107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCC
Confidence 99999999987 5689999999999999999999885 47889999999999974
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=9.6e-23 Score=187.23 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=99.6
Q ss_pred cCHHHHhc--CCCCCCCCceeEEEecCCcccc-ccc--cccCCCCCcEEeccCCCcccc-CC--CCCCCccCeEeccCCc
Q 023443 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAV-IEN--LGATEDQFDTIDLSDNEIVKL-EN--MPHLNRLGTLIINNNR 75 (282)
Q Consensus 4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~-ip~--~~~~l~~L~~L~Ls~N~l~~i-~~--~~~l~~L~~L~L~~N~ 75 (282)
|+.+.+.. |..|.++++|++|++++|.++. ++. .+..+++|++|++++|.++.+ |. +..+++|++|++++|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 44444433 4467777888888888888774 333 366777888888888887776 42 6777777777777777
Q ss_pred CcccCCCcccCC--------------------------------------------------------------------
Q 023443 76 ITRINPNIGEFL-------------------------------------------------------------------- 87 (282)
Q Consensus 76 l~~~~~~~~~~l-------------------------------------------------------------------- 87 (282)
++++++..+..+
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 776654332221
Q ss_pred -----------------------------ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhh
Q 023443 88 -----------------------------PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138 (282)
Q Consensus 88 -----------------------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~ 138 (282)
++|++|++++|.+++.++ ..++.+++|++|++++|.++.++.. .+..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~ 321 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN---AFWG 321 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT---TTTT
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh---HhcC
Confidence 245555555555555555 4788889999999999999877654 5778
Q ss_pred CCCCcEecCcccHH
Q 023443 139 LKSLRVLDFKKERM 152 (282)
Q Consensus 139 l~~L~~L~ls~~~~ 152 (282)
+++|++|++++|++
T Consensus 322 l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 322 LTHLLKLNLSQNFL 335 (455)
T ss_dssp CTTCCEEECCSSCC
T ss_pred cccCCEEECCCCcc
Confidence 89999999998754
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.3e-23 Score=183.23 Aligned_cols=214 Identities=18% Similarity=0.153 Sum_probs=152.1
Q ss_pred CCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
..+++|++|++++|.|+.++ ..+..+++|++|+|++|.+++++.+..+++|++|++++|.++++++ .++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEE
Confidence 45678999999999999876 7889999999999999999987668899999999999999988763 26677777
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH---HhccChhHHHHHhhh-
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA---SLFASEEMEEEAKKE- 170 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~---~~~~~~~~~~~~~~~- 170 (282)
+++|.+++++. . .+++|+.|++++|+++.++.. .+..+++|++|++++|.+... .++......+.+...
T Consensus 106 l~~n~l~~~~~-~---~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 106 AANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCSSCCSEEEE-C---CCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCCCccCCcCc-c---ccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 77777776654 1 245677777777777766543 345667777777776543211 111111000000000
Q ss_pred ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443 171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~ 250 (282)
+....++... .+++|+.|++++|+++.+|+.+..+++|++|++++|.+ ..||..+........++...+..
T Consensus 179 N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 179 NFIYDVKGQV-------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp SCCCEEECCC-------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCCC
T ss_pred CcCccccccc-------ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc--cchhhHhhcCCCCCEEEccCCCc
Confidence 1122223222 37799999999999999988899999999999999999 67898887776666666655543
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.1e-22 Score=178.64 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=143.3
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
.++.+.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.+++
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~- 127 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP- 127 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-
Confidence 3455556666778888999999999999998887 77889999999999999988888889999999999999988866
Q ss_pred cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
+..+++|++|++++|.....++ .+..+++|++|++++|.+..++. +..+++|+.|+++++.......+....
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~ 199 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISPLASLT 199 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGGGGGCT
T ss_pred -hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcccccccccCCC
Confidence 5688899999999986555444 57888888888888888887765 678888888888886532211111111
Q ss_pred HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
.+.........+.+......+++|+.|++++|+++.++. +..+++|++|++++|.+
T Consensus 200 ------~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 200 ------SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp ------TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred ------ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence 010000000111111112355666666777666665555 66666666666666666
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.3e-22 Score=189.28 Aligned_cols=133 Identities=21% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 14 HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
.|.++++|++|++++|.|+.+ |..|..+++|++|++++|.++.+ | .|+.+++|++|++++|.++++++..+.++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 456666666666666666644 35566666666666666666654 3 45666666666666666666555455566666
Q ss_pred cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCc--EecCccc
Q 023443 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR--VLDFKKE 150 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~--~L~ls~~ 150 (282)
++|++++|.+++++. ..+..+++|++|++++|.++.++.. .++.+++|+ .|++++|
T Consensus 132 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 132 ESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTC
T ss_pred cEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCC
Confidence 666666666665432 1344466666666666666655443 455566665 5566553
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.7e-22 Score=199.05 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=132.7
Q ss_pred CCCCCceeEEEecCCccccccc--cccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcc-cc
Q 023443 15 FFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK-LH 91 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~ 91 (282)
+..+++|++|+|++|.|+.||. .+..+++|+.|+|++|.|+.+|.|+.+++|+.|+|++|+++.+|..+ ..+++ |+
T Consensus 544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L~ 622 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQVE 622 (876)
T ss_dssp TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTCC
T ss_pred ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccCC
Confidence 3445566666666666666665 56666666666666666666666666666666666666666555443 35555 66
Q ss_pred EEeccCCcCCCCCCCCCCCC-------------------------------CCCccEEEeeCCcCCccCCchHHHHhhCC
Q 023443 92 TLVLTNNRLVNLVEIDPLTS-------------------------------LPKLQFLSLLDNSITKKPNYRLYVIHKLK 140 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~-------------------------------l~~L~~L~L~~N~l~~ip~~~~~~l~~l~ 140 (282)
+|++++|.++.+|. .+.. +++|+.|++++|.++.+|.. .+..++
T Consensus 623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~---~~~~l~ 697 (876)
T 4ecn_A 623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE---LFATGS 697 (876)
T ss_dssp EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH---HHHTTC
T ss_pred EEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH---HHccCC
Confidence 66666666655543 3332 23566666666666666653 334667
Q ss_pred CCcEecCcccHHHH--HHhccChh----HHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhh
Q 023443 141 SLRVLDFKKERMEA--ASLFASEE----MEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIV 210 (282)
Q Consensus 141 ~L~~L~ls~~~~~~--~~~~~~~~----~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 210 (282)
+|+.|++++|++.. ...|.... ....+..+ +....+|..+. ...+++|+.|+|++|+|+.+|..+.
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~----~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR----ATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh----hccCCCcCEEEeCCCCCCccchhhh
Confidence 77777777755431 11111110 00011111 11222332221 0156778888888888877777778
Q ss_pred cccChHHHHHHH------HhhhCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 023443 211 NSQTLEEVARLE------KVLKSGQLPADLKIPDYDSGSKDVKENDEKMV 254 (282)
Q Consensus 211 ~~~~L~~L~l~~------N~l~~g~iP~~l~~~~~~~~~~~~~~~~~~~~ 254 (282)
.+++|+.|++++ |.+ .+.+|..++.......++...+..+..+
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l-~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRI-LRQWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBC-CCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred cCCCCCEEECCCCCCcccccc-cccChHHHhcCCCCCEEECCCCCCCccC
Confidence 888888887765 555 5777877777777777777777664433
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=7.5e-23 Score=194.55 Aligned_cols=225 Identities=16% Similarity=0.099 Sum_probs=141.7
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCc-ccCCCcccCCccc
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKL 90 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 90 (282)
.|.++++|++|++++|.++.+|..+..+++|++|++++|.++.+ | .+..+++|++|++++|.+. .+++..+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 37788889999999998888888888888888999988888876 3 6778888888888888877 4666666778888
Q ss_pred cEEeccCCcCCCCC--CCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHH---HhccChhHHH
Q 023443 91 HTLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAA---SLFASEEMEE 165 (282)
Q Consensus 91 ~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~---~~~~~~~~~~ 165 (282)
++|++++|.+++.. + ..+..+++|++|++++|.+..++.. .+..+++|+.|++++|+.... ..|.......
T Consensus 353 ~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CEEECCSSCCCEEEEST-TTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CEEECCCCccccccCcc-hhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 88888888887764 3 2677788888888888887766543 466777788888877553211 1121111111
Q ss_pred HHhhh-cccc-ccCCCCCCCcchhhcCCCeeeCCChhHHHH--HH--HHhhcccChHHHHHHHHhhhCCCCCCCCCCCCC
Q 023443 166 EAKKE-SMKT-LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA--IK--AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 239 (282)
Q Consensus 166 ~~~~~-~~~~-~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip--~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~ 239 (282)
.+... +... ..|..+. .+++|+.|++++|+++. +| ..+..+++|++|++++|.+ .+.+|..++....
T Consensus 429 ~L~l~~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFD------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKM 501 (606)
T ss_dssp EEECTTCCCBTTCTTTTT------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-CEECTTTTTTCTT
T ss_pred EEECCCCccCCcCHHHHh------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-CccChhhhccccC
Confidence 00000 1111 1222233 45566666666666553 11 3455556666666666655 3333445554444
Q ss_pred CCCCCccccc
Q 023443 240 DSGSKDVKEN 249 (282)
Q Consensus 240 ~~~~~~~~~~ 249 (282)
...++...+.
T Consensus 502 L~~L~Ls~N~ 511 (606)
T 3t6q_A 502 MNHVDLSHNR 511 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 4444444443
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5.7e-23 Score=173.43 Aligned_cols=182 Identities=14% Similarity=0.171 Sum_probs=147.7
Q ss_pred cCHHHHhcC--CCCCCCCceeEEEecCCc-ccccc-ccccCCCCCcEEeccC-CCccccC--CCCCCCccCeEeccCCcC
Q 023443 4 LTADLIWKS--PHFFNAIKERELDLRGNK-IAVIE-NLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRI 76 (282)
Q Consensus 4 l~~~~i~~~--~~~~~l~~L~~L~Ls~N~-l~~ip-~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~L~~N~l 76 (282)
++.+.+... ..|.++++|++|++++|. ++.++ ..|..+++|++|++++ |.|+.++ .|..+++|++|++++|.+
T Consensus 38 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp EESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred EeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 334444443 258899999999999997 99988 5788999999999999 9999986 688999999999999999
Q ss_pred cccCCCcccCCcccc---EEeccCC-cCCCCCCCCCCCCCCCcc-EEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 77 TRINPNIGEFLPKLH---TLVLTNN-RLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 77 ~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
+++|. +..+++|+ +|++++| .++.+++ ..|.++++|+ .|++++|.++.+|.. .+.. ++|+.|++++|+
T Consensus 118 ~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 118 KMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp CSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TTTT-CEEEEEECTTCT
T ss_pred ccccc--cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hcCC-CCCCEEEcCCCC
Confidence 99876 56888888 9999999 9999987 5799999999 999999999999985 3344 899999999974
Q ss_pred HHHHHhccChhHHHHHhhhccccccC-CCCCCCcchhhc-CCCeeeCCChhHHHHHHHHhhcccChHHHHH
Q 023443 152 MEAASLFASEEMEEEAKKESMKTLMP-VEVPNVSEEEEQ-QTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR 220 (282)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l 220 (282)
. ...+| ..+. .+ ++|+.|++++|+++.+|.. .+++|+.|++
T Consensus 191 ~--------------------l~~i~~~~~~------~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 191 Y--------------------LTVIDKDAFG------GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA 233 (239)
T ss_dssp T--------------------CCEECTTTTT------TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred C--------------------cccCCHHHhh------ccccCCcEEECCCCccccCChh--HhccCceeec
Confidence 1 12233 3344 67 8999999999999988865 3444444433
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=6e-23 Score=178.66 Aligned_cols=179 Identities=17% Similarity=0.256 Sum_probs=153.9
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
...+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|+
T Consensus 39 ~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 39 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115 (291)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCC
T ss_pred ccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence 3345567889999999999998875 67799999999999999998779999999999999999999764 56899999
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES 171 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~ 171 (282)
+|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 116 ~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l------------------- 168 (291)
T 1h6t_A 116 SLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI------------------- 168 (291)
T ss_dssp EEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCC-------------------
T ss_pred EEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCcc-------------------
Confidence 9999999999974 5788999999999999999984 478999999999999763
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCC
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 232 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~ 232 (282)
..++. +. .+++|+.|++++|+++.+|. +..+++|+.|++++|.+ ...|.
T Consensus 169 --~~~~~-l~------~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i--~~~~~ 217 (291)
T 1h6t_A 169 --SDIVP-LA------GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC--LNKPI 217 (291)
T ss_dssp --CCCGG-GT------TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE--ECCCE
T ss_pred --ccchh-hc------CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc--cCCcc
Confidence 11121 33 68899999999999998864 99999999999999999 44443
No 60
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=3.8e-24 Score=193.04 Aligned_cols=201 Identities=17% Similarity=0.120 Sum_probs=123.6
Q ss_pred CCCCCCceeEEEecCCccc----ccccc-------ccCCCCCcEEeccCCCccc-----cC-CCCCCCccCeEeccCCcC
Q 023443 14 HFFNAIKERELDLRGNKIA----VIENL-------GATEDQFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRI 76 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~----~ip~~-------~~~l~~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~L~~N~l 76 (282)
.+..+++|++|+|++|.+. .+|.. +..+++|++|+|++|.|+. ++ .+..+++|++|+|++|.+
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3667778888888886554 23332 2567888888888888776 33 566777888888888877
Q ss_pred cccCCCcc----cCC---------ccccEEeccCCcCCC--CCCC-CCCCCCCCccEEEeeCCcCC------ccCCchHH
Q 023443 77 TRINPNIG----EFL---------PKLHTLVLTNNRLVN--LVEI-DPLTSLPKLQFLSLLDNSIT------KKPNYRLY 134 (282)
Q Consensus 77 ~~~~~~~~----~~l---------~~L~~L~L~~N~l~~--~~~~-~~~~~l~~L~~L~L~~N~l~------~ip~~~~~ 134 (282)
+...+..+ ..+ ++|++|++++|+++. ++.+ ..+..+++|+.|++++|.++ -++.
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~---- 210 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE---- 210 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----
Confidence 65332222 122 677788888877762 2210 13445677777777777776 1222
Q ss_pred HHhhCCCCcEecCcccHHHHHH------hccChhHHHHHhhh-ccccc--------cCCCCCCCcchhhcCCCeeeCCCh
Q 023443 135 VIHKLKSLRVLDFKKERMEAAS------LFASEEMEEEAKKE-SMKTL--------MPVEVPNVSEEEEQQTPKVVAPTP 199 (282)
Q Consensus 135 ~l~~l~~L~~L~ls~~~~~~~~------~~~~~~~~~~~~~~-~~~~~--------~p~~~~~~~~~~~l~~L~~L~Ls~ 199 (282)
.+..+++|++|++++|.+.... .+..... +..+ -..+. ++..+. .+.+++|+.|+|++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~---L~~L~L~~n~i~~~~~~~l~~~l~----~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN---LRELGLNDCLLSARGAAAVVDAFS----KLENIGLQTLRLQY 283 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT---CCEEECTTCCCCHHHHHHHHHHHH----TCSSCCCCEEECCS
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC---cCEEECCCCCCchhhHHHHHHHHh----hccCCCeEEEECcC
Confidence 3566777777777776543211 1111000 0000 00000 011110 01367899999999
Q ss_pred hHHHH-----HHHHh-hcccChHHHHHHHHhh
Q 023443 200 EQIIA-----IKAAI-VNSQTLEEVARLEKVL 225 (282)
Q Consensus 200 N~l~~-----ip~~l-~~~~~L~~L~l~~N~l 225 (282)
|.++. +|..+ .++++|+.|++++|.+
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 99987 99988 7789999999999999
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.7e-21 Score=179.89 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=91.1
Q ss_pred HhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 9 i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
+...+.+..+++|++|++++|.|+.+| ++.+++|++|++++|.|++++ ++.+++|++|++++|++++++ +..++
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~ 127 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNP 127 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCT
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCC
Confidence 333334444455555555555554443 444445555555555554443 444455555555555554442 23445
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA 167 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~ 167 (282)
+|++|++++|.+++++ ++.+++|++|++++| .+..++ +..+++|++|++++|++.... +.... .+
T Consensus 128 ~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~l~-l~~l~---~L 193 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKITELD-VSQNK---LL 193 (457)
T ss_dssp TCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSCCCCCC-CTTCT---TC
T ss_pred cCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCccceec-cccCC---CC
Confidence 5555555555554431 334444444444444 222331 244555555555554322110 10000 00
Q ss_pred hhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 168 KKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 168 ~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..+ +....+ .+ ..+++|+.|++++|+++.+| ++.+++|+.|++++|.+
T Consensus 194 ~~L~l~~N~l~~~--~l------~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 194 NRLNCDTNNITKL--DL------NQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CEEECCSSCCSCC--CC------TTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred CEEECcCCcCCee--cc------ccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence 000 001111 12 26677888888888888776 77788888888888887
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=3.2e-22 Score=192.69 Aligned_cols=224 Identities=19% Similarity=0.129 Sum_probs=130.4
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
|.++++|++|++++|.++.++ ..+..+++|++|+|++|.++.+| .|+.+++|++|++++|.++++++..+.++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 556666666666666666543 55566666666666666666665 366666666666666666666665556666666
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChh-------
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEE------- 162 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~------- 162 (282)
+|++++|.+++.++ ..++++++|++|++++|.++.++...+ .+..+++|+.|++++|.... ...|....
