Query 023444
Match_columns 282
No_of_seqs 179 out of 1145
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_B Farnesyltransferase bet 100.0 2.4E-57 8.2E-62 441.9 18.1 248 1-281 179-517 (520)
2 3dra_B Geranylgeranyltransfera 100.0 2.1E-54 7E-59 411.2 16.6 204 1-278 127-387 (390)
3 2h6f_B Protein farnesyltransfe 100.0 1.9E-53 6.5E-58 411.1 17.1 233 1-281 184-417 (437)
4 1n4q_B Geranyltransferase type 100.0 1.8E-52 6.3E-57 397.4 18.0 198 1-278 154-357 (377)
5 3dss_B Geranylgeranyl transfer 100.0 7.9E-51 2.7E-55 380.6 21.2 199 1-276 126-324 (331)
6 3q7a_B Farnesyltransferase bet 100.0 4.8E-47 1.6E-51 369.5 14.2 220 14-236 85-340 (520)
7 3dss_B Geranylgeranyl transfer 100.0 1.1E-46 3.9E-51 352.5 15.8 208 14-237 43-256 (331)
8 3dra_B Geranylgeranyltransfera 100.0 4.4E-47 1.5E-51 360.9 12.6 206 14-235 28-310 (390)
9 1n4q_B Geranyltransferase type 100.0 1.3E-44 4.6E-49 343.4 12.1 206 14-237 44-287 (377)
10 2h6f_B Protein farnesyltransfe 100.0 5.2E-43 1.8E-47 338.2 15.9 217 1-235 86-313 (437)
11 2sqc_A Squalene-hopene cyclase 99.5 2.7E-14 9.2E-19 143.5 11.8 192 12-216 369-597 (631)
12 1w6k_A Lanosterol synthase; cy 99.4 6.1E-12 2.1E-16 128.4 17.1 176 6-235 440-664 (732)
13 2sqc_A Squalene-hopene cyclase 99.4 9.9E-13 3.4E-17 132.1 10.2 155 1-158 410-595 (631)
14 1w6k_A Lanosterol synthase; cy 99.4 5.3E-12 1.8E-16 128.9 14.9 127 1-128 493-663 (732)
15 1qqf_A Protein (complement C3D 98.9 1.2E-08 4.3E-13 91.8 14.6 99 1-99 50-172 (277)
16 2wy7_A Complement C3D fragment 98.9 3.8E-08 1.3E-12 90.2 14.6 99 1-99 66-188 (310)
17 1qqf_A Protein (complement C3D 98.5 8.2E-07 2.8E-11 79.8 12.0 94 15-108 3-113 (277)
18 2wy7_A Complement C3D fragment 98.4 2E-06 6.9E-11 78.6 11.7 95 14-108 18-129 (310)
19 1hzf_A Complement factor C4A; 98.3 5.7E-06 1.9E-10 77.6 12.4 97 1-97 103-226 (367)
20 2pn5_A TEP1R, thioester-contai 98.0 4.3E-05 1.5E-09 82.4 13.8 114 14-127 839-973 (1325)
21 1hzf_A Complement factor C4A; 97.7 0.00013 4.5E-09 68.2 9.3 93 15-107 56-164 (367)
22 2hr0_B Complement C3 alpha' ch 97.6 0.00041 1.4E-08 72.2 12.9 99 1-99 311-433 (915)
23 2pn5_A TEP1R, thioester-contai 97.0 0.0015 5.2E-08 70.4 8.7 99 1-99 884-998 (1325)
24 4acq_A Alpha-2-macroglobulin; 96.9 0.008 2.7E-07 65.6 13.1 92 14-105 950-1058(1451)
25 2hr0_B Complement C3 alpha' ch 96.7 0.0053 1.8E-07 63.9 9.9 94 14-107 263-373 (915)
26 2bb6_A TCII, TC II, transcobal 96.7 0.0022 7.5E-08 61.1 6.2 84 14-105 174-269 (414)
27 4acq_A Alpha-2-macroglobulin; 95.8 0.033 1.1E-06 60.8 10.2 97 1-97 995-1108(1451)
28 4fxk_B Complement C4-A alpha c 95.7 0.043 1.5E-06 55.7 10.3 98 1-98 380-504 (767)
29 4fxk_B Complement C4-A alpha c 95.5 0.058 2E-06 54.8 10.3 92 14-105 332-439 (767)
30 2b39_A C3; thioester, immune d 95.4 0.06 2E-06 59.4 10.9 92 14-105 1010-1118(1661)
31 2pmv_A Gastric intrinsic facto 95.2 0.064 2.2E-06 50.8 8.9 81 17-105 151-245 (399)
32 2b39_A C3; thioester, immune d 94.8 0.12 4.1E-06 57.0 11.0 98 1-98 1058-1179(1661)
33 1gxm_A Pectate lyase; mechanis 93.9 0.033 1.1E-06 51.4 3.5 106 2-107 44-191 (332)
34 2bb6_A TCII, TC II, transcobal 93.1 0.082 2.8E-06 50.3 4.7 48 2-57 219-269 (414)
35 3cu7_A Complement C5; Mg domai 92.9 0.15 5E-06 56.4 7.1 92 14-105 1008-1119(1676)
36 3cu7_A Complement C5; Mg domai 92.5 0.12 4.1E-06 57.1 5.7 97 1-97 1059-1178(1676)
37 3prx_B Cobra venom factor; imm 91.5 0.035 1.2E-06 61.3 0.0 92 14-105 994-1103(1642)
38 1r76_A Pectate lyase; A-helica 90.6 0.42 1.4E-05 45.2 6.5 91 15-105 145-266 (408)
39 3prx_B Cobra venom factor; imm 90.0 0.058 2E-06 59.6 0.0 58 1-58 1042-1104(1642)
40 1r76_A Pectate lyase; A-helica 86.6 1.6 5.6E-05 41.2 7.5 67 39-105 247-334 (408)
41 2pmv_A Gastric intrinsic facto 85.9 1 3.4E-05 42.6 5.7 68 2-87 196-265 (399)
42 1gxm_A Pectate lyase; mechanis 74.6 2.1 7.2E-05 39.4 3.5 67 41-107 35-119 (332)
43 3p5p_A Taxadiene synthase; cla 60.7 10 0.00035 38.6 5.6 57 38-95 54-112 (764)
44 3pya_A ENT-copalyl diphosphate 60.6 10 0.00035 38.4 5.5 57 39-96 52-110 (727)
45 3s9v_A Abietadiene synthase, c 60.3 12 0.0004 38.3 5.9 58 38-96 75-134 (785)
46 3sdr_A Alpha-bisabolene syntha 59.1 13 0.00044 38.2 6.0 59 37-96 101-161 (817)
47 4b2v_A S64; toxin, ICK; NMR {S 33.1 25 0.00085 20.3 1.9 17 206-222 5-21 (32)
No 1
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.4e-57 Score=441.86 Aligned_cols=248 Identities=39% Similarity=0.685 Sum_probs=202.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccC----------------------
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG---------------------- 58 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~---------------------- 58 (282)
+|++||||.+..+||.|+|+||||++++.+|+.+++++.+++++||++||++||||+.
T Consensus 179 lQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~ 258 (520)
T 3q7a_B 179 CKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSC 258 (520)
T ss_dssp HBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSE
T ss_pred HhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccccc
Confidence 5899999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCchhHHHHHHHHHHHhccC------CcccHHHHHHHHHHcCC---CCcccccccCCCCCchhhhHHHHHHHHhh
Q 023444 59 -EPGSEAHGGYTFCGLAAMILINEA------DRLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFALLR 128 (282)
Q Consensus 59 -~p~~esh~~~TycAl~~L~lLg~~------~~id~~~~~~wl~~~Q~---~dGGF~gr~~~e~D~~ysy~a~a~l~lL~ 128 (282)
.|+.|||+++|||||++|+||+.+ +.+|++++++||.+||. ++|||+||+||++|+|||||++++|.||+
T Consensus 259 ~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~ 338 (520)
T 3q7a_B 259 RVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAE 338 (520)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHH
Confidence 689999999999999999999986 46899999999999997 46999999999999999999999999999
Q ss_pred hhhcc-------cCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccccccccccc-ccCCcccCHHHHHHHHH
Q 023444 129 RFHSI-------IGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH-REREPLFHSIALQRYLL 200 (282)
Q Consensus 129 ~~~~i-------~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~-~~~~~l~~~~~l~~~iL 200 (282)
++... ..+... ...+. ++- +.. .....++|+++|++|||
T Consensus 339 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~---------------------------w~~~~~~~~l~d~~~L~~yIL 385 (520)
T 3q7a_B 339 ELVRREKSRKVKKSRIEV--FEEEK----EGD---------------------------WEDVPPIPPIFNRVALQEFTL 385 (520)
T ss_dssp HHHHHHHHHHC------------------------------------------------------CCCSSCHHHHHHHHH
T ss_pred HHhhcccccccccccccc--ccccc----ccc---------------------------cccccccccccCHHHHHHHHH
Confidence 86110 000000 00000 000 000 00125799999999999
Q ss_pred HhcCCCC---CCCCCCCCCCCCchhhhHHHHhHHhhccCCCCCCC----------C----C-------CC----------
Q 023444 201 LCSQDPR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDED----------S----S-------PL---------- 246 (282)
Q Consensus 201 ~~~Q~~~---GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~~~~----------~----~-------~~---------- 246 (282)
.|+|.+. |||++||+|.||+|||||+||+||++||.+..+.+ . | +.
