BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023444
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/301 (64%), Positives = 223/301 (74%), Gaps = 31/301 (10%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
MK P+G FRMHD GEIDVRACYTAISVAS+LNILDDEL++NVG++ILSCQTYEGG+AGEP
Sbjct: 129 MKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEP 188
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSEAHGGYTFCGLAAMILI E +RLDL L+ WVVFRQG E GFQGRTNKLVDGCYSFWQ
Sbjct: 189 GSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQ 248
Query: 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCH 180
GG ALL+R HSII D++ AE S Q T SD E D SS H
Sbjct: 249 GGAVALLQRLHSII-------DEQMAEAS----QFVTVSDAPEEKECLDGTSSHATSHIR 297
Query: 181 F--------------------QHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDY 220
+ R+ EPLFHSIALQ+Y+LLCSQ+ GGLRDK K RD+
Sbjct: 298 HEGMNESCSSDVKNIGYNFISEWRQSEPLFHSIALQQYILLCSQEQDGGLRDKPGKRRDH 357
Query: 221 YHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 280
YH+CYCLSGLS+CQ+SW K DS PLP+ V+GPYSN+LEP+HP+FN+VLDRY EAHEFFS
Sbjct: 358 YHSCYCLSGLSLCQYSWSKRPDSPPLPKVVMGPYSNLLEPIHPLFNVVLDRYREAHEFFS 417
Query: 281 R 281
+
Sbjct: 418 Q 418
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 21 CYTAI-SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79
CY I S+A + +DD+L N +++ CQ GG AG PG H T+ + +I +
Sbjct: 49 CYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITL 108
Query: 80 NEADRL---DLDALIGWVVFRQGVEGGFQGRTNKLVD--GCYS 117
L + + L G++ + GGF+ +D CY+
Sbjct: 109 GGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYT 151
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 341 bits (874), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 176/290 (60%), Positives = 211/290 (72%), Gaps = 8/290 (2%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
MKD SG FRMHD GE+DVRACYTAISVASILNI+DDEL Q +G+YILSCQTYEGGI GEP
Sbjct: 192 MKDTSGGFRMHDMGEMDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEP 251
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V RQGVE GFQGRTNKLVDGCY+FWQ
Sbjct: 252 GSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQ 311
Query: 121 GGVFALLRRF-----HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQG 175
LL+R H + G S + D + D + D +DE S G
Sbjct: 312 AAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNG 371
Query: 176 DEHCH---FQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 232
H + +R + +F S+ LQRY+LLCS+ P GG RDK RKPRD+YHTCYCLSGLS+
Sbjct: 372 HRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSV 431
Query: 233 CQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 282
QH+WLKDED+ PL R ++G YSN+LEPV + NIV+D+Y+EA EFF ++
Sbjct: 432 AQHAWLKDEDTPPLTRDIMGGYSNLLEPVQLLHNIVMDQYNEAIEFFFKA 481
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 154/280 (55%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
Q G+ LL R + +QGD
Sbjct: 304 QAGLLPLLHR----------------------------------------ALHAQGDPAL 323
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
H +FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 324 SMSHW----MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 155/280 (55%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
Q G+ LL R + +QGD
Sbjct: 304 QAGLLPLLHR----------------------------------------ALHAQGDPAL 323
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
H +FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 324 SMSHW----MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI D+ +A F
Sbjct: 377 -GSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHF 415
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 224 bits (571), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 154/280 (55%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MHD GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHDGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
Q G+ LL R + +QGD
Sbjct: 304 QAGLLPLLHR----------------------------------------ALHAQGDPAL 323
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
+FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 324 SMSRW----MFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L VLG N L+P HPV+NI D+ +A F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATMHF 415