T Consensus 125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 125 TLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp EEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred EEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 66666666666554 356666666666666666666554311 12234666666666643211 01111000
Q ss_pred ---------HHHHH-----hhh-------c-cccccCCCCCCCcchhhcC--CCeeeCCChhHHHHH-HHHhhcccChHH
Q 023443 163 ---------MEEEA-----KKE-------S-MKTLMPVEVPNVSEEEEQQ--TPKVVAPTPEQIIAI-KAAIVNSQTLEE 217 (282)
Q Consensus 163 ---------~~~~~-----~~~-------~-~~~~~p~~~~~~~~~~~l~--~L~~L~Ls~N~l~~i-p~~l~~~~~L~~ 217 (282)
..... ..+ + .....|..+. .+. +|+.|++++|+++.+ |.+++.+++|++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~------~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL------GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG------GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh------ccCcCCCCEEECCCCCcCccCcccccCcccccE
Confidence 00000 000 0 0011222222 343 488999999988855 466888899999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCccc
Q 023443 218 VARLEKVLKSGQLPADLKIPDYDSGSKDVK 247 (282)
Q Consensus 218 L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~ 247 (282)
|++++|.+ .+.+|..+........++...
T Consensus 277 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 277 FFLEYNNI-QHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EECCSCCB-SEECTTTTTTCTTCCEEECTT
T ss_pred eeCCCCcc-CccChhhhcCCCCccEEeccc
Confidence 99998888 566666776666555555543
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=7.2e-22 Score=182.49 Aligned_cols=140 Identities=21% Similarity=0.281 Sum_probs=104.7
Q ss_pred cCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCc
Q 023443 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI 83 (282)
Q Consensus 4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~ 83 (282)
+....+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++++++
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred cCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--
Confidence 334445555667788889999999998888877 77888889999988888887668888888888888888888865
Q ss_pred ccCCccccEEeccCCcCCCCCCC------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443 84 GEFLPKLHTLVLTNNRLVNLVEI------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL 145 (282)
Q Consensus 84 ~~~l~~L~~L~L~~N~l~~~~~~------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L 145 (282)
+..+++|++|++++|.++.++.+ ..+..+++|+.|++++|.++.++. +..+++|++|
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L 204 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-----LAKLTNLESL 204 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEE
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-----hccCCCCCEE
Confidence 56788888888888887776431 124556667777777777776643 5667777777
Q ss_pred cCcccH
Q 023443 146 DFKKER 151 (282)
Q Consensus 146 ~ls~~~ 151 (282)
+++++.
T Consensus 205 ~l~~n~ 210 (466)
T 1o6v_A 205 IATNNQ 210 (466)
T ss_dssp ECCSSC
T ss_pred EecCCc
Confidence 777654
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.5e-22 Score=190.92 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=164.7
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
+..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+.+++ .|..+++|++|++++|.+++.++..+.+++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 34567899999999999999999999999999999999999999873 688999999999999999998888888999
Q ss_pred cccEEeccCCcCCC-CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHH
Q 023443 89 KLHTLVLTNNRLVN-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEA 167 (282)
Q Consensus 89 ~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~ 167 (282)
+|++|++++|.+++ .++ ..++.+++|+.|++++|+++.+++. .+..+++|+.|++++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l--------------- 509 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQLLNMSHNNL--------------- 509 (606)
T ss_dssp TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCC---------------
T ss_pred CCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccChh---hhcccccCCEEECCCCcC---------------
Confidence 99999999999997 233 3899999999999999999987654 578999999999999863
Q ss_pred hhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhccc-ChHHHHHHHHhhhCCCCC
Q 023443 168 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQ-TLEEVARLEKVLKSGQLP 231 (282)
Q Consensus 168 ~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~-~L~~L~l~~N~l~~g~iP 231 (282)
....|..+. .+++|+.|++++|+++.+|..+..++ +|+.|++++|.+ .+..|
T Consensus 510 -----~~~~~~~~~------~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~-~c~c~ 562 (606)
T 3vq2_A 510 -----LFLDSSHYN------QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV-ACICE 562 (606)
T ss_dssp -----SCEEGGGTT------TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC-CCSST
T ss_pred -----CCcCHHHcc------CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc-ccCCc
Confidence 122355555 78899999999999999999999997 599999999999 45444
No 65
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=3.5e-20 Score=154.73 Aligned_cols=144 Identities=25% Similarity=0.347 Sum_probs=126.2
Q ss_pred cCHHHHhcCCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccC
Q 023443 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
++.+.+...+.-. .++|+.|++++|.|+.++ ..|..+++|++|+|++|.|+.+ | .|.++++|++|+|++|.|+.++
T Consensus 18 c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 18 CRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp CTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred cCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 3344444443311 268999999999999988 5888999999999999999998 4 7999999999999999999999
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+.+|.++++|++|+|++|.|+++++ ..|..+++|++|+|++|+|+.++.. .+..+++|++|++++|..
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCE
T ss_pred HhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCc
Confidence 9999899999999999999999987 5899999999999999999999875 578899999999999764
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-22 Score=178.23 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=152.5
Q ss_pred cCHHHHhc--CCCC--CCCCceeEEEecCCccccccccccCC-----CCCcEEeccCCCccccC--CCCCCCccCeEecc
Q 023443 4 LTADLIWK--SPHF--FNAIKERELDLRGNKIAVIENLGATE-----DQFDTIDLSDNEIVKLE--NMPHLNRLGTLIIN 72 (282)
Q Consensus 4 l~~~~i~~--~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~~l-----~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~ 72 (282)
++.+.+.. |..+ ..+++|++|++++|.|+.+|..+..+ ++|++|++++|+|++++ .|+.+++|++|+++
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 34444442 4444 78999999999999999888777766 99999999999999985 78999999999999
Q ss_pred CCcCccc---CCC-cccCCccccEEeccCCcCCCCCCC--CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEec
Q 023443 73 NNRITRI---NPN-IGEFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146 (282)
Q Consensus 73 ~N~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ 146 (282)
+|++.+. ++. .+..+++|++|++++|.|+.++.+ ..+..+++|++|++++|+++..++.. .+..+++|++|+
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~ 259 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLN 259 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEE
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEE
Confidence 9998663 322 236899999999999999965431 23457899999999999999755210 356689999999
Q ss_pred CcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 147 FKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 147 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
+++|++ ..+|..+. ++|++|+|++|+|+.+|. +..+++|++|++++|.+
T Consensus 260 Ls~N~l---------------------~~ip~~~~--------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 260 LSFTGL---------------------KQVPKGLP--------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTSCC---------------------SSCCSSCC--------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCCcc---------------------Chhhhhcc--------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 999863 23444432 589999999999998876 99999999999999998
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.6e-21 Score=173.06 Aligned_cols=229 Identities=16% Similarity=0.200 Sum_probs=135.8
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCC-ccccCCCCCCCccCeEeccCCcCcccCC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNNRITRINP 81 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~L~~N~l~~~~~ 81 (282)
.++.+.+...+.+.++++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|++++|.+..+++
T Consensus 94 ~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 94 YIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred EccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh
Confidence 4555566666678888888888888888887766 6667777777777774 3334455566666666666666655543
Q ss_pred CcccCCccccEEeccCCcCCCCCCC-------------------CCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCC
Q 023443 82 NIGEFLPKLHTLVLTNNRLVNLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142 (282)
Q Consensus 82 ~~~~~l~~L~~L~L~~N~l~~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L 142 (282)
+..+++|++|++++|.++.++++ ..+..+++|+.|++++|.++.++. +..+++|
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L 245 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-----LANLSQL 245 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred --hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-----hhcCCCC
Confidence 33555555555555555554320 014455666666666666666554 4566666
Q ss_pred cEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccChHHHHHH
Q 023443 143 RVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARL 221 (282)
Q Consensus 143 ~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~L~~L~l~ 221 (282)
++|++++|.+.....+.... .+.....-...+.+++....+++|+.|++++|+++ ..|..++.+++|++|+++
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 246 TWLEIGTNQISDINAVKDLT------KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCT------TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CEEECCCCccCCChhHhcCC------CcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 67776665432211111111 11001111112222223357788999999999888 556778889999999999
Q ss_pred HHhhhCCCCCCCCCCCCCCCCCCcccc
Q 023443 222 EKVLKSGQLPADLKIPDYDSGSKDVKE 248 (282)
Q Consensus 222 ~N~l~~g~iP~~l~~~~~~~~~~~~~~ 248 (282)
+|.+ ..+|+ +........++...+
T Consensus 320 ~n~l--~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QNHI--TDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SSSC--CCCGG-GGGCTTCSEESSSCC
T ss_pred CCcc--ccccC-hhhhhccceeehhhh
Confidence 9988 44444 444444444444433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.2e-21 Score=177.91 Aligned_cols=216 Identities=17% Similarity=0.117 Sum_probs=145.6
Q ss_pred ccCHHHHhcCC--CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC------------------CCC
Q 023443 3 RLTADLIWKSP--HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPH 62 (282)
Q Consensus 3 ~l~~~~i~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~ 62 (282)
.|+.+.+...+ .|..+++|++|+|++|.|+.+++ +..+++|++|+|++|.|++++. ...
T Consensus 40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~ 118 (487)
T 3oja_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (487)
T ss_dssp ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence 34445555433 57788888888888888876554 6677777777777777765431 123
Q ss_pred CCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCC-CCCCccEEEeeCCcCCccCCchHHHHhhCCC
Q 023443 63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141 (282)
Q Consensus 63 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~ 141 (282)
+++|++|++++|.++++++..+.++++|++|++++|.+++.++ ..+. .+++|+.|+|++|.|+.++. +..+++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-----~~~l~~ 192 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKG-----QVVFAK 192 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTT
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccccc-----cccCCC
Confidence 5677888888888888777666678888888888888887655 3554 67888888888888887765 345778
Q ss_pred CcEecCcccHHHHH-HhccChhHHHHHhh-hccccccCCCCCCCcchhhcCCCeeeCCChhHHH--HHHHHhhcccChHH
Q 023443 142 LRVLDFKKERMEAA-SLFASEEMEEEAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII--AIKAAIVNSQTLEE 217 (282)
Q Consensus 142 L~~L~ls~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~ 217 (282)
|++|++++|.+... ..|........+.. .+....+|..+. .+++|+.+++++|.+. .+|..+..++.|+.
T Consensus 193 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred CCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence 88888888654321 00111111100000 023344666666 7889999999999998 78899999999999
Q ss_pred HHHHHHhhhCCCCC
Q 023443 218 VARLEKVLKSGQLP 231 (282)
Q Consensus 218 L~l~~N~l~~g~iP 231 (282)
+++.......|.-|
T Consensus 267 l~~~~~~~~~~~~~ 280 (487)
T 3oja_A 267 VAKQTVKKLTGQNE 280 (487)
T ss_dssp HHHHHHHHHTSSSS
T ss_pred EeccccccccCCCc
Confidence 99974443234433
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=5.5e-20 Score=153.50 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=132.4
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (282)
+.++++++.++.||..+. ++++.|++++|.|+.++ .|..+++|++|+|++|+|+.+++..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 679999999999997654 79999999999999986 78999999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC-C
Q 023443 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP-V 178 (282)
Q Consensus 100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 178 (282)
|+.+++ ..|.++++|++|+|++|+|+.++.. .|..+++|++|++++|.+ ..++ .
T Consensus 92 l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l---------------------~~~~~~ 146 (220)
T 2v9t_B 92 ITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKL---------------------QTIAKG 146 (220)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---------------------SCCCTT
T ss_pred CCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcC---------------------CEECHH
Confidence 999998 5789999999999999999998765 678999999999999863 2233 3
Q ss_pred CCCCCcchhhcCCCeeeCCChhHHHH
Q 023443 179 EVPNVSEEEEQQTPKVVAPTPEQIIA 204 (282)
Q Consensus 179 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ 204 (282)
.+. .+++|+.++|++|.+.+
T Consensus 147 ~~~------~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFS------PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTT------TCTTCCEEECCSSCEEC
T ss_pred HHh------CCCCCCEEEeCCCCcCC
Confidence 344 68899999999998863
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.1e-19 Score=152.54 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=132.5
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
.-+.++.+++.++.+|..+. ++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|.++++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45689999999999997653 89999999999999984 689999999999999999999999888999999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccC
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMP 177 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 177 (282)
|.|+.+++ ..|..+++|++|++++|+|+.+|. .+..+++|++|++++|++ ..+|
T Consensus 98 N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l---------------------~~~~ 151 (229)
T 3e6j_A 98 NQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQL---------------------KSIP 151 (229)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCC---------------------CCCC
T ss_pred CcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcC---------------------CccC
Confidence 99999987 578899999999999999999998 679999999999999863 2233
Q ss_pred C-CCCCCcchhhcCCCeeeCCChhHHHH
Q 023443 178 V-EVPNVSEEEEQQTPKVVAPTPEQIIA 204 (282)
Q Consensus 178 ~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ 204 (282)
. .+. .+++|+.+++++|.+.+
T Consensus 152 ~~~~~------~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 152 HGAFD------RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTT------TCTTCCEEECTTSCBCT
T ss_pred HHHHh------CCCCCCEEEeeCCCccC
Confidence 3 333 78899999999998763
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3e-21 Score=180.29 Aligned_cols=61 Identities=7% Similarity=-0.062 Sum_probs=45.6
Q ss_pred hcCCCeeeCCChhHHH---HHHHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCccccc
Q 023443 188 EQQTPKVVAPTPEQII---AIKAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKEN 249 (282)
Q Consensus 188 ~l~~L~~L~Ls~N~l~---~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~~ 249 (282)
.+++|+.|++++|+++ .+|..+..+++|++|++++|.+ .+.+|.. +........++...+.
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGGCSCCCCTTCCEEECCSSC
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-CcccccchhccCccCCEEECcCCC
Confidence 7889999999999998 5667899999999999999999 4558865 3333344444444443
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=7.2e-21 Score=179.68 Aligned_cols=105 Identities=24% Similarity=0.232 Sum_probs=68.1
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|++|++++|.|+.++ ..|..+++|++|+|++|.|+++ | .|..+++|++|++++|.++.+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 56677777777776665 4666667777777777776665 3 466667777777777777666654 5666777777
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 126 (282)
++|.+++++....|+++++|++|++++|.++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 7776666541125666666666666666654
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.4e-21 Score=178.97 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
.+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++++++ +..+++|++|
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 34444445555555554444333 33455555555555555555555556666666666666665544 3456666666
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccc
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMK 173 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
++++|.++++++ +..+++|+.|++++|+++.++. +..+++|+.|++++|.+.....+... ..+...
T Consensus 271 ~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l------~~L~~L 336 (466)
T 1o6v_A 271 KLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISPVSSL------TKLQRL 336 (466)
T ss_dssp ECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGGGGGC------TTCCEE
T ss_pred ECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchhhccC------ccCCEe
Confidence 666666666543 5566666666666666666554 46667777777776543221111110 111000
Q ss_pred cccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCC
Q 023443 174 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 234 (282)
Q Consensus 174 ~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l 234 (282)
......+.+.+....+++|+.|++++|+++.+++ +..+++|+.|++++|.+ ..+|..+
T Consensus 337 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~--~~~p~~~ 394 (466)
T 1o6v_A 337 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW--TNAPVNY 394 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE--ECCCBCC
T ss_pred ECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc--cCCchhh
Confidence 0001111111222466777777777777775544 77777777777777777 3344443
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.8e-21 Score=172.15 Aligned_cols=132 Identities=22% Similarity=0.268 Sum_probs=89.6
Q ss_pred CceeEEEecCCcccccc-cccc-CCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 19 IKERELDLRGNKIAVIE-NLGA-TEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~-~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
..++.|+|++|+|+.++ ..+. .+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|.++++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 34677777777777666 3444 6777777777777777764 467777777777777777777776666777777777
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
|++|.|+.+++ ..|.++++|+.|+|++|+|+.+|...|..+..+++|+.|++++|+
T Consensus 119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 77777777655 467777777777777777777776432222557777777777765
No 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=9.8e-20 Score=152.87 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=124.8
Q ss_pred CHHHHhcCCCCCCCCceeEEEecCCccccc-cccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCC
Q 023443 5 TADLIWKSPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP 81 (282)
Q Consensus 5 ~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~ 81 (282)
+.+.+...+. .-.++|++|+|++|.|+.+ |..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++
T Consensus 27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 3334444333 2238899999999999987 478889999999999999999986 47899999999999999999999
Q ss_pred CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
..|..+++|++|++++|.|+.+|. .+..+++|++|++++|+|+.++.. .+..+++|+.|++++|..
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCB
T ss_pred hHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCc
Confidence 988899999999999999999987 789999999999999999999875 578899999999999764
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=4e-21 Score=180.46 Aligned_cols=178 Identities=17% Similarity=0.133 Sum_probs=154.5
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|++|++++|.|+.++ ..+..+++|++|++++|.|+.++ .|..+++|++|++++|+++++++..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 78999999999999775 78899999999999999999885 6999999999999999999999887789999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT 174 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
++|.+++++....++++++|++|++++|. +..+|.. .+..+++|++|++++|.. ..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l--------------------~~ 162 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSL--------------------RN 162 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTC--------------------CE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCcc--------------------cc
Confidence 99999965321378999999999999998 6778754 578999999999998763 22
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHh-hcccChHHHHHHHHhh
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVL 225 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l-~~~~~L~~L~l~~N~l 225 (282)
..|..+. .+++|+.|+++.|.+..+|..+ ..+++|++|++++|.+
T Consensus 163 ~~~~~l~------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 163 YQSQSLK------SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp ECTTTTT------TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred cChhhhh------ccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 3466666 7889999999999999888775 5689999999999999
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.8e-21 Score=185.01 Aligned_cols=131 Identities=25% Similarity=0.291 Sum_probs=119.0
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
+++++|+|++|+|+.|| ..|.++++|++|+|++|.|+.++ .|.++++|++|+|++|+|+++|+++|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999998 68999999999999999999986 6999999999999999999999999999999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
++|.|+++++ ..|+++++|++|++++|.++.++... .++.+++|++|++++|++
T Consensus 132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCccc
Confidence 9999999997 57999999999999999998653221 578899999999999754
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.7e-21 Score=182.97 Aligned_cols=123 Identities=21% Similarity=0.217 Sum_probs=85.9
Q ss_pred cCHHHHhc--CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 4 l~~~~i~~--~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~ 78 (282)
++.+.+.. +..|.++++|++|++++|+|+.++ ..|..+++|++|++++|.+++++ .|+.+++|++|++++|.+++
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 34444433 345777888888888888887665 66777888888888888887775 37777888888888887775
Q ss_pred cC-CCcccCCccccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443 79 IN-PNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITK 127 (282)
Q Consensus 79 ~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 127 (282)
++ +..+.++++|++|++++|. +..+++ ..|.++++|++|++++|.++.
