Query 023444
Match_columns 282
No_of_seqs 179 out of 1145
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02710 farnesyltranstransfer 100.0 5.7E-63 1.2E-67 474.9 23.0 270 1-281 155-437 (439)
2 KOG0365 Beta subunit of farnes 100.0 3.5E-63 7.7E-68 453.1 17.5 234 1-281 183-417 (423)
3 KOG0366 Protein geranylgeranyl 100.0 2E-57 4.4E-62 402.7 16.0 246 16-277 45-325 (329)
4 COG5029 CAL1 Prenyltransferase 100.0 9.3E-56 2E-60 401.1 18.0 203 1-280 138-341 (342)
5 PLN03201 RAB geranylgeranyl tr 100.0 1.3E-55 2.9E-60 411.9 18.4 259 2-276 21-314 (316)
6 KOG0367 Protein geranylgeranyl 100.0 5.1E-51 1.1E-55 367.2 17.3 200 1-277 137-343 (347)
7 PLN03201 RAB geranylgeranyl tr 100.0 4.2E-50 9.1E-55 374.9 18.9 180 1-237 116-295 (316)
8 PLN02710 farnesyltranstransfer 100.0 3.3E-50 7.2E-55 386.6 15.6 206 15-236 69-284 (439)
9 cd02895 GGTase-I Geranylgerany 100.0 2.5E-49 5.3E-54 368.4 17.0 216 3-233 67-307 (307)
10 cd02894 GGTase-II Geranylgeran 100.0 1.3E-48 2.8E-53 360.2 16.1 216 3-233 64-287 (287)
11 KOG0366 Protein geranylgeranyl 100.0 1.9E-48 4.2E-53 345.5 15.2 182 1-239 126-307 (329)
12 cd02893 FTase Protein farnesyl 100.0 5.5E-48 1.2E-52 358.2 16.6 219 1-233 59-299 (299)
13 cd02893 FTase Protein farnesyl 100.0 2.2E-47 4.7E-52 354.2 16.7 214 5-236 16-240 (299)
14 cd02890 PTase Protein prenyltr 100.0 2.9E-45 6.3E-50 336.5 17.0 218 1-233 59-286 (286)
15 cd02895 GGTase-I Geranylgerany 100.0 4.6E-45 1E-49 339.7 16.3 208 14-237 23-262 (307)
16 COG5029 CAL1 Prenyltransferase 100.0 1.8E-45 3.8E-50 334.1 9.1 205 16-237 53-269 (342)
17 cd02894 GGTase-II Geranylgeran 100.0 2.3E-44 5.1E-49 331.8 15.9 208 13-236 25-241 (287)
18 KOG0365 Beta subunit of farnes 100.0 2E-44 4.4E-49 330.0 11.1 208 14-237 96-314 (423)
19 KOG0367 Protein geranylgeranyl 100.0 4.6E-43 1E-47 315.8 10.9 212 14-241 35-278 (347)
20 cd02890 PTase Protein prenyltr 100.0 1.6E-40 3.6E-45 305.0 16.6 209 12-236 21-240 (286)
21 cd00688 ISOPREN_C2_like This g 99.9 1.2E-22 2.5E-27 181.7 13.8 217 1-232 64-299 (300)
22 cd00688 ISOPREN_C2_like This g 99.7 2.9E-17 6.2E-22 146.8 13.6 222 2-236 12-254 (300)
23 PF13249 Prenyltrans_2: Prenyl 99.7 8.6E-18 1.9E-22 132.7 6.9 108 43-155 1-112 (113)
24 PF13249 Prenyltrans_2: Prenyl 99.7 4.3E-17 9.3E-22 128.7 7.9 102 1-105 7-112 (113)
25 cd02889 SQCY Squalene cyclase 99.4 1.8E-12 4E-17 121.4 13.7 219 1-235 11-293 (348)
26 PF00432 Prenyltrans: Prenyltr 99.4 2.6E-13 5.6E-18 91.0 5.3 44 37-80 1-44 (44)
27 PF00432 Prenyltrans: Prenyltr 99.4 1.5E-13 3.3E-18 92.1 4.1 44 85-128 1-44 (44)
28 cd02889 SQCY Squalene cyclase 99.3 5E-12 1.1E-16 118.5 10.1 155 1-158 129-320 (348)
29 cd02892 SQCY_1 Squalene cyclas 99.3 2.1E-11 4.6E-16 124.0 12.3 200 4-213 358-605 (634)
30 cd02892 SQCY_1 Squalene cyclas 99.2 6.8E-11 1.5E-15 120.3 10.8 154 1-157 412-605 (634)
31 COG1689 Uncharacterized protei 99.2 1.1E-10 2.3E-15 102.6 10.1 210 2-234 19-272 (274)
32 TIGR03463 osq_cycl 2,3-oxidosq 99.2 1.1E-10 2.4E-15 118.7 10.3 153 1-156 412-604 (634)
33 TIGR03463 osq_cycl 2,3-oxidosq 99.2 1.7E-10 3.6E-15 117.4 10.7 107 1-108 489-606 (634)
34 COG1689 Uncharacterized protei 99.1 6E-10 1.3E-14 97.9 8.3 182 35-237 4-228 (274)
35 TIGR01507 hopene_cyclase squal 99.0 7.6E-09 1.6E-13 105.4 16.1 175 4-236 364-574 (635)
36 TIGR01787 squalene_cyclas squa 99.0 1.2E-09 2.7E-14 110.9 9.8 154 1-157 400-589 (621)
37 TIGR01507 hopene_cyclase squal 98.9 4.5E-09 9.7E-14 107.0 10.7 105 1-106 483-598 (635)
38 PLN02993 lupeol synthase 98.9 8.6E-09 1.9E-13 106.1 11.4 143 37-236 513-696 (763)
39 PLN02993 lupeol synthase 98.9 6.7E-09 1.4E-13 106.9 10.5 105 1-106 602-722 (763)
40 TIGR01787 squalene_cyclas squa 98.9 6.8E-09 1.5E-13 105.5 10.5 106 1-107 472-589 (621)
41 PLN03012 Camelliol C synthase 98.8 1.9E-08 4E-13 103.5 10.3 105 1-106 602-722 (759)
42 PLN03012 Camelliol C synthase 98.8 9.2E-08 2E-12 98.4 14.7 104 21-125 566-691 (759)
43 PF13243 Prenyltrans_1: Prenyl 98.6 3E-08 6.5E-13 77.8 3.8 94 2-99 12-107 (109)
44 cd02896 complement_C3_C4_C5 Pr 98.5 1E-06 2.3E-11 81.8 10.5 99 1-99 64-184 (297)
45 cd02897 A2M_2 Proteins similar 98.4 4.5E-06 9.7E-11 77.0 12.6 99 1-99 61-174 (292)
46 cd02896 complement_C3_C4_C5 Pr 98.3 3.9E-06 8.5E-11 77.9 9.9 94 14-107 16-125 (297)
47 PF13243 Prenyltrans_1: Prenyl 98.3 6.8E-07 1.5E-11 70.1 3.3 66 40-107 2-68 (109)
48 cd02897 A2M_2 Proteins similar 97.9 6.5E-05 1.4E-09 69.3 10.4 92 14-105 16-122 (292)
49 cd02891 A2M_like Proteins simi 97.9 7.6E-05 1.7E-09 67.8 10.2 115 15-129 17-154 (282)
50 cd02891 A2M_like Proteins simi 97.9 7.3E-05 1.6E-09 67.9 9.8 99 1-99 61-172 (282)
51 PF07678 A2M_comp: A-macroglob 97.6 0.00071 1.5E-08 61.2 11.1 96 2-97 10-125 (246)
52 KOG0497 Oxidosqualene-lanoster 97.3 0.00062 1.3E-08 69.1 7.9 105 1-106 601-721 (760)
53 PF07678 A2M_comp: A-macroglob 96.7 0.003 6.4E-08 57.1 6.0 62 46-107 6-71 (246)
54 KOG0497 Oxidosqualene-lanoster 94.6 0.12 2.6E-06 52.9 7.7 130 18-153 562-718 (760)
55 COG1657 SqhC Squalene cyclase 90.8 0.78 1.7E-05 46.0 7.2 132 36-224 280-434 (517)
56 COG1657 SqhC Squalene cyclase 90.1 0.27 5.8E-06 49.2 3.4 106 1-107 364-481 (517)
57 TIGR02474 pec_lyase pectate ly 90.1 0.75 1.6E-05 42.9 6.1 92 16-107 41-159 (290)
58 KOG1366 Alpha-macroglobulin [P 55.6 38 0.00083 38.4 7.6 90 17-106 944-1045(1436)
59 PF01122 Cobalamin_bind: Eukar 52.3 19 0.00041 34.2 4.0 60 39-106 217-279 (326)
60 TIGR02474 pec_lyase pectate ly 38.0 2.8E+02 0.0061 26.0 9.3 19 39-57 139-157 (290)
61 PLN02592 ent-copalyl diphospha 37.8 43 0.00094 35.7 4.4 41 38-78 116-158 (800)
62 KOG1366 Alpha-macroglobulin [P 36.0 54 0.0012 37.3 5.0 57 2-58 984-1045(1436)
63 PLN02279 ent-kaur-16-ene synth 35.5 44 0.00096 35.5 4.1 44 37-80 73-120 (784)
64 PF07944 DUF1680: Putative gly 24.9 2.5E+02 0.0055 28.1 7.3 44 15-58 59-104 (520)
65 PF05817 Ribophorin_II: Oligos 22.2 4.9E+02 0.011 27.1 8.8 87 13-100 44-159 (636)
No 1
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=5.7e-63 Score=474.88 Aligned_cols=270 Identities=70% Similarity=1.176 Sum_probs=224.7
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|++||||.+.+++|+|+|+||||++++.||+.+++++.+++++||.+||++||||++.|+.|+|+++|||||++|+|||
T Consensus 155 ~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg 234 (439)
T PLN02710 155 MKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILIN 234 (439)
T ss_pred cCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCc-------c-c--ccCccccC
Q 023444 81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTP-------V-D--QRGAECSI 150 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~-------~-i--~~c~~~~~ 150 (282)
+++.+|.+++++||.+||..+|||+|||||++|+|||||++++|+||+++..++.+++.. . . ..|.+ .
T Consensus 235 ~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 312 (439)
T PLN02710 235 EVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACET--S 312 (439)
T ss_pred CccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccc--c
Confidence 999999999999999999999999999999999999999999999999886654332200 0 0 00110 0
Q ss_pred CCCccccCCCCCCCCCCCCccccccccccccccc---cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHH
Q 023444 151 DNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHR---EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCL 227 (282)
Q Consensus 151 dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~---~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~l 227 (282)
.-++. ......+..+...+..|+.. ...+++|.++|++|||.|+|.+.|||++||+|.||.|||||+|
T Consensus 313 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~L 383 (439)
T PLN02710 313 SSGKD---------DAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCL 383 (439)
T ss_pred ccccc---------cccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHH
Confidence 00000 00000000112222233221 2346899999999999999999999999999999999999999
Q ss_pred HhHHhhccCCCCCCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444 228 SGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281 (282)
Q Consensus 228 a~Lsll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~ 281 (282)
|+||++||.+..+.++++....|+++++|.|+||||+|||+.+++.++++||+.
T Consensus 384 sGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~~~~~~~~~f~~ 437 (439)
T PLN02710 384 SGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLDKYHEAIEFFSS 437 (439)
T ss_pred HHHHHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHHHHHHHHHHHhh
Confidence 999999999887777777666799999999999999999999999999999985
No 2
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-63 Score=453.14 Aligned_cols=234 Identities=59% Similarity=1.006 Sum_probs=218.0
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
||++||||.++..||.|+|.+|||+++..|||+.+++..+++.+||.+||++||||++.|+.|+|++|||||+|+|+||+
T Consensus 183 lK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn 262 (423)
T KOG0365|consen 183 LKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLN 262 (423)
T ss_pred hcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCC-CCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCC
Q 023444 81 EADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS 159 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~-~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~ 159 (282)
+.+.+|.+++.+|..+||. .+|||+||+||++|+|||||++|++.||.....- .|
T Consensus 263 ~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~-----------------~~------- 318 (423)
T KOG0365|consen 263 EMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSS-----------------AG------- 318 (423)
T ss_pred hhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcc-----------------cc-------
Confidence 9999999999999999998 8999999999999999999999999999874210 00
Q ss_pred CCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCC
Q 023444 160 DVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239 (282)
Q Consensus 160 ~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~ 239 (282)
. .....++|.++|++|||.|+|.+.|||++||+|++|.|||||+|++||+.++++..
T Consensus 319 -----~------------------s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~~~ 375 (423)
T KOG0365|consen 319 -----H------------------SLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYSCA 375 (423)
T ss_pred -----c------------------chhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhccC
Confidence 0 01125789999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~ 281 (282)
..++|++...+.+...|.|.|+||+||||++++++|+.||.+
T Consensus 376 ~~d~~~~~~~ilg~~~n~L~p~~pvyni~~~~~~~a~~yF~s 417 (423)
T KOG0365|consen 376 PSDSPHNPDRILGSSKNSLLPVHPVYNIPIDSVRKAIEYFLS 417 (423)
T ss_pred CCCCCCCCcccccCchhhcCccCccccCCHHHHHHHHHHHHh
Confidence 888888888889988999999999999999999999999975
No 3
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-57 Score=402.66 Aligned_cols=246 Identities=22% Similarity=0.326 Sum_probs=218.4
Q ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 023444 16 IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 95 (282)
Q Consensus 16 ~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id~~~~~~wl~ 95 (282)
-+|..+||.+.+++||+.++..++++++.||++||+.+|||++.||+++|+.+|++||++|++++.++.+|++++.+||.
T Consensus 45 lRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~ 124 (329)
T KOG0366|consen 45 LRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIK 124 (329)
T ss_pred hhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccc
Q 023444 96 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQG 175 (282)
Q Consensus 96 ~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~ 175 (282)
.+|++||+|.|+.++|+|+||+|||+++|+||++++.++.+++++|+++|.| .||||+..| |+|+
T Consensus 125 gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN--~DGGFG~~p-------------GaES 189 (329)
T KOG0366|consen 125 GLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN--FDGGFGCRP-------------GAES 189 (329)
T ss_pred hhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc--cCCCcCCCC-------------Cccc
Confidence 9999999999999999999999999999999999999999999999999999 999776543 6888
Q ss_pred ccccccccc------cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhcc-CCCCC--------
Q 023444 176 DEHCHFQHR------EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQH-SWLKD-------- 240 (282)
Q Consensus 176 ~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~-~~~~~-------- 240 (282)
|||..|+.. .....+|++.+ .|||+.||.+.||+||||+|+||+|||||++|+|+|+++ .|.+.