T Consensus 386 ~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (520)
T 3q7a_B 386 VAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQN 465 (520)
T ss_dssp HTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHHHHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHH
T ss_pred HHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChhhHHHhhhccccccccccccccccccccccchhhHH
Confidence 8889887 99999999999999999999999999987532110 1 0 00
Q ss_pred -----------------CccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444 247 -----------------PRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281 (282)
Q Consensus 247 -----------------~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~ 281 (282)
...|.+...|+|+++||||||+..++++|.+||..
T Consensus 466 ~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~f~~ 517 (520)
T 3q7a_B 466 ARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINYFYC 517 (520)
T ss_dssp HHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHHHhh
Confidence 01345666899999999999999999999999964
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.1e-54 Score=411.23 Aligned_cols=204 Identities=30% Similarity=0.481 Sum_probs=182.9
Q ss_pred CCC---C-CCCeeecC-----------CCcchHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHhccCC
Q 023444 1 MKD---P-SGAFRMHD-----------AGEIDVRACYTAISVASILNILD-------------DELLQNVGNYILSCQTY 52 (282)
Q Consensus 1 ~~~---~-dG~F~~~~-----------~ge~d~r~~y~av~~l~lL~~~~-------------~~~~~~~~~~I~scq~~ 52 (282)
||+ + ||||.... +||.|||++|||+++++||+.++ .++.+++++||++||++
T Consensus 127 lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~y 206 (390)
T 3dra_B 127 CQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRINI 206 (390)
T ss_dssp HBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCT
T ss_pred HhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCC
Confidence 366 5 99999443 78999999999999999999887 57899999999999999
Q ss_pred CCcccCCCCCCCchhHHHHHHHHHHHhccCCcccHHHHHHHHHHcCC----------------------------CCccc
Q 023444 53 EGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG----------------------------VEGGF 104 (282)
Q Consensus 53 dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id~~~~~~wl~~~Q~----------------------------~dGGF 104 (282)
||||+..|+.|||+++|||||++|+||+++ .+|++++++||.+||. ++|||
T Consensus 207 dGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGF 285 (390)
T 3dra_B 207 NGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGF 285 (390)
T ss_dssp TSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSB
T ss_pred CCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCc
Confidence 999999999999999999999999999987 4799999999999998 47999
Q ss_pred ccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCccccccccccccccc
Q 023444 105 QGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHR 184 (282)
Q Consensus 105 ~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~ 184 (282)
+||+||++|+|||||++++|.||++..
T Consensus 286 nGR~nKl~D~CYS~Wv~~sL~iL~~~~----------------------------------------------------- 312 (390)
T 3dra_B 286 NGRENKLSDTCYSWWCTGSLYNIDVNF----------------------------------------------------- 312 (390)
T ss_dssp BSSTTCCBCTHHHHHHHHHHHHHCGGG-----------------------------------------------------
T ss_pred cCCCCCccchhHHHHHHHHHHHhcccc-----------------------------------------------------
Confidence 999999999999999999999998510
Q ss_pred cCCcccCHHHHHHHHHHhcCCC-CCCCCCCCCCCCCchhhhHHHHhHHhhccCCCCCCCCCCCCccccCCCCCCcccCcc
Q 023444 185 EREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 263 (282)
Q Consensus 185 ~~~~l~~~~~l~~~iL~~~Q~~-~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 263 (282)
..++|.+++++|||.|+|.+ .|||+++|+++||+||||+++|+|+++++.. ..|.+|||
T Consensus 313 --~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~------------------~~l~~vdp 372 (390)
T 3dra_B 313 --IKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEK------------------FALQEINP 372 (390)
T ss_dssp --GGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHH------------------HTCCCEET
T ss_pred --ccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCcc------------------CCCceeCc
Confidence 04689999999999998986 8999999999999999999999999998620 02789999
Q ss_pred ccccCHHHHHHHHhh
Q 023444 264 VFNIVLDRYHEAHEF 278 (282)
Q Consensus 264 ~~~i~~~~~~~~~~~ 278 (282)
+|+||.+.++++++-
T Consensus 373 ~~~ip~~~~~~~~~~ 387 (390)
T 3dra_B 373 ILTITKESYQFFKEE 387 (390)
T ss_dssp TTTEEHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh
Confidence 999999999998763
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.9e-53 Score=411.06 Aligned_cols=233 Identities=52% Similarity=0.932 Sum_probs=203.5
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|++||||.+.++||+|+|+||+|++++.+|+..+.+.+++.++||++||++||||+..|+.|+|+.+|||||++|.++|
T Consensus 184 ~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg 263 (437)
T 2h6f_B 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK 263 (437)
T ss_dssp TBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHT
T ss_pred hCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcC
Confidence 58999999998999999999999999999999987778899999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCC-CCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCC
Q 023444 81 EADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS 159 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~-~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~ 159 (282)
..+.++++++++||.+||. ++|||+|||||.+|+|||||++++|.||+++.....+...
T Consensus 264 ~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~-------------------- 323 (437)
T 2h6f_B 264 RERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPAL-------------------- 323 (437)
T ss_dssp CGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTC--------------------
T ss_pred CCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhccccccc--------------------
Confidence 9988999999999999999 8999999999999999999999999999986321000000
Q ss_pred CCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCC
Q 023444 160 DVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239 (282)
Q Consensus 160 ~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~ 239 (282)
....+++|.++|++|||.|+|.+.|||+++|++.||+|||||++++|+++++....
T Consensus 324 ------------------------~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~~~~~ 379 (437)
T 2h6f_B 324 ------------------------SMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSG 379 (437)
T ss_dssp ------------------------CSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEET
T ss_pred ------------------------ccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 00014689999999999999999999999999999999999999999999985431
Q ss_pred CCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281 (282)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~ 281 (282)
.. ....|++...+.|++|||+||||.++++++++||.+
T Consensus 380 ~~----~~~~~~~~~~~~l~~i~p~~~i~~~~~~~~~~~~~~ 417 (437)
T 2h6f_B 380 AM----LHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ 417 (437)
T ss_dssp TE----EEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred cc----ccccccCCcccCccccCCcccCCHHHHHHHHHHHHh
Confidence 11 011244555678999999999999999999999974
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.8e-52 Score=397.42 Aligned_cols=198 Identities=31% Similarity=0.589 Sum_probs=183.1
Q ss_pred CCCCCCCeeec-CCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHh
Q 023444 1 MKDPSGAFRMH-DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 1 ~~~~dG~F~~~-~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lL 79 (282)
+|++||||.+. .+||+|||+||||++++.+|+.++.++++++++||++||++||||+..|+.|||+++|||||++|.+|
T Consensus 154 ~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~ll 233 (377)
T 1n4q_B 154 LQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLM 233 (377)
T ss_dssp HBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHH
T ss_pred hcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Confidence 58999999976 89999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred ccCCcc----cHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCcc
Q 023444 80 NEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQT 155 (282)
Q Consensus 80 g~~~~i----d~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~ 155 (282)
+..+.+ +++++++||.+|| +|||+|||||.+|+|||||++++|+||++.
T Consensus 234 g~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~------------------------- 286 (377)
T 1n4q_B 234 GKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIF------------------------- 286 (377)
T ss_dssp TCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCG-------------------------
T ss_pred cCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCc-------------------------
Confidence 987654 7899999999999 899999999999999999999999999863
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCC-CCCCCCCCCCCCCchhhhHHHHhHHhhc
Q 023444 156 TTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQ 234 (282)
Q Consensus 156 ~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~-~GGf~grp~k~~D~cyS~w~la~Lsll~ 234 (282)
.++|.++|++|||.| |.+ .|||+++|++.||++|||+++++|++++
T Consensus 287 --------------------------------~~~d~~~l~~fil~c-Q~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~ 333 (377)
T 1n4q_B 287 --------------------------------QYTNFEKNRNYILST-QDRLVGGFAKWPDSHPDALHAYFGICGLSLME 333 (377)
T ss_dssp --------------------------------GGSCHHHHHHHHHTT-BCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTT
T ss_pred --------------------------------cccCHHHHHHHHHHH-cCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 357889999999975 777 8999999999999999999999999997
Q ss_pred cCCCCCCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhh
Q 023444 235 HSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF 278 (282)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~ 278 (282)
+. .|.+|||+||||.+.+++++++
T Consensus 334 ~~--------------------~l~~i~p~~~i~~~~~~~~~~~ 357 (377)
T 1n4q_B 334 ES--------------------GICKVHPALNVSTRTSERLRDL 357 (377)
T ss_dssp CT--------------------TCCCEETTTTEEHHHHHHHHHH
T ss_pred CC--------------------CCCCCCCcccCCHHHHHHHHHH
Confidence 53 2789999999999988887765
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=7.9e-51 Score=380.64 Aligned_cols=199 Identities=29% Similarity=0.585 Sum_probs=185.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|++||||.+.++||+|+|+||||+++|.+|+.++.++++++++||++||++||||++.|+.|+|+++|||||++|.+++
T Consensus 126 ~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg 205 (331)
T 3dss_B 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITS 205 (331)
T ss_dssp TBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCC
Q 023444 81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASD 160 (282)
Q Consensus 81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~ 160 (282)
..+.+|++++++||.++|.++|||+||++|++|+|||||++++|.+|++.