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCE
T ss_pred cchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccc
Confidence 42 2345577777777777776 555554 366777777777777777664
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1e-20 Score=182.14 Aligned_cols=112 Identities=26% Similarity=0.277 Sum_probs=51.1
Q ss_pred CCCCCCceeEEEecCCccc-ccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc--cCCCcccCC
Q 023443 14 HFFNAIKERELDLRGNKIA-VIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR--INPNIGEFL 87 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~-~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l 87 (282)
.|..+++|++|++++|.+. .+| ..+..+++|++|++++|.+..++ .|..+++|++|++++|.+.. ..+..+.++
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 4455555555555555554 344 34455555555555555554432 33444444444444444331 122223344
Q ss_pred ccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 88 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 126 (282)
++|++|++++|.++++++ ..|.++++|++|++++|+++
T Consensus 480 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 480 RNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCG
T ss_pred CCCCEEECCCCCCCcCCh-hhhccccccCEEeCCCCCcc
Confidence 444444444444444443 23444444444444444444
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=7e-21 Score=187.99 Aligned_cols=219 Identities=17% Similarity=0.149 Sum_probs=129.2
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++|+.|++++|.+..++ ..+..+++|+.|+|++|.|+.++ .|..+++|++|++++|.++++++..+.++++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45666666666666443 55566666666666666666552 4666666666666666666665555566666666666
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC-------------------c------------------hHHHHhh
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN-------------------Y------------------RLYVIHK 138 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-------------------~------------------~~~~l~~ 138 (282)
++|.++.+++ ..|.++++|+.|++++|.++.++. . ....+..
T Consensus 346 ~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 346 QKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 6666666655 356666666666666665554321 0 0112446
Q ss_pred CCCCcEecCcccHHHHH---HhccChhHHHHHhhh----ccc------cccCCCCCCCcchhhcCCCeeeCCChhHHHHH
Q 023443 139 LKSLRVLDFKKERMEAA---SLFASEEMEEEAKKE----SMK------TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI 205 (282)
Q Consensus 139 l~~L~~L~ls~~~~~~~---~~~~~~~~~~~~~~~----~~~------~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 205 (282)
+++|+.|++++|++... ..+.... .+..+ +.. ...+..+. .+++|+.|+|++|+|+.+
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~L~~L~Ls~N~l~~~~~~~~~~~~~~------~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENP---SLEQLFLGENMLQLAWETELCWDVFE------GLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCT---TCCBCEEESCCCSSSCCSCCCSSCSS------CBCCEECCCCCHHHHTTC
T ss_pred CCccceeeCCCCcccccccccccccCC---ccccccCCCCccccccccccchhhhc------CcccccEEECCCCccccc
Confidence 77777777777653210 0011100 01111 111 11122233 788999999999999976
Q ss_pred HH-HhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443 206 KA-AIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 206 p~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~ 250 (282)
|+ .+..+++|++|++++|.+ ..+|+.... .....++...+..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRL--TVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCC--SSCCCCCCC-SCCCEEEEEEECC
T ss_pred ChhHccchhhhheeECCCCCC--CccChhhhh-ccccEEECCCCcC
Confidence 65 478999999999999999 556655443 3344444444443
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.5e-21 Score=184.35 Aligned_cols=172 Identities=22% Similarity=0.317 Sum_probs=83.9
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
++|++|+|++|.|+.|| ..+++|++|++++|.|+++|.+.. +|++|++++|.|+++|+ .+++|++|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence 34555555555555444 224455555555555555444322 45555555555555443 2445555555555
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCC
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPV 178 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (282)
.|+++|. .+++|+.|++++|+|+.+|. +. ++|++|++++|++ ..+|.
T Consensus 151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N~L---------------------~~lp~ 197 (571)
T 3cvr_A 151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTNLL---------------------ESLPA 197 (571)
T ss_dssp CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSSCC---------------------SSCCC
T ss_pred ccCcCCC-----cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCCCC---------------------Cchhh
Confidence 5554432 23455555555555555544 11 4555555555432 22333
Q ss_pred CCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCC
Q 023443 179 EVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 235 (282)
Q Consensus 179 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~ 235 (282)
+.. .-......|+.|+|++|+|+.||..+.++++|+.|++++|.+ ++.+|..++
T Consensus 198 -~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l-~~~~p~~l~ 251 (571)
T 3cvr_A 198 -VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL-SSRIRESLS 251 (571)
T ss_dssp -CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC-CHHHHHHHH
T ss_pred -HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC-CCcCHHHHH
Confidence 320 000011122666666666666666666666666666666666 455554443
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=5.2e-21 Score=176.54 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=165.6
Q ss_pred CCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
+..++++++|++|++++|.|+.+| .+..+++|++|++++|.|+++| ++.+++|++|++++|.+++++ +.++++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence 345667899999999999999987 6788999999999999999997 889999999999999999985 56899999
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh-
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE- 170 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~- 170 (282)
+|++++|.+++++ ++.+++|++|++++|+++.++ ++.+++|++|++++|.......+........+...
T Consensus 110 ~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred EEECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 9999999999863 778999999999999999985 47899999999999742111111111111000000
Q ss_pred ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCCCCCcccccC
Q 023443 171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 250 (282)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~~~~~~~~~~ 250 (282)
+....+| +. .+++|+.|++++|+++.+ .++.+++|++|++++|.+ ..|| ++.......++...+..
T Consensus 180 n~l~~l~--l~------~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l--~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 180 NKITELD--VS------QNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL--TEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp SCCCCCC--CT------TCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCC--SCCC--CTTCTTCSEEECCSSCC
T ss_pred Cccceec--cc------cCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcc--cccC--ccccCCCCEEEeeCCcC
Confidence 1222233 33 778999999999999987 389999999999999999 4587 66666666666666665
Q ss_pred CCC
Q 023443 251 EKM 253 (282)
Q Consensus 251 ~~~ 253 (282)
...
T Consensus 246 ~~~ 248 (457)
T 3bz5_A 246 TEL 248 (457)
T ss_dssp SCC
T ss_pred CCc
Confidence 443
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=152.65 Aligned_cols=150 Identities=24% Similarity=0.267 Sum_probs=123.7
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC---CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
+.+++++|.++.||..+ ...+++|+|++|.|+.++ .|..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 58899999999998655 346789999999999873 3788999999999999999998888888999999999999
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCC
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPV 178 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (282)
.|+++++ ..|.++++|++|+|++|+|+.+++. .|..+++|++|++++|.+ ....|.
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l--------------------~~~~~~ 147 (220)
T 2v70_A 92 RLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQI--------------------TTVAPG 147 (220)
T ss_dssp CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCC--------------------CCBCTT
T ss_pred ccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcC--------------------CEECHH
Confidence 9999887 5688899999999999999988654 567889999999998763 122355
Q ss_pred CCCCCcchhhcCCCeeeCCChhHHH
Q 023443 179 EVPNVSEEEEQQTPKVVAPTPEQII 203 (282)
Q Consensus 179 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 203 (282)
.+. .+++|+.|+|++|.+.
T Consensus 148 ~~~------~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFD------TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTT------TCTTCCEEECCSCCEE
T ss_pred Hhc------CCCCCCEEEecCcCCc
Confidence 555 7888999999999876
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=9.9e-20 Score=145.21 Aligned_cols=136 Identities=29% Similarity=0.377 Sum_probs=122.4
Q ss_pred CCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
...++|++|++++|.|+ .+|..+..+++|++|++++|.|+.++.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34588999999999999 8998889999999999999999999889999999999999999999767777679999999
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
++++|.|++++.+..+..+++|++|++++|+++.++.+....+..+++|++|+++++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999998743488999999999999999999987444468899999999999865
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=3.6e-20 Score=151.81 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=126.1
Q ss_pred CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
..+++|+.|++++|.|+.+| .+..+++|++|++++|.++.++.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45678999999999999888 67789999999999999888888889999999999999999855555678999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCc-CCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccc
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKT 174 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
++|.++...+ ..++.+++|++|++++|. ++.++. +..+++|++|++++|.+ .
T Consensus 120 s~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i---------------------~ 172 (197)
T 4ezg_A 120 SHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGV---------------------H 172 (197)
T ss_dssp CSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCC---------------------C
T ss_pred cCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCC---------------------c
Confidence 9999987443 378899999999999998 888874 78899999999998763 1
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHH
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA 204 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 204 (282)
.++ .+. .+++|+.|++++|++..
T Consensus 173 ~~~-~l~------~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYR-GIE------DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCT-TGG------GCSSCCEEEECBC----
T ss_pred ChH-Hhc------cCCCCCEEEeeCcccCC
Confidence 122 222 67899999999998763
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.9e-21 Score=183.19 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=108.1
Q ss_pred CceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++++.|++++|.|+.++ ..|..+++|++|++++|.++.++ .|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56888999999988776 57888889999999999888875 5888889999999999988888888888889999999
Q ss_pred cCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc--cCCchHHHHhhCCCCcEecCcccHH
Q 023443 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 96 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
++|.++.+++ ..++++++|++|++++|.++. +|. .++++++|++|++++|++
T Consensus 108 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCC
T ss_pred cccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCcc
Confidence 9998888876 368888889999999998885 566 578888899998888543
No 87
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=150.70 Aligned_cols=145 Identities=25% Similarity=0.366 Sum_probs=125.1
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCcccccc--ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~ 78 (282)
.++.+.+...+. .-...+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.+++
T Consensus 17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence 344444544443 11346789999999999884 45889999999999999999986 69999999999999999999
Q ss_pred cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+++..|.++++|++|+|++|.|+++++ ..|..+++|++|+|++|+|+.+++. .|..+++|+.|++++|..
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCE
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCC
Confidence 999988899999999999999999976 5899999999999999999998554 678999999999999764
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.5e-20 Score=159.93 Aligned_cols=165 Identities=24% Similarity=0.294 Sum_probs=143.1
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
.++.+.+...+.+..+++|++|++++|.|+.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++ .
T Consensus 52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~ 129 (291)
T 1h6t_A 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-G 129 (291)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-G
T ss_pred EccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-h
Confidence 4556667777788999999999999999999887 8889999999999999999999999999999999999999984 3
Q ss_pred cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
+..+++|++|++++|.+++++ .+..+++|+.|++++|+++.++. +..+++|+.|++++|.+.
T Consensus 130 -l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~--------- 191 (291)
T 1h6t_A 130 -LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHIS--------- 191 (291)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC---------
T ss_pred -hcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCC---------
Confidence 458999999999999999983 68899999999999999999876 688999999999997631
Q ss_pred HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH
Q 023443 163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK 206 (282)
Q Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 206 (282)
.+|. +. .+++|+.|++++|+++..|
T Consensus 192 ------------~l~~-l~------~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ------------DLRA-LA------GLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ------------BCGG-GT------TCTTCSEEEEEEEEEECCC
T ss_pred ------------CChh-hc------cCCCCCEEECcCCcccCCc
Confidence 1221 33 6789999999999987655
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.5e-21 Score=183.89 Aligned_cols=180 Identities=18% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc---C-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
..+++|+.|++++|.+...... ..+++|++|++++|.++.+ + .+..+++|++|++++|.++++++. +..+++|+
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~ 399 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence 3456666666666665533222 4466666666666666654 2 345566666666666666666555 34666666
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES 171 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~ 171 (282)
+|++++|.+++.++...+..+++|++|++++|.+..++.. .+..+++|++|++++|....
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~----------------- 459 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQE----------------- 459 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGG-----------------
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCcc-----------------
Confidence 6666666666554323455666666666666666544332 34556666666666654210
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChHHHHHHHHhh
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~~L~l~~N~l 225 (282)
..+|..+. .+++|+.|++++|+++.+ |.++.++++|++|++++|.+
T Consensus 460 --~~~p~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 460 --NFLPDIFT------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp --GEECSCCT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --ccchhhhh------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 11233333 444555555555555533 44455555555555555555
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.8e-21 Score=185.25 Aligned_cols=175 Identities=18% Similarity=0.251 Sum_probs=140.5
Q ss_pred cCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 11 KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 11 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
....+..+++|+.|++++|.|..+| .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++.++ . +..+++|
T Consensus 35 ~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~-l~~l~~L 111 (605)
T 1m9s_A 35 DAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-S-LKDLKKL 111 (605)
T ss_dssp SEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-T-STTCTTC
T ss_pred cccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-h-hccCCCC
Confidence 3334556788888999999988887 46778899999999999988877888899999999999988875 3 4588899
Q ss_pred cEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh
Q 023443 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE 170 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~ 170 (282)
+.|+|++|.|+.++ .+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|++.
T Consensus 112 ~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~----------------- 166 (605)
T 1m9s_A 112 KSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQIS----------------- 166 (605)
T ss_dssp CEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCC-----------------
T ss_pred CEEEecCCCCCCCc---cccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCC-----------------
Confidence 99999999988864 5778889999999999998884 4788899999999887631
Q ss_pred ccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 171 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
.++. +. .+++|+.|+|++|+|+.+| .+..+++|+.|++++|.+
T Consensus 167 ----~~~~-l~------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 167 ----DIVP-LA------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ----CCGG-GT------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred ----Cchh-hc------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 1111 33 6778889999999888774 688888999999998888
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=7.9e-21 Score=180.57 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=148.2
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCc
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (282)
+..+-++-+++.||..+ .+++++|||++|.|+.++ .|.++++|++|+|++|+|+++++++|.++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 35677888899999765 358999999999999996 79999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCC
Q 023443 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVE 179 (282)
Q Consensus 100 l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 179 (282)
|+++++ ..|.++++|++|++++|+++.++.. .|+++++|++|++++|.+.. ...|..
T Consensus 112 l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~-------------------~~~~~~ 168 (635)
T 4g8a_A 112 IQSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQS-------------------FKLPEY 168 (635)
T ss_dssp CCEECG-GGGTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCC-------------------CCCCGG
T ss_pred CCCCCH-HHhcCCCCCCEEECCCCcCCCCChh---hhhcCcccCeeccccCcccc-------------------CCCchh
Confidence 999997 5899999999999999999999876 57899999999999976310 012333
Q ss_pred CCCCcchhhcCCCeeeCCChhHHHHH-HHHhhcccChH----HHHHHHHhhhCCCCCCCCCCC
Q 023443 180 VPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLE----EVARLEKVLKSGQLPADLKIP 237 (282)
Q Consensus 180 ~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~~~~L~----~L~l~~N~l~~g~iP~~l~~~ 237 (282)
+. .+++|++|++++|+|+.+ |..+..+.+++ .++++.|.+ ..+|+.....
T Consensus 169 ~~------~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l--~~i~~~~~~~ 223 (635)
T 4g8a_A 169 FS------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKE 223 (635)
T ss_dssp GG------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC--CEECTTTTTT
T ss_pred hc------cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc--cccCcccccc
Confidence 33 788999999999999865 44555554443 244666777 5566555443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=4.8e-22 Score=170.52 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=112.5
Q ss_pred CCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
.+.++..+++++|.++.++ .+..+++|++|++++|.|+.++.+..+++|++|++++|+++++++ +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3445666667777777666 455677777777777777777766777777777777777777765 4567777777777
Q ss_pred CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhcccccc
Q 023443 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLM 176 (282)
Q Consensus 97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (282)
+|++++++. +.. ++|+.|++++|.++.++. +..+++|+.|++++|++. .+
T Consensus 94 ~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~---------------------~~ 143 (263)
T 1xeu_A 94 RNRLKNLNG---IPS-ACLSRLFLDNNELRDTDS-----LIHLKNLEILSIRNNKLK---------------------SI 143 (263)
T ss_dssp SSCCSCCTT---CCC-SSCCEEECCSSCCSBSGG-----GTTCTTCCEEECTTSCCC---------------------BC
T ss_pred CCccCCcCc---ccc-CcccEEEccCCccCCChh-----hcCcccccEEECCCCcCC---------------------CC
Confidence 777777664 222 677777777777776653 567777777777776521 11
Q ss_pred CCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 177 PVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 177 p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
+ .+ ..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+
T Consensus 144 ~-~l------~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 144 V-ML------GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp G-GG------GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred h-HH------ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 1 12 2566777777777777766 5667777777777777777
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.6e-21 Score=179.10 Aligned_cols=200 Identities=18% Similarity=0.123 Sum_probs=125.5
Q ss_pred CCCCceeEEEecCCcccccc-ccccCC---CCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 16 FNAIKERELDLRGNKIAVIE-NLGATE---DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip-~~~~~l---~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..++.+..+++|++|++++|++++..+..+..+++|+
T Consensus 273 ~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 4455555555555555 444 222222 45666666666665554446677777777777777775455555777777
Q ss_pred EEeccCCcCCCCCCC-CCCCCCCCccEEEeeCCcCCc-cCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhh
Q 023443 92 TLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKK 169 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~ 169 (282)
+|++++|.+++++.+ ..++.+++|++|++++|.++. +|.. .+..+++|+.|++++|++..