T Consensus 190 HagqifcCvgaLai~~~L~~vd~d~l-gwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl 268 (329)
T KOG0366|consen 190 HAGQIFCCVGALAITGKLHLVDRDLL-GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFIL 268 (329)
T ss_pred ccceehhhHHHHHHccchhhcCHHHH-HHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHH
Confidence 999999321 11256788766 566899999999999999999999999999999999998 56541
Q ss_pred ----------CCCCCCCccccCC----------CCCCcccCccccccCHHHHHHHHh
Q 023444 241 ----------EDSSPLPRAVLGP----------YSNVLEPVHPVFNIVLDRYHEAHE 277 (282)
Q Consensus 241 ----------~~~~~~~~~~~~~----------~~~~l~~~~p~~~i~~~~~~~~~~ 277 (282)
.++|++.-++|++ ....|.||+|+|++|++.+.+++-
T Consensus 269 ~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~~v~~r~~~ 325 (329)
T KOG0366|consen 269 ACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPKEVLQRIKV 325 (329)
T ss_pred hcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcHHHHhhhcc
Confidence 1467666556653 134599999999999999988753
No 4
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-56 Score=401.06 Aligned_cols=203 Identities=41% Similarity=0.809 Sum_probs=194.2
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|+|||+|.....||+|.|++|+|+++++||+.++.++.+..++||++|||+||||+..|+.|+|+++||||+++|++|+
T Consensus 138 lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~ 217 (342)
T COG5029 138 LKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLG 217 (342)
T ss_pred ccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccc-HHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCC
Q 023444 81 EADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS 159 (282)
Q Consensus 81 ~~~~id-~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~ 159 (282)
.++.+| +|++.+||.+||.++|||+||+||.+|+||+||++++++||++.
T Consensus 218 ~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~----------------------------- 268 (342)
T COG5029 218 KLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKL----------------------------- 268 (342)
T ss_pred cccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHhcchh-----------------------------
Confidence 999998 79999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCC
Q 023444 160 DVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239 (282)
Q Consensus 160 ~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~ 239 (282)
..+|.++|.+|||.|+|...|||++||++.||+|||++++++||+++...
T Consensus 269 ----------------------------~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~-- 318 (342)
T COG5029 269 ----------------------------DFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY-- 318 (342)
T ss_pred ----------------------------hhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC--
Confidence 35789999999999999889999999999999999999999999998753
Q ss_pred CCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhc
Q 023444 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 280 (282)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~ 280 (282)
+.||||+|++|.+..++++.||-
T Consensus 319 ------------------l~~v~p~~clP~e~~~k~k~y~~ 341 (342)
T COG5029 319 ------------------LNPVDPIYCLPQEVTNKFKKYFC 341 (342)
T ss_pred ------------------CCCCCCcccCCHHHHHHHHHhhc
Confidence 78999999999999999999984
No 5
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.3e-55 Score=411.89 Aligned_cols=259 Identities=21% Similarity=0.291 Sum_probs=222.3
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~ 81 (282)
++.+|+|.....+.++|+.+||+|++|.+|+.++.++++++++||++||++||||++.|++++|+++||||+++|.++++
T Consensus 21 ~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~ 100 (316)
T PLN03201 21 EKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDR 100 (316)
T ss_pred CCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhh
Confidence 55678887655566788899999999999999888899999999999999999999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCC
Q 023444 82 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDV 161 (282)
Q Consensus 82 ~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~ 161 (282)
++.+|++++++||.++|++||||.+++++|+|+||+|||++++.||+.+..++.+++++||.+||+ +||||+..|
T Consensus 101 ~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~--~dGGF~~~p--- 175 (316)
T PLN03201 101 LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKN--FDGGFGCTP--- 175 (316)
T ss_pred hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--CCCCcCCCC---
Confidence 888999999999999999999999999999999999999999999998888889999999999999 999887644
Q ss_pred CCCCCCCCccccccccccccccc------cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhcc
Q 023444 162 SEGDGSSDEISSQGDEHCHFQHR------EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQH 235 (282)
Q Consensus 162 ~~g~~~s~~~~~~~~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~ 235 (282)
+.|+|+++||+.. .....+|.+.+++| |.+||..+|||+|||||+||+|||||++|+|+||+.
T Consensus 176 ----------~~esh~g~T~caiaaL~llg~~~~~d~~~l~~w-L~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~ 244 (316)
T PLN03201 176 ----------GGESHAGQIFCCVGALAITGSLHHVDKDLLGWW-LCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDR 244 (316)
T ss_pred ----------CCCCccceehHHHHHHHHcCccccCCHHHHHHH-HHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhcc
Confidence 4577999888322 11246788999899 557898899999999999999999999999999998
Q ss_pred CCCCCC-------------------CCCCCCccccCCC----------CCCcccCccccccCHHHHHHHH
Q 023444 236 SWLKDE-------------------DSSPLPRAVLGPY----------SNVLEPVHPVFNIVLDRYHEAH 276 (282)
Q Consensus 236 ~~~~~~-------------------~~~~~~~~~~~~~----------~~~l~~~~p~~~i~~~~~~~~~ 276 (282)
....+. ++|+...++++++ ...|.+|||+|+||.+++++++
T Consensus 245 ~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~p~~~~~~~~~~~~~ 314 (316)
T PLN03201 245 VHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAYALPVDVVNRIG 314 (316)
T ss_pred ccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHhc
Confidence 542211 2444333444432 2358999999999999998764
No 6
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-51 Score=367.19 Aligned_cols=200 Identities=33% Similarity=0.613 Sum_probs=184.0
Q ss_pred CCCCCCCee-ecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHh
Q 023444 1 MKDPSGAFR-MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 1 ~~~~dG~F~-~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lL 79 (282)
+|++||+|. ...++|+|||++|||++|++||+.+..+|+++++.||++||++||||+..|+.|+|+++||||||+|+|+
T Consensus 137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~ 216 (347)
T KOG0367|consen 137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM 216 (347)
T ss_pred hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence 589999997 5578999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccC--C----cccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCC
Q 023444 80 NEA--D----RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 153 (282)
Q Consensus 80 g~~--~----~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg 153 (282)
+++ + ..+++++++|+..||..+|||+||+||.+|+||+||++++|+||+..
T Consensus 217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~----------------------- 273 (347)
T KOG0367|consen 217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDAD----------------------- 273 (347)
T ss_pred hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccch-----------------------
Confidence 986 3 34689999999999999999999999999999999999999999863
Q ss_pred ccccCCCCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhh
Q 023444 154 QTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 233 (282)
Q Consensus 154 ~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll 233 (282)
+++|.+.+++|+++++|.-.|||++.|+..||++|||+++++|+++
T Consensus 274 ----------------------------------~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ 319 (347)
T KOG0367|consen 274 ----------------------------------WLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALL 319 (347)
T ss_pred ----------------------------------HhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHh
Confidence 4677889999999887766799999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHh
Q 023444 234 QHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHE 277 (282)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~ 277 (282)
+... +.|+||-.||+.+..++.+.
T Consensus 320 ee~~--------------------~~~v~p~l~~s~~~~~r~~~ 343 (347)
T KOG0367|consen 320 EEKG--------------------LSPVCPSLNMSMRASERCCD 343 (347)
T ss_pred cCCC--------------------CCCCCccccccHHHHHHHHH
Confidence 7542 67999999999999888764
No 7
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=4.2e-50 Score=374.86 Aligned_cols=180 Identities=32% Similarity=0.635 Sum_probs=170.9
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|++||||...+++|.|+|.+|||++++.||+.++.++++++++||++||++||||++.|+.|+|+++|||||++|+++|
T Consensus 116 ~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg 195 (316)
T PLN03201 116 LQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITG 195 (316)
T ss_pred hcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcC
Confidence 58999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCC
Q 023444 81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASD 160 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~ 160 (282)
.++.+|++++++||.+||+.+|||+|||||++|+|||||++++|+||++.
T Consensus 196 ~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~------------------------------ 245 (316)
T PLN03201 196 SLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRV------------------------------ 245 (316)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccc------------------------------
Confidence 99989999999999999999999999999999999999999999999853
Q ss_pred CCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCC
Q 023444 161 VSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW 237 (282)
Q Consensus 161 ~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~ 237 (282)
.++|.++|++||++|+|...|||++||+|.||+|||||++|+|+|+++..
T Consensus 246 ---------------------------~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~ 295 (316)
T PLN03201 246 ---------------------------HWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPG 295 (316)
T ss_pred ---------------------------cccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCC
Confidence 34789999999998876678999999999999999999999999998754
No 8
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=3.3e-50 Score=386.60 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=188.2
Q ss_pred cchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc---CCcccHHHH
Q 023444 15 EIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE---ADRLDLDAL 90 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~~-~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~---~~~id~~~~ 90 (282)
-+.+..+||++.+|.||+. +++++++++++||++||+++|||++.|++++|+++|||||++|.+||. ++.||++++
T Consensus 69 a~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l 148 (439)
T PLN02710 69 ANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKL 148 (439)
T ss_pred hhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHH
Confidence 4789999999999999998 678899999999999999999999999999999999999999999995 567899999
Q ss_pred HHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCc
Q 023444 91 IGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDE 170 (282)
Q Consensus 91 ~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~ 170 (282)
++||.++|++||||.+++++|+|+|++|||++++.||+.+..++.+++++||++||+ +||||+..|
T Consensus 149 ~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~--~dGGF~g~P------------ 214 (439)
T PLN02710 149 YTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQT--YEGGIGGEP------------ 214 (439)
T ss_pred HHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCC--CCCCCCCCC------------
Confidence 999999999999999999999999999999999999999888889999999999999 999887754
Q ss_pred cccccccccccccc------cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccC
Q 023444 171 ISSQGDEHCHFQHR------EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236 (282)
Q Consensus 171 ~~~~~~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~ 236 (282)
+.|+|++++|+.. .....+|.++|++|++ .||..+|||+|||||++|+|||||++|+|+|++..
T Consensus 215 -~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~-~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~ 284 (439)
T PLN02710 215 -GAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVV-FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQL 284 (439)
T ss_pred -CCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHH-HhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHH
Confidence 5688999999421 1225578999999965 67888999999999999999999999999999974
No 9
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=2.5e-49 Score=368.39 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=193.3
Q ss_pred CCCCCeeecCC----------CcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCCCCcccCCC---CCCCchhH
Q 023444 3 DPSGAFRMHDA----------GEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEP---GSEAHGGY 68 (282)
Q Consensus 3 ~~dG~F~~~~~----------ge~d~r~~y~av~~l~lL~~~-~~~~~~~~~~~I~scq~~dGGF~~~p---~~esh~~~ 68 (282)
++||||++.++ +++|+++||||+++|.||+.. +.++++++++||++||++||||++.+ ++|+|+++
T Consensus 67 ~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ 146 (307)
T cd02895 67 LPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRF 146 (307)
T ss_pred CCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHH
Confidence 89999998665 589999999999999999863 45789999999999999999999997 89999999
Q ss_pred HHHHHHHHHHhccCC--cccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhh---cccCCCCCcccc
Q 023444 69 TFCGLAAMILINEAD--RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH---SIIGESPTPVDQ 143 (282)
Q Consensus 69 TycAl~~L~lLg~~~--~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~---~i~~~~~~~~i~ 143 (282)
|||||++|.+|+..+ .+|++++++||.+||++||||.++++.|+|++|||||+++|+||+.+. .++.+++++|+.
T Consensus 147 ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~ 226 (307)
T cd02895 147 CYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLV 226 (307)
T ss_pred HHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 999999999999876 689999999999999999999999999999999999999999999876 678999999999
Q ss_pred cCccccCCCCccccCCCCCCCCCCCCcccccccccccccc------ccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 023444 144 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH------REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKP 217 (282)
Q Consensus 144 ~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~------~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~ 217 (282)
+||+ .+|||+..| +.+.|+.++|+. .....++|.++|++||+.|+|..+|||++||+|.
T Consensus 227 ~rQ~--~~GGF~gr~-------------~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~ 291 (307)
T cd02895 227 HRQV--SGTGFNGRP-------------NKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSH 291 (307)
T ss_pred HhcC--CCCCcCCCC-------------CCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCC
Confidence 9999 889887654 345677777721 1123678999999999988777799999999999
Q ss_pred CCchhhhHHHHhHHhh
Q 023444 218 RDYYHTCYCLSGLSIC 233 (282)
Q Consensus 218 ~D~cyS~w~la~Lsll 233 (282)
||+|||||++|+|+|+
T Consensus 292 ~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 292 PDPLHSYLGLAALSLI 307 (307)
T ss_pred CChhHHHHHHHHHHhC
Confidence 9999999999999985
No 10
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.3e-48 Score=360.19 Aligned_cols=216 Identities=18% Similarity=0.313 Sum_probs=194.8
Q ss_pred CCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 3 DPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL--LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 3 ~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~--~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
++||+|...++.+++++.||+|+.++.+|+.++.++ ++++++||++||++||||++.|+.|+|+++||||+++|.+|+
T Consensus 64 ~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~ 143 (287)
T cd02894 64 NEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLG 143 (287)
T ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhC
Confidence 679999998888999999999999999998766666 999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCC
Q 023444 81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASD 160 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~ 160 (282)
..+.+|++++++||.+||++||||++++++|+|+||||||+++|.+|+..+.++.+++++|+.+||+ .+|||+..|
T Consensus 144 ~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~--~~GGf~gr~-- 219 (287)
T cd02894 144 KLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQL--PSGGLNGRP-- 219 (287)
T ss_pred CcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCC--CCCCcCCCC--
Confidence 8888999999999999999999999999999999999999999999999888899999999999998 899987765
Q ss_pred CCCCCCCCCcccccccccccccc------ccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhh
Q 023444 161 VSEGDGSSDEISSQGDEHCHFQH------REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 233 (282)
Q Consensus 161 ~~~g~~~s~~~~~~~~~~~~f~~------~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll 233 (282)
+.+.|+.++|.. .....++|.+++++||+.++|.+.|||++||+|.||+|||||++++|+|+
T Consensus 220 -----------~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 220 -----------EKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred -----------CCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 234566666621 11235689999999988775578899999999999999999999999985
No 11
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-48 Score=345.51 Aligned_cols=182 Identities=32% Similarity=0.629 Sum_probs=174.8
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
||+|||||.++.+||.|.|++||||+.|+||+.++.+++++.++|+++|.|.|||||..||.|||.+..||+|++|+++|
T Consensus 126 Lq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~ 205 (329)
T KOG0366|consen 126 LQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITG 205 (329)
T ss_pred hcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCC
Q 023444 81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASD 160 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~ 160 (282)
+++.+|++.+-.||..||.+.||.+|||.|.+|+||+||++++|.|++++++
T Consensus 206 ~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~w---------------------------- 257 (329)
T KOG0366|consen 206 KLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHW---------------------------- 257 (329)
T ss_pred chhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhh----------------------------
Confidence 9999999999999999999999999999999999999999999999999743
Q ss_pred CCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCC
Q 023444 161 VSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239 (282)
Q Consensus 161 ~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~ 239 (282)
+|+++|++|||.|+..+.|||++||+..+|++||++++|+|||+++..+.