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/280 (43%), Positives = 155/280 (55%), Gaps = 49/280 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+K P G+F MH GE+DVR+ Y A SVAS+ NI+ +L + +I CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
G EAHGGYTFCGLAA++++ + L+L +L+ WV RQ EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
Q G+ LL R + +QGD
Sbjct: 304 QAGLLPLLHR----------------------------------------ALHAQGDPAL 323
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
H +FH ALQ Y+L+C Q P GGL DK K RD+YHTCYCLSGLSI QH
Sbjct: 324 SMSHW----MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
+ L V+G NVL+P HPV+NI ++ +A F
Sbjct: 377 -GSGAMLHDMVMGVPENVLQPTHPVYNIGPEKVIQATTHF 415
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 148/271 (54%), Gaps = 47/271 (17%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
MK GAF D GE D R Y AI+VAS+LNIL EL + V +++LSCQTYEGG P
Sbjct: 182 MKTKEGAFTSEDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYP 241
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
+EAHGGYTFC +AA+ ++N ++D+++L W+ +RQ +GGF+GRTNKLVD CYS+WQ
Sbjct: 242 FNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQ 301
Query: 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCH 180
G V+ +++ + + + +GDG +GD+
Sbjct: 302 GAVYIIIQSYFNYYKKQQQ----------------------DDGDG------KEGDQ--- 330
Query: 181 FQHREREPLFHSIALQRYLL-LCSQDPR--GGLRDKLRKPRDYYHTCYCLSGLSICQHSW 237
+E LF+ LQ Y++ C Q + G D + +DYYHTCY LSG+S+ Q+
Sbjct: 331 ---QEEGLLFNQAKLQEYVIRFCQQSDKKYSGFSDHPHRGKDYYHTCYGLSGISLSQY-- 385
Query: 238 LKDEDSSPLPRAV--LGPYSNVLEPVHPVFN 266
+ + +A+ L ++N E P N
Sbjct: 386 ------NEIGKAIQSLNTFTNTFEQPSPPIN 410
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 145/289 (50%), Gaps = 65/289 (22%)
Query: 1 MKDPSGAFRM-HDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGE 59
+K+P+G F+ + GE+D R Y A+S+A++LNIL +EL + V NY+ +CQ YEGG
Sbjct: 192 LKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSC 251
Query: 60 PG-SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYS 117
P EAHGGYTFC A++ ++ D+++++ L+ W RQ E GF GR+NKLVDGCYS
Sbjct: 252 PHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYS 311
Query: 118 FWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDE 177
FW GG A+L F G
Sbjct: 312 FWVGGSAAILEAF--------------------------------------------GYG 327
Query: 178 HCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236
C +H AL+ Y+L C Q+ + GLRDK D+YHT YCL GL++ + S
Sbjct: 328 QCFNKH----------ALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAESS 377
Query: 237 WLKDEDSSP-----LPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 280
+ + SP P ++G S+ L V+PV+ + ++ + +F
Sbjct: 378 YSCTPNDSPHNIKCTPDRLIG--SSKLTDVNPVYGLPIENVRKIIHYFK 424
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 122/234 (52%), Gaps = 50/234 (21%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE 59
+K+P G+FR+++ GE D R+ Y A+ V+S++ I +DD L + ++ CQTYEGG++G
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGV 198
Query: 60 PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSF 118
P +EAHGGYTFC LAA+ L+ D L+ L W+V RQ GF GR+NKLVDGCYS+
Sbjct: 199 PYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYSW 258
Query: 119 WQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEH 178
W G + V+ G GS+
Sbjct: 259 WVGASHVI----------------------------------VASGYGSA---------- 274
Query: 179 CHFQHREREPLFHSI-ALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLS 231
H+ LF++ L Y+L C Q GGLRDK K D YHTCYCL GLS
Sbjct: 275 ---SHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDKPPKRPDQYHTCYCLLGLS 325
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 4 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 63
P G+F+ GE+D R YTA+S S+LN L D + +I+ C ++GG PGSE
Sbjct: 135 PDGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSE 194
Query: 64 AHGGYTFCGLAAMILINEADRLDLD----ALIGWVVFRQGV-EGGFQGRTNKLVDGCYSF 118
+H F + A+ ++N+ D LD++ LI W+ RQ + GGF GR KL D CYS+
Sbjct: 195 SHAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSW 254
Query: 119 WQGGVFALLRR 129
W ++L+R
Sbjct: 255 WVLSSLSILKR 265
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 LQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236
L+ ++L C GG D+ D YHTC+ ++GLS+ +
Sbjct: 274 LENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLIDYK 315
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 4 PSGAFRMHDAGEIDVRACYTAISVASIL---NILDDELLQNVGNYILSCQTYE-GGIAGE 59
PSG F DV + +S SIL N +D ++L+N +IL+CQ E GG +