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~--------------- 413 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTD--------------- 413 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCG---------------
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCc---------------
Confidence 777777777753310 146677777777777777776 6653 34566777777777765311
Q ss_pred hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC-CCCCCCCCCCCcccc
Q 023443 170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD-LKIPDYDSGSKDVKE 248 (282)
Q Consensus 170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~-l~~~~~~~~~~~~~~ 248 (282)
..|..+. ++|+.|++++|+++.+|..+..+++|++|++++|.+ ..+|.. +........++...+
T Consensus 414 -----~~~~~l~--------~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 414 -----TIFRCLP--------PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp -----GGGGSCC--------TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred -----chhhhhc--------ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC--CccCHHHhccCCcccEEECcCC
Confidence 1122111 478888888888888888888888888888888888 577776 444444444544444
Q ss_pred c
Q 023443 249 N 249 (282)
Q Consensus 249 ~ 249 (282)
.
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=8e-21 Score=169.30 Aligned_cols=202 Identities=20% Similarity=0.259 Sum_probs=147.6
Q ss_pred CCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccc-cC--CCCCCCccCe-EeccCCcCcccCCCcccCCccccE
Q 023443 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGT-LIINNNRITRINPNIGEFLPKLHT 92 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~ 92 (282)
.+++++|+|++|+|+.|| ..|.++++|++|+|++|.+.+ +| .|.+++++.. +.+++|+++.+++..|.++++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 367999999999999999 578999999999999999855 55 5788888776 566789999999999999999999
Q ss_pred EeccCCcCCCCCCCCCCCCCCCccEEEeeC-CcCCccCCchHHHHhhCC-CCcEecCcccHHH--HHHhccChhHHHHHh
Q 023443 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLK-SLRVLDFKKERME--AASLFASEEMEEEAK 168 (282)
Q Consensus 93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~-~L~~L~ls~~~~~--~~~~~~~~~~~~~~~ 168 (282)
|++++|.|+.+++ ..+....++..+++.+ |.+..++.. .|..+. .++.|++++|++. ....|.......+..
T Consensus 109 L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 109 LLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccccCCc-hhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 9999999999887 3666777788888865 678888875 344443 6888999986542 122333221111111
Q ss_pred -hhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHH-hhcccChHHHHHHHHhhhCCCCCC
Q 023443 169 -KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLPA 232 (282)
Q Consensus 169 -~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-l~~~~~L~~L~l~~N~l~~g~iP~ 232 (282)
..+....+|...+ ..+++|++|+|++|+|+.||.. +.++++|+.++. +.+ ..+|+
T Consensus 185 ~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l--~~lP~ 241 (350)
T 4ay9_X 185 SDNNNLEELPNDVF-----HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL--KKLPT 241 (350)
T ss_dssp TTCTTCCCCCTTTT-----TTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTC--CCCCC
T ss_pred ccCCcccCCCHHHh-----ccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCc--CcCCC
Confidence 1133445665443 3788899999999999988854 667777766554 445 67774
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.80 E-value=1.3e-19 Score=141.75 Aligned_cols=134 Identities=26% Similarity=0.390 Sum_probs=118.7
Q ss_pred CCCCceeEEEecCCccc--cccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEE
Q 023443 16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 93 (282)
...++|+.|++++|.++ .+|..+..+++|++|++++|.++.++.++.+++|++|++++|.+++..+..+..+++|++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34578999999999999 8999889999999999999999999889999999999999999999556666679999999
Q ss_pred eccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 94 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
++++|.+++++....++.+++|++|++++|+++.++.+....+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999975223789999999999999999999874333689999999999874
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.4e-21 Score=171.31 Aligned_cols=176 Identities=11% Similarity=0.112 Sum_probs=141.1
Q ss_pred CCCCceeEEEecCCcccc-cc----ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc---cCC-Ccc
Q 023443 16 FNAIKERELDLRGNKIAV-IE----NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR---INP-NIG 84 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~---~~~-~~~ 84 (282)
..+++|++|++++|.++. ++ ..+..+++|++|+|++|.|+.++ .|+.+++|++|+|++|++.+ ++. ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 789999999999999984 22 33457899999999999999875 68899999999999999865 433 333
Q ss_pred cCCccccEEeccCCcCCCCCCC--CCCCCCCCccEEEeeCCcCCcc-CCchHHHHhhC---CCCcEecCcccHHHHHHhc
Q 023443 85 EFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKK-PNYRLYVIHKL---KSLRVLDFKKERMEAASLF 158 (282)
Q Consensus 85 ~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~l~~l---~~L~~L~ls~~~~~~~~~~ 158 (282)
..+++|++|++++|.++.++.. ..++.+++|++|+|++|+++.+ |. .+..+ ++|++|++++|++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~~L~~L~Ls~N~l------ 263 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP----SAPRCMWSSALNSLNLSFAGL------ 263 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS----CCSSCCCCTTCCCEECCSSCC------
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh----hHHhccCcCcCCEEECCCCCC------
Confidence 5789999999999999876541 0146789999999999999976 55 34555 6999999999863
Q ss_pred cChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 159 ASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
..+|..+. ++|+.|+|++|+|+.+|. +..+++|++|++++|.+
T Consensus 264 ---------------~~lp~~~~--------~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 264 ---------------EQVPKGLP--------AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---------------CSCCSCCC--------SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ---------------Cchhhhhc--------CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 23454443 589999999999998765 78889999999999988
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=4.7e-20 Score=158.07 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=137.8
Q ss_pred HHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCccc
Q 023443 6 ADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGE 85 (282)
Q Consensus 6 ~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 85 (282)
.+.+.+.+.+..+++|++|++++|.|+.+| .+..+++|++|++++|.|+.++.+..+++|++|++++|+++++++..
T Consensus 28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~-- 104 (263)
T 1xeu_A 28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP-- 104 (263)
T ss_dssp CSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--
T ss_pred CCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--
Confidence 344445556778899999999999999998 67789999999999999999977999999999999999999987643
Q ss_pred CCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHH
Q 023443 86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEE 165 (282)
Q Consensus 86 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~ 165 (282)
. ++|++|++++|.+++++ .+..+++|+.|++++|+++.++. +..+++|+.|++++|++..
T Consensus 105 ~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~L~~L~L~~N~i~~----------- 164 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLDLHGNEITN----------- 164 (263)
T ss_dssp C-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG-----GGGCTTCCEEECTTSCCCB-----------
T ss_pred c-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH-----HccCCCCCEEECCCCcCcc-----------
Confidence 3 89999999999999975 58899999999999999999864 7899999999999976311
Q ss_pred HHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHH
Q 023443 166 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKA 207 (282)
Q Consensus 166 ~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 207 (282)
+ ..+. .+++|+.|++++|.++..|.
T Consensus 165 ----------~-~~l~------~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 ----------T-GGLT------RLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----------C-TTST------TCCCCCEEEEEEEEEECCCE
T ss_pred ----------h-HHhc------cCCCCCEEeCCCCcccCCcc
Confidence 1 2233 67899999999999886653
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=1.7e-19 Score=166.22 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=110.3
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
.++.+.+...+.+.++++|++|++++|.++.+|... ++|++|++++|.++.+|.++.+++|++|++++|+++++|.
T Consensus 179 ~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~- 254 (454)
T 1jl5_A 179 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD- 254 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-
T ss_pred ECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-
Confidence 344455555556777777777777777777766543 4777777777777777777778888888888888877654
Q ss_pred cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHH-------------hhC-CCCcEecCc
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI-------------HKL-KSLRVLDFK 148 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l-------------~~l-~~L~~L~ls 148 (282)
.+++|++|++++|.++++|. . +++|+.|++++|+++.+|...- .+ ..+ ++|++|+++
T Consensus 255 ---~~~~L~~L~l~~N~l~~l~~--~---~~~L~~L~ls~N~l~~l~~~~~-~L~~L~l~~N~l~~i~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 255 ---LPPSLEALNVRDNYLTDLPE--L---PQSLTFLDVSENIFSGLSELPP-NLYYLNASSNEIRSLCDLPPSLEELNVS 325 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSEESCCCT-TCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred ---cccccCEEECCCCcccccCc--c---cCcCCEEECcCCccCcccCcCC-cCCEEECcCCcCCcccCCcCcCCEEECC
Confidence 23567777777777777654 2 2566677777776665543100 00 011 355555555
Q ss_pred ccHHHHHHhccChhHHHHHhhh----ccccccCCCCCCCcchhhcCCCeeeCCChhHHHH---HHHHhhcc---------
Q 023443 149 KERMEAASLFASEEMEEEAKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA---IKAAIVNS--------- 212 (282)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~---ip~~l~~~--------- 212 (282)
+|++.. +.... ..+..+ +....+|. .+++|++|++++|+++. +|.++..+
T Consensus 326 ~N~l~~--lp~~~---~~L~~L~L~~N~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 326 NNKLIE--LPALP---PRLERLIASFNHLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp SSCCSC--CCCCC---TTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred CCcccc--ccccC---CcCCEEECCCCccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 544321 00000 001111 11122222 35789999999999986 66788777
Q ss_pred ----cChHHHHHHHHhhhCC--CCCCCCCCCC
Q 023443 213 ----QTLEEVARLEKVLKSG--QLPADLKIPD 238 (282)
Q Consensus 213 ----~~L~~L~l~~N~l~~g--~iP~~l~~~~ 238 (282)
++|+.|++++|.+ .| .||.++....
T Consensus 392 ~~~~~~L~~L~ls~N~l-~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 392 PELPQNLKQLHVETNPL-REFPDIPESVEDLR 422 (454)
T ss_dssp --------------------------------
T ss_pred ccccCcCCEEECCCCcC-CccccchhhHhhee
Confidence 8899999999999 44 8998877653
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.5e-22 Score=182.62 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=151.5
Q ss_pred CHHHHhcC-CCCCCCCceeEEEecCCcccc-----ccccccCCCCCcEEeccCCCcccc----C-C-------CCCCCcc
Q 023443 5 TADLIWKS-PHFFNAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL----E-N-------MPHLNRL 66 (282)
Q Consensus 5 ~~~~i~~~-~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~~i----~-~-------~~~l~~L 66 (282)
+...+... ..+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.+..+ | . +..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 33344433 345678899999999999984 445577899999999999876533 3 2 4788999
Q ss_pred CeEeccCCcCcc----cCCCcccCCccccEEeccCCcCCCCCCC---CCCCCC---------CCccEEEeeCCcCC--cc
Q 023443 67 GTLIINNNRITR----INPNIGEFLPKLHTLVLTNNRLVNLVEI---DPLTSL---------PKLQFLSLLDNSIT--KK 128 (282)
Q Consensus 67 ~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~l---------~~L~~L~L~~N~l~--~i 128 (282)
++|+|++|.++. ..+..+..+++|++|+|++|.++..... ..+..+ ++|++|++++|+++ .+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999999987 2233446899999999999999743320 023333 89999999999997 34
Q ss_pred CCchHHHHhhCCCCcEecCcccHHHHHH---hcc-ChhHHHHHhhh----ccc-----cccCCCCCCCcchhhcCCCeee
Q 023443 129 PNYRLYVIHKLKSLRVLDFKKERMEAAS---LFA-SEEMEEEAKKE----SMK-----TLMPVEVPNVSEEEEQQTPKVV 195 (282)
Q Consensus 129 p~~~~~~l~~l~~L~~L~ls~~~~~~~~---~~~-~~~~~~~~~~~----~~~-----~~~p~~~~~~~~~~~l~~L~~L 195 (282)
+.. ...+..+++|++|++++|++.... +.. .......+..+ +.. ..+|..+. .+++|+.|
T Consensus 177 ~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~------~~~~L~~L 249 (386)
T 2ca6_A 177 KEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK------SWPNLREL 249 (386)
T ss_dssp HHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG------GCTTCCEE
T ss_pred HHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc------cCCCcCEE
Confidence 421 115778999999999997654322 111 11111111111 111 11233333 67899999
Q ss_pred CCChhHHHH-----HHHHhhc--ccChHHHHHHHHhhhCC----CCCCCC
Q 023443 196 APTPEQIIA-----IKAAIVN--SQTLEEVARLEKVLKSG----QLPADL 234 (282)
Q Consensus 196 ~Ls~N~l~~-----ip~~l~~--~~~L~~L~l~~N~l~~g----~iP~~l 234 (282)
+|++|+++. +|..+.. +++|+.|++++|.+ .+ .+|..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l 298 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVI 298 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC-CHHHHHHHHHHH
Confidence 999999873 5777744 99999999999998 33 266554
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=5.5e-20 Score=181.61 Aligned_cols=117 Identities=18% Similarity=0.095 Sum_probs=62.0
Q ss_pred CCCCCCCceeEEEecCCcc-ccc-cccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCccc-C-CCcccC
Q 023443 13 PHFFNAIKERELDLRGNKI-AVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRI-N-PNIGEF 86 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l-~~i-p~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~ 86 (282)
..|.++++|++|+|++|.+ ..| |..|.++++|++|+|++|.|+.+ | .|.++++|++|+|++|.+++. + ...+.+
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 3455555555555555532 244 34555555566666665555554 3 455555566666665555542 2 123445
Q ss_pred CccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443 87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129 (282)
Q Consensus 87 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip 129 (282)
+++|++|++++|.++++++...|+++++|++|++++|.++.+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 5556666666665555432124555556666666665555443
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.9e-20 Score=177.33 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=19.8
Q ss_pred CCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhh
Q 023443 190 QTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 190 ~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l 225 (282)
++|+.|+|++|+|+.||..+.++++|+.|++++|.+
T Consensus 261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 345555555555555555555555555555555555
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=2.3e-20 Score=176.18 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=120.4
Q ss_pred CCceeEEEecCCccc-cccccc-----cCC--------------------------CCCcEEeccCCCccccCCCCCCCc
Q 023443 18 AIKERELDLRGNKIA-VIENLG-----ATE--------------------------DQFDTIDLSDNEIVKLENMPHLNR 65 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~-~ip~~~-----~~l--------------------------~~L~~L~Ls~N~l~~i~~~~~l~~ 65 (282)
.++|++|++++|.++ .+|..+ ..+ .+|+.|++++|.+..++....+++
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 347888888888877 677544 112 346667777777665544467788
Q ss_pred cCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCC-CCCCCCCCccEEEeeCCcCCc-cCCchHHHHhhCCCCc
Q 023443 66 LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLR 143 (282)
Q Consensus 66 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~ 143 (282)
|++|++++|.+++..+..+.++++|++|++++|++++++.+ ..++++++|++|++++|+++. +|.. .+..+++|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~ 431 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESIL 431 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCC
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCC
Confidence 88888888888886666667888888888888888876521 257788888888888888886 7764 356778888
Q ss_pred EecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHH
Q 023443 144 VLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK 223 (282)
Q Consensus 144 ~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N 223 (282)
+|++++|++.. . .|..+. ++|+.|++++|+|+.||..+..+++|++|++++|
T Consensus 432 ~L~l~~n~l~~-~-------------------~~~~l~--------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 432 VLNLSSNMLTG-S-------------------VFRCLP--------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp EEECCSSCCCG-G-------------------GGSSCC--------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred EEECCCCCCCc-c-------------------hhhhhc--------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 88888876421 0 111110 2555555666655555555555555555555555
Q ss_pred hhhCCCCCCC
Q 023443 224 VLKSGQLPAD 233 (282)
Q Consensus 224 ~l~~g~iP~~ 233 (282)
.+ ..||..
T Consensus 484 ~l--~~l~~~ 491 (562)
T 3a79_B 484 QL--KSVPDG 491 (562)
T ss_dssp CC--CCCCTT
T ss_pred CC--CCCCHH
Confidence 55 355554
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.7e-19 Score=157.99 Aligned_cols=133 Identities=25% Similarity=0.312 Sum_probs=99.1
Q ss_pred CC-CCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccc
Q 023443 15 FF-NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (282)
Q Consensus 15 ~~-~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 90 (282)
|. ++++|++|+|++|+|+.++ ..|..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|.++++|
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 44 7788888888888888776 56777888888888888888775 47778888888888888888877777778888
Q ss_pred cEEeccCCcCCCCCCCCCC---CCCCCccEEEeeCCcCCccCCchHHHHhhCCC--CcEecCcccH
Q 023443 91 HTLVLTNNRLVNLVEIDPL---TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS--LRVLDFKKER 151 (282)
Q Consensus 91 ~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~--L~~L~ls~~~ 151 (282)
++|+|++|.|+.+|. ..| ..+++|+.|+|++|+|+.+|.. .+..++. ++.|++++|.
T Consensus 139 ~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 139 QKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSC
T ss_pred CEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCC
Confidence 888888888888776 344 4677888888888888877754 4566665 3677777754
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=6.9e-19 Score=143.70 Aligned_cols=125 Identities=24% Similarity=0.302 Sum_probs=111.8
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC-C--CCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-N--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
+++++++|+|+.||..+. .++++|++++|.|+.++ . |..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999997654 38999999999999986 2 889999999999999999998888889999999999999
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|+++++ ..|.++++|++|+|++|+|+.+++. .+..+++|++|++++|..
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCB
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCc
Confidence 9999987 5799999999999999999977554 578899999999999764
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=6.2e-19 Score=167.77 Aligned_cols=166 Identities=24% Similarity=0.296 Sum_probs=144.0
Q ss_pred cccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCC
Q 023443 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81 (282)
Q Consensus 2 ~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~ 81 (282)
+.++.+.|...+.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++.++
T Consensus 48 L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~- 125 (605)
T 1m9s_A 48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN- 125 (605)
T ss_dssp CBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-
T ss_pred EECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-
Confidence 45666677778889999999999999999998887 8889999999999999999999999999999999999999974
Q ss_pred CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccCh
Q 023443 82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASE 161 (282)
Q Consensus 82 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 161 (282)
. +..+++|+.|+|++|.|+.+ + .+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+.