T Consensus 258 -----------------------------Id~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~ 307 (329)
T KOG0366|consen 258 -----------------------------IDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLK 307 (329)
T ss_pred -----------------------------ccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCce
Confidence 67889999999886668899999999999999999999999999987643
No 12
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=5.5e-48 Score=358.17 Aligned_cols=219 Identities=29% Similarity=0.427 Sum_probs=195.0
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~ 77 (282)
+|++||+|...+++++|+++||+|+.+|.+|+. ++.++++++++||++||++||||+..|+.|+|+++|||||+++.
T Consensus 59 ~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~ 138 (299)
T cd02893 59 CQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVAS 138 (299)
T ss_pred hcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHH
Confidence 478999999999999999999999999999987 45788999999999999999999999999999999999999999
Q ss_pred HhccCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCcccc
Q 023444 78 LINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTT 157 (282)
Q Consensus 78 lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~ 157 (282)
+|+.++..+++++++||.+||++||||+++|++|+|+|||||++++|+||+..+.++.+++.+|+.+||+ ..+|||...
T Consensus 139 lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~-~~~GGf~gr 217 (299)
T cd02893 139 LLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQM-RFEGGFQGR 217 (299)
T ss_pred HhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcC-CCCCCcCCC
Confidence 9998888899999999999999999999999999999999999999999999888899999999999997 238988776
Q ss_pred CCCCCCCCCCCCcccccccccccc-------cccc------------CCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 023444 158 ASDVSEGDGSSDEISSQGDEHCHF-------QHRE------------REPLFHSIALQRYLLLCSQDPRGGLRDKLRKPR 218 (282)
Q Consensus 158 ~~~~~~g~~~s~~~~~~~~~~~~f-------~~~~------------~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~ 218 (282)
|. -+.+.-++| +... ..+++|.++|++|||.|+|..+|||++||+|.|
T Consensus 218 p~-------------k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~ 284 (299)
T cd02893 218 TN-------------KLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPR 284 (299)
T ss_pred CC-------------CCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCC
Confidence 62 122333333 1111 136789999999999888888999999999999
Q ss_pred CchhhhHHHHhHHhh
Q 023444 219 DYYHTCYCLSGLSIC 233 (282)
Q Consensus 219 D~cyS~w~la~Lsll 233 (282)
|+||||+++++|+|.
T Consensus 285 D~yHT~~~l~~Lsl~ 299 (299)
T cd02893 285 DFYHTCYALSGLSIA 299 (299)
T ss_pred CchhHHHHHHHHhcC
Confidence 999999999999973
No 13
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.2e-47 Score=354.16 Aligned_cols=214 Identities=19% Similarity=0.234 Sum_probs=189.1
Q ss_pred CCCeeecCCCcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc--
Q 023444 5 SGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE-- 81 (282)
Q Consensus 5 dG~F~~~~~ge~d~r~~y~av~~l~lL~~-~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~-- 81 (282)
.++|... ..+++..+||++.+|.+|+. ++.++++++++||++||+++|||++.|++++|+++||||+++|.+|+.
T Consensus 16 p~~~~~~--d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~ 93 (299)
T cd02893 16 PSSFTSL--DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEE 93 (299)
T ss_pred Ccccccc--ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCch
Confidence 3444433 24699999999999999998 667889999999999999999999999999999999999999999997
Q ss_pred -CCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCC
Q 023444 82 -ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASD 160 (282)
Q Consensus 82 -~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~ 160 (282)
.+.+|++++++||.++|++||||...+++|+|+|++||+++++.||+.+..++.+++++|+.+||+ +||||+..|
T Consensus 94 ~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~--~dGGF~~~p-- 169 (299)
T cd02893 94 AYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQT--YEGGFGGVP-- 169 (299)
T ss_pred hhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC--CCCCcCCCC--
Confidence 467899999999999999999999999999999999999999999998877788999999999999 999887644
Q ss_pred CCCCCCCCCccccccccccccccc------cCCcccCHHHHHHHHHHhcCCC-CCCCCCCCCCCCCchhhhHHHHhHHhh
Q 023444 161 VSEGDGSSDEISSQGDEHCHFQHR------EREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSIC 233 (282)
Q Consensus 161 ~~~g~~~s~~~~~~~~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~~-~GGf~grp~k~~D~cyS~w~la~Lsll 233 (282)
+.|+|+++||... .....+|.+++++||+ .||.+ +|||+|||||.||+|||||++++|+++
T Consensus 170 -----------~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~-~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll 237 (299)
T cd02893 170 -----------GNEAHGGYTFCALAALAILGKPDKLDLESLLRWLV-ARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPIL 237 (299)
T ss_pred -----------CCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHH-hhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHH
Confidence 4677999999321 1224679999999976 56766 899999999999999999999999999
Q ss_pred ccC
Q 023444 234 QHS 236 (282)
Q Consensus 234 ~~~ 236 (282)
+..
T Consensus 238 ~~~ 240 (299)
T cd02893 238 EAI 240 (299)
T ss_pred HHH
Confidence 974
No 14
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2.9e-45 Score=336.49 Aligned_cols=218 Identities=27% Similarity=0.398 Sum_probs=195.1
Q ss_pred CC-CCCCCeeecCCCcchHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHH
Q 023444 1 MK-DPSGAFRMHDAGEIDVRACYTAISVASILNI--LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77 (282)
Q Consensus 1 ~~-~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~--~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~ 77 (282)
+| ++||+|...+++++|++.||+|+.++.+|+. .++++++++++||.+||++||||+..|+.|+|+++|||||++|.
T Consensus 59 ~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ 138 (286)
T cd02890 59 CQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILS 138 (286)
T ss_pred hhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHH
Confidence 36 8999999988899999999999999999998 57788999999999999999999999999999999999999999
Q ss_pred HhccCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCC-Cccc
Q 023444 78 LINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN-TQTT 156 (282)
Q Consensus 78 lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dG-g~~~ 156 (282)
++|....++++++++||.++|++||||++++++|+|+||||||+++|++|+..+.++.+++++|+.+||+ .+| ||+.
T Consensus 139 ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~--~~ggGf~g 216 (286)
T cd02890 139 LLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQL--ASGGGFNG 216 (286)
T ss_pred HhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCC--CCCCCcCC
Confidence 9998877899999999999999999999999999999999999999999999888899999999999998 776 7766
Q ss_pred cCCCCCCCCCCCCcccccccccccccc------ccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhH
Q 023444 157 TASDVSEGDGSSDEISSQGDEHCHFQH------REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGL 230 (282)
Q Consensus 157 ~~~~~~~g~~~s~~~~~~~~~~~~f~~------~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~L 230 (282)
.+ +.++|..++|.. ......++.++|.+||+.++|.++|||++||+|.||+|||||++++|
T Consensus 217 ~~-------------~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~l 283 (286)
T cd02890 217 RP-------------NKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGL 283 (286)
T ss_pred CC-------------CCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHH
Confidence 54 234466666621 11113589999999988788999999999999999999999999999
Q ss_pred Hhh
Q 023444 231 SIC 233 (282)
Q Consensus 231 sll 233 (282)
+++
T Consensus 284 sl~ 286 (286)
T cd02890 284 SLL 286 (286)
T ss_pred HcC
Confidence 974
No 15
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=4.6e-45 Score=339.71 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=184.0
Q ss_pred CcchHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcc----CCCCcccCCCC----------CCCchhHHHHHHHHH
Q 023444 14 GEIDVRACYTAISVASILNILD---DELLQNVGNYILSCQ----TYEGGIAGEPG----------SEAHGGYTFCGLAAM 76 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~~---~~~~~~~~~~I~scq----~~dGGF~~~p~----------~esh~~~TycAl~~L 76 (282)
..+++..+||++++|.+|+... .++|+++++||++|| +++|||++.++ +++|+++||+|+++|
T Consensus 23 d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L 102 (307)
T cd02895 23 DTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSL 102 (307)
T ss_pred hhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHH
Confidence 4578999999999999999765 689999999999999 99999999887 589999999999999
Q ss_pred HHhcc-CCcccHHHHHHHHHHcCCCCccccccc---CCCCCchhhhHHHHHHHHhhhhh--cccCCCCCcccccCccccC
Q 023444 77 ILINE-ADRLDLDALIGWVVFRQGVEGGFQGRT---NKLVDGCYSFWQGGVFALLRRFH--SIIGESPTPVDQRGAECSI 150 (282)
Q Consensus 77 ~lLg~-~~~id~~~~~~wl~~~Q~~dGGF~gr~---~~e~D~~ysy~a~a~l~lL~~~~--~i~~~~~~~~i~~c~~~~~ 150 (282)
.+|+. .+.+|++++++||.++|++||||.+.+ +.|.|+|++|||+++++||+.+. .++++++++||.+||+ +
T Consensus 103 ~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~--~ 180 (307)
T cd02895 103 LILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQS--Y 180 (307)
T ss_pred HHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccC--C
Confidence 99985 456899999999999999999999997 78999999999999999999876 5788999999999999 9
Q ss_pred CCCccccCCCCCCCCCCCCcccccccccccccc-------ccCC--cccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCch
Q 023444 151 DNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH-------RERE--PLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYY 221 (282)
Q Consensus 151 dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~-------~~~~--~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~c 221 (282)
||||+..| +.|+|+++||+. .... ..+|.+++++|++ .||...|||+|||||.||+|
T Consensus 181 dGGF~~~~-------------~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~-~rQ~~~GGF~gr~~k~~D~c 246 (307)
T cd02895 181 DGGFGQGP-------------GLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLV-HRQVSGTGFNGRPNKPADTC 246 (307)
T ss_pred CCCccCCC-------------CCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHH-HhcCCCCCcCCCCCCCCccc
Confidence 99887644 467799999832 1121 2578999999966 57888899999999999999
Q ss_pred hhhHHHHhHHhhccCC
Q 023444 222 HTCYCLSGLSICQHSW 237 (282)
Q Consensus 222 yS~w~la~Lsll~~~~ 237 (282)
||||++|+|+||+...
T Consensus 247 ysfw~~a~L~iL~~~~ 262 (307)
T cd02895 247 YSFWVGASLKLLDAFQ 262 (307)
T ss_pred hhhHHHHHHHHcCccc
Confidence 9999999999998754
No 16
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-45 Score=334.07 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=185.7
Q ss_pred chHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccC---CcccHHHHH
Q 023444 16 IDVRACYTAISVASILNILD-DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA---DRLDLDALI 91 (282)
Q Consensus 16 ~d~r~~y~av~~l~lL~~~~-~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~---~~id~~~~~ 91 (282)
+.+.+.||.+..+.||+..+ ..++|+.+.++++|++++|||++.|++++|+..||.||++|++++.. +++|++++.
T Consensus 53 ~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~ 132 (342)
T COG5029 53 SRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLA 132 (342)
T ss_pred cchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 56789999999999999987 78999999999999999999999999999999999999999999754 567889999
Q ss_pred HHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcc
Q 023444 92 GWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEI 171 (282)
Q Consensus 92 ~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~ 171 (282)
+||..+|++||+|.+...+|+|+|+.|+|+++++||+.++..+.+..++|+++||| |||||+.- +
T Consensus 133 ~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqn--yeGGFg~~-------------p 197 (342)
T COG5029 133 SFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQN--YEGGFGLC-------------P 197 (342)
T ss_pred HHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhc--cCCcccCC-------------C
Confidence 99999999999999999999999999999999999999888899999999999999 99988763 3
Q ss_pred cccccccccccc-------ccCCcccC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCC
Q 023444 172 SSQGDEHCHFQH-------REREPLFH-SIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW 237 (282)
Q Consensus 172 ~~~~~~~~~f~~-------~~~~~l~~-~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~ 237 (282)
++|+|+|+||+. .++ ..++ .|+|.+| |+.||.+.|||+|||||.||+||+||++++|+|++...
T Consensus 198 ~aEaHag~tFcalaalalL~~L-d~ls~~E~l~~W-l~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~ 269 (342)
T COG5029 198 YAEAHAGYTFCALAALALLGKL-DKLSDVEKLIRW-LAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLD 269 (342)
T ss_pred chhhccchHHHHHHHHHHHhcc-cccchHHHHHHH-HHHcccccCCcCCCcccCccchhhhhhcchHHhcchhh
Confidence 569999999943 223 3445 5899988 66899999999999999999999999999999999743
No 17
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.3e-44 Score=331.84 Aligned_cols=208 Identities=20% Similarity=0.267 Sum_probs=187.5
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CCCCcccCCCCCCCchhHHHHHHHHHHHhccCCccc--HHH
Q 023444 13 AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQ-TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD--LDA 89 (282)
Q Consensus 13 ~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq-~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id--~~~ 89 (282)
...+.+..+||++++|.+|+.++.++++++++||++|| +++|||++.++.++|+.+||+|+++|.+|+.++.+| +++
T Consensus 25 ~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~ 104 (287)
T cd02894 25 TEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEK 104 (287)
T ss_pred HHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 34578999999999999999988889999999999999 789999999999999999999999999998777888 999
Q ss_pred HHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCC
Q 023444 90 LIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSD 169 (282)
Q Consensus 90 ~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~ 169 (282)
+++||.++|++||||.+.+++++|+||||||++++.||++...++++++.+|+.+||+ +||||+..|
T Consensus 105 ~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~--~dGGF~~~~----------- 171 (287)
T cd02894 105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYN--FDGGFGCRP----------- 171 (287)
T ss_pred HHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCC--CCCCcCCCC-----------
Confidence 9999999999999999999999999999999999999998888899999999999999 999887643
Q ss_pred ccccccccccccccc------cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccC
Q 023444 170 EISSQGDEHCHFQHR------EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236 (282)
Q Consensus 170 ~~~~~~~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~ 236 (282)
+.|+|+++||... .....++.+++++||+ .||.++|||+|||+|.||+|||||++++|++++..