Sbjct: 236 PSGGFNGRPEKLPDVCYSWWVLSSLSILKRKNWVDLKILEN---FILTCQDLENGGFSDR 292
Query: 60 PGSEAHGGYTFCGLAAMILIN 80
PG++ +T +A + LI+
Sbjct: 293 PGNQTDVYHTCFAIAGLSLID 313
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GE+D R Y AI S+L LD + YILSCQ ++GG P
Sbjct: 130 LQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIP 189
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
G+E+H G F + A+ ++NE +++D+D L W+ RQ GG GR K D CYS+W
Sbjct: 190 GAESHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWV 249
Query: 121 GGVFALLRRFHSI 133
+ + R H I
Sbjct: 250 LSALSAIDRLHWI 262
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 105/249 (42%), Gaps = 13/249 (5%)
Query: 5 SGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEA 64
+G F + + + + + +A+ + + LD + +V +Y++ Q +G G+ E
Sbjct: 86 NGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGDQWGEV 145
Query: 65 HGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 124
+++ + + L+ D+++ + + +++ Q +GGF F G
Sbjct: 146 DTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGAL 205
Query: 125 ALLRRFHSI-IGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH 183
++L + I I + + +R N + +SDV +S+ + H+
Sbjct: 206 SILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAI--DRLHWID 263
Query: 184 REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDS 243
++ L+ Y+L C + GG+ DK D +HT + + GLS+ + KD+
Sbjct: 264 NDK--------LKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGY--FKDQIE 313
Query: 244 SPLPRAVLG 252
S P LG
Sbjct: 314 SIDPVYALG 322
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 36 DELLQN-VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWV 94
D+L +N V ++LSCQ GG G + H T + +I + D++D+++++ +V
Sbjct: 68 DKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYV 127
Query: 95 VFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 133
V Q +G F G VD +S+ +LL+ I
Sbjct: 128 VKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKI 166
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 13 AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 72
AG+I +T + SILN ++ + +G ++ Q GG+ G P + Y++
Sbjct: 195 AGQI-----FTCVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWV 249
Query: 73 LAAMILINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALLRRFH 131
L+A+ I+ +D D L +++ Q E GG + + D ++F+ +L+ F
Sbjct: 250 LSALSAIDRLHWIDNDKLKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFK 309
Query: 132 SIIGESPTPVDQRGAE 147
I ES PV G +
Sbjct: 310 DQI-ESIDPVYALGTK 324
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 6 GAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAH 65
G+F+ GE+D R YTA+S SIL L E++ +++L C ++GG P +E+H
Sbjct: 124 GSFQGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESH 183
Query: 66 GGYTFCGLAAMILINEADRLDLDAL--IG-WVVFRQGVEGGFQGRTNKLVDGCYSFWQGG 122
F L A+ + N+ D L D L IG W+ RQ EGG GR +KL D CYS+W
Sbjct: 184 AAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLS 243
Query: 123 VFALLRRFHSIIGESPT 139
A++ R I E T
Sbjct: 244 SLAIIGRLDWINYEKLT 260
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 20 ACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79
C A+++A+ L++L D+ L+ +G ++ Q EGG+ G P Y++ L+++ +I
Sbjct: 189 TCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAII 248
Query: 80 NEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVD 113
D ++ + L +++ Q +GG R VD
Sbjct: 249 GRLDWINYEKLTEFILKCQDEKKGGISDRPENEVD 283
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/229 (17%), Positives = 87/229 (37%), Gaps = 14/229 (6%)
Query: 8 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGG 67
F HDA + + ++ L++L + + ++I Q +G G+ E
Sbjct: 78 FPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTR 137
Query: 68 YTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
+ + L+A+ ++ E +D + +V+ +GGF N +F G A+
Sbjct: 138 FVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIA 197
Query: 128 RRFHSIIGESPTPVDQRGAECSID----NTQTTTASDVSEGDGSSDEISSQGDEHCHFQH 183
+ + + + E + N + + DV ++ G
Sbjct: 198 NKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIG-------- 249
Query: 184 REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 232
R + L ++L C + +GG+ D+ D +HT + ++GLS+
Sbjct: 250 --RLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSL 296
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ E D+R Y A + +LN ++ NYI +Y+ G+A G E+HGG TFC
