BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023444
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 151/280 (53%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 151/280 (53%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 187 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 246
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 247 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 306
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 307 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 331
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 332 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 379
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 380 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 418
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 377 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 415
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 222
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 223 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 282
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 283 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 307
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 308 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 355
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 356 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 394
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 377 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 415
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 183 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 242
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 243 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 302
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 303 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 327
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 328 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 375
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 376 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 414
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 162 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 221
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 222 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 281
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 282 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 306
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 307 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 354
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 355 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 393
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 222
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 223 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 282
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 283 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 307
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 308 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 355
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 356 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 394
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 163 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 222
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 223 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 282
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 283 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 307
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 308 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 355
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 356 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 394
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/280 (43%), Positives = 152/280 (54%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 377 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 415
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 151/280 (53%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTC+CLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 151/280 (53%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
Q G+ LL R G+ +
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTC+CLSGLSI QH
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 133/274 (48%), Gaps = 70/274 (25%)
Query: 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIA---- 57
K P G F + + GE+DVR Y + VA++L+I+ ELL NV ++ +CQTYEGG A
Sbjct: 180 KRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASF 239
Query: 58 --------------GEPG-----SEAHGGYTFCGLAAMILINEAD------RLDLDALIG 92
EP +EAHGGYT C L + L+ +D +A +
Sbjct: 240 PFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALR 299
Query: 93 WVVFRQG--VE-GGFQGRTNKLVDGCYSFWQGG----VFALLRRFHS-IIGESPTPVDQR 144
W V +QG +E GGF+GRTNKLVDGCYS+W GG L+RR S + +S V +
Sbjct: 300 WTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEE 359
Query: 145 GAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS- 203
E ++ P+F+ +ALQ + L+ +
Sbjct: 360 EKEGDWEDVPPI------------------------------PPIFNRVALQEFTLVAAQ 389
Query: 204 QDP--RGGLRDKLRKPRDYYHTCYCLSGLSICQH 235
QDP GGLRDK K D YHTC LSGLSI QH
Sbjct: 390 QDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH 423
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 125 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 184
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 185 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 244
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 245 LASLKIIGRLHWI 257
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 50 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 109
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 133
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 110 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI 161
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 193 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 249
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 250 IIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 300
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 246 LASLKIIGRLHWI 258
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 110
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 133
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI 162
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 194 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 250
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 251 IIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ E D+R Y A + +LN ++ +YI +Y+ G+A G E+HGG TFC
Sbjct: 166 EGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225
Query: 72 GLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
G+A++ L+ + + + +L+ + W + RQ + G+ GR NK VD CYSFW G LL
Sbjct: 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 128 RRFH 131
+ F
Sbjct: 284 KIFQ 287
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 3 DPSGAFRMHDAGEIDVRACYTAISVASILNILD-------------DELLQNVGNYILSC 49
+ +G ++ + GE D+R CY A+ + ++ D D L ++ +IL
Sbjct: 146 EENGDYKQY--GEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDR 203
Query: 50 QTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ----------- 98
GG + E+H G+TFC +A++ L+N L + W++ RQ
Sbjct: 204 ININGGFSSTIMDESHLGFTFCAIASLKLLNYPLE-KLKSTKEWLIHRQVDYPENLYPKD 262
Query: 99 ----------------GVE-GGFQGRTNKLVDGCYSFWQGG 122
++ GGF GR NKL D CYS+W G
Sbjct: 263 GNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTG 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,656,782
Number of Sequences: 62578
Number of extensions: 355112
Number of successful extensions: 626
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 68
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)