T Consensus 172 --~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~-~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~ 241 (287)
T cd02894 172 --GAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLC-ERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRL 241 (287)
T ss_pred --CCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHH-HhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccc
Confidence 4567888888321 1124578999999965 67888999999999999999999999999999875
No 18
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=329.95 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=187.7
Q ss_pred CcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc---CCcccHHH
Q 023444 14 GEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE---ADRLDLDA 89 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~-~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~---~~~id~~~ 89 (282)
.-+..+++||.+.++.+|+. ++.+..+++|+|+.+||.|+|||+|.||+-+|++.||+||.+|.++|. .+.||+++
T Consensus 96 DASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~ 175 (423)
T KOG0365|consen 96 DASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREK 175 (423)
T ss_pred ccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 34678999999999999994 566778999999999999999999999999999999999999999996 45799999
Q ss_pred HHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCC
Q 023444 90 LIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSD 169 (282)
Q Consensus 90 ~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~ 169 (282)
+..||.+++.+||||.....+|+|+|..|||+++..|||.+.+...+.+.+||.+||| |||||++.|
T Consensus 176 l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQt--yEGG~GG~P----------- 242 (423)
T KOG0365|consen 176 LYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQT--YEGGFGGEP----------- 242 (423)
T ss_pred HHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhccc--ccCCcCCCc-----------
Confidence 9999999999999999999999999999999999999998877788999999999999 999887754
Q ss_pred cccccccccccccccc------CCcccCHHHHHHHHHHhcCC-CCCCCCCCCCCCCCchhhhHHHHhHHhhccCC
Q 023444 170 EISSQGDEHCHFQHRE------REPLFHSIALQRYLLLCSQD-PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW 237 (282)
Q Consensus 170 ~~~~~~~~~~~f~~~~------~~~l~~~~~l~~~iL~~~Q~-~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~ 237 (282)
|.|+|+||||+... ....+|.++|.+| ...||. .+|||+||+||++|.|||||++|...|++...
T Consensus 243 --~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W-~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~ 314 (423)
T KOG0365|consen 243 --GVEAHGGYTFCALAALALLNEMDQLNLEKLLEW-AVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFY 314 (423)
T ss_pred --cccccCCeeHHHHHHHHHHhhhhhhCHHHHHHH-HHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHh
Confidence 67999999995422 2356789999999 557897 47999999999999999999999999998744
No 19
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-43 Score=315.76 Aligned_cols=212 Identities=20% Similarity=0.273 Sum_probs=184.5
Q ss_pred CcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC-C--C-----CcccCC----------CCCCCchhHHHHHHHH
Q 023444 14 GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT-Y--E-----GGIAGE----------PGSEAHGGYTFCGLAA 75 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~-~--d-----GGF~~~----------p~~esh~~~TycAl~~ 75 (282)
..+++..+|+|+++|++|+.++..+++.+++||++-|. + + -||.+. +.+++|+++||+++++
T Consensus 35 d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~ 114 (347)
T KOG0367|consen 35 DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLAC 114 (347)
T ss_pred ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999984 2 1 267652 4568999999999999
Q ss_pred HHHhcc-CCcccHHHHHHHHHHcCCCCccccccc-CCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCC
Q 023444 76 MILINE-ADRLDLDALIGWVVFRQGVEGGFQGRT-NKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 153 (282)
Q Consensus 76 L~lLg~-~~~id~~~~~~wl~~~Q~~dGGF~gr~-~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg 153 (282)
|.+||. +.++|++.+++++..+|++||+|.... ++|+|+||.|||+++++||+.+..+|+++++.||++||+ ||||
T Consensus 115 L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~--YdgG 192 (347)
T KOG0367|consen 115 LVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQR--YDGG 192 (347)
T ss_pred HHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhc--cccc
Confidence 999995 678999999999999999999998665 679999999999999999999999999999999999999 9999
Q ss_pred ccccCCCCCCCCCCCCccccccccccccccc-------cC--Ccc---cCHHHHHHHHHHhcCCCCCCCCCCCCCCCCch
Q 023444 154 QTTTASDVSEGDGSSDEISSQGDEHCHFQHR-------ER--EPL---FHSIALQRYLLLCSQDPRGGLRDKLRKPRDYY 221 (282)
Q Consensus 154 ~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~-------~~--~~l---~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~c 221 (282)
|++. +|.|+|+|+||++. ++ +.+ .+.+++++|++ .||...|||+|||||++|+|
T Consensus 193 fg~~-------------pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli-~RQ~~sgGfqGR~NKp~DTC 258 (347)
T KOG0367|consen 193 FGQH-------------PGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLI-QRQVSSGGFQGRTNKPVDTC 258 (347)
T ss_pred cccC-------------CCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHH-HHhhccCCcCCCCCCCchhH
Confidence 9874 46788999999432 22 222 23588999965 78999999999999999999
Q ss_pred hhhHHHHhHHhhccCCCCCC
Q 023444 222 HTCYCLSGLSICQHSWLKDE 241 (282)
Q Consensus 222 yS~w~la~Lsll~~~~~~~~ 241 (282)
|+||++|+|.||+..|+.+.
T Consensus 259 YaFWigasLklL~~~~~~d~ 278 (347)
T KOG0367|consen 259 YAFWIGASLKLLDADWLIDK 278 (347)
T ss_pred HHHHHHHHHHHccchHhhhH
Confidence 99999999999999886543
No 20
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.6e-40 Score=304.99 Aligned_cols=209 Identities=21% Similarity=0.306 Sum_probs=185.4
Q ss_pred CCCcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc-CCCCcccCCCCCCCchhHHHHHHHHHHHhcc--CCcccH
Q 023444 12 DAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQ-TYEGGIAGEPGSEAHGGYTFCGLAAMILINE--ADRLDL 87 (282)
Q Consensus 12 ~~ge~d~r~~y~av~~l~lL~~-~~~~~~~~~~~~I~scq-~~dGGF~~~p~~esh~~~TycAl~~L~lLg~--~~~id~ 87 (282)
....+++..+||+++++.+|+. +..++++++++||++|| ++||||+..++.++|+..||+|+.+|.+++. .+.+|+
T Consensus 21 ~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~ 100 (286)
T cd02890 21 SLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDR 100 (286)
T ss_pred hHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhH
Confidence 4456899999999999999998 66789999999999999 9999999999999999999999999999998 577899
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCC
Q 023444 88 DALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGS 167 (282)
Q Consensus 88 ~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~ 167 (282)
+++++||.++|+++|||.++++++.|+|++||+++++.+|+....++.+++++|+.+||+ .||||+..|
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~--~dGGf~~~~--------- 169 (286)
T cd02890 101 EKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQN--YDGGFGGVP--------- 169 (286)
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCC--CCCCcCCCC---------
Confidence 999999999999999999999999999999999999999998776788999999999999 999887643
Q ss_pred CCcccccccccccccc------ccCCcccCHHHHHHHHHHhcCCCCC-CCCCCCCCCCCchhhhHHHHhHHhhccC
Q 023444 168 SDEISSQGDEHCHFQH------REREPLFHSIALQRYLLLCSQDPRG-GLRDKLRKPRDYYHTCYCLSGLSICQHS 236 (282)
Q Consensus 168 s~~~~~~~~~~~~f~~------~~~~~l~~~~~l~~~iL~~~Q~~~G-Gf~grp~k~~D~cyS~w~la~Lsll~~~ 236 (282)
+.++|+++||.. .......+.+++++||+. ||...| ||+|||+|.||+|||||++++|++++..
T Consensus 170 ----~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~-~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~ 240 (286)
T cd02890 170 ----GAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE-RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRL 240 (286)
T ss_pred ----CCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH-hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccc
Confidence 345688888732 112246789999999775 576665 9999999999999999999999999975
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.89 E-value=1.2e-22 Score=181.74 Aligned_cols=217 Identities=20% Similarity=0.193 Sum_probs=171.4
Q ss_pred CCCCCCCeeecCCC-cchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCCCC-------CCchhHH
Q 023444 1 MKDPSGAFRMHDAG-EIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGS-------EAHGGYT 69 (282)
Q Consensus 1 ~~~~dG~F~~~~~g-e~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p~~-------esh~~~T 69 (282)
+|++||+|...... ++|+..|++++.+|..++. ......+++++||.++|++||||...... +++...|
T Consensus 64 ~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t 143 (300)
T cd00688 64 YQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLT 143 (300)
T ss_pred ccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHH
Confidence 47899999987666 8999999999999999986 35677899999999999999999976543 7899999
Q ss_pred HHHHHHHHHhccCC-cccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccc
Q 023444 70 FCGLAAMILINEAD-RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAEC 148 (282)
Q Consensus 70 ycAl~~L~lLg~~~-~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~ 148 (282)
++++.+|.+++... ..+++++++||.++|+++||| +++.+.|+..++|++.+|.+++.......+++++|++++|+
T Consensus 144 ~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~- 220 (300)
T cd00688 144 AYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQR- 220 (300)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcC-
Confidence 99999999999754 456889999999999999999 77889999999999999999986433355778899999998
Q ss_pred cCCCCccccCCCCCCCCCCCCcccccccccccc-----cc-c-cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCch
Q 023444 149 SIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF-----QH-R-EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYY 221 (282)
Q Consensus 149 ~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f-----~~-~-~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~c 221 (282)
.+|++......+ ..+.+...++ +. . ........+++.+||+ .+|.++|||..+|.+.+|++
T Consensus 221 -~~g~~~~~~~~~----------~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~-~~q~~~G~w~~~~~~~~~~~ 288 (300)
T cd00688 221 -PDGGWGEGRDRT----------NKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLL-SQQNEDGGFSSKPGKSYDTQ 288 (300)
T ss_pred -CCCCcCccccCC----------CCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHH-hccCCCCCcCcCCCCCCcch
Confidence 788765432100 0011111111 11 1 0012345678999965 56888999999999999999
Q ss_pred hhhHHHHhHHh
Q 023444 222 HTCYCLSGLSI 232 (282)
Q Consensus 222 yS~w~la~Lsl 232 (282)
||+|++.+|+.
T Consensus 289 ~t~~al~aL~~ 299 (300)
T cd00688 289 HTVFALLALSL 299 (300)
T ss_pred hhHHHHHHHhc
Confidence 99999999975
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.74 E-value=2.9e-17 Score=146.82 Aligned_cols=222 Identities=19% Similarity=0.150 Sum_probs=161.8
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCCCCcccCCCCC-CCchhHHHHHHH
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNI------LDDELLQNVGNYILSCQTYEGGIAGEPGS-EAHGGYTFCGLA 74 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~------~~~~~~~~~~~~I~scq~~dGGF~~~p~~-esh~~~TycAl~ 74 (282)
+.+||++.... ....+..+++++..+..+.. .....+++.++||.++|++||||+..++. +++...|+.++.
T Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~ 90 (300)
T cd00688 12 PYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALK 90 (300)
T ss_pred cccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHH
Confidence 34566663322 34577778888888777764 23567899999999999999999998877 899999999999
Q ss_pred HHHHhccC---CcccHHHHHHHHHHcCCCCcccccccCC-------CCCchhhhHHHHHHHHhhhhh-cccCCCCCcccc
Q 023444 75 AMILINEA---DRLDLDALIGWVVFRQGVEGGFQGRTNK-------LVDGCYSFWQGGVFALLRRFH-SIIGESPTPVDQ 143 (282)
Q Consensus 75 ~L~lLg~~---~~id~~~~~~wl~~~Q~~dGGF~gr~~~-------e~D~~ysy~a~a~l~lL~~~~-~i~~~~~~~~i~ 143 (282)
+|..++.. ....++++++||.++|+++|||...... ..|...+++++.+|.+++... ....+++..|+.
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~ 170 (300)
T cd00688 91 ALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLL 170 (300)
T ss_pred HHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 99999863 4456889999999999999999866543 789999999999999998743 234577889999
Q ss_pred cCccccCCCCccccCCCCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCC---CCCCCc
Q 023444 144 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL---RKPRDY 220 (282)
Q Consensus 144 ~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp---~k~~D~ 220 (282)
++|+ .||+| .+ ..++ +...-+.+...+...........+++++||+ .+|.++|||...+ .+.+|+
T Consensus 171 ~~q~--~~g~~--~~------~~~~-~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~-~~q~~~g~~~~~~~~~~~~~~~ 238 (300)
T cd00688 171 SCQN--YDGGF--GP------GGES-HGYGTACAAAALALLGDLDSPDAKKALRWLL-SRQRPDGGWGEGRDRTNKLSDS 238 (300)
T ss_pred HHhc--CCCCc--CC------Cccc-cHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhcCCCCCcCccccCCCCcCch
Confidence 9998 88877 11 0111 0000011111110000001233567899965 6788999999875 889999
Q ss_pred hhhhHHHHhHHhhccC
Q 023444 221 YHTCYCLSGLSICQHS 236 (282)
Q Consensus 221 cyS~w~la~Lsll~~~ 236 (282)
++|+|++.+|..++..
T Consensus 239 ~~~~~~~~aL~~~~~~ 254 (300)
T cd00688 239 CYTEWAAYALLALGKL 254 (300)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999988753
No 23
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.72 E-value=8.6e-18 Score=132.75 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=91.6
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCcccHHHH--HHHHHHcCCCCcccccccC-CCCCchhhhH
Q 023444 43 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDAL--IGWVVFRQGVEGGFQGRTN-KLVDGCYSFW 119 (282)
Q Consensus 43 ~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id~~~~--~~wl~~~Q~~dGGF~gr~~-~e~D~~ysy~ 119 (282)
|+||++||++||||+.. +.++++..|++||.+|..++... +++++ ++||.++|++||||...+. .++|+.++++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 89999999999999999999754 58889 9999999999999999985 5789999999
Q ss_pred HHHHHHHhhhhhc-ccCCCCCcccccCccccCCCCcc
Q 023444 120 QGGVFALLRRFHS-IIGESPTPVDQRGAECSIDNTQT 155 (282)
Q Consensus 120 a~a~l~lL~~~~~-i~~~~~~~~i~~c~~~~~dGg~~ 155 (282)
++..+.+++.... ...+++++||++||+ .||||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~--~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQN--PDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB---TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcC--CCCCCC
Confidence 9999999987653 456889999999999 899764
No 24
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.70 E-value=4.3e-17 Score=128.75 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=86.0
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHhccCCCCcccCCC-CCCCchhHHHHHHHHHH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV--GNYILSCQTYEGGIAGEP-GSEAHGGYTFCGLAAMI 77 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~--~~~I~scq~~dGGF~~~p-~~esh~~~TycAl~~L~ 77 (282)
.|++||||... +.++++..|++|+.+|..++... +++++ ++||.++|++||||+..+ +.++|+..|++++++|.