Sbjct: 166 EGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFC 225
Query: 72 GLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
G+A++ L+ + + + +L+ + W + RQ + G+ GR NK VD CYSFW G LL
Sbjct: 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 128 RRFH 131
+ F
Sbjct: 284 KIFQ 287
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 134 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 193
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 194 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 253
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 254 LASLKIIGRLHWI 266
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GGI+ G + H YT + + L +
Sbjct: 59 YWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDS 118
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 141
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 119 VHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 170
Query: 142 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 199
E +I+ + D G E S G +C H + L +
Sbjct: 171 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 226
Query: 200 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 254
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 227 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 286
Query: 255 S----NVLEPVHPVFNI 267
+ ++++P H +F I
Sbjct: 287 ADRPGDMVDPFHTLFGI 303
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 202 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 258
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 259 IIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 309
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 246 LASLKIIGRLHWI 258
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GGI+ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDS 110
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 141
+ +D++ ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 INVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 162
Query: 142 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 199
E +I+ + D G E S G +C H + L +
Sbjct: 163 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 218
Query: 200 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 254
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 219 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 278
Query: 255 S----NVLEPVHPVFNI 267
+ ++++P H +F I
Sbjct: 279 ADRPGDMVDPFHTLFGI 295
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 194 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 250
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 251 IIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 246 LASLKIIGRLHWI 258
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 23/257 (8%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 110
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 141
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 162
Query: 142 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 199
E +I+ + D G E S G +C H + L +
Sbjct: 163 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 218
Query: 200 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 254
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 219 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 278
Query: 255 S----NVLEPVHPVFNI 267
+ ++++P H +F I
Sbjct: 279 ADRPGDMVDPFHTLFGI 295
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 194 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 250
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 251 IIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F GEID R + A++ ++L LD ++ ++LSC ++GG P
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 121 GGVFALLRRFHSI 133
++ R H I
Sbjct: 246 LASLKIIGRLHWI 258
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 46/293 (15%)
Query: 22 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81
Y ++V ++ L + + +I SCQ GGI+ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDS 110
Query: 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 141
+ +D++ ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 INVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 162
Query: 142 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 199
E +I+ + D G E S G +C H + L +
Sbjct: 163 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 218
Query: 200 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWL------------KDEDSSPL 246