T Consensus 126 ~-l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~-------- 188 (605)
T 1m9s_A 126 G-LVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHIS-------- 188 (605)
T ss_dssp G-GGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC--------
T ss_pred c-ccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCC--------
Confidence 3 46899999999999999998 3 68899999999999999998876 689999999999997631
Q ss_pred hHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH
Q 023443 162 EMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK 206 (282)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 206 (282)
.+| .+. .+++|+.|+|++|++...|
T Consensus 189 -------------~l~-~l~------~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 -------------DLR-ALA------GLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -------------BCG-GGT------TCTTCSEEECCSEEEECCC
T ss_pred -------------CCh-HHc------cCCCCCEEEccCCcCcCCc
Confidence 111 233 6789999999999987654
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=140.89 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=113.8
Q ss_pred eEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcC
Q 023443 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (282)
Q Consensus 22 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 100 (282)
+++++++|.|+.+|..+ .++|++|++++|.|+.+| .|..+++|++|+|++|.|+++++..|.++++|++|+|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 67999999999999655 368999999999999997 789999999999999999999999889999999999999999
Q ss_pred CCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+.+++ ..|.++++|++|+|++|.|+.+|.. .|..+++|+.|++++|..
T Consensus 91 ~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCE
T ss_pred CEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCe
Confidence 99987 5899999999999999999999885 568899999999999654
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.4e-19 Score=165.25 Aligned_cols=181 Identities=16% Similarity=0.242 Sum_probs=110.1
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
++|++|++++|.++.+|.. +++|++|++++|.+++++.+. ++|++|++++|+++++| . +.++++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC
Confidence 4455555555555555532 256666666666666655332 57777777777777766 3 457778888888888
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhh----cccc
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKE----SMKT 174 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~----~~~~ 174 (282)
+++++|. .+ .+|++|++++|.++.+|. ++.+++|++|++++|+.... .... ..+..+ +...
T Consensus 164 ~l~~lp~--~~---~~L~~L~L~~n~l~~l~~-----~~~l~~L~~L~l~~N~l~~l---~~~~--~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 164 SLKKLPD--LP---PSLEFIAAGNNQLEELPE-----LQNLPFLTAIYADNNSLKKL---PDLP--LSLESIVAGNNILE 228 (454)
T ss_dssp CCSCCCC--CC---TTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSSC---CCCC--TTCCEEECCSSCCS
T ss_pred cCcccCC--Cc---ccccEEECcCCcCCcCcc-----ccCCCCCCEEECCCCcCCcC---CCCc--CcccEEECcCCcCC
Confidence 8777665 22 477788888888777764 57778888888877653210 0000 001111 1122
Q ss_pred ccCCCCCCCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443 175 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD 233 (282)
Q Consensus 175 ~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~g~iP~~ 233 (282)
.+| .+. .+++|++|++++|+++.+|.. .++|+.|++++|.+ ..+|..
T Consensus 229 ~lp-~~~------~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l--~~l~~~ 275 (454)
T 1jl5_A 229 ELP-ELQ------NLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL--TDLPEL 275 (454)
T ss_dssp SCC-CCT------TCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC--SCCCCC
T ss_pred ccc-ccC------CCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc--cccCcc
Confidence 233 233 677777777777777766642 35677777777777 446654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=143.00 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=121.6
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccc--cCCCCCCCccCeEeccCCcCcccC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LENMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~--i~~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
.++.+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+.|+.+++|++|++++|.+++..
T Consensus 50 ~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 128 (197)
T 4ezg_A 50 TLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128 (197)
T ss_dssp EEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG
T ss_pred eccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh
Confidence 345556666567889999999999999888776 66779999999999999997 348999999999999999999865
Q ss_pred CCcccCCccccEEeccCCc-CCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 81 PNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+..+..+++|++|++++|. ++.++ .+..+++|++|++++|+++.++. +..+++|++|++++|++
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC--
T ss_pred HHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCccc
Confidence 6666799999999999998 88875 57889999999999999999874 78999999999999875
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.9e-19 Score=172.04 Aligned_cols=186 Identities=17% Similarity=0.124 Sum_probs=121.8
Q ss_pred CCceeEEEecCCccccccccccCCCCCc-----EEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 18 AIKERELDLRGNKIAVIENLGATEDQFD-----TIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~-----~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
.+.++.|+|.+|.+..++..+.....|. .++++.|.+...+ .|..++.|+.|+|++|.+..+++.++ .+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence 3568899999999988774432222222 2333444444334 68889999999999999999998887 899999
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKES 171 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~ 171 (282)
+|+|++|.|+.+|. .|+.+++|++|+|++|.|+.+|. .|+.+++|++|+|++|.+
T Consensus 251 ~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l------------------- 305 (727)
T 4b8c_D 251 RLYLNGNSLTELPA--EIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMV------------------- 305 (727)
T ss_dssp CCBCTTSCCSCCCG--GGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCC-------------------
T ss_pred EEEeeCCcCcccCh--hhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCC-------------------
Confidence 99999999999887 89999999999999999999998 689999999999999762
Q ss_pred cccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhcccC-hHHHHHHHHhhhCCCCCCCCCCCC
Q 023443 172 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQT-LEEVARLEKVLKSGQLPADLKIPD 238 (282)
Q Consensus 172 ~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~~-L~~L~l~~N~l~~g~iP~~l~~~~ 238 (282)
..+|..+. .+++|+.|+|++|.|+ .+|..+..+.. +..+++.+|.+ .|.+|..+....
T Consensus 306 --~~lp~~~~------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l-~~~~p~~l~~l~ 365 (727)
T 4b8c_D 306 --TTLPWEFG------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP-EIPLPHERRFIE 365 (727)
T ss_dssp --CCCCSSTT------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----
T ss_pred --CccChhhh------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc-cCcCccccceeE
Confidence 34677776 8999999999999999 77777766543 34578999999 799999887653
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=5.2e-19 Score=168.67 Aligned_cols=204 Identities=18% Similarity=0.171 Sum_probs=105.1
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
++|++|++++|.|+.||. .+++|++|+|++|.|+.+|. .+++|++|++++|.++++|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC
Confidence 567777777777776665 35667777777777776664 45666666666666666654 2345555555555
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHh--------------hCCCCcEecCcccHHHHHHhccChhHH
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH--------------KLKSLRVLDFKKERMEAASLFASEEME 164 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~--------------~l~~L~~L~ls~~~~~~~~~~~~~~~~ 164 (282)
.|+.+|. . +++|++|++++|.++.+|... ..+. .+++|+.|++++|.+.... ....
T Consensus 132 ~l~~lp~--~---l~~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~--~~~~-- 201 (622)
T 3g06_A 132 QLTSLPV--L---PPGLQELSVSDNQLASLPALP-SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP--TLPS-- 201 (622)
T ss_dssp CCSCCCC--C---CTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCT--
T ss_pred CCCcCCC--C---CCCCCEEECcCCcCCCcCCcc-CCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC--Cccc--
Confidence 5555543 1 244555555555554443310 0011 1255666666665432100 0000
Q ss_pred HHHhhh----ccccccCCCCC-------------CCcchhhcCCCeeeCCChhHHHHHHHHhhcccChHHHHHHHHhhhC
Q 023443 165 EEAKKE----SMKTLMPVEVP-------------NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS 227 (282)
Q Consensus 165 ~~~~~~----~~~~~~p~~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~l~~~~~L~~L~l~~N~l~~ 227 (282)
.+..+ +....+|..+. .++ ..+++|+.|++++|+|+.||. .+++|+.|++++|.|
T Consensus 202 -~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L-- 273 (622)
T 3g06_A 202 -ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQL-- 273 (622)
T ss_dssp -TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC--
T ss_pred -hhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCC--
Confidence 00000 11111111100 000 134566666666666666665 456666677777777
Q ss_pred CCCCCCCCCCCCCCCCCccccc
Q 023443 228 GQLPADLKIPDYDSGSKDVKEN 249 (282)
Q Consensus 228 g~iP~~l~~~~~~~~~~~~~~~ 249 (282)
..||..++.......++...+.
T Consensus 274 ~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCGGGGGSCTTCEEECCSCC
T ss_pred CcCCHHHhhccccCEEEecCCC
Confidence 4667666665555555555544
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=1.4e-19 Score=161.15 Aligned_cols=209 Identities=12% Similarity=0.116 Sum_probs=157.1
Q ss_pred CCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcc-cCCCcccCCcc
Q 023443 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR-INPNIGEFLPK 89 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 89 (282)
+.+..+.. ++++.++++++.||..+ .+++++|+|++|+|+.+| .|.++++|++|+|++|++.+ +++++|.++++
T Consensus 4 ~~~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 4 HRICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp CSSSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CCccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 33444433 67899999999999765 468999999999999997 58999999999999999855 78888889988
Q ss_pred ccE-EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc-cHH--HHHHhccChhH-H
Q 023443 90 LHT-LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK-ERM--EAASLFASEEM-E 164 (282)
Q Consensus 90 L~~-L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~-~~~--~~~~~~~~~~~-~ 164 (282)
+.. +.+++|+++.+++ ..|..+++|++|++++|+++.++.. .+....++..|++.+ +++ .....|..... .
T Consensus 81 l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp CCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred hhhhhcccCCcccccCc-hhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccccchhhcchhh
Confidence 765 6777899999987 6899999999999999999999875 345566777888765 221 11122222211 0
Q ss_pred HHHh-hhccccccCCCCCCCcchhhcCCCeeeCCC-hhHHHHHHH-HhhcccChHHHHHHHHhhhCCCCCCCCCC
Q 023443 165 EEAK-KESMKTLMPVEVPNVSEEEEQQTPKVVAPT-PEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKI 236 (282)
Q Consensus 165 ~~~~-~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~-~l~~~~~L~~L~l~~N~l~~g~iP~~l~~ 236 (282)
..+. ..+....+|..++ ...+++.++++ +|.++.||. ++..+++|++|++++|+| ..||.....
T Consensus 157 ~~L~L~~N~i~~i~~~~f------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~ 223 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLE 223 (350)
T ss_dssp EEEECCSSCCCEECTTSS------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCT
T ss_pred hhhccccccccCCChhhc------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhc
Confidence 0000 1133445666655 56788999997 588889986 579999999999999999 888876543
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2.5e-18 Score=162.27 Aligned_cols=168 Identities=17% Similarity=0.246 Sum_probs=135.0
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~ 82 (282)
.|+.+.|...+ ..+++|++|++++|.|+.||. +.. +|++|+|++|.|+++|. .+++|++|++++|.|+++|.
T Consensus 86 ~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~- 157 (571)
T 3cvr_A 86 EITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE- 157 (571)
T ss_dssp ECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-
T ss_pred ECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC-
Confidence 45566666555 567999999999999999998 654 99999999999999988 78999999999999999876
Q ss_pred cccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChh
Q 023443 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEE 162 (282)
Q Consensus 83 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~ 162 (282)
.+++|++|++++|.|+++|. |. ++|+.|+|++|.|+.+|...-..+...+.|+.|++++|++
T Consensus 158 ---~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l---------- 219 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI---------- 219 (571)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCC----------
T ss_pred ---cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcc----------
Confidence 57899999999999999875 44 8999999999999999871000011123339999999873
Q ss_pred HHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhHHH-HHHHHhhccc
Q 023443 163 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQ 213 (282)
Q Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~~~ 213 (282)
..+|..+. .+++|+.|+|++|.|+ .+|..+..++
T Consensus 220 -----------~~lp~~l~------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 -----------THIPENIL------SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----------CCCCGGGG------GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -----------eecCHHHh------cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 34566666 6889999999999998 7888877654
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=136.70 Aligned_cols=123 Identities=26% Similarity=0.307 Sum_probs=109.0
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
.++.+.+...+.- -.++|++|++++|.|+.+|..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.++
T Consensus 16 ~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 16 RCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp ECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred EcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 3444555554432 236899999999999999999999999999999999999986 6999999999999999999999
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 127 (282)
+..|.++++|++|+|++|.|+.+++ ..|..+++|+.|++++|++..
T Consensus 95 ~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 95 PRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence 9988999999999999999999987 578999999999999999874
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3e-17 Score=131.89 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=113.0
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
..+.+++++|+++.+|..+ .++|+.|++++|.+++++ .|..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999999554 379999999999999986 478999999999999999999998888999999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
|.|+++++ ..+..+++|++|++++|.++.+|.. .+..+++|++|++++|..
T Consensus 86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCe
Confidence 99999987 5688999999999999999999885 457899999999999753
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=6e-17 Score=132.12 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=106.9
Q ss_pred ccCHHHHhcCCCCCCCCceeEEEecCCccccccc--cccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCCcCcc
Q 023443 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITR 78 (282)
Q Consensus 3 ~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N~l~~ 78 (282)
.++.+.+...+.-. ..+|++|++++|.|+.++. .+..+++|++|+|++|.|+++ | .|..+++|++|+|++|+|++
T Consensus 14 ~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 92 (192)
T 1w8a_A 14 DCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92 (192)
T ss_dssp ECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred EcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc
Confidence 34555555544321 2389999999999998885 488999999999999999998 4 79999999999999999999
Q ss_pred cCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCc
Q 023443 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127 (282)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 127 (282)
+++..|.++++|++|++++|+|+++++ ..|..+++|++|++++|+++.
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccC
Confidence 999988899999999999999999876 589999999999999999984
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.7e-17 Score=161.22 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=102.0
Q ss_pred CccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCC
Q 023443 29 NKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107 (282)
Q Consensus 29 N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 107 (282)
|.+...+..+..+..|+.|+|++|.|..+| .+..+++|++|+|++|.|+.+|+.+ .++++|++|+|++|.|+.+|.
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~-- 287 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA-- 287 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--
Confidence 333434567888999999999999999887 6778999999999999999887655 589999999999999998876
Q ss_pred CCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHH--HHhccChhHHHHHhhhccccccCCCCCCCcc
Q 023443 108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEA--ASLFASEEMEEEAKKESMKTLMPVEVPNVSE 185 (282)
Q Consensus 108 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 185 (282)
.|+.+++|++|+|++|.|+.+|. .|+.+++|++|+|++|.+.. ...+...........+. .+.+.+.+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~-~N~l~~~~----- 357 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR-DNRPEIPL----- 357 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH-HCCCCCCC-----
T ss_pred hhcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc-cCcccCcC-----
Confidence 88999999999999999999988 58899999999999976431 22222222111111111 11111111
Q ss_pred hhhcCCCeeeCCChh--------HHH-HHHHHhhcccChHHHHHHHHhh
Q 023443 186 EEEQQTPKVVAPTPE--------QII-AIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 186 ~~~l~~L~~L~Ls~N--------~l~-~ip~~l~~~~~L~~L~l~~N~l 225 (282)
...+..++++.| .|. .++..+.++..+....++.|.+
T Consensus 358 ---p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 358 ---PHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ---CCC-----------------------------------------CC
T ss_pred ---ccccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 134567777776 333 2233455666667777777777
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-16 Score=127.94 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=106.5
Q ss_pred cCHHHHhcCCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccC
Q 023443 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN 80 (282)
Q Consensus 4 l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~ 80 (282)
++.+.+...+ ..-.++|++|++++|+++.++ ..+..+++|++|++++|.|+.++ .|..+++|++|++++|.+++++
T Consensus 14 ~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 14 CNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp CCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 3333444433 223478999999999999888 56788999999999999999986 4789999999999999999999
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip 129 (282)
+..+..+++|++|++++|.++++++ ..+..+++|++|++++|++....
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence 9888899999999999999999987 56788999999999999998544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.9e-17 Score=153.12 Aligned_cols=124 Identities=27% Similarity=0.346 Sum_probs=107.6
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
.|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+| .|+.+++|++|+|++|.|+++| . +..+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-cCCCCCCcEEECCCC
Confidence 48899999999999987 888999999999999999888 7889999999999999999986 4 568999999999999
Q ss_pred cCCCCC-CCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecC
Q 023443 99 RLVNLV-EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147 (282)
Q Consensus 99 ~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l 147 (282)
.|++++ + ..++.+++|+.|+|++|+++.+|+.....+..+++|+.|++
T Consensus 519 ~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999984 3 38899999999999999999887765445677899998875
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=3.2e-16 Score=125.39 Aligned_cols=108 Identities=25% Similarity=0.331 Sum_probs=96.9
Q ss_pred ceeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
..+.+++++|.|+.+|..+ .++|++|+|++|.|++++ .|..+++|++|+|++|+|+++++..|.++++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578999999999999765 389999999999999984 689999999999999999999999988999999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 130 (282)
|+|+++++ ..|..+++|++|+|++|+++..+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999987 578999999999999999986553
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=4.4e-16 Score=125.09 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=96.8
Q ss_pred eeEEEecCCccccccccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 21 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
-+.+++++|.++.+|..+. ++|++|+|++|.|++++ .|..+++|++|+|++|+|+++|+.+|.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3789999999999997664 89999999999999984 6899999999999999999999998889999999999999
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (282)
Q Consensus 99 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 130 (282)
+|+.+++ ..|..+++|++|+|++|++...+.