T Consensus 7 ~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~ 83 (113)
T PF13249_consen 7 RQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALE 83 (113)
T ss_dssp HB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHH
T ss_pred HcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHH
Confidence 38999999987 88999999999999999998643 58888 999999999999999999 67899999999999999
Q ss_pred HhccCCc-ccHHHHHHHHHHcCCCCcccc
Q 023444 78 LINEADR-LDLDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 78 lLg~~~~-id~~~~~~wl~~~Q~~dGGF~ 105 (282)
+++..+. ..+++.++||+++|++||||+
T Consensus 84 ~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 84 LLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9997653 567889999999999999996
No 25
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.43 E-value=1.8e-12 Score=121.43 Aligned_cols=219 Identities=17% Similarity=0.118 Sum_probs=141.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcc--------------CCCCcccCCCCC--
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI--LDDELLQNVGNYILSCQ--------------TYEGGIAGEPGS-- 62 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~--~~~~~~~~~~~~I~scq--------------~~dGGF~~~p~~-- 62 (282)
.|++||+|.... +++..|..++.+|...+. ......++.++||.+.| .++||++.....
T Consensus 11 ~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~ 87 (348)
T cd02889 11 LQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQG 87 (348)
T ss_pred hccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCC
Confidence 389999998654 899999999999988876 34467889999999999 688887754322
Q ss_pred CCchhHHHHHHHHHHHhccCC----cc---cHHHHHHHHHHcCCCCcccccccC-------------------CCCCchh
Q 023444 63 EAHGGYTFCGLAAMILINEAD----RL---DLDALIGWVVFRQGVEGGFQGRTN-------------------KLVDGCY 116 (282)
Q Consensus 63 esh~~~TycAl~~L~lLg~~~----~i---d~~~~~~wl~~~Q~~dGGF~gr~~-------------------~e~D~~y 116 (282)
.++...|-.++.+|..++... .+ .+++.++||.++|.+||||..... ...+...
T Consensus 88 ~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
T cd02889 88 YPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVEC 167 (348)
T ss_pred CCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcch
Confidence 234445655666666666542 12 357888999999999999974321 1234445
Q ss_pred hhHHHHHHHHhhhhhc-------ccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccccccccc-cc--ccC
Q 023444 117 SFWQGGVFALLRRFHS-------IIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF-QH--RER 186 (282)
Q Consensus 117 sy~a~a~l~lL~~~~~-------i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f-~~--~~~ 186 (282)
|-.++.+|..++.... ...+++.+|+.++|. .||+|... ++. + -.+.++-... +. ...
T Consensus 168 Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~--~dG~w~~~-----~~~--~---~~y~ta~a~~aL~~~g~~ 235 (348)
T cd02889 168 TGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQE--PDGSWYGR-----WGV--C---FIYGTWFALEALAAAGED 235 (348)
T ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCC--CCCCcccc-----CCC--c---chHHHHHHHHHHHHcCCC
Confidence 5666666666665322 123567889999998 78876321 111 0 0111111000 11 110
Q ss_pred CcccCHHHHHHHHHHhcCCCCCCCCCC----------CCCCCCchhhhHHHHhHHhhcc
Q 023444 187 EPLFHSIALQRYLLLCSQDPRGGLRDK----------LRKPRDYYHTCYCLSGLSICQH 235 (282)
Q Consensus 187 ~~l~~~~~l~~~iL~~~Q~~~GGf~gr----------p~k~~D~cyS~w~la~Lsll~~ 235 (282)
......+++.+|++ .+|.++|||... ++..+|+..|.|++-+|...+.
T Consensus 236 ~~~~~~~~~~~~L~-~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~ 293 (348)
T cd02889 236 ENSPYVRKACDWLL-SKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGE 293 (348)
T ss_pred cCcHHHHHHHHHHH-HccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCC
Confidence 11123467889966 568899999763 3456799999999999987654
No 26
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.42 E-value=2.6e-13 Score=91.03 Aligned_cols=44 Identities=39% Similarity=0.805 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 37 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 37 ~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
++++++++||++||++||||++.|+.++|+.+||||+++|+|||
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999986
No 27
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.42 E-value=1.5e-13 Score=92.13 Aligned_cols=44 Identities=32% Similarity=0.648 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhh
Q 023444 85 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLR 128 (282)
Q Consensus 85 id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~ 128 (282)
||++++++||.++|++||||++++++++|++||||++++|+||+
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999985
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.34 E-value=5e-12 Score=118.52 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=114.7
Q ss_pred CCCCCCCeeecCC-------------------CcchHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccCCCC
Q 023444 1 MKDPSGAFRMHDA-------------------GEIDVRACYTAISVASILNILDD-------ELLQNVGNYILSCQTYEG 54 (282)
Q Consensus 1 ~~~~dG~F~~~~~-------------------ge~d~r~~y~av~~l~lL~~~~~-------~~~~~~~~~I~scq~~dG 54 (282)
.|++||+|..... .++++..|-.++.+|..++...+ ...++.++||.++|++||
T Consensus 129 ~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG 208 (348)
T cd02889 129 MQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDG 208 (348)
T ss_pred hccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3789999974321 23567788889999888876432 346788999999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHhccC-CcccHHHHHHHHHHcCCCCccccccc----------CCCCCchhhhHHHHH
Q 023444 55 GIAGEPGSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGV 123 (282)
Q Consensus 55 GF~~~p~~esh~~~TycAl~~L~lLg~~-~~id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~ysy~a~a~ 123 (282)
||.+.. ...+...|..++.+|..+|.. ....+++.++||.++|.+||||.... ....|+..|.+++-.
T Consensus 209 ~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~a 287 (348)
T cd02889 209 SWYGRW-GVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLA 287 (348)
T ss_pred CccccC-CCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHH
Confidence 986533 235666788888888888863 33467899999999999999997532 345677777777776
Q ss_pred HHHhhhhhcccCCCCCcccccCccccCCCCccccC
Q 023444 124 FALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTA 158 (282)
Q Consensus 124 l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~ 158 (282)
|...+.......+++..|+.++|+ .||||.+..
T Consensus 288 L~~~g~~~~~~v~~a~~wL~~~Q~--~dG~f~~~~ 320 (348)
T cd02889 288 LMAAGEPDSEAVKRGVKYLLNTQQ--EDGDWPQEE 320 (348)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhcC--CCCCcCCce
Confidence 666554434455777899999999 999887643
No 29
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.29 E-value=2.1e-11 Score=124.02 Aligned_cols=200 Identities=16% Similarity=0.078 Sum_probs=123.6
Q ss_pred CCCCeeec--CCCcchHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhccCCCCcccCC-CC------------
Q 023444 4 PSGAFRMH--DAGEIDVRACYTAISVASILNILD-------DELLQNVGNYILSCQTYEGGIAGE-PG------------ 61 (282)
Q Consensus 4 ~dG~F~~~--~~ge~d~r~~y~av~~l~lL~~~~-------~~~~~~~~~~I~scq~~dGGF~~~-p~------------ 61 (282)
+.|||... ..+.+|+-.|-.++.++..++... ....++.++||++||++||||... +.
T Consensus 358 ~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~ 437 (634)
T cd02892 358 RKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPF 437 (634)
T ss_pred CCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCch
Confidence 35777543 344555656777777777776432 245678899999999999999842 11
Q ss_pred --------CCCchhHHHHHHHHHHHhccCCcc-------cHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHH
Q 023444 62 --------SEAHGGYTFCGLAAMILINEADRL-------DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 126 (282)
Q Consensus 62 --------~esh~~~TycAl~~L~lLg~~~~i-------d~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~l 126 (282)
..++...|..+|.+|.+++..... -+++.++||.+.|++||||-++- +...+..+++++..|..
T Consensus 438 e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~ 516 (634)
T cd02892 438 EDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAA 516 (634)
T ss_pred hhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHH
Confidence 136677899999999998864321 26789999999999999997653 33323334445555555
Q ss_pred hhhh--hcccCCCCCcccccCccccCCCCccccCCCC---CCCCCCCCcccccccccccc---cccc-CC--cccCHHHH
Q 023444 127 LRRF--HSIIGESPTPVDQRGAECSIDNTQTTTASDV---SEGDGSSDEISSQGDEHCHF---QHRE-RE--PLFHSIAL 195 (282)
Q Consensus 127 L~~~--~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~---~~g~~~s~~~~~~~~~~~~f---~~~~-~~--~l~~~~~l 195 (282)
.+.. .....+++.+|++++|+ .||||+..+... .+ .+ +...+...|. +.+. .. .....++.
T Consensus 517 ~G~~~~~~~~i~~a~~~L~s~Q~--~DGgWge~~~s~~~~~~--~~----~~~s~~~~TA~AllaLl~~g~~~~~~i~r~ 588 (634)
T cd02892 517 AGEDYENSPYIRKACDFLLSKQN--PDGGWGESYLSYEDKSY--AG----GGRSTVVQTAWALLALMAAGEPDSEAVERG 588 (634)
T ss_pred hCCcccCcHHHHHHHHHHHhcCC--CCCCCCCccccccCccc--CC----CCCCcHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 5532 11234577889999999 899876543211 00 00 0111222222 1110 11 11224567
Q ss_pred HHHHHHhcCCCCCCCCCC
Q 023444 196 QRYLLLCSQDPRGGLRDK 213 (282)
Q Consensus 196 ~~~iL~~~Q~~~GGf~gr 213 (282)
++||+ .+|.++|||.-.
T Consensus 589 i~wL~-~~Q~~~G~w~~~ 605 (634)
T cd02892 589 IKYLL-NTQLPDGDWPQE 605 (634)
T ss_pred HHHHH-HcCCCCCCCCCc
Confidence 89955 679889998663
No 30
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.20 E-value=6.8e-11 Score=120.33 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=113.7
Q ss_pred CCCCCCCeeecCCC---------------------cchHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccCC
Q 023444 1 MKDPSGAFRMHDAG---------------------EIDVRACYTAISVASILNILDD-------ELLQNVGNYILSCQTY 52 (282)
Q Consensus 1 ~~~~dG~F~~~~~g---------------------e~d~r~~y~av~~l~lL~~~~~-------~~~~~~~~~I~scq~~ 52 (282)
+|++||+|...... .+.+-.|..++.+|.+++...+ ...++.++||+++|++
T Consensus 412 ~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~ 491 (634)
T cd02892 412 MQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEP 491 (634)
T ss_pred ccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCC
Confidence 58999999743211 2345568899999999876533 2477899999999999
Q ss_pred CCcccCCCCCCCchhHHHHHHHHHHHhccC--CcccHHHHHHHHHHcCCCCccccccc----------CCCCCchhhhHH
Q 023444 53 EGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQ 120 (282)
Q Consensus 53 dGGF~~~p~~esh~~~TycAl~~L~lLg~~--~~id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~ysy~a 120 (282)
||||.+.-+ ..+...|+.|+.+|...|.. ....+++.++||+++|++||||.... ..+.++..|-||
T Consensus 492 DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~A 570 (634)
T cd02892 492 DGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWA 570 (634)
T ss_pred CCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHH
Confidence 999965433 45666788899999988864 23467899999999999999996422 235667777777
Q ss_pred HHHHHHhhhhhcccCCCCCcccccCccccCCCCcccc
Q 023444 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTT 157 (282)
Q Consensus 121 ~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~ 157 (282)
+-+|...+..+....++.++|+.+.|+ .+|+|.+.
T Consensus 571 llaLl~~g~~~~~~i~r~i~wL~~~Q~--~~G~w~~~ 605 (634)
T cd02892 571 LLALMAAGEPDSEAVERGIKYLLNTQL--PDGDWPQE 605 (634)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHcCC--CCCCCCCc
Confidence 766655555444456677899999998 88977654
No 31
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.20 E-value=1.1e-10 Score=102.60 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=142.1
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cCCCCcccCC---------------------
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSC-QTYEGGIAGE--------------------- 59 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~sc-q~~dGGF~~~--------------------- 59 (282)
|++||||+...+-...+.-||.||.++.+|+... ..++++++|+.+. |+.-+||...
T Consensus 19 rhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~ev-Pr~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~ 97 (274)
T COG1689 19 RHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEV-PRKEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLF 97 (274)
T ss_pred hcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcC-chHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHH
Confidence 6899999987766666899999999999999754 5799999999984 5554554420
Q ss_pred ----C---------------CCCCchhHHHHHHHHHHHhccCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHH
Q 023444 60 ----P---------------GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120 (282)
Q Consensus 60 ----p---------------~~esh~~~TycAl~~L~lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a 120 (282)
| +...-+..||+.-.+|.+.|.. -.|.+.+||.+-|+.+|++.+---+-..+..+|-|
T Consensus 98 ~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~a 174 (274)
T COG1689 98 LKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQA 174 (274)
T ss_pred hhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccccccCCcchHHHHHH
Confidence 0 1122366788888888777742 13678889998898888888877788899999998
Q ss_pred HHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccccccccc--ccccCCcccCHHHHHHH
Q 023444 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF--QHREREPLFHSIALQRY 198 (282)
Q Consensus 121 ~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f--~~~~~~~l~~~~~l~~~ 198 (282)
.-++..++. .+.+..|-.+|. .+|||...|-+. |+ .-|. .-+.+ +.+.. ......+.++|
T Consensus 175 ly~l~~k~~-----~~~v~~Fe~~c~---~~Ggf~~~P~sy-----PP---YiE~-t~ya~r~lelL~-~k~~i~~~~rF 236 (274)
T COG1689 175 LYTLGSKGP-----KEEVRHFELCCG---DWGGFTEVPNSY-----PP---YIEP-TFYALRGLELLG-GKYCISDHIRF 236 (274)
T ss_pred HHhhccccc-----hHHHHhHHhccc---cCCCcccCCCCC-----CC---ccch-HHHHHhHHHHHc-cCcCchHHHHH
Confidence 877766653 344555666666 489888776321 11 1010 00001 11100 11223457799
Q ss_pred HHHhcCCCCCCCCCCCCC-CCCchhhhHHHHhHHhhc
Q 023444 199 LLLCSQDPRGGLRDKLRK-PRDYYHTCYCLSGLSICQ 234 (282)
Q Consensus 199 iL~~~Q~~~GGf~grp~k-~~D~cyS~w~la~Lsll~ 234 (282)
|.+ -|+++|||+..-.- -+-.-+||++++.|..|.