T Consensus 206 ~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~------------------------------ 255 (331)
T 3dss_B 206 QLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL------------------------------ 255 (331)
T ss_dssp CGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG------------------------------
T ss_pred ccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCc------------------------------
Confidence 99889999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCCC
Q 023444 161 VSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD 240 (282)
Q Consensus 161 ~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~~ 240 (282)
..+|.+++++|||+|+|...|||+++|++.||.+||||++++|++++..
T Consensus 256 ---------------------------~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~---- 304 (331)
T 3dss_B 256 ---------------------------HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE---- 304 (331)
T ss_dssp ---------------------------GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT----
T ss_pred ---------------------------chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC----
Confidence 2367899999999875544599999999999999999999999999743
Q ss_pred CCCCCCCccccCCCCCCcccCccccccCHHHHHHHH
Q 023444 241 EDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 276 (282)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~ 276 (282)
.|.+|||+||||.+.++++.
T Consensus 305 ----------------~l~~~~p~~~~~~~~~~~~~ 324 (331)
T 3dss_B 305 ----------------QIKPVSPVFCMPEEVLQRVN 324 (331)
T ss_dssp ----------------TSCCBCTTTSSBHHHHHHHT
T ss_pred ----------------CCCCCCccccCCHHHHHHhC
Confidence 27899999999999999864
No 6
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=4.8e-47 Score=369.45 Aligned_cols=220 Identities=14% Similarity=0.121 Sum_probs=187.2
Q ss_pred CcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCCCCcccCCC--CCCCchhHHHHHHHHHHHhccC------Cc
Q 023444 14 GEIDVRACYTAISVASILN-ILDDELLQNVGNYILSCQTYEGGIAGEP--GSEAHGGYTFCGLAAMILINEA------DR 84 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~-~~~~~~~~~~~~~I~scq~~dGGF~~~p--~~esh~~~TycAl~~L~lLg~~------~~ 84 (282)
..++++++||++.+|.||+ .+++++++++++||++||+++|||++.| ++.+|+.+||+||++|.+|+.. +.
T Consensus 85 Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~ 164 (520)
T 3q7a_B 85 DASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKD 164 (520)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhh
Confidence 3578999999999999999 6778899999999999999999999999 9999999999999999999864 46
Q ss_pred cc--HHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCC---
Q 023444 85 LD--LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS--- 159 (282)
Q Consensus 85 id--~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~--- 159 (282)
|| ++++++||.++|.+||||.+..+++.|+|++|||++++.+|+.+..++.+++++||++||+ +||||+...+
T Consensus 165 Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn--~DGGfGe~s~~~~ 242 (520)
T 3q7a_B 165 LAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQT--YEGGFACASFPFP 242 (520)
T ss_dssp HHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBC--TTSSBCSCEEEEC
T ss_pred hhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcC--CCCCccCcccccc
Confidence 78 9999999999999999999999999999999999999999998877788999999999999 9998887210
Q ss_pred -CCCCCC----CCCC--cccccccccccccc-------ccCC-----cccCHHHHHHHHHHhcCC---CCCCCCCCCCCC
Q 023444 160 -DVSEGD----GSSD--EISSQGDEHCHFQH-------RERE-----PLFHSIALQRYLLLCSQD---PRGGLRDKLRKP 217 (282)
Q Consensus 160 -~~~~g~----~~s~--~~~~~~~~~~~f~~-------~~~~-----~l~~~~~l~~~iL~~~Q~---~~GGf~grp~k~ 217 (282)
...-|. ..+. .++.|+|+|+||+. ..+. ..+|.++|++| |+.||. +.|||+|||||+
T Consensus 243 ~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~W-L~~RQ~~~~e~GGF~GR~NKl 321 (520)
T 3q7a_B 243 SVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRW-TVLQQGEPIEGGGFRGRTNKL 321 (520)
T ss_dssp ------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHH-HHHTBCCGGGTTCBBSSTTSC
T ss_pred ccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHH-HHHhCCcccCCCcccCCCCCC
Confidence 000000 0000 23789999999942 1221 46789999999 567896 469999999999
Q ss_pred CCchhhhHHHHhHHhhccC
Q 023444 218 RDYYHTCYCLSGLSICQHS 236 (282)
Q Consensus 218 ~D~cyS~w~la~Lsll~~~ 236 (282)
+|+|||||++++|.||+..
T Consensus 322 vD~CYSfWvggsl~iL~~~ 340 (520)
T 3q7a_B 322 VDGCYSWWVGGGAPVAEEL 340 (520)
T ss_dssp BCTTHHHHTGGGHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHH
Confidence 9999999999999999864
No 7
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.1e-46 Score=352.47 Aligned_cols=208 Identities=21% Similarity=0.275 Sum_probs=188.8
Q ss_pred CcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCcccHHHHHHH
Q 023444 14 GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGW 93 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~id~~~~~~w 93 (282)
..+++..+||++.+|.+|+.++.++++++++||++||++||||++.|++++|+.+||+||++|.+++..+.+|++++++|
T Consensus 43 d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~f 122 (331)
T 3dss_B 43 EYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAY 122 (331)
T ss_dssp GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 35799999999999999999888899999999999999999999999999999999999999999999888999999999
Q ss_pred HHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccc
Q 023444 94 VVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISS 173 (282)
Q Consensus 94 l~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~ 173 (282)
|.++|.+||||.+++++|.|+|+||||+++|.+|+.++.++.+++++||++||+ +||||+..| +.
T Consensus 123 L~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~--~dGGfg~~p-------------g~ 187 (331)
T 3dss_B 123 VQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN--FDGGFGCRP-------------GS 187 (331)
T ss_dssp HHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC--TTSCBCSST-------------TC
T ss_pred HhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCc--CCCCcCCCC-------------CC
Confidence 999999999999999999999999999999999999888888999999999999 999887654 45
Q ss_pred cccccccccc------ccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCC
Q 023444 174 QGDEHCHFQH------REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSW 237 (282)
Q Consensus 174 ~~~~~~~f~~------~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~ 237 (282)
++|+++||.. ......++.+++++|++ .||.++|||+|||+|++|+|||||++++|++++...
T Consensus 188 esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~-~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~ 256 (331)
T 3dss_B 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLC-ERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLH 256 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHH-TTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG
T ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHH-HhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcc
Confidence 6788888831 11124567899999955 679999999999999999999999999999999753
No 8
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=4.4e-47 Score=360.88 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=180.2
Q ss_pred CcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccCCC----CcccCCC-----C---CCCchhHHHHHHHHHHHh
Q 023444 14 GEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQTYE----GGIAGEP-----G---SEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~--~~~~~~~~~~~I~scq~~d----GGF~~~p-----~---~esh~~~TycAl~~L~lL 79 (282)
..+++..+||++.+|+||+.+ ++.+++++++||++||.++ |||++.| + +.+|+.+||+||++|.+|
T Consensus 28 D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~il 107 (390)
T 3dra_B 28 DSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLIL 107 (390)
T ss_dssp TTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHh
Confidence 457999999999999999987 6888999999999998654 9999985 5 689999999999999999
Q ss_pred ccC--CcccHHHHHHHHHHcCC---C-Cccccccc-----------CCCCCchhhhHHHHHHHHhhhhh-----------
Q 023444 80 NEA--DRLDLDALIGWVVFRQG---V-EGGFQGRT-----------NKLVDGCYSFWQGGVFALLRRFH----------- 131 (282)
Q Consensus 80 g~~--~~id~~~~~~wl~~~Q~---~-dGGF~gr~-----------~~e~D~~ysy~a~a~l~lL~~~~----------- 131 (282)
+.. +.+|++++++||.++|. + ||||...+ ++|+|+|++|||+++++||+.+.
T Consensus 108 g~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~ 187 (390)
T 3dra_B 108 KSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSN 187 (390)
T ss_dssp TCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC------------
T ss_pred CchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccc
Confidence 974 78999999999999998 6 89999443 78999999999999999999887
Q ss_pred --cccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccccccccccccc-----CCcccCHHHHHHHHHHhcC
Q 023444 132 --SIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRE-----REPLFHSIALQRYLLLCSQ 204 (282)
Q Consensus 132 --~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~-----~~~l~~~~~l~~~iL~~~Q 204 (282)
.++.+++++||++||| |||||+..| +.|+|+|+||++.. -..+.|.++|++| |+.||
T Consensus 188 ~~~id~~~~~~~I~~cq~--ydGGfg~~p-------------~~EsH~G~TfCalaaL~lL~~~~~d~~~l~~W-L~~RQ 251 (390)
T 3dra_B 188 ETDIDLISLQQFILDRIN--INGGFSSTI-------------MDESHLGFTFCAIASLKLLNYPLEKLKSTKEW-LIHRQ 251 (390)
T ss_dssp -CCCCHHHHHHHHHTTBC--TTSCBCSST-------------TSCCCHHHHHHHHHHHHHTTCCGGGCHHHHHH-HHTTB
T ss_pred cccccHHHHHHHHHHhcC--CCCCcCCCC-------------CcccccchhHHHHHHHHHhCcccccHHHHHHH-HHHcC
Confidence 6788999999999999 999988765 46889999994321 1124688999999 56899
Q ss_pred C----------------------------CCCCCCCCCCCCCCchhhhHHHHhHHhhcc
Q 023444 205 D----------------------------PRGGLRDKLRKPRDYYHTCYCLSGLSICQH 235 (282)
Q Consensus 205 ~----------------------------~~GGf~grp~k~~D~cyS~w~la~Lsll~~ 235 (282)
. ++|||+|||||++|+|||||++++|.||+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~ 310 (390)
T 3dra_B 252 VDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDV 310 (390)
T ss_dssp CCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCG
T ss_pred ccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcc
Confidence 7 469999999999999999999999999994
No 9
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.3e-44 Score=343.43 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=181.0
Q ss_pred CcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC---------CCCcccCCCCC-----------------CCchh
Q 023444 14 GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT---------YEGGIAGEPGS-----------------EAHGG 67 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~---------~dGGF~~~p~~-----------------esh~~ 67 (282)
..+++..+||+|.+|++|+.++.++++++++||++||+ .+|||++.+.. .+|+.