T Consensus 92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 9999987 468999999999999999987765
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.1e-18 Score=156.18 Aligned_cols=211 Identities=17% Similarity=0.124 Sum_probs=108.2
Q ss_pred CCCCC-ceeEEEecCCcccccc-ccccCC-----CCCcEEeccCCCccccC--C----CCCC-CccCeEeccCCcCcccC
Q 023443 15 FFNAI-KERELDLRGNKIAVIE-NLGATE-----DQFDTIDLSDNEIVKLE--N----MPHL-NRLGTLIINNNRITRIN 80 (282)
Q Consensus 15 ~~~l~-~L~~L~Ls~N~l~~ip-~~~~~l-----~~L~~L~Ls~N~l~~i~--~----~~~l-~~L~~L~L~~N~l~~~~ 80 (282)
|..++ +|++|+|++|.|+... ..+..+ ++|++|+|++|.++..+ . +..+ ++|++|++++|.++..+
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 34454 5666666666665432 333332 56666666666666442 1 3333 56666666666666654
Q ss_pred CCcc----cC-CccccEEeccCCcCCCCCCC---CCCCCCC-CccEEEeeCCcCCccCCchHH-HHhhC-CCCcEecCcc
Q 023443 81 PNIG----EF-LPKLHTLVLTNNRLVNLVEI---DPLTSLP-KLQFLSLLDNSITKKPNYRLY-VIHKL-KSLRVLDFKK 149 (282)
Q Consensus 81 ~~~~----~~-l~~L~~L~L~~N~l~~~~~~---~~~~~l~-~L~~L~L~~N~l~~ip~~~~~-~l~~l-~~L~~L~ls~ 149 (282)
...+ .. .++|++|++++|.++..... ..+..++ +|++|++++|+++......+. .+..+ ++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 4322 12 24666777777666632210 0223333 677777777777655443221 23444 4777777777
Q ss_pred cHHHHHHhccChhHHHH-HhhhccccccCCCCCCCcc------hhhcCCCeeeCCChhH--------HHHHHHHhhcccC
Q 023443 150 ERMEAASLFASEEMEEE-AKKESMKTLMPVEVPNVSE------EEEQQTPKVVAPTPEQ--------IIAIKAAIVNSQT 214 (282)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~------~~~l~~L~~L~Ls~N~--------l~~ip~~l~~~~~ 214 (282)
|.+.....-........ ...+.....--..+.+.+. ...+++|+.|+|++|. +..++..+.++++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 65432100000000000 0011000000011111100 1356788888888888 5566667788888
Q ss_pred hHHHHHHHHhh
Q 023443 215 LEEVARLEKVL 225 (282)
Q Consensus 215 L~~L~l~~N~l 225 (282)
|++|++++|.+
T Consensus 286 L~~LdL~~N~l 296 (362)
T 3goz_A 286 IILVDKNGKEI 296 (362)
T ss_dssp EEEECTTSCBC
T ss_pred eEEEecCCCcC
Confidence 88888888887
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1e-16 Score=128.75 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=115.2
Q ss_pred cccCCCCCcEEeccCCCccccCCCCCCC-ccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCc
Q 023443 37 LGATEDQFDTIDLSDNEIVKLENMPHLN-RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL 115 (282)
Q Consensus 37 ~~~~l~~L~~L~Ls~N~l~~i~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 115 (282)
.+..+.+|+.|++++|.++.++.+..+. +|++|++++|.++++ + .+..+++|++|++++|.|+++++ ..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~-~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGE-GLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECS-CHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-c-ccccCCCCCEEECCCCcccccCc-chhhcCCCC
Confidence 4566899999999999999998777666 999999999999998 3 45689999999999999999986 345899999
Q ss_pred cEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHHHhhhccccccCCCCCCCcchhhcCCCeee
Q 023443 116 QFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVV 195 (282)
Q Consensus 116 ~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L 195 (282)
++|++++|.|+.+|... .+..+++|++|++++|.+.. +|.... .....+++|+.|
T Consensus 91 ~~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~---------------------~~~~~~--~~~~~l~~L~~L 145 (176)
T 1a9n_A 91 TELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTN---------------------KKHYRL--YVIYKVPQVRVL 145 (176)
T ss_dssp CEEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGG---------------------STTHHH--HHHHHCTTCSEE
T ss_pred CEEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCC---------------------cHhHHH--HHHHHCCcccee
Confidence 99999999999888621 47889999999999987521 111100 001267899999
Q ss_pred CCChhHHHHHHHH
Q 023443 196 APTPEQIIAIKAA 208 (282)
Q Consensus 196 ~Ls~N~l~~ip~~ 208 (282)
+++.|.+.....+
T Consensus 146 d~~~n~~~~~~~~ 158 (176)
T 1a9n_A 146 DFQKVKLKERQEA 158 (176)
T ss_dssp TTEECCHHHHHHH
T ss_pred CCCcCCHHHHHHH
Confidence 9999999865543
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=6.5e-19 Score=157.59 Aligned_cols=230 Identities=11% Similarity=0.072 Sum_probs=145.9
Q ss_pred CCCceeEEEecCCcccccc-----ccccCCC-CCcEEeccCCCccccC--CCCCC-----CccCeEeccCCcCcccCCCc
Q 023443 17 NAIKERELDLRGNKIAVIE-----NLGATED-QFDTIDLSDNEIVKLE--NMPHL-----NRLGTLIINNNRITRINPNI 83 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~ip-----~~~~~l~-~L~~L~Ls~N~l~~i~--~~~~l-----~~L~~L~L~~N~l~~~~~~~ 83 (282)
..++|++|+|++|.|+.++ ..+..++ +|++|+|++|.|+... .+..+ ++|++|+|++|.++..++..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3455999999999999766 4667788 8999999999999863 44443 89999999999999876652
Q ss_pred ----ccCC-ccccEEeccCCcCCCCCCCCC----CCC-CCCccEEEeeCCcCCccCCchH-HHHhhCC-CCcEecCcccH
Q 023443 84 ----GEFL-PKLHTLVLTNNRLVNLVEIDP----LTS-LPKLQFLSLLDNSITKKPNYRL-YVIHKLK-SLRVLDFKKER 151 (282)
Q Consensus 84 ----~~~l-~~L~~L~L~~N~l~~~~~~~~----~~~-l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~-~L~~L~ls~~~ 151 (282)
+..+ ++|++|++++|.|+..+. .. +.. .++|++|++++|.++......+ ..+..++ +|++|++++|+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2344 899999999999988764 23 334 3689999999999985433221 1456666 99999999976
Q ss_pred HHHHHhccChhHHH----HHhhh-ccccccCCC-CCCCcch-hh-cCCCeeeCCChhHHHH-----HHHHhhcccChHHH
Q 023443 152 MEAASLFASEEMEE----EAKKE-SMKTLMPVE-VPNVSEE-EE-QQTPKVVAPTPEQIIA-----IKAAIVNSQTLEEV 218 (282)
Q Consensus 152 ~~~~~~~~~~~~~~----~~~~~-~~~~~~p~~-~~~~~~~-~~-l~~L~~L~Ls~N~l~~-----ip~~l~~~~~L~~L 218 (282)
+............. .+..+ -..+.+... ...++.. .. .++|+.|+|++|+++. +...+..+++|++|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 53211000000000 01101 000111110 0000111 12 3478889999888853 34555777888888
Q ss_pred HHHHHhhhCCC--------CCCCCCCCCCCCCCCccccc
Q 023443 219 ARLEKVLKSGQ--------LPADLKIPDYDSGSKDVKEN 249 (282)
Q Consensus 219 ~l~~N~l~~g~--------iP~~l~~~~~~~~~~~~~~~ 249 (282)
++++|.+ .. ++..+........++...+.
T Consensus 259 ~L~~n~l--~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 259 YLDYDIV--KNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEHHHH--TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EeccCCc--cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8888885 32 23344444444445554444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.8e-17 Score=128.66 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCCCcEEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccE
Q 023443 41 EDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117 (282)
Q Consensus 41 l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 117 (282)
.++|+.|++++|.++ .+| .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++.++ ..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCE
Confidence 466777777777776 565 456677777777777777766 334467777777777777776333 24445677777
Q ss_pred EEeeCCcCCccCCchHHHHhhCCCCcEecCcccH
Q 023443 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 118 L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~ 151 (282)
|++++|.++.++... .+..+++|++|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~--~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 100 LNLSGNKLKDISTLE--PLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EECBSSSCCSSGGGG--GGSSCSCCCEEECCSSG
T ss_pred EeccCCccCcchhHH--HHhcCCCCCEEEeeCCc
Confidence 777777777665210 45666666666666654
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1e-17 Score=147.68 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=82.4
Q ss_pred CceeEEEecCCccccccccccCCCCCcEEeccCCCccc--cC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEec
Q 023443 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (282)
Q Consensus 19 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~--i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 95 (282)
++++.|++++|.+...+..+..+++|++|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 34445555555544433333344555555555555442 22 3344455555555555544322223334455555555
Q ss_pred cCC-cCCC--CCCCCCCCCCCCccEEEeeCC-cCCc--cCCchHHHHhhCC-CCcEecCcccHH--HHHHhccChhHHHH
Q 023443 96 TNN-RLVN--LVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLK-SLRVLDFKKERM--EAASLFASEEMEEE 166 (282)
Q Consensus 96 ~~N-~l~~--~~~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~-~L~~L~ls~~~~--~~~~~~~~~~~~~~ 166 (282)
++| .++. ++. .+..+++|++|++++| .++. ++. .+..++ +|++|++++++. ....
T Consensus 150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~~~~~~~~~---------- 213 (336)
T 2ast_B 150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGYRKNLQKSD---------- 213 (336)
T ss_dssp TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSCGGGSCHHH----------
T ss_pred CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCCcccCCHHH----------
Confidence 555 3432 222 3344455555555555 4442 222 344455 555555554421 0000
Q ss_pred HhhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HH-HHHHHhhcccChHHHHHHHHh
Q 023443 167 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-II-AIKAAIVNSQTLEEVARLEKV 224 (282)
Q Consensus 167 ~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~l~~~~~L~~L~l~~N~ 224 (282)
+|..+ ..+++|+.|++++|. ++ ..+..++++++|++|++++|.
T Consensus 214 ---------l~~~~------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 214 ---------LSTLV------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ---------HHHHH------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ---------HHHHH------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 00001 245567777777776 44 555666777777777776663
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1e-16 Score=141.37 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=96.8
Q ss_pred CCceeEEEecCCccc--------------------ccc-ccccC--------CCCCcEEeccCCCccccC--CCCCCCcc
Q 023443 18 AIKERELDLRGNKIA--------------------VIE-NLGAT--------EDQFDTIDLSDNEIVKLE--NMPHLNRL 66 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~--------------------~ip-~~~~~--------l~~L~~L~Ls~N~l~~i~--~~~~l~~L 66 (282)
+++|+.|||++|+|. .|| ..|.+ +++|+.|+|++ .++.|+ +|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999998 566 56777 99999999999 899886 79999999
Q ss_pred CeEeccCCcCcccCCCcccCCccccEEeccCCcC----CCCCCCCCC---------------------------------
Q 023443 67 GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL----VNLVEIDPL--------------------------------- 109 (282)
Q Consensus 67 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~--------------------------------- 109 (282)
+.+++++|.+..+++.+|.++.++..+.+..+.. ..+.. ..|
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999999999998888888777777776655221 11111 011
Q ss_pred -----------------CCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc
Q 023443 110 -----------------TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE 150 (282)
Q Consensus 110 -----------------~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~ 150 (282)
..+++|+.+++++|+++.||.+ .|.++++|+.+++.++
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc
Confidence 0267788888888888888877 5677888888888763
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.7e-17 Score=146.25 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=122.0
Q ss_pred CCCCCCCceeEEEecCCcccc--ccccccCCCCCcEEeccCCCcccc-C-CCCCCCccCeEeccCC-cCccc-CCCcccC
Q 023443 13 PHFFNAIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNN-RITRI-NPNIGEF 86 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~ 86 (282)
+.+..+++|++|++++|.++. ++..+..+++|++|++++|.++.. + .++.+++|++|++++| .++.. .+..+.+
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 345677888888888888773 677777788888888888887743 3 5667888888888888 67641 2333457
Q ss_pred CccccEEeccCC-cCCC--CCCCCCCCCCC-CccEEEeeCCc--CC--ccCCchHHHHhhCCCCcEecCcccHHHHHHhc
Q 023443 87 LPKLHTLVLTNN-RLVN--LVEIDPLTSLP-KLQFLSLLDNS--IT--KKPNYRLYVIHKLKSLRVLDFKKERMEAASLF 158 (282)
Q Consensus 87 l~~L~~L~L~~N-~l~~--~~~~~~~~~l~-~L~~L~L~~N~--l~--~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~ 158 (282)
+++|++|++++| .++. ++. .+..++ +|++|++++|. ++ .++. .+..+++|+.|+++++....
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~---- 236 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLK---- 236 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCC----
T ss_pred CCCCCEEcCCCCCCcChHHHHH--HHHhcccCCCEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCC----
Confidence 788888888888 7775 333 566777 88888888884 43 4454 56778888888888765200
Q ss_pred cChhHHHHHhhhccccccCCCCCCCcchhhcCCCeeeCCChhH-HH-HHHHHhhcccChHHHHHHHH
Q 023443 159 ASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-II-AIKAAIVNSQTLEEVARLEK 223 (282)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~l~~~~~L~~L~l~~N 223 (282)
...+..+. .+++|+.|++++|. +. .....++++++|+.|++++|
T Consensus 237 ---------------~~~~~~l~------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 ---------------NDCFQEFF------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ---------------GGGGGGGG------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ---------------HHHHHHHh------CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 00111222 56688888888885 22 11125777888888887766
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1e-15 Score=119.37 Aligned_cols=106 Identities=27% Similarity=0.286 Sum_probs=92.7
Q ss_pred CCCCCcEEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCcc
Q 023443 40 TEDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ 116 (282)
Q Consensus 40 ~l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 116 (282)
..++|+.|++++|.++ .+| .+..+++|++|++++|.++++ ..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 3578999999999999 677 678999999999999999998 445689999999999999999433 2667799999
Q ss_pred EEEeeCCcCCccC--CchHHHHhhCCCCcEecCcccHH
Q 023443 117 FLSLLDNSITKKP--NYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 117 ~L~L~~N~l~~ip--~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|++++|.++.++ . .+..+++|++|++++|.+
T Consensus 92 ~L~ls~N~i~~~~~~~----~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECTTSCCCSHHHHG----GGGGCTTCCEEECTTCGG
T ss_pred EEECCCCcCCChHHHH----HHhhCCCCCEEeCcCCcc
Confidence 9999999999875 4 588999999999999874
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=6.4e-18 Score=138.44 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=55.1
Q ss_pred ccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCC
Q 023443 34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP 113 (282)
Q Consensus 34 ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 113 (282)
+|..+..+++|++|++++|.|+.+|.+..+++|++|++++|.++.+|.. +..+++|++|++++|.+++++ .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~---~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS---GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH---HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC---ccccCC
Confidence 3334445555555555555555555444555555555555555554432 223455555555555555543 244445
Q ss_pred CccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|++|++++|+++.++.. ..+..+++|++|++++|..
T Consensus 116 ~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHH
T ss_pred CCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCcc
Confidence 555555555555544321 0344455555555555443
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=6.8e-15 Score=117.58 Aligned_cols=104 Identities=28% Similarity=0.375 Sum_probs=94.9
Q ss_pred CCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443 43 QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121 (282)
Q Consensus 43 ~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 121 (282)
..+.+++++|.++.+| .+. ++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++ ..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence 4689999999999998 453 899999999999999999888899999999999999999998 578999999999999
Q ss_pred CCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 122 ~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|+|+.++.. .|..+++|++|++++|..
T Consensus 87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHH---HhcCCCCCCEEEeCCCCC
Confidence 9999999885 578999999999999764
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1e-14 Score=117.02 Aligned_cols=103 Identities=23% Similarity=0.376 Sum_probs=94.1
Q ss_pred CcEEeccCCCccccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeC
Q 023443 44 FDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122 (282)
Q Consensus 44 L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 122 (282)
-+.+++++|.++.+| .+. ++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++ ..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence 478999999999998 454 899999999999999999888899999999999999999997 5688999999999999
Q ss_pred CcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 123 NSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 123 N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
|+|+.+|.. .|..+++|++|++++|.+
T Consensus 91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRG---AFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTT---TTTTCTTCSEEECCSSCB
T ss_pred CccceeCHH---HhccccCCCEEEeCCCCc
Confidence 999999985 478999999999999764
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=2.7e-15 Score=141.79 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=104.8
Q ss_pred cccCHHHHhcCCCCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccC-
Q 023443 2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN- 80 (282)
Q Consensus 2 ~~l~~~~i~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~- 80 (282)
+.|+.+.|...+.|..+++|+.|+|++|.|+.+|..++.+++|+.|+|++|.|+++|.|+.+++|++|+|++|+|++++
T Consensus 446 L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp EECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSST
T ss_pred EEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCC
Confidence 4567777777778999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCcccCCccccEEeccCCcCCCCCCCCCCC----CCCCccEEEe
Q 023443 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLT----SLPKLQFLSL 120 (282)
Q Consensus 81 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~l~~L~~L~L 120 (282)
|..+..+++|++|+|++|.|++.|+ .+. .+++|+.|++
T Consensus 526 p~~l~~l~~L~~L~L~~N~l~~~~~--~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGNSLCQEEG--IQERLAEMLPSVSSILT 567 (567)
T ss_dssp TGGGGGCTTCCEEECTTSGGGGSSS--CTTHHHHHCTTCSEEEC
T ss_pred cHHHhcCCCCCEEEecCCcCCCCcc--HHHHHHHHCcccCccCC
Confidence 6666799999999999999999887 333 3788998864
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=5.4e-17 Score=148.94 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=104.6
Q ss_pred CCCCCceeEEEecCCcccccc-cccc-----CCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccC--
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGA-----TEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN-- 80 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~-----~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~-- 80 (282)
+..+++|++|++++|.++... ..+. ..++|++|++++|.++.. + .+..+++|++|++++|.++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 345567777777777766321 1111 244667777777766652 2 3445666666666666665521
Q ss_pred ---CCcccCCccccEEeccCCcCCC-----CCCCCCCCCCCCccEEEeeCCcCCccCCchHH-HHh-hCCCCcEecCccc
Q 023443 81 ---PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIH-KLKSLRVLDFKKE 150 (282)
Q Consensus 81 ---~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~-~l~~L~~L~ls~~ 150 (282)
+..+..+++|++|++++|.++. ++. .+..+++|++|++++|.++......+. .+. ..++|+.|++++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 2333345666666666666665 333 344455666666666655422211000 000 1135555555553
Q ss_pred HHHHHHhccChhHHHHHhhhccccccCCCCCCC--cch-----hhcCCCeeeCCChhHHH-----HHHHHhhcccChHHH
Q 023443 151 RMEAASLFASEEMEEEAKKESMKTLMPVEVPNV--SEE-----EEQQTPKVVAPTPEQII-----AIKAAIVNSQTLEEV 218 (282)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~-----~~l~~L~~L~Ls~N~l~-----~ip~~l~~~~~L~~L 218 (282)
.+.................+.....-...+.+. ... ...++|+.|++++|+++ .+|..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 321110000000000000000000000000000 000 01458999999999988 788999999999999
Q ss_pred HHHHHhh
Q 023443 219 ARLEKVL 225 (282)
Q Consensus 219 ~l~~N~l 225 (282)
++++|.+
T Consensus 404 ~l~~N~i 410 (461)
T 1z7x_W 404 DLSNNCL 410 (461)
T ss_dssp ECCSSSC
T ss_pred ECCCCCC
Confidence 9999888
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=5e-17 Score=149.19 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCCCCceeEEEecCCccccc--cccccCCC----CCcEEeccCCCccc-----cC-CCCCCCccCeEeccCCcCcccCC-
Q 023443 15 FFNAIKERELDLRGNKIAVI--ENLGATED----QFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRITRINP- 81 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~----~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~L~~N~l~~~~~- 81 (282)
+..+++|++|++++|.|+.. ...+..+. +|++|++++|.|+. ++ .+..+++|++|++++|.++....