T Consensus 237 I~s-lqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 237 IRS-LQNQNGGFRRSYELGISTFENTYRALASLASLH 272 (274)
T ss_pred HHH-hhcCCCCeeeeEeccccchHHHHHHHHHHHHHh
Confidence 764 59999999987644 356778888998888763
No 32
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.17 E-value=1.1e-10 Score=118.67 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=111.3
Q ss_pred CCCCCCCeeecCC---------------------CcchHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHhccC
Q 023444 1 MKDPSGAFRMHDA---------------------GEIDVRACYTAISVASILNILDD--------ELLQNVGNYILSCQT 51 (282)
Q Consensus 1 ~~~~dG~F~~~~~---------------------ge~d~r~~y~av~~l~lL~~~~~--------~~~~~~~~~I~scq~ 51 (282)
|||+||||..... +.+.+-.|=.+|.+|..++...+ ...++.++||++.|+
T Consensus 412 ~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~ 491 (634)
T TIGR03463 412 RQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR 491 (634)
T ss_pred hcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC
Confidence 6999999984321 22344445556666666554322 235788999999999
Q ss_pred CCCcccCCCCCCCchhHHHHHHHHHHHhccC-CcccHHHHHHHHHHcCCCCccccccc----------CCCCCchhhhHH
Q 023444 52 YEGGIAGEPGSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQ 120 (282)
Q Consensus 52 ~dGGF~~~p~~esh~~~TycAl~~L~lLg~~-~~id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~ysy~a 120 (282)
+||||.+.-+ ......|++|+.+|...|.. +...+++.++||+++|++|||+..+. ..+.++--|.||
T Consensus 492 ~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~A 570 (634)
T TIGR03463 492 EDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWA 570 (634)
T ss_pred CCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHH
Confidence 9999976433 33455789999999988863 33457899999999999999997542 345777889999
Q ss_pred HHHHHHhhhhhcccCCCCCcccccCccccCCCCccc
Q 023444 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTT 156 (282)
Q Consensus 121 ~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~ 156 (282)
+..|...+.......++.++|+++.|+ .||++..
T Consensus 571 l~aL~~~g~~~~~~i~rgi~~L~~~Q~--~dG~W~~ 604 (634)
T TIGR03463 571 LLALAEAGEGGHDAVQRGVAWLRSRQQ--EDGRWPR 604 (634)
T ss_pred HHHHHHcCCcCCHHHHHHHHHHHHhCC--CCCCCCC
Confidence 999988775544445678899999998 7886654
No 33
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.15 E-value=1.7e-10 Score=117.42 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=90.9
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCCCCcccCC----------CCCCCchhHH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGE----------PGSEAHGGYT 69 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~-~~~~~~~~~~~I~scq~~dGGF~~~----------p~~esh~~~T 69 (282)
.|++||||.. ..|......|++|+.+|..++.. +....++.++||+++|++|||++.. ++.+++...|
T Consensus 489 ~Q~~dGsW~g-~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~T 567 (634)
T TIGR03463 489 RQREDGSFPG-SWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMT 567 (634)
T ss_pred hcCCCCCccc-cCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHH
Confidence 4899999975 45677888999999999998863 4466889999999999999999863 4558999999
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHcCCCCccccccc
Q 023444 70 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT 108 (282)
Q Consensus 70 ycAl~~L~lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr~ 108 (282)
.+||.+|...|..+...+++.++||+++|.+|||+...+
T Consensus 568 A~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 568 SWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 999999999987666668899999999999999987543
No 34
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.05 E-value=6e-10 Score=97.88 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCcccHHHHHHHHHH-cCCCCcccc--------
Q 023444 35 DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF-RQGVEGGFQ-------- 105 (282)
Q Consensus 35 ~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id~~~~~~wl~~-~Q~~dGGF~-------- 105 (282)
++++++++++||...|+.||||.-...-...+.-||.||.++.+||.. ...+|++++||.+ .|+.-+||.
T Consensus 4 ~~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e-vPr~EktiefL~d~~qt~~~~~a~~~~~l~~ 82 (274)
T COG1689 4 RYINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE-VPRKEKTIEFLYDQMQTAGVGVAMAIEFLRI 82 (274)
T ss_pred hhhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc-CchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 467899999999999999999997766666689999999999999963 3468999999987 344333332
Q ss_pred ------------------------------cccC--CCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCC
Q 023444 106 ------------------------------GRTN--KLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 153 (282)
Q Consensus 106 ------------------------------gr~~--~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg 153 (282)
|... ...-.+-+||+...+.+.+.- ..|.+.++|++.++ -+|+
T Consensus 83 lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~r--e~~~ 157 (274)
T COG1689 83 LGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVR--EFGI 157 (274)
T ss_pred hcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhh--hhcc
Confidence 1111 112356899999999998831 23445556666665 2222
Q ss_pred ccccCCCCCCCCCCCCccccccccccccc-cccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCC-CCCchhhhHHHHhHH
Q 023444 154 QTTTASDVSEGDGSSDEISSQGDEHCHFQ-HREREPLFHSIALQRYLLLCSQDPRGGLRDKLRK-PRDYYHTCYCLSGLS 231 (282)
Q Consensus 154 ~~~~~~~~~~g~~~s~~~~~~~~~~~~f~-~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k-~~D~cyS~w~la~Ls 231 (282)
+ .+||.+-+ -+ -.+|. ...+..+.-.+..+.|-++| ...|||+..|+. ||-.--|||++.+|.
T Consensus 158 -g-----~~YGv~~p---nt----~~t~~aly~l~~k~~~~~v~~Fe~~c--~~~Ggf~~~P~syPPYiE~t~ya~r~le 222 (274)
T COG1689 158 -G-----DAYGVTHP---NT----TMTYQALYTLGSKGPKEEVRHFELCC--GDWGGFTEVPNSYPPYIEPTFYALRGLE 222 (274)
T ss_pred -c-----cccccCCc---ch----HHHHHHHHhhccccchHHHHhHHhcc--ccCCCcccCCCCCCCccchHHHHHhHHH
Confidence 1 15665521 00 11121 11122334456778886643 348999999998 568889999999999
Q ss_pred hhccCC
Q 023444 232 ICQHSW 237 (282)
Q Consensus 232 ll~~~~ 237 (282)
||+...
T Consensus 223 lL~~k~ 228 (274)
T COG1689 223 LLGGKY 228 (274)
T ss_pred HHccCc
Confidence 999874
No 35
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.02 E-value=7.6e-09 Score=105.36 Aligned_cols=175 Identities=16% Similarity=0.150 Sum_probs=118.8
Q ss_pred CCCCeeec--CCCcchHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhccCCCCcccCCCC----------------
Q 023444 4 PSGAFRMH--DAGEIDVRACYTAISVASILNILD----DELLQNVGNYILSCQTYEGGIAGEPG---------------- 61 (282)
Q Consensus 4 ~dG~F~~~--~~ge~d~r~~y~av~~l~lL~~~~----~~~~~~~~~~I~scq~~dGGF~~~p~---------------- 61 (282)
+.|||... ..+.+|+--|-.++.+|..++..+ ....++.++||+++|+.||||+....
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~ 443 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFG 443 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccc
Confidence 35777654 455688888888888888775322 24677889999999999999975221
Q ss_pred ---CCCchhHHHHHHHHHHHhccCC-cccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCC
Q 023444 62 ---SEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGES 137 (282)
Q Consensus 62 ---~esh~~~TycAl~~L~lLg~~~-~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~ 137 (282)
..+....|-.++.+|...+... ..-+++.++||.+.|++|||+-|+ ++ .||+|....++..|..... ..
T Consensus 444 ~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~-wg---~~~~Y~T~~al~aL~~~g~-~~-- 516 (635)
T TIGR01507 444 AVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGR-WG---VNYLYGTGAVLSALKAVGI-DT-- 516 (635)
T ss_pred cccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccC-CC---CccccHHHHHHHHHHHcCC-Cc--
Confidence 1245556777777777766321 223678999999999999998666 33 4788877766666653210 00
Q ss_pred CCcccccCccccCCCCccccCCCCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCC----
Q 023444 138 PTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDK---- 213 (282)
Q Consensus 138 ~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~gr---- 213 (282)
.--..++..+||++ +|.++||+...
T Consensus 517 --------------------------------------------------~~~~i~rAv~wL~~-~Q~~DGGWge~~~sy 545 (635)
T TIGR01507 517 --------------------------------------------------REPYIQKALAWLES-HQNPDGGWGEDCRSY 545 (635)
T ss_pred --------------------------------------------------ccHHHHHHHHHHHH-hcCCCCCCCCCCccc
Confidence 00012456789664 58889998632
Q ss_pred ------CCCCCCchhhhHHHHhHHhhccC
Q 023444 214 ------LRKPRDYYHTCYCLSGLSICQHS 236 (282)
Q Consensus 214 ------p~k~~D~cyS~w~la~Lsll~~~ 236 (282)
.....|+..|.|++.+|...+..
T Consensus 546 ~~~~~~g~g~s~~s~TA~AL~AL~~ag~~ 574 (635)
T TIGR01507 546 EDPAYAGKGASTASQTAWALIALIAAGRA 574 (635)
T ss_pred ccccccCCCCCcHHHHHHHHHHHHHhCCC
Confidence 11257999999999999887654
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.01 E-value=1.2e-09 Score=110.86 Aligned_cols=154 Identities=17% Similarity=0.114 Sum_probs=109.7
Q ss_pred CCCCCCCeeecCCC---------------------cchHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHhccCCCCcc
Q 023444 1 MKDPSGAFRMHDAG---------------------EIDVRACYTAISVASILNIL-D--DELLQNVGNYILSCQTYEGGI 56 (282)
Q Consensus 1 ~~~~dG~F~~~~~g---------------------e~d~r~~y~av~~l~lL~~~-~--~~~~~~~~~~I~scq~~dGGF 56 (282)
+||+||||...... .+..-.|-.++.+|..++.. + ....++.++||+++|++||+|
T Consensus 400 ~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw 479 (621)
T TIGR01787 400 MQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSW 479 (621)
T ss_pred HcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCC
Confidence 59999999743211 11123566777777766531 1 245788999999999999998
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhccCCc--ccHHHHHHHHHHcCCCCccccccc----------CCCCCchhhhHHHHHH
Q 023444 57 AGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVF 124 (282)
Q Consensus 57 ~~~p~~esh~~~TycAl~~L~lLg~~~~--id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~ysy~a~a~l 124 (282)
.+.-+. .....|.+++.+|..+|.... ..+++.++||+++|++|||+.... .+.+|+-.|-||+..|
T Consensus 480 ~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL 558 (621)
T TIGR01787 480 FGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMAL 558 (621)
T ss_pred cccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHH
Confidence 764332 334457778888888886432 347889999999999999997432 2367889999999888
Q ss_pred HHhhhhhcccCCCCCcccccCccccCCCCcccc
Q 023444 125 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTT 157 (282)
Q Consensus 125 ~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~ 157 (282)
...+.......++.++|+.++|+ .||++...
T Consensus 559 ~~ag~~~~~ai~rgv~~L~~~Q~--~dG~w~~~ 589 (621)
T TIGR01787 559 IAAGEADSEAIERGVKYLLETQR--PDGDWPQE 589 (621)
T ss_pred HHcCccchHHHHHHHHHHHHhCC--CCCCCCCc
Confidence 76665433345678899999998 78877654
No 37
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=98.93 E-value=4.5e-09 Score=107.02 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCCCCcccCC----------CCCCCchhHH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGE----------PGSEAHGGYT 69 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~-~~~~~~~~~~~I~scq~~dGGF~~~----------p~~esh~~~T 69 (282)
.|++||||.+ ..+..++..|.+++.+|...+.. .....++.++||+++|++||||+.. ..+++++..|
T Consensus 483 ~Q~~dG~W~g-~wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~T 561 (635)
T TIGR01507 483 EQEPDGSWFG-RWGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQT 561 (635)
T ss_pred ccCCCCCCcc-CCCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHH
Confidence 4899999854 35667788888888888877653 3456788999999999999999853 2258999999
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHcCCCCccccc
Q 023444 70 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 70 ycAl~~L~lLg~~~~id~~~~~~wl~~~Q~~dGGF~g 106 (282)
.+||.+|...+..+...+++.++||.++|++|||+.-
T Consensus 562 A~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e 598 (635)
T TIGR01507 562 AWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDE 598 (635)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999998876555688999999999999998853
No 38
>PLN02993 lupeol synthase
Probab=98.90 E-value=8.6e-09 Score=106.08 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCC---------------------CCCchhHHHHHHHHHHHhccCC------cc--cH
Q 023444 37 ELLQNVGNYILSCQTYEGGIAGEPG---------------------SEAHGGYTFCGLAAMILINEAD------RL--DL 87 (282)
Q Consensus 37 ~~~~~~~~~I~scq~~dGGF~~~p~---------------------~esh~~~TycAl~~L~lLg~~~------~i--d~ 87 (282)
....+.++||++.||.||||+..-. ..+..--|-.+|.+|.+++... .+ -+
T Consensus 513 ~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i 592 (763)
T PLN02993 513 EQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSI 592 (763)
T ss_pred HHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHH
Confidence 4466789999999999999986321 1244556777888888876421 12 25
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCC
Q 023444 88 DALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGS 167 (282)
Q Consensus 88 ~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~ 167 (282)
++.++||.+.|.+||||.|+ ++...+..|++++..|...+....
T Consensus 593 ~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~----------------------------------- 636 (763)
T PLN02993 593 EKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYN----------------------------------- 636 (763)
T ss_pred HHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCC-----------------------------------
Confidence 78999999999999999986 454444445555555544443100
Q ss_pred CCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCC------------CCCCCchhhhHHHHhHHhhcc
Q 023444 168 SDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL------------RKPRDYYHTCYCLSGLSICQH 235 (282)
Q Consensus 168 s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp------------~k~~D~cyS~w~la~Lsll~~ 235 (282)
.....++..+||++ +|.++||+.... +..+-++.|.|++-+|...+.
T Consensus 637 --------------------~~~~IrrAv~fLls-~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~ 695 (763)
T PLN02993 637 --------------------DCLAMRKGVHFLLT-IQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQ 695 (763)
T ss_pred --------------------CcHHHHHHHHHHHH-hcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCC
Confidence 00012455678664 477778776531 234677999999999987765
Q ss_pred C
Q 023444 236 S 236 (282)
Q Consensus 236 ~ 236 (282)
.