T Consensus 44 d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~ 123 (377)
T 1n4q_B 44 ETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIA 123 (377)
T ss_dssp GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHH
T ss_pred ccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHH
Confidence 35799999999999999998777779999999999999 68999997754 39999
Q ss_pred HHHHHHHHHHHhc-cCCcccHHHHHHHHHHcCCCCcccccc-cCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccC
Q 023444 68 YTFCGLAAMILIN-EADRLDLDALIGWVVFRQGVEGGFQGR-TNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 145 (282)
Q Consensus 68 ~TycAl~~L~lLg-~~~~id~~~~~~wl~~~Q~~dGGF~gr-~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c 145 (282)
.||+||++|.+|+ ..+.+|++++++||.++|.+||||.+. .+++.|+|++|||++++.+|+.+..++.+++++||++|
T Consensus 124 ~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~sc 203 (377)
T 1n4q_B 124 MTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRS 203 (377)
T ss_dssp HHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 9999999999998 467899999999999999999999997 68999999999999999999998888899999999999
Q ss_pred ccccCCCCccccCCCCCCCCCCCCcccccccccccccc-------ccCCcc---cCHHHHHHHHHHhcCCCCCCCCCCCC
Q 023444 146 AECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH-------REREPL---FHSIALQRYLLLCSQDPRGGLRDKLR 215 (282)
Q Consensus 146 ~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~-------~~~~~l---~~~~~l~~~iL~~~Q~~~GGf~grp~ 215 (282)
|+ +||||+..| +.|+|+++||++ ..++.. .+.+++++| |..|| +|||+||||
T Consensus 204 Qn--~DGGfGe~p-------------~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~w-L~~rQ--~gGf~GR~n 265 (377)
T 1n4q_B 204 MS--YDNGLAQGA-------------GLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRW-CIMRQ--QNGYHGRPN 265 (377)
T ss_dssp BC--TTSSBBSST-------------TSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHH-HHTTB--SSSBCSSTT
T ss_pred cC--CCCCCCCCC-------------CCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHH-HHhcC--CCCcCCCCC
Confidence 99 999887654 457799999832 111111 167889999 55789 899999999
Q ss_pred CCCCchhhhHHHHhHHhhccCC
Q 023444 216 KPRDYYHTCYCLSGLSICQHSW 237 (282)
Q Consensus 216 k~~D~cyS~w~la~Lsll~~~~ 237 (282)
|++|+|||||++++|.||+...
T Consensus 266 K~~D~CYSfWv~~~l~iL~~~~ 287 (377)
T 1n4q_B 266 KPVDTCYSFWVGATLKLLKIFQ 287 (377)
T ss_dssp SCCCTTHHHHHHHHHHHTTCGG
T ss_pred cchhHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999854
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=5.2e-43 Score=338.18 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=190.2
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHh
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~-~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lL 79 (282)
+|+.+|+|...... ++..+||++.+|.+|+. .+.+.++++++||++||++||||++.+++++|+..||+||.+|.++
T Consensus 86 lq~~~gg~~a~D~~--r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~l 163 (437)
T 2h6f_B 86 LRQLTDAYECLDAS--RPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCII 163 (437)
T ss_dssp TTEECGGGGGGTTC--HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccccCC--CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHh
Confidence 36788999865543 67889999999999996 4677899999999999999999999999999999999999999999
Q ss_pred ccC---CcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccc
Q 023444 80 NEA---DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTT 156 (282)
Q Consensus 80 g~~---~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~ 156 (282)
|.. +.++++++++||.++|++||||.++++++.|+|++|||++++.+|+.......+++++||++||+ +||||+.
T Consensus 164 g~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~--~DGGwg~ 241 (437)
T 2h6f_B 164 GTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN--WEGGIGG 241 (437)
T ss_dssp CCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBC--TTSSBCS
T ss_pred CCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--CCCCcCC
Confidence 964 67899999999999999999999999999999999999999999998766678899999999999 9998776
Q ss_pred cCCCCCCCCCCCCccccccccccccccc------cCCcccCHHHHHHHHHHhcCC-CCCCCCCCCCCCCCchhhhHHHHh
Q 023444 157 TASDVSEGDGSSDEISSQGDEHCHFQHR------EREPLFHSIALQRYLLLCSQD-PRGGLRDKLRKPRDYYHTCYCLSG 229 (282)
Q Consensus 157 ~~~~~~~g~~~s~~~~~~~~~~~~f~~~------~~~~l~~~~~l~~~iL~~~Q~-~~GGf~grp~k~~D~cyS~w~la~ 229 (282)
.| +.++|+++||... ......+.+++++||+ .||. ++|||+|||||.+|+|||||++++
T Consensus 242 ~p-------------g~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~-~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~ 307 (437)
T 2h6f_B 242 VP-------------GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT-SRQMRFEGGFQGRCNKLVDGCYSFWQAGL 307 (437)
T ss_dssp ST-------------TSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHH-HTBCTTTCSBBSSTTSCBCTTHHHHTTTH
T ss_pred CC-------------CCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHH-hcCCCCCCCccCCCCCccchHHHHHHHHH
Confidence 44 4567999888321 1124568899999966 5676 789999999999999999999999
Q ss_pred HHhhcc
Q 023444 230 LSICQH 235 (282)
Q Consensus 230 Lsll~~ 235 (282)
|+||+.
T Consensus 308 L~lL~~ 313 (437)
T 2h6f_B 308 LPLLHR 313 (437)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999975
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.53 E-value=2.7e-14 Score=143.52 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=132.7
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhccCCCCcccCCCC-------------------CCCchhH
Q 023444 12 DAGEIDVRACYTAISVASILNILD----DELLQNVGNYILSCQTYEGGIAGEPG-------------------SEAHGGY 68 (282)
Q Consensus 12 ~~ge~d~r~~y~av~~l~lL~~~~----~~~~~~~~~~I~scq~~dGGF~~~p~-------------------~esh~~~ 68 (282)
..+.+|+..|.+++.+|..++... ....++.++||+++|++||||+.... ..+++..
T Consensus 369 ~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~ 448 (631)
T 2sqc_A 369 NVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDV 448 (631)
T ss_dssp CTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHH
T ss_pred CCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchH
Confidence 345688999999999999998743 23567899999999999999975321 1267778
Q ss_pred HHHHHHHHHHhccC-CcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhh----cccCCCCCcccc
Q 023444 69 TFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH----SIIGESPTPVDQ 143 (282)
Q Consensus 69 TycAl~~L~lLg~~-~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~----~i~~~~~~~~i~ 143 (282)
|..+|.+|..++.. ....+++.++||.++|++||||.++. +++|+|+...++..|.... ....+++.+|++
T Consensus 449 Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~ 524 (631)
T 2sqc_A 449 TAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVE 524 (631)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 98999999988752 23457899999999999999997654 4679998888887776543 123466789999
Q ss_pred cCccccCCCCccccCCCC---CCCCCCCCcccccccccccc---ccc---cCCcccCHHHHHHHHHHhcCCCCCCCCCCC
Q 023444 144 RGAECSIDNTQTTTASDV---SEGDGSSDEISSQGDEHCHF---QHR---EREPLFHSIALQRYLLLCSQDPRGGLRDKL 214 (282)
Q Consensus 144 ~c~~~~~dGg~~~~~~~~---~~g~~~s~~~~~~~~~~~~f---~~~---~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp 214 (282)
++|+ .|||++..+... .|+. +...|...|+ +.+ ........++..+|++ .+|.++|||....
T Consensus 525 s~Q~--~DGgWg~~~~sy~~~~~~~------~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~-~~Q~~dGgw~~~~ 595 (631)
T 2sqc_A 525 QHQN--PDGGWGEDCRSYEDPAYAG------KGASTPSQTAWALMALIAGGRAESEAARRGVQYLV-ETQRPDGGWDEPY 595 (631)
T ss_dssp HTCC--TTSCCCCCGGGGTCGGGTT------CSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHH-HHCCTTSCCCCCS
T ss_pred HhCc--CCCCcCCccccccccccCC------CCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-hccCCCCCcCCCC
Confidence 9999 899886543211 0100 0122333332 111 1111122466889965 5798999999876
Q ss_pred CC
Q 023444 215 RK 216 (282)
Q Consensus 215 ~k 216 (282)
..