L Q P GGL + K D ++ + L+ L I + W+ +DE++
Sbjct: 219 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGF 278
Query: 247 ---PRAVLGPYSNV-------------LEPVHPVFNI---VLDRYHEAHEFFS 280
P ++ P+ + ++PV+PVF + VL R + E S
Sbjct: 279 ADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS 331
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
+ C +++ S L+ ++ +LL G ++ Q GG+ G P Y++ LA++
Sbjct: 194 IYCCTGFLAITSQLHQVNSDLL---GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK 250
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALL 127
+I +D + L +++ Q E GGF R +VD ++ + +LL
Sbjct: 251 IIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ E D+R Y A + +LN ++ +YI +Y+ G+A G E+HGG TFC
Sbjct: 166 EGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225
Query: 72 GLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
G+A++ L+ + + + +L+ + W + RQ + G+ GR NK VD CYSFW G LL
Sbjct: 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 128 RRFH 131
+ F
Sbjct: 284 KIFQ 287
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ E D+R Y A + +LN ++ YI +Y+ G+A G E+HGG TFC
Sbjct: 166 EGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFC 225
Query: 72 GLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
G+A++ L+ + + + +L+ + W + RQ + G+ GR NK VD CYSFW G LL
Sbjct: 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 128 RRFH 131
+ F
Sbjct: 284 KIFQ 287
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ E D+R Y A + +LN ++ +YI +Y+ G+A G E+HGG TFC
Sbjct: 166 EGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225
Query: 72 GLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 127
G+A++ L+ + + + +L+ + W + RQ + G+ GR NK VD CYSFW G LL
Sbjct: 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 128 RRFH 131
+ F
Sbjct: 284 KIFQ 287
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
+++ G+ + GEID R Y+ I+ +IL LD ++++ C ++GG P
Sbjct: 112 LQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCP 171
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
G+E+HG F +AA+ ++N+ D +D + L W+ RQ GG GR KL D CY +W
Sbjct: 172 GAESHGAMVFTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWD 231
Query: 121 GGVFALLRRFHSI 133
A++ + I
Sbjct: 232 LSPLAIIGKLDWI 244
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 13/232 (5%)
Query: 5 SGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEA 64
SG F + + + A+ V ++L+ L V +YI+ Q +G + G+ E
Sbjct: 68 SGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEI 127
Query: 65 HGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 124
+ + G+ + ++ + D L+ + + W++ +GGF G F
Sbjct: 128 DARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAAL 187
Query: 125 ALLRRFHSIIGESP-TPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH 183
+L + I E + +R + N + D G ++ G
Sbjct: 188 KILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIG----KLDW 243
Query: 184 REREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQ 234
+R L LL +QD GG D+ D YHTC+ L+GLS+ Q
Sbjct: 244 IDRNQLID-------FLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLLQ 288
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
V C A+ + + L+++D+ELL G +I Q GG+ G P Y + L+ +
Sbjct: 180 VFTCVAALKILNKLDLIDEELL---GWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLA 236
Query: 78 LINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE 136
+I + D +D + LI +++ Q + GGF R D ++ + +LL +F +I
Sbjct: 237 IIGKLDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLL-QFPNI--- 292
Query: 137 SPTPVDQR 144
PVD R
Sbjct: 293 --EPVDPR 298
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 18 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77
V A Y + +L D + + +++LSC T GG A PG + H T + +
Sbjct: 33 VSAIYWSCMSFWLLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLA 92
Query: 78 LINEADRLDLDALIGWVVFRQGVEGGFQG 106
+++ +D D + +++ Q +G +G
Sbjct: 93 MLDSLHVVDKDKVASYIIGLQNEDGSMKG 121
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%)
Query: 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
++ G+F +GE+D R +++ +L L + + +++ C +GG P
Sbjct: 132 LQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRP 191
Query: 61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
GSE+H G +C + A+ + D +D D W+ FRQ GG GR KL D CYS+W
Sbjct: 192 GSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWV 251
Query: 121 GGVFALLRRFHSI 133
A+L R + I