T Consensus 696 ~ 696 (763)
T PLN02993 696 A 696 (763)
T ss_pred C
Confidence 3
No 39
>PLN02993 lupeol synthase
Probab=98.90 E-value=6.7e-09 Score=106.87 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCCCCcccCCC------------CCCCch
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAGEP------------GSEAHG 66 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~--~~~~~~~~~~I~scq~~dGGF~~~p------------~~esh~ 66 (282)
.|++||||.+ ..|...+..|++|+.+|...+... ....++.++||+++|++|||++... +..|++
T Consensus 602 ~Q~~DGSW~G-~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~ 680 (763)
T PLN02993 602 KQTPDGSWYG-NWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNL 680 (763)
T ss_pred hcCCCCCccc-ccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCch
Confidence 4899999987 688889999999999999888752 2568899999999999999999742 346999
Q ss_pred hHHHHHHHHHHHhccCCc--ccHHHHHHHHHHcCCCCccccc
Q 023444 67 GYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 67 ~~TycAl~~L~lLg~~~~--id~~~~~~wl~~~Q~~dGGF~g 106 (282)
-.|-.|+.+|.-.|..+. .-+++-++||.++|.++|+|--
T Consensus 681 ~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 681 VQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred hhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCC
Confidence 999999999988876433 2367899999999999998753
No 40
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=98.90 E-value=6.8e-09 Score=105.50 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCCCCcccCCC----------CCCCchhH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAGEP----------GSEAHGGY 68 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~--~~~~~~~~~~I~scq~~dGGF~~~p----------~~esh~~~ 68 (282)
.|++||+|.+ .++.+.+..|.+++.+|..++... ....++.++||+++|++||||+... ..+||+..
T Consensus 472 ~Q~~DGsw~g-~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~ 550 (621)
T TIGR01787 472 EQRADGSWFG-RWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQ 550 (621)
T ss_pred hcCCCCCCcc-cCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHH
Confidence 3889999975 455566777888999999888642 2567889999999999999998542 24789999
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHcCCCCcccccc
Q 023444 69 TFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 69 TycAl~~L~lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr 107 (282)
|.+||.+|...+..+...+++.++||.++|++||||...
T Consensus 551 Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~ 589 (621)
T TIGR01787 551 TGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQE 589 (621)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCc
Confidence 999999998888655556889999999999999999744
No 41
>PLN03012 Camelliol C synthase
Probab=98.81 E-value=1.9e-08 Score=103.49 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccCCCCcccCCC------------CCCCch
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP------------GSEAHG 66 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~--~~~~~~~~~~~I~scq~~dGGF~~~p------------~~esh~ 66 (282)
.|++||||.+ ..+-.-+..|.+||.+|...+.. +..-.++.++||++.|++|||++.+- +..||+
T Consensus 602 ~Q~~DGsW~G-~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~ 680 (759)
T PLN03012 602 IQMLDGSWYG-NWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNL 680 (759)
T ss_pred hcCCCCCCcc-cccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcH
Confidence 4899999986 55556667999999999998864 22567889999999999999999743 346999
Q ss_pred hHHHHHHHHHHHhccCCc--ccHHHHHHHHHHcCCCCccccc
Q 023444 67 GYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 67 ~~TycAl~~L~lLg~~~~--id~~~~~~wl~~~Q~~dGGF~g 106 (282)
-.|.+|+.+|...|..+. .-+++-++||.++|.+||+|--
T Consensus 681 ~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 681 VQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCC
Confidence 999999999988886543 2468899999999999999853
No 42
>PLN03012 Camelliol C synthase
Probab=98.80 E-value=9.2e-08 Score=98.44 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCCC--------HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCc--ccHHHH
Q 023444 21 CYTAISVASILNILD--------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDAL 90 (282)
Q Consensus 21 ~y~av~~l~lL~~~~--------~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~--id~~~~ 90 (282)
|=.+|.+|.+++... ....++.++||++.|++|||+.++=+-. ..-.|.+||.+|...|.... .-+++-
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irra 644 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKG 644 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHH
Confidence 334566777665432 2246678999999999999999765432 22368888999988886321 347889
Q ss_pred HHHHHHcCCCCcccccccC------------CCCCchhhhHHHHHHH
Q 023444 91 IGWVVFRQGVEGGFQGRTN------------KLVDGCYSFWQGGVFA 125 (282)
Q Consensus 91 ~~wl~~~Q~~dGGF~gr~~------------~e~D~~ysy~a~a~l~ 125 (282)
++||++.|++|||...... +.+.+--|.||+-.|.
T Consensus 645 v~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi 691 (759)
T PLN03012 645 VHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLI 691 (759)
T ss_pred HHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999985431 2355567788776664
No 43
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.62 E-value=3e-08 Score=77.83 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=38.5
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILD-DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~-~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
|++||||... .+.++..+++++.++..++... ..-.++.++||+++|++||||+.. ...+...|-.++++|.+.+
T Consensus 12 Q~~dG~W~~~--~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~t~~~~~~l~~~~ 87 (109)
T PF13243_consen 12 QNPDGSWGYN--WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSMTAAAIAALALAG 87 (109)
T ss_dssp -------------------------------TS-SSBSSHHHHHHHHH---TTS--S-T--S--HHHHHHHHHHHHHHHH
T ss_pred cccccccccc--ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHHHHHHHHHHHHhC
Confidence 8999999754 2367888999998888887532 234678899999999999999977 3334556666777776665
Q ss_pred cC-CcccHHHHHHHHHHcCC
Q 023444 81 EA-DRLDLDALIGWVVFRQG 99 (282)
Q Consensus 81 ~~-~~id~~~~~~wl~~~Q~ 99 (282)
.. +....++.++||.+.|.
T Consensus 88 ~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 88 VYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp TT--HHHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHccC
Confidence 42 23347899999998875
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.47 E-value=1e-06 Score=81.75 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCC------------CCCCc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEP------------GSEAH 65 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p------------~~esh 65 (282)
+|++||||..-.....++..|-+++-+|...+. .++...++.++||.+.|++||+|...- +.+++
T Consensus 64 ~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~ 143 (297)
T cd02896 64 YRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGD 143 (297)
T ss_pred ccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCC
Confidence 488999998666668899999999998887764 344567788999999999999999642 11356
Q ss_pred hhHHHHHHHHHHHhccCC-------cccHHHHHHHHHHcCC
Q 023444 66 GGYTFCGLAAMILINEAD-------RLDLDALIGWVVFRQG 99 (282)
Q Consensus 66 ~~~TycAl~~L~lLg~~~-------~id~~~~~~wl~~~Q~ 99 (282)
+..|-.++.+|.-.+... ...+++.++||.+.|.
T Consensus 144 ~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~ 184 (297)
T cd02896 144 VSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP 184 (297)
T ss_pred ccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc
Confidence 666666666665554321 1245788999998875
No 45
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.39 E-value=4.5e-06 Score=77.05 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=72.6
Q ss_pred CCCCCCCeeecCC--CcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCC-C--------CCCCch
Q 023444 1 MKDPSGAFRMHDA--GEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGE-P--------GSEAHG 66 (282)
Q Consensus 1 ~~~~dG~F~~~~~--ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~-p--------~~esh~ 66 (282)
+|++||||..-.. ++++...|-+++.+|...+. .+....++.++||.+.|++||||... + +.+++.
T Consensus 61 ~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~ 140 (292)
T cd02897 61 YKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEV 140 (292)
T ss_pred ccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCc
Confidence 4899999975433 37899999999999887764 23456788999999999999999842 1 223455
Q ss_pred hHHHHHHHHHHHhccCC-cccHHHHHHHHHHcCC
Q 023444 67 GYTFCGLAAMILINEAD-RLDLDALIGWVVFRQG 99 (282)
Q Consensus 67 ~~TycAl~~L~lLg~~~-~id~~~~~~wl~~~Q~ 99 (282)
..|-.++.+|...|... ...+++.++||.+.+.
T Consensus 141 ~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 141 ALTAYVLIALLEAGLPSERPVVEKALSCLEAALD 174 (292)
T ss_pred chHHHHHHHHHhcCCccccHHHHHHHHHHHHhcc
Confidence 66777777777777532 2236788999998775
No 46
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.30 E-value=3.9e-06 Score=77.94 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHhCCC------CHHH-------HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILNIL------DDEL-------LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~------~~~~-------~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|..|...+=.|.++..|+.. .+.. .++-+..++++|++||||+.-++.+++...|-.++-+|....
T Consensus 16 ~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~ 95 (297)
T cd02896 16 GEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLAR 95 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHH
Confidence 577777777777777777642 1221 233455667899999999987777899999989999998876
Q ss_pred cCCccc---HHHHHHHHHHcCCCCcccccc
Q 023444 81 EADRLD---LDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 81 ~~~~id---~~~~~~wl~~~Q~~dGGF~gr 107 (282)
....+| +++.++||.++|.+||+|...
T Consensus 96 ~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~ 125 (297)
T cd02896 96 KYIPVDQNVICGSVNWLISNQKPDGSFQEP 125 (297)
T ss_pred HcCCCCHHHHHHHHHHHHhcCCCCCeeCCC
Confidence 543444 567889999999999999854
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.26 E-value=6.8e-07 Score=70.07 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=15.4
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCc-ccHHHHHHHHHHcCCCCcccccc
Q 023444 40 QNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 40 ~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~-id~~~~~~wl~~~Q~~dGGF~gr 107 (282)
+++++||++-|++|||+... .+.+...|++++.+|..++.... --+++.++||.++|++||||...
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~--~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYN--WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred cccccccccccccccccccc--ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 57899999999999999765 33678899999999998885321 23588999999999999999966
No 48
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.95 E-value=6.5e-05 Score=69.32 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=69.5
Q ss_pred CcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH-------hccCCCCcccCCCCC--CCchhHHHHHHHHHHHhcc
Q 023444 14 GEIDVRACYTAISVASILNI---LDDELLQNVGNYIL-------SCQTYEGGIAGEPGS--EAHGGYTFCGLAAMILINE 81 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~-------scq~~dGGF~~~p~~--esh~~~TycAl~~L~lLg~ 81 (282)
+|..|..++=.+.++..|.. +++..+++..+||. +.|++||||+.-+.. +++...|-.++-+|.....
T Consensus 16 ~Eq~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~ 95 (292)
T cd02897 16 GEQNMVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARP 95 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhc
Confidence 46666667777777776654 66666777777776 589999999865443 7888999888888887764
Q ss_pred CCccc---HHHHHHHHHHcCCCCcccc
Q 023444 82 ADRLD---LDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 82 ~~~id---~~~~~~wl~~~Q~~dGGF~ 105 (282)
...++ +++.++||.++|++||||.
T Consensus 96 ~~~v~~~~i~ra~~wL~~~Q~~dG~f~ 122 (292)
T cd02897 96 FIYIDENVLQQALTWLSSHQKSNGCFR 122 (292)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 32233 6788999999999999997
No 49
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.92 E-value=7.6e-05 Score=67.77 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=79.7
Q ss_pred cchHHHHHHHHHHHHHhCC---CCH-------HHHHHHHHHHHhccCCCCcccCCCCC-CCchhHHHHHHHHHHHhccCC
Q 023444 15 EIDVRACYTAISVASILNI---LDD-------ELLQNVGNYILSCQTYEGGIAGEPGS-EAHGGYTFCGLAAMILINEAD 83 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~~---~~~-------~~~~~~~~~I~scq~~dGGF~~~p~~-esh~~~TycAl~~L~lLg~~~ 83 (282)
|.-+...+-.+.+..++.. .++ ...++.+++|.++|++||||+.-++. +++...|-.++..|.......
T Consensus 17 EQ~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~ 96 (282)
T cd02891 17 EQTMSRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYI 96 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcC
Confidence 5555666666666666543 222 22456788999999999999988877 899999999999998766433
Q ss_pred ccc---HHHHHHHHHHcCCCCcccccccC---------CCCCchhhhHHHHHHHHhhh
Q 023444 84 RLD---LDALIGWVVFRQGVEGGFQGRTN---------KLVDGCYSFWQGGVFALLRR 129 (282)
Q Consensus 84 ~id---~~~~~~wl~~~Q~~dGGF~gr~~---------~e~D~~ysy~a~a~l~lL~~ 129 (282)
.++ +++.++||.+.|.++|+|..... ...+...+-+++.+|...+.
T Consensus 97 ~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~ 154 (282)
T cd02891 97 DVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGK 154 (282)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcc
Confidence 343 67888999999999999975432 12333445555555544443
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.90 E-value=7.3e-05 Score=67.90 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=74.7
Q ss_pred CCCCCCCeeecCCC-cchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCCC---------CCCchh
Q 023444 1 MKDPSGAFRMHDAG-EIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPG---------SEAHGG 67 (282)
Q Consensus 1 ~~~~dG~F~~~~~g-e~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p~---------~esh~~ 67 (282)
+|++||||..-++. +++...|-+++.+|...+. .++...++.++||.+.|.+||+|..... ..+...
T Consensus 61 ~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (282)
T cd02891 61 YQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVS 140 (282)
T ss_pred hcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcc
Confidence 58999999876665 8899999999999887653 2344578889999999999999986432 234456
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHcCC
Q 023444 68 YTFCGLAAMILINEADRLDLDALIGWVVFRQG 99 (282)
Q Consensus 68 ~TycAl~~L~lLg~~~~id~~~~~~wl~~~Q~ 99 (282)
.|-.++.+|...|......+++.++||.+.+.
T Consensus 141 ~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 141 LTAYVLIALAEAGKACDASIEKALAYLETQLD 172 (282)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHhcc
Confidence 67777777877776433456788999987664
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.60 E-value=0.00071 Score=61.20 Aligned_cols=96 Identities=10% Similarity=0.188 Sum_probs=64.4
Q ss_pred CCCCCCeeec-CCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCCCCcccCCCC---CCC----chhHHH
Q 023444 2 KDPSGAFRMH-DAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGEPG---SEA----HGGYTF 70 (282)
Q Consensus 2 ~~~dG~F~~~-~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~scq~~dGGF~~~p~---~es----h~~~Ty 70 (282)
|++||||... ...+++++.|=+++-.+...... ++...++.++||.+.|++||.|..... .+. +...+.
T Consensus 10 ~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~l 89 (246)
T PF07678_consen 10 RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIAL 89 (246)
T ss_dssp B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHH
T ss_pred CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeee
Confidence 7899999987 77889999999999999988765 345578889999999999999975321 111 223334
Q ss_pred HHHHHHHHhccC---------CcccHHHHHHHHHHc
Q 023444 71 CGLAAMILINEA---------DRLDLDALIGWVVFR 97 (282)
Q Consensus 71 cAl~~L~lLg~~---------~~id~~~~~~wl~~~ 97 (282)
.|...++|+... ....+++.++||.+.