T Consensus 596 ~t 597 (631)
T 2sqc_A 596 YT 597 (631)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.39 E-value=6.1e-12 Score=128.37 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=123.8
Q ss_pred CCeeecC--CCcchHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhccCCCCcccCCCC--------------
Q 023444 6 GAFRMHD--AGEIDVRACYTAISVASILNI--------LDDELLQNVGNYILSCQTYEGGIAGEPG-------------- 61 (282)
Q Consensus 6 G~F~~~~--~ge~d~r~~y~av~~l~lL~~--------~~~~~~~~~~~~I~scq~~dGGF~~~p~-------------- 61 (282)
|||.... .+.+|+-.|-.++.+|..+.. .+....++.++||+++|++||||+....
T Consensus 440 GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e 519 (732)
T 1w6k_A 440 GGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSE 519 (732)
T ss_dssp TCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCS
T ss_pred CeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchh
Confidence 8886443 356788889999999888742 3445678899999999999999963211
Q ss_pred -------CCCchhHHHHHHHHHHHhccC------C--cccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHH
Q 023444 62 -------SEAHGGYTFCGLAAMILINEA------D--RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 126 (282)
Q Consensus 62 -------~esh~~~TycAl~~L~lLg~~------~--~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~l 126 (282)
..+++..|.++|.+|..++.. + ...+++.++||.++|.+||||.++. +..++..+++++.+|.+
T Consensus 520 ~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~ 598 (732)
T 1w6k_A 520 VFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW-GVCFTYGTWFGLEAFAC 598 (732)
T ss_dssp SCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSS-BSSHHHHHHHHHHHHHH
T ss_pred cccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcC-CCccchHHHHHHHHHHH
Confidence 124667888899999988742 1 1247889999999999999998753 34444455666666665
Q ss_pred hhhhhcccCCCCCcccccCccccCCCCccccCCCCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCC
Q 023444 127 LRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP 206 (282)
Q Consensus 127 L~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~ 206 (282)
++.... + + ...-..++..+|++ .+|.+
T Consensus 599 aG~~~~---~-------------------------------~------------------~~~~~i~rav~~Ll-s~Q~~ 625 (732)
T 1w6k_A 599 MGQTYR---D-------------------------------G------------------TACAEVSRACDFLL-SRQMA 625 (732)
T ss_dssp TTCCCB---T-------------------------------T------------------BCCHHHHHHHHHHH-TTCCT
T ss_pred hCCccc---c-------------------------------c------------------chhHHHHHHHHHHH-Hhccc
Confidence 553210 0 0 00012466789965 57889
Q ss_pred CCCCCCC----------CCCCCCchhhhHHHHhHHhhcc
Q 023444 207 RGGLRDK----------LRKPRDYYHTCYCLSGLSICQH 235 (282)
Q Consensus 207 ~GGf~gr----------p~k~~D~cyS~w~la~Lsll~~ 235 (282)
+||+... +++.+|+..|.|++.+|..++.
T Consensus 626 DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~ 664 (732)
T 1w6k_A 626 DGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRH 664 (732)
T ss_dssp TSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999864 3567899999999999877654
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.38 E-value=9.9e-13 Score=132.13 Aligned_cols=155 Identities=13% Similarity=0.071 Sum_probs=115.1
Q ss_pred CCCCCCCeeecCC-------------------CcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCCCCcccCCC
Q 023444 1 MKDPSGAFRMHDA-------------------GEIDVRACYTAISVASILNILD-DELLQNVGNYILSCQTYEGGIAGEP 60 (282)
Q Consensus 1 ~~~~dG~F~~~~~-------------------ge~d~r~~y~av~~l~lL~~~~-~~~~~~~~~~I~scq~~dGGF~~~p 60 (282)
+|++||+|..... ..+++-.|..++.+|..++... ....++.++||.++|++||||.+..
T Consensus 410 ~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w 489 (631)
T 2sqc_A 410 MQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW 489 (631)
T ss_dssp TCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS
T ss_pred hcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 5899999963211 1267778888999998887532 3567899999999999999996654
Q ss_pred CCCCchhHHHHHHHHHHHhccC-CcccHHHHHHHHHHcCCCCccccccc----------CCCCCchhhhHHHHHHHHhhh
Q 023444 61 GSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLRR 129 (282)
Q Consensus 61 ~~esh~~~TycAl~~L~lLg~~-~~id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~ysy~a~a~l~lL~~ 129 (282)
+ ..+...|..++.+|..++.. ....+++.++||.++|++||||...+ +++.|+..|+||+..|..++.
T Consensus 490 g-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 490 G-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp B-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred C-CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 23444455566666666642 23467899999999999999996432 357899999999999988876
Q ss_pred hhcccCCCCCcccccCccccCCCCccccC
Q 023444 130 FHSIIGESPTPVDQRGAECSIDNTQTTTA 158 (282)
Q Consensus 130 ~~~i~~~~~~~~i~~c~~~~~dGg~~~~~ 158 (282)
......+++++|+.++|+ .||||+...
T Consensus 569 ~~~~~i~rav~wL~~~Q~--~dGgw~~~~ 595 (631)
T 2sqc_A 569 AESEAARRGVQYLVETQR--PDGGWDEPY 595 (631)
T ss_dssp SSSHHHHHHHHHHHHHCC--TTSCCCCCS
T ss_pred CChHHHHHHHHHHHhccC--CCCCcCCCC
Confidence 533344667889999999 899886643
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.37 E-value=5.3e-12 Score=128.86 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=93.9
Q ss_pred CCCCCCCeeecCC---------------------CcchHHHHHHHHHHHHHhCCC------C--HHHHHHHHHHHHhccC
Q 023444 1 MKDPSGAFRMHDA---------------------GEIDVRACYTAISVASILNIL------D--DELLQNVGNYILSCQT 51 (282)
Q Consensus 1 ~~~~dG~F~~~~~---------------------ge~d~r~~y~av~~l~lL~~~------~--~~~~~~~~~~I~scq~ 51 (282)
+|++||||..... ..+.+-.|..++.+|..++.. + ....++.++||.++|+
T Consensus 493 ~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~ 572 (732)
T 1w6k_A 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQR 572 (732)
T ss_dssp TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcC
Confidence 5899999953211 112455677788888877532 1 2357889999999999
Q ss_pred CCCcccCCCCCCCchhHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHcCCCCccccccc----------CCCCCchh
Q 023444 52 YEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-----LDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCY 116 (282)
Q Consensus 52 ~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~-----id~~~~~~wl~~~Q~~dGGF~gr~----------~~e~D~~y 116 (282)
+||||.+..+ ..+...|++++.+|..+|.... ..+++.++||+++|++|||+.... .+..|+..
T Consensus 573 ~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~ 651 (732)
T 1w6k_A 573 ADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHN 651 (732)
T ss_dssp TTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHH
T ss_pred CCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHH
Confidence 9999987554 3455678889999999987432 357899999999999999998642 45678999
Q ss_pred hhHHHHHHHHhh
Q 023444 117 SFWQGGVFALLR 128 (282)
Q Consensus 117 sy~a~a~l~lL~ 128 (282)
|.||+-+|..++
T Consensus 652 TAwALlALl~ag 663 (732)
T 1w6k_A 652 TCWAMMGLMAVR 663 (732)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 988886664443
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.95 E-value=1.2e-08 Score=91.81 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=71.9
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh-ccCCCCcccCCCCC-------------C
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILS-CQTYEGGIAGEPGS-------------E 63 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~s-cq~~dGGF~~~p~~-------------e 63 (282)
+|++||||....++.++...|-+++.++..++.. ++...++.++||.+ .|.+||+|.+.-.- +
T Consensus 50 ~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~ 129 (277)
T 1qqf_A 50 FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKE 129 (277)
T ss_dssp TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTT
T ss_pred hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCcc
Confidence 6899999998777788999999999999988753 44556788999996 99999999764321 2
Q ss_pred CchhHHHHHHHHHHHhccC-----C--cccHHHHHHHHHHcCC
Q 023444 64 AHGGYTFCGLAAMILINEA-----D--RLDLDALIGWVVFRQG 99 (282)
Q Consensus 64 sh~~~TycAl~~L~lLg~~-----~--~id~~~~~~wl~~~Q~ 99 (282)
+.+..|..++.+|.-.+.. + ...+++.++||.++|.
T Consensus 130 ~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 172 (277)
T 1qqf_A 130 ADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYL 172 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhc
Confidence 3355565566666544321 1 1246678899999876
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.86 E-value=3.8e-08 Score=90.16 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=71.6
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh-ccCCCCcccCCCCC-------------C
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILS-CQTYEGGIAGEPGS-------------E 63 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~s-cq~~dGGF~~~p~~-------------e 63 (282)
+|++||||....+..++...|-+++.++..++.. ++...++.++||.+ .|.+||+|.+.-.. +
T Consensus 66 ~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~ 145 (310)
T 2wy7_A 66 FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE 145 (310)
T ss_dssp TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSC
T ss_pred hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccc
Confidence 6899999997777788999999999999988753 44556788999996 99999999864321 2
Q ss_pred CchhHHHHHHHHHHHhccC-----C--cccHHHHHHHHHHcCC
Q 023444 64 AHGGYTFCGLAAMILINEA-----D--RLDLDALIGWVVFRQG 99 (282)
Q Consensus 64 sh~~~TycAl~~L~lLg~~-----~--~id~~~~~~wl~~~Q~ 99 (282)
+.+..|..++.+|.-.+.. + ...+++.++||.++|.