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 55667788888888877632 22233344 68888888888773 23 56777778888888777765322
Q ss_pred ----CcccCCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCC
Q 023443 82 ----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 82 ----~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~ 126 (282)
..+...++|++|++++|.++.... ...+..+++|+.|++++|.++
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 112234467777777776664220 013344556666666666554
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=3.8e-14 Score=125.55 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=95.2
Q ss_pred eEEEecCC-ccccccccccCCCCCcEEeccC-CCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccC
Q 023443 22 RELDLRGN-KIAVIENLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (282)
Q Consensus 22 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (282)
..++++++ +|+.||. +..+++|+.|+|++ |.|+.++ .|.++++|++|+|++|+|+++++..|.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35699998 9999999 99999999999996 9999986 699999999999999999999999998999999999999
Q ss_pred CcCCCCCCCCCCCCCCCccEEEeeCCcCCccCC
Q 023443 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (282)
Q Consensus 98 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 130 (282)
|+|+++|+ ..|..++ |+.|+|.+|++.....
T Consensus 90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence 99999997 4666665 9999999999985543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3.2e-16 Score=128.30 Aligned_cols=133 Identities=30% Similarity=0.359 Sum_probs=113.4
Q ss_pred CCCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCC-CCCCCccCeEeccCCcCcccCCCcccCCccccE
Q 023443 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (282)
Q Consensus 14 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 92 (282)
.+..+++|++|++++|.|+.+| .+..+++|++|++++|.|+.+|. +..+++|++|++++|++++++ . +..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~-~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G-IEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H-HHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c-cccCCCCCE
Confidence 5778899999999999999999 88889999999999999999984 566799999999999999986 3 468999999
Q ss_pred EeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccC-------CchHHHHhhCCCCcEecCcc
Q 023443 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP-------NYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 93 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip-------~~~~~~l~~l~~L~~L~ls~ 149 (282)
|++++|.++.++.+..+..+++|++|++++|+++..+ .+....+..+++|+.||...
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~ 183 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP 183 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGG
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcc
Confidence 9999999998764336889999999999999997552 22233588999999998443
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.6e-13 Score=118.62 Aligned_cols=81 Identities=20% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCcc-EEEeeCCcCCccCCchHHHHhhCCC
Q 023443 63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKS 141 (282)
Q Consensus 63 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~ 141 (282)
+++|+.+++++|+++.|++.+|.+|++|+.+++.+| ++.++. .+|.+|++|+ .+.+.+ .++.|+.. +|.+|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCcc
Confidence 456666666666666666666666666666666666 666665 4666666666 666666 56666655 4566666
Q ss_pred CcEecCcc
Q 023443 142 LRVLDFKK 149 (282)
Q Consensus 142 L~~L~ls~ 149 (282)
|+.+++++
T Consensus 299 L~~l~l~~ 306 (329)
T 3sb4_A 299 LRYVLATG 306 (329)
T ss_dssp EEEEEECS
T ss_pred CCEEEeCC
Confidence 66666644
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=4.9e-13 Score=118.36 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=92.2
Q ss_pred cEEeccCC-CccccCCCCCCCccCeEeccC-CcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeC
Q 023443 45 DTIDLSDN-EIVKLENMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122 (282)
Q Consensus 45 ~~L~Ls~N-~l~~i~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 122 (282)
..++.+++ .|+.+|.+..+++|++|+|++ |.|+++++..|.++++|++|+|++|+|+++++ ..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence 45799998 999998899999999999996 99999999988999999999999999999988 5889999999999999
Q ss_pred CcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 123 NSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 123 N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
|+|+.+|.. .+..++ |+.|++++|.+
T Consensus 90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWK---TVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCST---TTCSCC-CCEEECCSSCC
T ss_pred CccceeCHH---HcccCC-ceEEEeeCCCc
Confidence 999999985 344444 99999999654
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.35 E-value=4.3e-13 Score=121.48 Aligned_cols=195 Identities=11% Similarity=0.098 Sum_probs=87.8
Q ss_pred ceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEecc
Q 023443 20 KERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 96 (282)
+|+.+.+.. .++.|+ ..|.+|.+|+.++++.|.++.++ .|. +.+|+.+.+.. .++.|+..+|.+|++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 455555553 455554 44555555555555555555554 333 34555555542 2555555555555555555554
Q ss_pred CCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH-------HHHHhccChhHHHHHhh
Q 023443 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM-------EAASLFASEEMEEEAKK 169 (282)
Q Consensus 97 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~-------~~~~~~~~~~~~~~~~~ 169 (282)
.| ++.+.. .+|.+ .+|+.+.+ .+.++.|+.. +|.+|++|+.+++.++.. .....|.+...+..+..
T Consensus 235 ~~-l~~I~~-~aF~~-~~L~~i~l-p~~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 235 EN-VSTIGQ-EAFRE-SGITTVKL-PNGVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TT-CCEECT-TTTTT-CCCSEEEE-ETTCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred CC-ccCccc-ccccc-CCccEEEe-CCCccEEChh---HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 43 333333 24443 34444444 2334444443 334444444444433211 01111111100000000
Q ss_pred hccccccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCCC
Q 023443 170 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPAD 233 (282)
Q Consensus 170 ~~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~~ 233 (282)
-.....++...+ ..+.+|+.+.+..| ++.|+ .+|.+| +|+.+.+..|.+ ..++..
T Consensus 308 ~~~i~~I~~~aF-----~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~--~~l~~~ 363 (401)
T 4fdw_A 308 PESIRILGQGLL-----GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP--PQVFEK 363 (401)
T ss_dssp CTTCCEECTTTT-----TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC--CBCCCS
T ss_pred CCceEEEhhhhh-----cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC--cccccc
Confidence 000122222222 25667777777543 55554 456677 777777776666 444443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=6.8e-12 Score=113.63 Aligned_cols=209 Identities=10% Similarity=0.053 Sum_probs=149.8
Q ss_pred CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
.+|.++ +|+.+.+..+ ++.|+ ..|.+ .+|+.+.+.. .++.++ .|.+|++|+.+++++|.++.++...|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 357775 7999999877 88888 56766 4799999986 788885 899999999999999999999999995 799
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCccc-HHHHHHhccChhHHHHHh
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKE-RMEAASLFASEEMEEEAK 168 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~-~~~~~~~~~~~~~~~~~~ 168 (282)
|+.+.+..+ ++.++. .+|.++++|+.+.+..| ++.|+... |.+ .+|+.+.+..+ .......|.....+..+.
T Consensus 205 L~~l~lp~~-l~~I~~-~aF~~~~~L~~l~l~~~-l~~I~~~a---F~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGS-QAFLKTSQLKTIEIPEN-VSTIGQEA---FRE-SGITTVKLPNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CSEEECCTT-CCEECT-TTTTTCTTCCCEECCTT-CCEECTTT---TTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred cCEEEeCCc-hheehh-hHhhCCCCCCEEecCCC-ccCccccc---ccc-CCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence 999999854 888887 69999999999999875 78898874 455 68888888652 122223344332211111
Q ss_pred hh-cccc-----ccCCCCCCCcchhhcCCCeeeCCChhHHHHHH-HHhhcccChHHHHHHHHhhhCCCCCCCCCCCCCCC
Q 023443 169 KE-SMKT-----LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS 241 (282)
Q Consensus 169 ~~-~~~~-----~~p~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~l~~~~~L~~L~l~~N~l~~g~iP~~l~~~~~~~ 241 (282)
.- +... .++...+ ..+.+|+.+.+. +.++.|+ .+|..|++|+.+.+..| + ..|+...+......
T Consensus 278 l~~~~~~~~~~~~I~~~aF-----~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~~L~ 348 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCL-----EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNTGIK 348 (401)
T ss_dssp EESSCCCCCTTCEECTTTT-----TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSSCCC
T ss_pred eCCccccCCcccEECHHHh-----hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCCCCC
Confidence 00 0011 1333222 378899999998 4577776 56889999999888544 5 55665554443333
Q ss_pred C
Q 023443 242 G 242 (282)
Q Consensus 242 ~ 242 (282)
.
T Consensus 349 ~ 349 (401)
T 4fdw_A 349 E 349 (401)
T ss_dssp E
T ss_pred E
Confidence 3
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.2e-13 Score=121.18 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=59.5
Q ss_pred ceeEEEecCCcccccc-cc----cc-CCCCCcEEeccCCCcccc--CCC-CCCCccCeEeccCCcCcccCCCcc-----c
Q 023443 20 KERELDLRGNKIAVIE-NL----GA-TEDQFDTIDLSDNEIVKL--ENM-PHLNRLGTLIINNNRITRINPNIG-----E 85 (282)
Q Consensus 20 ~L~~L~Ls~N~l~~ip-~~----~~-~l~~L~~L~Ls~N~l~~i--~~~-~~l~~L~~L~L~~N~l~~~~~~~~-----~ 85 (282)
.|+.|+|++|.|+... .. +. ...+|+.|+|++|.|+.. ..+ ..+++|++|+|++|.|+......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4556666666655322 11 11 124566666666665432 122 233455566666665544322111 1
Q ss_pred CCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccH
Q 023443 86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKER 151 (282)
Q Consensus 86 ~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~ 151 (282)
..++|++|+|++|.|+.... ...+..+++|++|+|++|.|+......+ ..+...++|+.|++++|.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 23455666666665543110 0022344555566666655553211100 133445555555555544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=6.1e-12 Score=112.82 Aligned_cols=136 Identities=16% Similarity=0.082 Sum_probs=101.7
Q ss_pred CCceeEEEecCCcccc--ccccccCCCCCcEEeccCCCccccC--CC-----CCCCccCeEeccCCcCcccCC----Ccc
Q 023443 18 AIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKLE--NM-----PHLNRLGTLIINNNRITRINP----NIG 84 (282)
Q Consensus 18 l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~i~--~~-----~~l~~L~~L~L~~N~l~~~~~----~~~ 84 (282)
.++|++|+|++|.|+. +......+++|+.|+|++|.|+..+ .+ ...++|++|+|++|.|+.... ..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4689999999999973 3344445779999999999998642 22 356889999999999986322 222
Q ss_pred cCCccccEEeccCCcCCCCCC---CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHHH
Q 023443 85 EFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERME 153 (282)
Q Consensus 85 ~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~~ 153 (282)
..+++|++|+|++|.|+.... ...+...++|+.|+|++|.|+......+ ..+...++|++|++++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 468899999999999875320 0245667899999999999985433211 14667899999999998653
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.08 E-value=1.1e-11 Score=116.95 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=101.5
Q ss_pred CCCceeEEEecCCcccc-----ccccccCCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccCCCccc
Q 023443 17 NAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRINPNIGE 85 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~~~~~~ 85 (282)
++++|++|+|++|.++. ++..+..+++|+.|++++|.++.+ + .+.++++|++|++++|.+.+++ ..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence 45566666666665542 223334556666666666666522 1 2345566666666666666654 3334
Q ss_pred CCccccEEeccCCcCC-C-CCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHh---ccC
Q 023443 86 FLPKLHTLVLTNNRLV-N-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASL---FAS 160 (282)
Q Consensus 86 ~l~~L~~L~L~~N~l~-~-~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~---~~~ 160 (282)
.+++|+.|+++..... . .+....+..+++|+.++++++....+|. .+..+++|++|+++++......+ +..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 5566666666532211 0 0111244556666666666655555555 45667777777777754322211 111
Q ss_pred hhHHHHHhhhccccccC-CCCCCCcchhhcCCCeeeCCC-----------hhHHH--HHHHHhhcccChHHHHHHHHhh
Q 023443 161 EEMEEEAKKESMKTLMP-VEVPNVSEEEEQQTPKVVAPT-----------PEQII--AIKAAIVNSQTLEEVARLEKVL 225 (282)
Q Consensus 161 ~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l~~L~~L~Ls-----------~N~l~--~ip~~l~~~~~L~~L~l~~N~l 225 (282)
... +..+.....+. ..+. .....+++|+.|+++ .|.++ .++..+..|++|++|++..|.+
T Consensus 317 ~~~---L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 317 CPN---LEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp CTT---CCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred CcC---CCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 000 00000000000 0000 000246678888888 46666 3555566788888888866666
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=7.1e-12 Score=118.34 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=131.2
Q ss_pred CCCCceeEEEecCCccc-----cccccccCCCCCcEEeccCCCccccC-CCCCCCccCeEeccCCcCcc---cCCCcccC
Q 023443 16 FNAIKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITR---INPNIGEF 86 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~L~~N~l~~---~~~~~~~~ 86 (282)
.++++|++|++++|.++ .++..+..+++|+.|++++|.+.+++ .+..+++|+.|++++..... .....+..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 35789999999999986 45556678999999999999998886 66788899999997543221 11123346
Q ss_pred CccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHHHHHHhccChhHHHH
Q 023443 87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERMEAASLFASEEMEEE 166 (282)
Q Consensus 87 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~~ 166 (282)
+++|+.|+++++....++. .+..+++|++|++++|.++..... ..+..+++|+.|+++++ .....+.........
T Consensus 269 ~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~--~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHC--TLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHH--HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred cccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHH--HHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCC
Confidence 7888888888876666665 677788899999998886532110 14678888888888842 211111000000000
Q ss_pred Hhhhcccc--ccC------CCCCC--Ccc-hhhcCCCeeeCCChhHHH-HHHHHhhc-ccChHHHHHH----HHhh
Q 023443 167 AKKESMKT--LMP------VEVPN--VSE-EEEQQTPKVVAPTPEQII-AIKAAIVN-SQTLEEVARL----EKVL 225 (282)
Q Consensus 167 ~~~~~~~~--~~p------~~~~~--~~~-~~~l~~L~~L~Ls~N~l~-~ip~~l~~-~~~L~~L~l~----~N~l 225 (282)
+..+.... ..| ..+.+ +.. ...+++|+.|+++.|+++ ..+..++. +++|+.|+++ .|.+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 11111110 000 01110 001 135789999999999988 56667765 9999999985 5666
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.97 E-value=3.5e-12 Score=120.40 Aligned_cols=199 Identities=11% Similarity=0.084 Sum_probs=124.3
Q ss_pred CCCceeEEEecCCcccc-cccccc-CCCCCcEEeccCC-Cccc--cCCC-CCCCccCeEeccCCcCcccCCC----cccC
Q 023443 17 NAIKERELDLRGNKIAV-IENLGA-TEDQFDTIDLSDN-EIVK--LENM-PHLNRLGTLIINNNRITRINPN----IGEF 86 (282)
Q Consensus 17 ~l~~L~~L~Ls~N~l~~-ip~~~~-~l~~L~~L~Ls~N-~l~~--i~~~-~~l~~L~~L~L~~N~l~~~~~~----~~~~ 86 (282)
.+++|++|+|++|.++. .+..+. .+++|++|+|++| .++. ++.+ .++++|++|++++|.+++.... ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57899999999999883 334443 6899999999999 5665 4433 4789999999999998764432 2346
Q ss_pred CccccEEeccCCcCCCCCC--C-CCCCCCCCccEEEeeCC-cCCccCCchHHHHhhCCCCcEecCcccHH--HHHHhccC
Q 023443 87 LPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKERM--EAASLFAS 160 (282)
Q Consensus 87 l~~L~~L~L~~N~l~~~~~--~-~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~ls~~~~--~~~~~~~~ 160 (282)
+++|++|++++|. ..+.. + ..+..+++|+.|++++| .+..++. .+..+++|+.|+++.... ... .+..