T Consensus 90 TA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 90 TAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp HHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 444444454332 112356778888765
No 52
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=97.35 E-value=0.00062 Score=69.07 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccCCCCcccCC------------CCCCCch
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQTYEGGIAGE------------PGSEAHG 66 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~--~~~~~~~~~~~I~scq~~dGGF~~~------------p~~esh~ 66 (282)
+|.+|||+-+ .+|---+..|.+|+-++.-.+.. +-...++.++|+++-|++|||.+.+ .|..+++
T Consensus 601 ~Q~~DGSWyG-sWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~v 679 (760)
T KOG0497|consen 601 LQLPDGSWYG-SWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNV 679 (760)
T ss_pred cCCCCCcccc-hhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccc
Confidence 5899999987 56777788888898888887753 3456778899999999999999964 2457999
Q ss_pred hHHHHHHHHHHHhccCCcc--cHHHHHHHHHHcCCCCccccc
Q 023444 67 GYTFCGLAAMILINEADRL--DLDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 67 ~~TycAl~~L~lLg~~~~i--d~~~~~~wl~~~Q~~dGGF~g 106 (282)
..|-.|+.+|.+-|..++. -..+.++.|..+|.++|-|..
T Consensus 680 v~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq 721 (760)
T KOG0497|consen 680 VQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ 721 (760)
T ss_pred hhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence 9999999999999976543 678999999999999998863
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=96.75 E-value=0.003 Score=57.15 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=49.9
Q ss_pred HHhccCCCCcccCC-CCCCCchhHHHHHHHHHHHhccCCccc---HHHHHHHHHHcCCCCcccccc
Q 023444 46 ILSCQTYEGGIAGE-PGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 46 I~scq~~dGGF~~~-p~~esh~~~TycAl~~L~lLg~~~~id---~~~~~~wl~~~Q~~dGGF~gr 107 (282)
+++.|++||||+.. ...+++...|-.++-.|....+.-.|| +++.++||.++|++||+|...
T Consensus 6 ~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~ 71 (246)
T PF07678_consen 6 QLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEED 71 (246)
T ss_dssp HHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--S
T ss_pred HhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccC
Confidence 56788999999998 778999999999998888877764455 578899999999999999743
No 54
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=94.57 E-value=0.12 Score=52.92 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHH---HHHHHHHhccC--Cc
Q 023444 18 VRACYTAISVASILNILDD--------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFC---GLAAMILINEA--DR 84 (282)
Q Consensus 18 ~r~~y~av~~l~lL~~~~~--------~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~Tyc---Al~~L~lLg~~--~~ 84 (282)
+--|-.+|.+|......-+ ...++.++||.+.|.+||..-++-+ +..||. |+-.|.-.|.. .-
T Consensus 562 vEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc 637 (760)
T KOG0497|consen 562 VECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENC 637 (760)
T ss_pred cccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhcc
Confidence 3455667777777765432 1245678999999999998876554 445544 55555555542 12
Q ss_pred ccHHHHHHHHHHcCCCCccccccc------------CCCCCchhhhHHHHHHHHhhhhhcc--cCCCCCcccccCccccC
Q 023444 85 LDLDALIGWVVFRQGVEGGFQGRT------------NKLVDGCYSFWQGGVFALLRRFHSI--IGESPTPVDQRGAECSI 150 (282)
Q Consensus 85 id~~~~~~wl~~~Q~~dGGF~gr~------------~~e~D~~ysy~a~a~l~lL~~~~~i--~~~~~~~~i~~c~~~~~ 150 (282)
.-+++-++||++.|++|||-.-.. +.-..+--|.||+..|-+-++...+ -.++++..+...|. .
T Consensus 638 ~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~--~ 715 (760)
T KOG0497|consen 638 EAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQL--E 715 (760)
T ss_pred HHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhccc--c
Confidence 346789999999999999986332 2235566899999999888876543 44667777888887 4
Q ss_pred CCC
Q 023444 151 DNT 153 (282)
Q Consensus 151 dGg 153 (282)
+|.
T Consensus 716 nGd 718 (760)
T KOG0497|consen 716 NGD 718 (760)
T ss_pred cCC
Confidence 453
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=90.77 E-value=0.78 Score=45.98 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhccCCCCcccCCCCCC--------------CchhHH-----HHHHHHHHHhccC-C---cccHHHHHH
Q 023444 36 DELLQNVGNYILSCQTYEGGIAGEPGSE--------------AHGGYT-----FCGLAAMILINEA-D---RLDLDALIG 92 (282)
Q Consensus 36 ~~~~~~~~~~I~scq~~dGGF~~~p~~e--------------sh~~~T-----ycAl~~L~lLg~~-~---~id~~~~~~ 92 (282)
..+.+..++||...|+..|||...+-.. .|...+ -..+..|.-++.. + ...+++.++
T Consensus 280 ~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e 359 (517)
T COG1657 280 LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALE 359 (517)
T ss_pred hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHh
Confidence 4566779999999999999998643221 222111 1122333333321 2 345778999
Q ss_pred HHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCccc
Q 023444 93 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEIS 172 (282)
Q Consensus 93 wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~ 172 (282)
||++.|.++|..-|+- -.||.|=..+.+..+....... .
T Consensus 360 ~LL~~Q~~~GsW~g~w----~v~~iY~~s~a~~~l~~~g~~~---------------------------------~---- 398 (517)
T COG1657 360 WLLSDQEPDGSWYGRW----GVCYIYGTSGALSALALVGETD---------------------------------E---- 398 (517)
T ss_pred hhhhhccccCceeeEE----EEEEEEehhhhhhhhhccCccc---------------------------------c----
Confidence 9999999999887663 4678888888777776432110 0
Q ss_pred cccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhh
Q 023444 173 SQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTC 224 (282)
Q Consensus 173 ~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~ 224 (282)
...-..+++.|+ ..+|.++||+..--+..+|..|+.
T Consensus 399 ---------------~~~~v~~~~~~l-~~~~~~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 399 ---------------NEVLVRKLISWL-VSKQMPDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred ---------------chHHHHHHHHHh-hhccccCCCccccccccccccccc
Confidence 011235677884 456999999998777777766654
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=90.12 E-value=0.27 Score=49.21 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCCCCcccCCCC---------CCCch-hH
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAGEPG---------SEAHG-GY 68 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~--~~~~~~~~~~I~scq~~dGGF~~~p~---------~esh~-~~ 68 (282)
.|++||++.+ ..+..-+..+-.++.++.+.+..+ ..-..+++.|+.+||++|||++..-. .+++. -.
T Consensus 364 ~Q~~~GsW~g-~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~ 442 (517)
T COG1657 364 DQEPDGSWYG-RWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQ 442 (517)
T ss_pred hccccCceee-EEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcc
Confidence 4788999876 556666777778888888887654 23578899999999999999997432 22222 23
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHcCCCCcccccc
Q 023444 69 TFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 69 TycAl~~L~lLg~~~~id~~~~~~wl~~~Q~~dGGF~gr 107 (282)
|-.|+..+..-.....--.+..++++.+.|.++|.-..+
T Consensus 443 ~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 443 TNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred hhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence 333333332222221112456678889999887765544
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=90.09 E-value=0.75 Score=42.91 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHhCCC--C---HHHHHHHHHHHHhccCCCCcccCCC--CCCCchhHHHH---HHHHHHHhccC---
Q 023444 16 IDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEGGIAGEP--GSEAHGGYTFC---GLAAMILINEA--- 82 (282)
Q Consensus 16 ~d~r~~y~av~~l~lL~~~--~---~~~~~~~~~~I~scq~~dGGF~~~p--~~esh~~~Tyc---Al~~L~lLg~~--- 82 (282)
.|-..|+-.+.-|.-+-.. + ..-.++.++||++.|.++|||...- ...-|..-||+ .+.+|.+|...
T Consensus 41 iDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 41 IDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 3555666666555444221 1 2335678999999999999998632 11223333333 33444444321
Q ss_pred ----Ccc----------cHHHHHHHHHHcCCCCcccccc
Q 023444 83 ----DRL----------DLDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 83 ----~~i----------d~~~~~~wl~~~Q~~dGGF~gr 107 (282)
..+ -+++-++||++.|-.+||-.++
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~ 159 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV 159 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc
Confidence 111 1468899999999888776543
No 58
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=38 Score=38.43 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------ccCCCCcccCCCC--CCCchhHHHHHHHHHHHhccCCccc-
Q 023444 17 DVRACYTAISVASILNILDDELLQNVGNYILS-------CQTYEGGIAGEPG--SEAHGGYTFCGLAAMILINEADRLD- 86 (282)
Q Consensus 17 d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~s-------cq~~dGGF~~~p~--~esh~~~TycAl~~L~lLg~~~~id- 86 (282)
.+..++.++-=|...+.++++.+++..++|.. -+.+||.|+..-. ..+-...|-..+-++..-.+.=.+|
T Consensus 944 ~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~ 1023 (1436)
T KOG1366|consen 944 NFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDP 1023 (1436)
T ss_pred cccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecH
Confidence 33445555555666667778888888888744 2367999885433 3344444433333333332222233
Q ss_pred --HHHHHHHHHHcCCCCccccc
Q 023444 87 --LDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 87 --~~~~~~wl~~~Q~~dGGF~g 106 (282)
+.+.++||.++|.++|.|.-
T Consensus 1024 ~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1024 NVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHhhccCceEec
Confidence 56789999999999999963
No 59
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=52.28 E-value=19 Score=34.25 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCc---ccHHHHHHHHHHcCCCCccccc
Q 023444 39 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQG 106 (282)
Q Consensus 39 ~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~---id~~~~~~wl~~~Q~~dGGF~g 106 (282)
.+++++.|.+.|.+||-|| ++.+|=-|+++|...+.... -+-.+..++|+.-+ .+|.|+.
T Consensus 217 i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred HHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC
Confidence 4578889999999999998 57788778888877775322 24677888887643 4899983
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=37.98 E-value=2.8e+02 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHhccCCCCccc
Q 023444 39 LQNVGNYILSCQTYEGGIA 57 (282)
Q Consensus 39 ~~~~~~~I~scq~~dGGF~ 57 (282)
.++-++||+++|-.+||--
T Consensus 139 i~Rgid~ILktQ~~~gg~~ 157 (290)
T TIGR02474 139 VTKGIECILKTQVVQNGKL 157 (290)
T ss_pred HHHHHHHHHHhhcccCCcC
Confidence 4678999999998887543
No 61
>PLN02592 ent-copalyl diphosphate synthase
Probab=37.85 E-value=43 Score=35.70 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCC--CchhHHHHHHHHHHH
Q 023444 38 LLQNVGNYILSCQTYEGGIAGEPGSE--AHGGYTFCGLAAMIL 78 (282)
Q Consensus 38 ~~~~~~~~I~scq~~dGGF~~~p~~e--sh~~~TycAl~~L~l 78 (282)
...++++||++-|.+|||.|..+... --+..|-+||.+|.-
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~ 158 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKS 158 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHH
Confidence 45589999999999999998753321 224677777776654
No 62
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=36.01 E-value=54 Score=37.29 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=42.2
Q ss_pred CCCCCCeeecCC--CcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCCCCcccC
Q 023444 2 KDPSGAFRMHDA--GEIDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAG 58 (282)
Q Consensus 2 ~~~dG~F~~~~~--ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~scq~~dGGF~~ 58 (282)
|++||||..... ....++.|=+++-.+..-... ++.-..+.++|+.+.|.++|.|-.
T Consensus 984 k~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 984 KRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred hccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 789999984433 445667777777666666543 455677889999999999999975
No 63
>PLN02279 ent-kaur-16-ene synthase
Probab=35.52 E-value=44 Score=35.55 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCC----CchhHHHHHHHHHHHhc
Q 023444 37 ELLQNVGNYILSCQTYEGGIAGEPGSE----AHGGYTFCGLAAMILIN 80 (282)
Q Consensus 37 ~~~~~~~~~I~scq~~dGGF~~~p~~e----sh~~~TycAl~~L~lLg 80 (282)
....++++||++-|.+||+.|..+... --+.+|-++|.+|+--+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWG 120 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHh
Confidence 345789999999999999998653222 22467888888876644
No 64
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=24.90 E-value=2.5e+02 Score=28.14 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCCCCcccC
Q 023444 15 EIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAG 58 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~~~~--~~~~~~~~~~I~scq~~dGGF~~ 58 (282)
..++..-.-|++-+....... ....+++|++|.+||.+||=++.
T Consensus 59 ~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~ 104 (520)
T PF07944_consen 59 GHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGT 104 (520)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecc
Confidence 445554444444333332221 12356789999999999884443
No 65
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=22.23 E-value=4.9e+02 Score=27.12 Aligned_cols=87 Identities=11% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----------------------ccCC-CCccc----CCCCCCC
Q 023444 13 AGEIDVRACYTAISVASILNILDDELLQNVGNYILS-----------------------CQTY-EGGIA----GEPGSEA 64 (282)
Q Consensus 13 ~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~s-----------------------cq~~-dGGF~----~~p~~es 64 (282)
...+|+..+|+|+.++..|+...+. .+++++++.. |+.. .-... ..-..++
T Consensus 44 ~~~~dLes~yyav~glk~Lg~~~~~-~~~~C~~~~~~~~~s~~~~e~lfya~~~~~~L~C~~~~~~~~~~~l~~~l~~~s 122 (636)
T PF05817_consen 44 LPSSDLESAYYAVLGLKLLGIKVPD-SKAACKFLKKALDESSNDLESLFYAASASKALKCKVSVSNEVKSLLKAALSEDS 122 (636)
T ss_pred CCcccHHHHHHHHhhHHHhCCCCCC-hhhHHHHHHHhhccccchHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhcCCc
Confidence 3567999999999999999875432 4445555544 3322 00000 0111346
Q ss_pred chhHHHHHHHHHHHhccC-CcccHHHHHHHHHHcCCC
Q 023444 65 HGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGV 100 (282)
Q Consensus 65 h~~~TycAl~~L~lLg~~-~~id~~~~~~wl~~~Q~~ 100 (282)
....-|.|+.+|..||.. +.-|.+++++-|..++..
T Consensus 123 ~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~k 159 (636)
T PF05817_consen 123 SVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKK 159 (636)
T ss_pred cHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcc
Confidence 666677777777777642 234777777777766654
Done!