T Consensus 146 ~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~ 188 (310)
T 2wy7_A 146 KDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYM 188 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGG
T ss_pred cccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhh
Confidence 3355565566666544321 1 1245678899999876
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.51 E-value=8.2e-07 Score=79.82 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHHHHhC---CC---CHHHHHHHHHH-------HHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc
Q 023444 15 EIDVRACYTAISVASILN---IL---DDELLQNVGNY-------ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~---~~---~~~~~~~~~~~-------I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~ 81 (282)
|-.|...+=.|.++..|+ .+ +++.+++++++ ++++|++||||+..++.+++...|-.++.+|..+..
T Consensus 3 EQ~~~~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~ 82 (277)
T 1qqf_A 3 EQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAAN 82 (277)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhh
Confidence 445555555555555553 32 23445555555 999999999999999999999999999999998886
Q ss_pred CCccc---HHHHHHHHHH-cCCCCccccccc
Q 023444 82 ADRLD---LDALIGWVVF-RQGVEGGFQGRT 108 (282)
Q Consensus 82 ~~~id---~~~~~~wl~~-~Q~~dGGF~gr~ 108 (282)
...+| +++.++||.+ +|.+||+|.++.
T Consensus 83 ~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~ 113 (277)
T 1qqf_A 83 LIAIDSQVLCGAVKWLILEKQKPDGVFQEDG 113 (277)
T ss_dssp TSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred cCCCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence 54455 4578999995 999999998763
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.39 E-value=2e-06 Score=78.60 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=72.3
Q ss_pred CcchHHHHHHHHHHHHHhC---CC---CHHHHHHHH-------HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILN---IL---DDELLQNVG-------NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~~---~~~~~~~~~-------~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|-.|...+=.+.++..|+ .+ +++.+++++ ++++++|++||||+..++.+++...|-.++.+|..+.
T Consensus 18 ~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~ 97 (310)
T 2wy7_A 18 GEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAV 97 (310)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHH
Confidence 5777777776676666554 32 123344444 4599999999999999989999999999999999888
Q ss_pred cCCccc---HHHHHHHHHH-cCCCCccccccc
Q 023444 81 EADRLD---LDALIGWVVF-RQGVEGGFQGRT 108 (282)
Q Consensus 81 ~~~~id---~~~~~~wl~~-~Q~~dGGF~gr~ 108 (282)
....+| +++.++||.+ +|.+||+|.++.
T Consensus 98 ~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~ 129 (310)
T 2wy7_A 98 NLIAIDSQVLCGAVKWLILEKQKPDGVFQEDA 129 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCccccCC
Confidence 654455 4578999996 999999998763
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.29 E-value=5.7e-06 Score=77.57 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCCC------------CCCc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPG------------SEAH 65 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p~------------~esh 65 (282)
+|++||||..-.+...+...|-+++-.|..++. .+....++.++||.+.|.+||+|.+.-. .++.
T Consensus 103 ~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~ 182 (367)
T 1hzf_A 103 FRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET 182 (367)
T ss_dssp TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHH
T ss_pred ccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCccc
Confidence 699999998666666788888888888877763 2445678889999999999999986421 1344
Q ss_pred hhHHHHHHHHHHHhccC--C----------cccHHHHHHHHHHc
Q 023444 66 GGYTFCGLAAMILINEA--D----------RLDLDALIGWVVFR 97 (282)
Q Consensus 66 ~~~TycAl~~L~lLg~~--~----------~id~~~~~~wl~~~ 97 (282)
+..|..++.+|.-.+.. + ...+++.++||.++
T Consensus 183 ~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 183 VALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 66666677777544421 1 11356778999776
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=4.3e-05 Score=82.44 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=83.0
Q ss_pred CcchHHHHHHHHHHHHHhC---CCCHHHHHHHHH-------HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCC
Q 023444 14 GEIDVRACYTAISVASILN---ILDDELLQNVGN-------YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 83 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~~~~~~~~~~~~-------~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~ 83 (282)
+|..|...+-.+.++.+|+ .++++.++++++ +++++|++||||+..++.+++...|-.++.+|..+....
T Consensus 839 ~EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~ 918 (1325)
T 2pn5_A 839 GEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYI 918 (1325)
T ss_dssp TTGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhE
Confidence 4777766666666666664 455555555555 559999999999999999999999999999999987554
Q ss_pred c-cc---HHHHHHHHHHcCCCCcccccccC-------CCCCchhhhHHHHHHHHh
Q 023444 84 R-LD---LDALIGWVVFRQGVEGGFQGRTN-------KLVDGCYSFWQGGVFALL 127 (282)
Q Consensus 84 ~-id---~~~~~~wl~~~Q~~dGGF~gr~~-------~e~D~~ysy~a~a~l~lL 127 (282)
. +| .++.++||.++|.+||+|.++.. +..+.+++|.+....+|+
T Consensus 919 ~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~ 973 (1325)
T 2pn5_A 919 SDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALL 973 (1325)
T ss_dssp SCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHh
Confidence 3 54 56889999999999999987621 334555655554333443
No 21
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.68 E-value=0.00013 Score=68.20 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred cchHHHHHHHHHHHHHhC---C---CCH-------HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcc
Q 023444 15 EIDVRACYTAISVASILN---I---LDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 81 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~---~---~~~-------~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~ 81 (282)
|..+...|=-+.++..|+ . +++ ...++.++||++.|++||||+.-++..++...|-.++-.|..++.
T Consensus 56 EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~ 135 (367)
T 1hzf_A 56 EQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQE 135 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHH
Confidence 455555555555555553 2 221 123456789999999999999887777888888888888888775
Q ss_pred CCccc---HHHHHHHHHHcCCCCcccccc
Q 023444 82 ADRLD---LDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 82 ~~~id---~~~~~~wl~~~Q~~dGGF~gr 107 (282)
.-.+| +++.++||.++|.+||+|.++
T Consensus 136 ~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 136 QVGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp GTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HhCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 43333 567889999999999999876
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.62 E-value=0.00041 Score=72.22 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh-ccCCCCcccCCCC--------C-----C
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILS-CQTYEGGIAGEPG--------S-----E 63 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~s-cq~~dGGF~~~p~--------~-----e 63 (282)
+|++||||..-.+++.+...|=+++-.|..+... ++...++.++||.+ .|.+||.|...-. + +
T Consensus 311 ~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~ 390 (915)
T 2hr0_B 311 FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE 390 (915)
T ss_dssp GCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTT
T ss_pred hhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccc
Confidence 5899999997777788888888888888777632 34557788999995 9999999865321 1 2
Q ss_pred CchhHHHHHHHHHHHhccC-----Ccc--cHHHHHHHHHHcCC
Q 023444 64 AHGGYTFCGLAAMILINEA-----DRL--DLDALIGWVVFRQG 99 (282)
Q Consensus 64 sh~~~TycAl~~L~lLg~~-----~~i--d~~~~~~wl~~~Q~ 99 (282)
+.+..|..++.+|.-.|.. +.. .+.+.++||.+.+.
T Consensus 391 ~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~ 433 (915)
T 2hr0_B 391 KDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYM 433 (915)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGG
T ss_pred cccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhh
Confidence 3455666677777665542 111 34577899988764
No 23
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=96.98 E-value=0.0015 Score=70.39 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=68.7
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccCCCCcccCCCC-------C--CCchh
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI----LDDELLQNVGNYILSCQTYEGGIAGEPG-------S--EAHGG 67 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~----~~~~~~~~~~~~I~scq~~dGGF~~~p~-------~--esh~~ 67 (282)
+|++||||...+++..+...|-+++.+|..+.. .+....++.++||.+.|.+||.|.+... + .....
T Consensus 884 ~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~ 963 (1325)
T 2pn5_A 884 YRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVA 963 (1325)
T ss_dssp GBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHH
T ss_pred cCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCcc
Confidence 589999999888888999999999999998864 3445578899999999999999865421 1 12333
Q ss_pred HHHHHHHHHHHhccCC---cccHHHHHHHHHHcCC
Q 023444 68 YTFCGLAAMILINEAD---RLDLDALIGWVVFRQG 99 (282)
Q Consensus 68 ~TycAl~~L~lLg~~~---~id~~~~~~wl~~~Q~ 99 (282)
+|..++++|.-.+... ...+++.++||.++|.
T Consensus 964 ~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~ 998 (1325)
T 2pn5_A 964 LTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFG 998 (1325)
T ss_dssp HHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhc
Confidence 4433333333222221 1246678899998875
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=96.86 E-value=0.008 Score=65.57 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=68.8
Q ss_pred CcchHHHHHHHHHHHHHhC---CCCHHHHH-------HHHHHHHhccCCCCcccCCCC----CCCchhHHHHHHHHHHHh
Q 023444 14 GEIDVRACYTAISVASILN---ILDDELLQ-------NVGNYILSCQTYEGGIAGEPG----SEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~~~~~~~~-------~~~~~I~scq~~dGGF~~~p~----~esh~~~TycAl~~L~lL 79 (282)
+|..|...+=.+.++..|+ .++++.++ +.++|+++.|++||||+.-+. .+++...|-.++-.|...