Sbjct: 252 LASLAILGRLNFI 264
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 39/259 (15%)
Query: 13 AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 72
A + V Y ++ + L+ + + NY+L C+ +GG PG ++H +T C
Sbjct: 48 AEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCA 107
Query: 73 LAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHS 132
+ +I+ N ++ D D + +V Q +G F G + VD ++ LL R +
Sbjct: 108 VQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLST 167
Query: 133 IIGESPTPVDQR------------GAE-------CSIDNTQTTTASDVSEGDGSSDEISS 173
+ +S R G+E C + D + D +++ ++
Sbjct: 168 LNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAF 227
Query: 174 QGDEHCHFQHR-EREP-------------------LFHSIALQRYLLLCSQDPRGGLRDK 213
+ + R E+ P S A+++++ C D GG D+
Sbjct: 228 RQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADR 287
Query: 214 LRKPRDYYHTCYCLSGLSI 232
D +HT + ++ LS+
Sbjct: 288 PGDCADPFHTVFGIAALSL 306
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 7 AFRMHDAGEIDVR------ACYTAISVASI-----LNILDDELLQNVGNYILSCQTYE-G 54
AFR D+G ++ R CY+ +AS+ LN +D + ++ +I +CQ E G
Sbjct: 226 AFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKK---FIYACQDDETG 282
Query: 55 GIAGEPGSEAHGGYTFCGLAAMILINE 81
G A PG A +T G+AA+ L +
Sbjct: 283 GFADRPGDCADPFHTVFGIAALSLFGD 309
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 2 KDPSGAFR---MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG 58
K G FR + + D+R Y A ++AS+L+ + L ++ YI SCQ YEGG +
Sbjct: 130 KTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLDFSLSDPLCSI-QYIKSCQRYEGGFSL 188
Query: 59 EPGSEAHGGYTFCGLAAMILI------------NEADRL-----DLDALIGWVVFRQGVE 101
P EAH G TFC LA+ LI N++ L ++ LI W+ RQ
Sbjct: 189 LPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLSS 248
Query: 102 GGFQGRTNKLVDGCYSFWQGGVFALL 127
GG GRTNK VD CY++W LL
Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKLL 274
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 12 DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC 71
+ G+ D+R ++A +++ IL+ ++ +YI SC +YE P EAHGG T+C
Sbjct: 160 NVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYC 219
Query: 72 GLAAMILINEADRLD--LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 129
+A++ L+ D L+ + L W+V +Q GF GRTNK D CY+FW G ++ R
Sbjct: 220 AIASLSLLGRLDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMIDR 277
Query: 130 FHSI 133
+ I
Sbjct: 278 YDLI 281
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 17 DVRACYTAISVASILNILDDELL------QNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 70
D+R CY A+++ I E + + YI+S Q Y G +E H GYT
Sbjct: 164 DLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGAFGAH--NEPHSGYTS 221
Query: 71 CGLAAMILINEADRLD---LDALIGWVVFRQ-------------------GVEGGFQGRT 108
C L+ + L++ ++L + I W++ RQ +GGFQGR
Sbjct: 222 CALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQGRE 281
Query: 109 NKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGD 165
NK D CY+FW LL + ++ ++ + +D TQ T S+ D
Sbjct: 282 NKFADTCYAFWCLNSLHLLTKDWKMLCQTELVTNYL-----LDRTQKTLTGGFSKND 333
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 74 AAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 131
A+++ + E DR D LD L+ +G G + RT + DGC FW+ +F LL H
Sbjct: 146 ASILCLQEVDRFDDLDVLLK----NRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQH 200
>sp|P40017|YAT2_YEAST Carnitine O-acetyltransferase YAT2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAT2 PE=1 SV=1
Length = 923
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 130 FHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRERE 187
F ++ G + +PV QRG + D + TASD+ + D SSDE + F R+R+
Sbjct: 174 FLNLFGTTRSPVFQRGEVENFDLNKPYTASDLEDPDYSSDEDDNDEPTQKDFDDRKRK 231
>sp|Q9LS39|CCR4C_ARATH Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis
thaliana GN=CCR4-3 PE=2 SV=2
Length = 448
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 76 MILINEADR-LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 129
+I + E D+ DL +++ + G G ++ RT VDGC FW+ F +L R
Sbjct: 157 IISMQEVDKYFDLFSMME----KAGYAGSYKRRTGDNVDGCAMFWKADRFGVLER 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,223,131
Number of Sequences: 539616
Number of extensions: 5154242
Number of successful extensions: 10401
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10279
Number of HSP's gapped (non-prelim): 86
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)