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 256 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELGTGGYTAEVRPD-VYSG 256 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEECSBCCCCCCHH-HHHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcccccccCccchh-hHHH
Confidence 7899999999997 22221 0 01235799999999998 4555555 688999999999765211 000 0000
Q ss_pred hhHHHHHhhhcccccc---CC-CCCCCcch-hhcCCCeeeCCChhHHH--HHHHHhhcccChHHHHHHHH
Q 023443 161 EEMEEEAKKESMKTLM---PV-EVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEK 223 (282)
Q Consensus 161 ~~~~~~~~~~~~~~~~---p~-~~~~~~~~-~~l~~L~~L~Ls~N~l~--~ip~~l~~~~~L~~L~l~~N 223 (282)
... .+........+ .. ....++.. ..+++|+.|++++|.++ .++..+.++++|++|++.+|
T Consensus 257 l~~--~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 257 LSV--ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHH--HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHH--HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 000 00000000000 00 00000111 25678888888888866 24455677888887777665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.89 E-value=1.1e-10 Score=110.16 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCCCceeEEEecCCcc-ccc---c------------ccccCCCCCcEEeccCCCcccc--CCCC-CCCccCeEeccCC-c
Q 023443 16 FNAIKERELDLRGNKI-AVI---E------------NLGATEDQFDTIDLSDNEIVKL--ENMP-HLNRLGTLIINNN-R 75 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l-~~i---p------------~~~~~l~~L~~L~Ls~N~l~~i--~~~~-~l~~L~~L~L~~N-~ 75 (282)
..+++|+.|+++++.. ..+ | .....+++|+.|+|++|.++.. ..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3567899999999862 221 1 1234688999999999998764 2443 6889999999999 5
Q ss_pred Cccc-CCCcccCCccccEEeccCCcCCCCCC--C-CCCCCCCCccEEEeeCCcCCccCCchHH-HHhhCCCCcEecCccc
Q 023443 76 ITRI-NPNIGEFLPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKKE 150 (282)
Q Consensus 76 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~ls~~ 150 (282)
++.. .+.++.++++|++|++++|.+++... + .....+++|+.|++++|. ..+....+. .+..+++|++|+++++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6552 23444579999999999999876432 0 123477899999999997 334333221 3466899999999986
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=1.2e-08 Score=86.92 Aligned_cols=102 Identities=28% Similarity=0.310 Sum_probs=77.4
Q ss_pred EeccCCCccccC-----CCCCCCccCeEeccCCcCcccCC--CcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEE
Q 023443 47 IDLSDNEIVKLE-----NMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (282)
Q Consensus 47 L~Ls~N~l~~i~-----~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 119 (282)
++++.|....++ ...++++|+.|+|++|+|+++++ ..+..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 566777655443 12467899999999999998753 5556899999999999999988654455555 899999
Q ss_pred eeCCcCCc-cC---CchHHHHhhCCCCcEecCcc
Q 023443 120 LLDNSITK-KP---NYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 120 L~~N~l~~-ip---~~~~~~l~~l~~L~~L~ls~ 149 (282)
|++|+++. +| .++...+..+++|+.||-..
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 99999984 54 33334688999999998654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=3.6e-09 Score=85.31 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=84.4
Q ss_pred ccccccCCCCCcEEeccCC-Ccccc------CCCCCCCccCeEeccCCcCcccC----CCcccCCccccEEeccCCcCCC
Q 023443 34 IENLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRIN----PNIGEFLPKLHTLVLTNNRLVN 102 (282)
Q Consensus 34 ip~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 102 (282)
+...+...++|++|+|++| .|..- ..+...++|++|+|++|.|..-. ...+...++|++|+|++|.|+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445566788888888888 77642 14566788888899888887521 1222355789999999998875
Q ss_pred -----CCCCCCCCCCCCccEEEe--eCCcCCccCCch-HHHHhhCCCCcEecCcccHHHHHH
Q 023443 103 -----LVEIDPLTSLPKLQFLSL--LDNSITKKPNYR-LYVIHKLKSLRVLDFKKERMEAAS 156 (282)
Q Consensus 103 -----~~~~~~~~~l~~L~~L~L--~~N~l~~ip~~~-~~~l~~l~~L~~L~ls~~~~~~~~ 156 (282)
+.. .+...+.|++|+| ++|.|..-.... ...+...++|+.|++++|.+....
T Consensus 108 ~g~~~l~~--~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 108 SGILALVE--ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHH--GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHH--HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 232 5667788999999 889988422111 115677899999999998775543
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.2e-08 Score=82.20 Aligned_cols=112 Identities=16% Similarity=0.045 Sum_probs=85.7
Q ss_pred CCCCCceeEEEecCC-ccc-----cccccccCCCCCcEEeccCCCcccc-----C-CCCCCCccCeEeccCCcCcccC--
Q 023443 15 FFNAIKERELDLRGN-KIA-----VIENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN-- 80 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~L~~N~l~~~~-- 80 (282)
+...+.|++|+|++| .|. .+...+...++|++|+|++|.|..- . .+...+.|++|+|++|.|....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456788999999999 887 2455666788999999999999852 1 4556688999999999998731
Q ss_pred --CCcccCCccccEEec--cCCcCCCCCC---CCCCCCCCCccEEEeeCCcCC
Q 023443 81 --PNIGEFLPKLHTLVL--TNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 81 --~~~~~~l~~L~~L~L--~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~ 126 (282)
...+...++|++|+| ++|.|+.-.. ...+...+.|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 223346778999999 8899975211 014556688999999999886
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=3.4e-08 Score=87.97 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=15.8
Q ss_pred cCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcC
Q 023443 39 ATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI 76 (282)
Q Consensus 39 ~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l 76 (282)
..+++|+.|.|++|.-..++.+. +++|+.|++..+.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGL 205 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBC
T ss_pred hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCC
Confidence 34455555555544211222222 44555555554444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=4.1e-07 Score=81.07 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=102.0
Q ss_pred CCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcc
Q 023443 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (282)
Q Consensus 13 ~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 89 (282)
..+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.++ .|.++.+|+.+.+.. .+..++..+|.+|.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 45667778888888654 56665 67778888999888776 67674 678888899888854 477888888888999
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 90 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
|+.+.+.++.++.++. ..|.+|.+|+.+.+..+ ++.|+.. +|.++++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCT
T ss_pred cccccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECC
Confidence 9999998888888877 58889999999988754 7888877 567888888888865
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=7.1e-07 Score=79.54 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=48.5
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCcccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 91 (282)
|.++..|+.+.+..+ ++.|. ..|..+.+|+.+.+..+ ++.++ .|.++++|+.+.+.++.++.|+..+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344444444444433 33443 33444444444444322 33332 344444444444444444444444444444444
Q ss_pred EEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCc
Q 023443 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131 (282)
Q Consensus 92 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~ 131 (282)
.+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|...
T Consensus 314 ~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 314 SVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp EEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh
Confidence 4444322 333333 24444444444444332 4444433
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=7.2e-08 Score=82.10 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCCCCceeE--EEecCCccccccccc----cCCCCCcEEeccCCCccccCCC----CCCCccCeEeccCCcCcccCCCcc
Q 023443 15 FFNAIKERE--LDLRGNKIAVIENLG----ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNNRITRINPNIG 84 (282)
Q Consensus 15 ~~~l~~L~~--L~Ls~N~l~~ip~~~----~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~L~~N~l~~~~~~~~ 84 (282)
|...+.|+. ++++.|....++..+ ..+++|+.|+|++|.|++++.+ ..+++|+.|+|++|+|+++.. +
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l- 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L- 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-h-
Confidence 444555665 778888766555322 4688999999999999987543 478999999999999998732 2
Q ss_pred cCCc--cccEEeccCCcCCC-CCCC-----CCCCCCCCccEEE
Q 023443 85 EFLP--KLHTLVLTNNRLVN-LVEI-----DPLTSLPKLQFLS 119 (282)
Q Consensus 85 ~~l~--~L~~L~L~~N~l~~-~~~~-----~~~~~l~~L~~L~ 119 (282)
..+. +|+.|+|++|.+++ ++.. ..+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 2333 89999999999875 2210 1355778888876
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=1.9e-06 Score=77.32 Aligned_cols=109 Identities=12% Similarity=0.253 Sum_probs=90.9
Q ss_pred ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCC
Q 023443 36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP 113 (282)
Q Consensus 36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 113 (282)
..|..+..|+.+.+..+.. .++ .|.+++.|+.+.+. +.++.++..+|.+|.+|+.+.+..+ ++.+.. .+|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCC
Confidence 4567788999999876543 453 78899999999996 6788999999999999999999765 777776 6899999
Q ss_pred CccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcccHH
Q 023443 114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~~~~ 152 (282)
+|+.+.+..+ ++.|+.. +|.+|++|+.+++.++..
T Consensus 335 ~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCHH
T ss_pred CCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCcee
Confidence 9999999754 8899887 678999999999988654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=1.2e-06 Score=78.62 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=98.3
Q ss_pred CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
..+|.++..|+.+.+..+. ..|. ..|.++.+|+.+.+. +.++.++ .|.++.+|+.+.+..+ ++.|...+|.+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3468899999999997654 4555 788899999999996 5678886 7999999999999764 8899999999999
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
+|+.+.+..+ ++.+.. .+|.+|++|+.+.+.++... +. .+..+..|+.+.+..
T Consensus 335 ~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~-~~-----~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQ-WN-----AISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHH-HH-----TCBCCCCC-------
T ss_pred CCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceee-hh-----hhhccCCCCEEEeCC
Confidence 9999999654 888877 69999999999999987543 11 345677788777654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=2e-06 Score=77.18 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=83.0
Q ss_pred CCCCCceeEEEecCCccccccccccCCCCCcEEeccCCCccccCCCCCCCccCeEeccCCcCcccCCCcccCCccccEEe
Q 023443 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 94 (282)
|.++..|+.+.+..+...--...|..+..++.+.+..+.+. -..|..+.+|+.+.+..+ ++.|+..+|.+|.+|+.++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 34444444444444322211134444555555444433211 015667788888888654 7788888888888888888
Q ss_pred ccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEecCcc
Q 023443 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (282)
Q Consensus 95 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ls~ 149 (282)
+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|+.. +|.++++|+.+++..
T Consensus 327 lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 327 LPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPK 375 (394)
T ss_dssp CCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEG
T ss_pred eCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECC
Confidence 8644 777766 58888888988888776 7888776 567888888888765
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.6e-06 Score=77.73 Aligned_cols=122 Identities=8% Similarity=0.063 Sum_probs=99.8
Q ss_pred CCCCCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCCccccC--CCCCCCccCeEeccCCcCcccCCCcccCCc
Q 023443 12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (282)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 88 (282)
...|.++..++.+.+..+. ++ ..|..+.+|+.+.+..+ ++.++ +|.++++|+.+.+.. .++.|+..+|.+|.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCT
T ss_pred ccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCC
Confidence 3457788888888887654 44 56778999999999765 77775 799999999999975 48999999999999
Q ss_pred cccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCCccCCchHHHHhhCCCCcEe
Q 023443 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL 145 (282)
Q Consensus 89 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L 145 (282)
+|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.+.. .|.++++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYRY----DFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGGG----GBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhhh----eecCCCCCcEE
Confidence 9999999877 888877 69999999999999764 555543 57888888765
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=9.5e-08 Score=85.10 Aligned_cols=135 Identities=16% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCCCceeEEEecCCccccccccccCCCCCcEEeccCCCcccc--CCC--CCCCccCeEeccC--Cc------CcccCCCc
Q 023443 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL--ENM--PHLNRLGTLIINN--NR------ITRINPNI 83 (282)
Q Consensus 16 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~i--~~~--~~l~~L~~L~L~~--N~------l~~~~~~~ 83 (282)
..+++|+.|+|++|.-..++. +. +++|+.|+|..+.++.- ..+ ..+++|+.|+|+. |. +..+.+.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 456889999999884224454 33 88999999999988642 233 3688999999863 22 21222211
Q ss_pred c-cCCccccEEeccCCcCCCCCC--CCCCCCCCCccEEEeeCCcCCccCCchH-HHHhhCCCCcEecCcccHH
Q 023443 84 G-EFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKERM 152 (282)
Q Consensus 84 ~-~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~ls~~~~ 152 (282)
. ..+++|++|+|++|.++.... +.....+++|+.|+|+.|.+.......+ ..+..+++|+.|++++|.+
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 1 257899999999998864111 0011347899999999999885211110 0346789999999998754
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.7e-06 Score=67.59 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=57.5
Q ss_pred ccccccCCCCCcEEeccCCCcccc--CCCCCCCccCeEeccCCc-CcccCCCcccC----CccccEEeccCCc-CCCCCC
Q 023443 34 IENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNR-ITRINPNIGEF----LPKLHTLVLTNNR-LVNLVE 105 (282)
Q Consensus 34 ip~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----l~~L~~L~L~~N~-l~~~~~ 105 (282)
+|.....-..|+.||++++.|+.. ..+..+++|++|+|++|. |+.-.-..... +++|++|++++|. |+.-.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G- 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG- 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence 443332234688888888887753 356778888888888874 65521111122 2468888888874 66422
Q ss_pred CCCCCCCCCccEEEeeCCc-CC
Q 023443 106 IDPLTSLPKLQFLSLLDNS-IT 126 (282)
Q Consensus 106 ~~~~~~l~~L~~L~L~~N~-l~ 126 (282)
+..+.++++|+.|++++++ ++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 1245667888888888875 44
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=8.3e-06 Score=64.79 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCCCCceeEEEecCCcccccc-ccccCCCCCcEEeccCCC-cccc--CCCCCC----CccCeEeccCC-cCcccCCCccc
Q 023443 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKL--ENMPHL----NRLGTLIINNN-RITRINPNIGE 85 (282)
Q Consensus 15 ~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~l----~~L~~L~L~~N-~l~~~~~~~~~ 85 (282)
...-.+|+.||++++.|+..- ..+..+++|+.|+|++|. |+.- ..+..+ ++|++|+|++| +|+.-.-....
T Consensus 57 ~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp STTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred cCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 334457999999999988433 445789999999999996 7753 344443 58999999998 48763223345
Q ss_pred CCccccEEeccCCc-CCC
Q 023443 86 FLPKLHTLVLTNNR-LVN 102 (282)
Q Consensus 86 ~l~~L~~L~L~~N~-l~~ 102 (282)
.+++|++|+++++. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 78999999999985 554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.79 E-value=3.7e-05 Score=58.03 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=30.1
Q ss_pred eEeccCCcCc--ccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEeeCCcCC
Q 023443 68 TLIINNNRIT--RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 68 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 126 (282)
.++.+++.++ .+|..+. ++|++|+|++|+|+.++. ..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 4555555555 5544322 245556666666666555 45555566666666666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.65 E-value=7.1e-05 Score=56.43 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=35.4
Q ss_pred EEeccCCCcc--ccC-CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCCcCC
Q 023443 46 TIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101 (282)
Q Consensus 46 ~L~Ls~N~l~--~i~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 101 (282)
.++-+++.++ .+| .+. .+|++|+|++|+|+.++++.|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 666 333 35667777777777777766666677777777776554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00018 Score=58.06 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=77.3
Q ss_pred cccCCCCCcEEeccCC-Ccccc------CCCCCCCccCeEeccCCcCcccCC----CcccCCccccEEeccCCcCCCCCC
Q 023443 37 LGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE 105 (282)
Q Consensus 37 ~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~ 105 (282)
.+..-+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|..... .++..-+.|++|+|++|.|+.-..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445678999999885 77632 246667889999999999886322 222345689999999999875211
Q ss_pred ---CCCCCCCCCccEEEeeCCcCCccCCc----hHHHHhhCCCCcEecCcccHHH
Q 023443 106 ---IDPLTSLPKLQFLSLLDNSITKKPNY----RLYVIHKLKSLRVLDFKKERME 153 (282)
Q Consensus 106 ---~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~l~~l~~L~~L~ls~~~~~ 153 (282)
...+..-+.|+.|+|++|....+... .-..+..-+.|+.|+++.+...
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 01455566799999987643222221 1125677789999999886543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=5.7e-05 Score=61.05 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=76.9
Q ss_pred CCCceeEEEecCC-ccc-----cccccccCCCCCcEEeccCCCccccC------CCCCCCccCeEeccCCcCcccCC---
Q 023443 17 NAIKERELDLRGN-KIA-----VIENLGATEDQFDTIDLSDNEIVKLE------NMPHLNRLGTLIINNNRITRINP--- 81 (282)
Q Consensus 17 ~l~~L~~L~Ls~N-~l~-----~ip~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l~~L~~L~L~~N~l~~~~~--- 81 (282)
+-+.|+.|+|++| +|. .|-..+..-..|+.|+|++|.|.... .+..-+.|++|+|++|.|..-..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567999999986 886 24455666789999999999998542 34566889999999999986321
Q ss_pred -CcccCCccccEEeccCCcCCCCCC------CCCCCCCCCccEEEeeCCcCC
Q 023443 82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNSIT 126 (282)
Q Consensus 82 -~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~l~ 126 (282)
.....-+.|+.|+|++|....+.. ...+..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 222345679999998764311111 013445578999999877543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.84 E-value=1.6 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=19.7
Q ss_pred CcccCCCcccCCccccEEeccCCcCCCCCCCCCCCCCCCccEEEee
Q 023443 76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121 (282)
Q Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 121 (282)
++.|....|.+|.+|+.+.+-.+ ++.+.. .+|.+|.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEc
Confidence 34444444444445544444432 333333 244455555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.25 E-value=2 Score=30.13 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=31.6
Q ss_pred CccccC--CCCCCCccCeEeccCCcCcccCCCcccCCccccEEeccCC
Q 023443 53 EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (282)
Q Consensus 53 ~l~~i~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (282)
.++.|. .|.++++|+.+.+-.+ ++.|....|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455564 6777777777777653 66777777777888887777654
Done!