T Consensus 950 ~EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a 1029 (1451)
T 4acq_A 950 GEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQA 1029 (1451)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHh
Confidence 5777777777676666664 45544433 456899999999999997754 568888888888888877
Q ss_pred ccCCccc---HHHHHHHHHHcCCCCcccc
Q 023444 80 NEADRLD---LDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 80 g~~~~id---~~~~~~wl~~~Q~~dGGF~ 105 (282)
...-.+| .++.++||.+.|.+||+|.
T Consensus 1030 ~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~ 1058 (1451)
T 4acq_A 1030 RAYIFIDEAHITQALIWLSQRQKDNGCFR 1058 (1451)
T ss_dssp TTTSCCCTHHHHHHHHHHHHTEETTTEEC
T ss_pred hhhcccCHHHHHHHHHHHHhhcccCCccc
Confidence 6532233 6678899999999999998
No 25
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=96.71 E-value=0.0053 Score=63.89 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred CcchHHHHHHHHHHHHHhCCC------CHHHHH-------HHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILNIL------DDELLQ-------NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~------~~~~~~-------~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|..|...+-.+.++..|+.. .+..++ +-++++++.|++||||+.-++.+++...|-.++-.|..+.
T Consensus 263 ~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~ 342 (915)
T 2hr0_B 263 GEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAV 342 (915)
T ss_dssp TTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhh
Confidence 466666555555555555432 122233 3455688899999999998888888888877888777776
Q ss_pred cCCccc---HHHHHHHHHH-cCCCCcccccc
Q 023444 81 EADRLD---LDALIGWVVF-RQGVEGGFQGR 107 (282)
Q Consensus 81 ~~~~id---~~~~~~wl~~-~Q~~dGGF~gr 107 (282)
....++ .++.++||.+ +|.++|+|.++
T Consensus 343 ~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 343 NLIAIDSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred hcCCCCHHHHHHHHHHHHHhhccCCCccccC
Confidence 443344 5678899995 99999999754
No 26
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=96.67 E-value=0.0022 Score=61.06 Aligned_cols=84 Identities=18% Similarity=0.008 Sum_probs=62.6
Q ss_pred CcchHHHHHHHHHHHHHhCCCC-----HHHHH----HHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccCCc
Q 023444 14 GEIDVRACYTAISVASILNILD-----DELLQ----NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 84 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~~~-----~~~~~----~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~~~ 84 (282)
+..|+-.+=.|+.+|.-++... ....+ .++++|++-|.+||+|| +..+|--|+++|...+....
T Consensus 174 ~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~ 246 (414)
T 2bb6_A 174 DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSV 246 (414)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCH
T ss_pred CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcc
Confidence 3457777777888888876421 12233 44589999999999997 56778888888888876432
Q ss_pred c---cHHHHHHHHHHcCCCCcccc
Q 023444 85 L---DLDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 85 i---d~~~~~~wl~~~Q~~dGGF~ 105 (282)
. +..+.++||++ |..||+|.
T Consensus 247 ~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 247 ELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred cccchHHHHHHHHHH-hccCCCCC
Confidence 2 56778999998 99999997
No 27
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=95.75 E-value=0.033 Score=60.75 Aligned_cols=97 Identities=9% Similarity=0.017 Sum_probs=71.7
Q ss_pred CCCCCCCeeecCC----CcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCCCCcccCCC---------CCCC
Q 023444 1 MKDPSGAFRMHDA----GEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEP---------GSEA 64 (282)
Q Consensus 1 ~~~~dG~F~~~~~----ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~scq~~dGGF~~~p---------~~es 64 (282)
+|++||||..-.. ++.+.+.|=+++-.|..... .++...++.++||.+.|.+||.|...- |.+.
T Consensus 995 ~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~ 1074 (1451)
T 4acq_A 995 YKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVED 1074 (1451)
T ss_dssp GBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSC
T ss_pred hcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCC
Confidence 5899999985542 56788888888888887764 345567888999999999999997421 2246
Q ss_pred chhHHHHHHHHHHHhccCC-cccHHHHHHHHHHc
Q 023444 65 HGGYTFCGLAAMILINEAD-RLDLDALIGWVVFR 97 (282)
Q Consensus 65 h~~~TycAl~~L~lLg~~~-~id~~~~~~wl~~~ 97 (282)
++..|-.++.+|...|... ..-+++.++||.+.
T Consensus 1075 ~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1075 EVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 6778888888888777532 12356788898765
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.72 E-value=0.043 Score=55.74 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCCCCcccCC------------CCCCCc
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGE------------PGSEAH 65 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~scq~~dGGF~~~------------p~~esh 65 (282)
+|++||||..-.+...+++.|=+++-.+...... ++....+.+.|+.+.|.+||.|... .+.+..
T Consensus 380 ~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~ 459 (767)
T 4fxk_B 380 FRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET 459 (767)
T ss_dssp TBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHH
T ss_pred hhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccc
Confidence 5899999998777788999999999999888754 4566778889999999999998632 111334
Q ss_pred hhHHHHHHHHHHHhccCC--c----------ccHHHHHHHHHHcC
Q 023444 66 GGYTFCGLAAMILINEAD--R----------LDLDALIGWVVFRQ 98 (282)
Q Consensus 66 ~~~TycAl~~L~lLg~~~--~----------id~~~~~~wl~~~Q 98 (282)
+..|...+.+|.-.+... . ..+.+.++||....
T Consensus 460 ~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~ 504 (767)
T 4fxk_B 460 VALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKA 504 (767)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHh
Confidence 555655555554333211 0 12456677886554
No 29
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.49 E-value=0.058 Score=54.79 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHHHHhC---C---CCHHHHHHHHHH-------HHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILN---I---LDDELLQNVGNY-------ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~---~~~~~~~~~~~~-------I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|..|...+-.+.++..|+ . +.+..+++..++ +++.|++||||+.-++.+++...|-.++-+|....
T Consensus 332 ~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~ 411 (767)
T 4fxk_B 332 GEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQ 411 (767)
T ss_dssp TTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTC
T ss_pred hhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHH
Confidence 4666655555555555553 2 333344444444 45678999999999988999999988888888877
Q ss_pred cCCccc---HHHHHHHHHHcCCCCcccc
Q 023444 81 EADRLD---LDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 81 ~~~~id---~~~~~~wl~~~Q~~dGGF~ 105 (282)
....+| ..+.++||.+.|.++|.|.
T Consensus 412 ~~i~id~~~i~~a~~wL~~~Q~~~G~f~ 439 (767)
T 4fxk_B 412 EQVGGSPEKLQETSNWLLSQQQADGSFQ 439 (767)
T ss_dssp SSSSCCHHHHHHHHHHHHHTBCTTSCBC
T ss_pred hhcCcchHHHHHHHHHHHHhhhhcccch
Confidence 654454 4567899999999999996
No 30
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=95.45 E-value=0.06 Score=59.44 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred CcchHHHHHHHHHHHHHhC---CCC---HHHHHHHHHH-------HHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILN---ILD---DELLQNVGNY-------ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~~~---~~~~~~~~~~-------I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|..|...+-.+.++..|+ .++ +..+++++++ +++.|++||||+.-++.+++...|-.++-.|..+.
T Consensus 1010 ~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~ 1089 (1661)
T 2b39_A 1010 GEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAA 1089 (1661)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhh
Confidence 4666665555555554443 332 3445555555 44678999999998888899999988888888877
Q ss_pred cCCccc---HHHHHHHHHH-cCCCCcccc
Q 023444 81 EADRLD---LDALIGWVVF-RQGVEGGFQ 105 (282)
Q Consensus 81 ~~~~id---~~~~~~wl~~-~Q~~dGGF~ 105 (282)
..-.+| .++.++||.+ +|..+|.|.
T Consensus 1090 ~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1118 (1661)
T 2b39_A 1090 NLIAIDSKDLCETVKWLILEKQKPDGIFQ 1118 (1661)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTBCTTSCBC
T ss_pred hcccCCHHHHHHHHHHhhHhhCCCCCccc
Confidence 544444 4677899995 999999995
No 31
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=95.22 E-value=0.064 Score=50.76 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhCC---CC---------HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhccC-C
Q 023444 17 DVRACYTAISVASILNI---LD---------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA-D 83 (282)
Q Consensus 17 d~r~~y~av~~l~lL~~---~~---------~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg~~-~ 83 (282)
++-.+=.|+.+|.-+.. .. ..-.++++++|++.|++||+|| ++.+|=-|+++|...+.. .
T Consensus 151 sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~ 223 (399)
T 2pmv_A 151 NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSK 223 (399)
T ss_dssp CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCS
T ss_pred cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCcc
Confidence 55555556666666654 11 1235678899999999999997 788998899999888863 1
Q ss_pred cc-cHHHHHHHHHHcCCCCcccc
Q 023444 84 RL-DLDALIGWVVFRQGVEGGFQ 105 (282)
Q Consensus 84 ~i-d~~~~~~wl~~~Q~~dGGF~ 105 (282)
.- +..+.++||++ |..+|+|.
T Consensus 224 ~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 224 KEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp SCCCHHHHHHHHHH-HHTTTTTC
T ss_pred ccccHHHHHHHHHH-HhhCCCcC
Confidence 22 78899999998 88999997
No 32
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=94.82 E-value=0.12 Score=57.02 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=69.4
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh-ccCCCCcccCCC--------C-----CC
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILS-CQTYEGGIAGEP--------G-----SE 63 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~---~~~~~~~~~~~I~s-cq~~dGGF~~~p--------~-----~e 63 (282)
+|++||||..-.+++.+.+.|=+++-.|..+... ++...++.++||.+ .|.++|.|.... + .+
T Consensus 1058 ~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~ 1137 (1661)
T 2b39_A 1058 FRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTRE 1137 (1661)
T ss_dssp TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTT
T ss_pred hhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCcccccc
Confidence 5899999997777788999999999998888653 45567888999995 999999986321 1 22
Q ss_pred CchhHHHHHHHHHHHhccC-----Ccc--cHHHHHHHHHHcC
Q 023444 64 AHGGYTFCGLAAMILINEA-----DRL--DLDALIGWVVFRQ 98 (282)
Q Consensus 64 sh~~~TycAl~~L~lLg~~-----~~i--d~~~~~~wl~~~Q 98 (282)
+++..|..++.+|.--+.. +.. .+.+.++||.+..
T Consensus 1138 ~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~ 1179 (1661)
T 2b39_A 1138 KDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHY 1179 (1661)
T ss_dssp SSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhh
Confidence 3666666666666554432 111 3456788987653
No 33
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=93.94 E-value=0.033 Score=51.42 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCCCCCeeec-------------CCCcchHHHHHHHHHHHHHhCCC--CH---HHHHHHHHHHHhccCCCCcccCC-CCC
Q 023444 2 KDPSGAFRMH-------------DAGEIDVRACYTAISVASILNIL--DD---ELLQNVGNYILSCQTYEGGIAGE-PGS 62 (282)
Q Consensus 2 ~~~dG~F~~~-------------~~ge~d~r~~y~av~~l~lL~~~--~~---~~~~~~~~~I~scq~~dGGF~~~-p~~ 62 (282)
|+++|||.-. .....|...|..++..|.-+... ++ .-.++.++||++.|.++||+.+. |..
T Consensus 44 Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~ 123 (332)
T 1gxm_A 44 QQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLK 123 (332)
T ss_dssp CCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCC
T ss_pred CcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCCc
Confidence 7888888510 12345777777777777654321 11 23467889999999999999874 211
Q ss_pred -CCchh------HHHHHHHHHHHhcc----CC----------c--ccHHHHHHHHHHcCCCCcccccc
Q 023444 63 -EAHGG------YTFCGLAAMILINE----AD----------R--LDLDALIGWVVFRQGVEGGFQGR 107 (282)
Q Consensus 63 -esh~~------~TycAl~~L~lLg~----~~----------~--id~~~~~~wl~~~Q~~dGGF~gr 107 (282)
.-|-. -|--.|-.|..++. .. + .-+++-++||++.|.++||-.++
T Consensus 124 ~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~ 191 (332)
T 1gxm_A 124 GGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV 191 (332)
T ss_dssp SGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC
T ss_pred ccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe
Confidence 11111 23234444444432 10 1 12567899999999999987765
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=93.07 E-value=0.082 Score=50.26 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=39.7
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhccCCCCccc
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILDDE---LLQNVGNYILSCQTYEGGIA 57 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~---~~~~~~~~I~scq~~dGGF~ 57 (282)
|++||+|. ++..|-.|+.+|...+..... +..+.++||++ |..||+|.
T Consensus 219 Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 219 QTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp BCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred hcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 78999995 567788899998888765433 67788999999 99999997
No 35
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=92.92 E-value=0.15 Score=56.38 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHHHHHHhC---C------CCHHHHHHHHHHH-------HhccCCCCcccCCCCCCCchhHHHHHHHHHH
Q 023444 14 GEIDVRACYTAISVASILN---I------LDDELLQNVGNYI-------LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 77 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~---~------~~~~~~~~~~~~I-------~scq~~dGGF~~~p~~esh~~~TycAl~~L~ 77 (282)
+|..|...+-.+.++..|+ . ..+..+++.+++| ++.|++||||+.-++.+++...|-.++-.|.
T Consensus 1008 ~EQ~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~ 1087 (1676)
T 3cu7_A 1008 AEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLG 1087 (1676)
T ss_dssp SHHHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHH
Confidence 4555555555555555553 2 1122455666654 4578999999998888899999988999888
Q ss_pred HhccCCccc---HHHHHHHHHH-cCCCCcccc
Q 023444 78 LINEADRLD---LDALIGWVVF-RQGVEGGFQ 105 (282)
Q Consensus 78 lLg~~~~id---~~~~~~wl~~-~Q~~dGGF~ 105 (282)
.+...-.+| .++.++||.+ +|..+|.|.
T Consensus 1088 ~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1088 QVNKYVEQNQNSICNSLLWLVENYQLDNGSFK 1119 (1676)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhCCCCCccc
Confidence 876543444 4678899998 999999995
No 36
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=92.47 E-value=0.12 Score=57.07 Aligned_cols=97 Identities=10% Similarity=0.063 Sum_probs=65.8
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHh-ccCCCCcccCCC---CC-----------
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILS-CQTYEGGIAGEP---GS----------- 62 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~---~~~~~~~~~~~~I~s-cq~~dGGF~~~p---~~----------- 62 (282)
+|++||||..-.+++.+.+.|=+++-.|..+.. .++...++.++||.+ .|.++|.|.... ..
T Consensus 1059 ~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~ 1138 (1676)
T 3cu7_A 1059 YRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEAR 1138 (1676)
T ss_dssp GBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHH
T ss_pred ccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccc
Confidence 489999999777778899999999998888764 345567788999999 999999986421 11
Q ss_pred CCchhHHHHHHHHHHHhccC---Ccc--cHHHHHHHHHHc
Q 023444 63 EAHGGYTFCGLAAMILINEA---DRL--DLDALIGWVVFR 97 (282)
Q Consensus 63 esh~~~TycAl~~L~lLg~~---~~i--d~~~~~~wl~~~ 97 (282)
++++..|..++.+|.--+.. ... .+.+.++||.+.
T Consensus 1139 ~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1139 ENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 12344555555555443332 111 245677888665
No 37
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=91.48 E-value=0.035 Score=61.25 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHhCC---CC---HHHHHHHHHHH-------HhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444 14 GEIDVRACYTAISVASILNI---LD---DELLQNVGNYI-------LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 80 (282)
Q Consensus 14 ge~d~r~~y~av~~l~lL~~---~~---~~~~~~~~~~I-------~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg 80 (282)
+|..|...+=.+.++..|+. ++ ++.++++.++| ++.|++||||+.-.+.+++.+.|-.++-.|....
T Consensus 994 gEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~ 1073 (1642)
T 3prx_B 994 GEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAA 1073 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHH
Confidence 45566555555566666643 22 33455566665 4467899999988777788888877777777665
Q ss_pred cCCc-cc---HHHHHHHHHH-cCCCCcccc
Q 023444 81 EADR-LD---LDALIGWVVF-RQGVEGGFQ 105 (282)
Q Consensus 81 ~~~~-id---~~~~~~wl~~-~Q~~dGGF~ 105 (282)
+.-. || ..+.++||.+ +|.+||.|.
T Consensus 1074 ~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~ 1103 (1642)
T 3prx_B 1074 KMVAGISHEIICGGVRWLILNRQQPDGAFK 1103 (1642)
T ss_dssp ------------------------------
T ss_pred hhccCCCHHHHHHHHHHHHhhccCCCCccc
Confidence 4322 43 5678899987 899999995
No 38
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=90.64 E-value=0.42 Score=45.24 Aligned_cols=91 Identities=20% Similarity=0.053 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHHHhCCC-----CH---HHHHHHHHHHHhccCCCCcccCCC-CC-CCchh------HHHHHHHHHHH
Q 023444 15 EIDVRACYTAISVASILNIL-----DD---ELLQNVGNYILSCQTYEGGIAGEP-GS-EAHGG------YTFCGLAAMIL 78 (282)
Q Consensus 15 e~d~r~~y~av~~l~lL~~~-----~~---~~~~~~~~~I~scq~~dGGF~~~p-~~-esh~~------~TycAl~~L~l 78 (282)
..|...|..++..|.-+... ++ .-.++-++||++.|.++||+.+.- .. .-|-. -|--.|-.|..
T Consensus 145 T~DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~ 224 (408)
T 1r76_A 145 TIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSD 224 (408)
T ss_dssp BCGGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHH
Confidence 45666777777777665332 11 224577899999999999998632 11 11111 12223333333
Q ss_pred hccC----Cc----------ccHHHHHHHHHHcCCC-Ccccc
Q 023444 79 INEA----DR----------LDLDALIGWVVFRQGV-EGGFQ 105 (282)
Q Consensus 79 Lg~~----~~----------id~~~~~~wl~~~Q~~-dGGF~ 105 (282)
++.. .. .-+++-++||++.|.+ ||.-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~ 266 (408)
T 1r76_A 225 IAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL 266 (408)
T ss_dssp HHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred HHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc
Confidence 3331 11 1256889999999998 88776
No 39
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=90.00 E-value=0.058 Score=59.56 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHh-ccCCCCcccC
Q 023444 1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNI----LDDELLQNVGNYILS-CQTYEGGIAG 58 (282)
Q Consensus 1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~----~~~~~~~~~~~~I~s-cq~~dGGF~~ 58 (282)
+|++||||..-.+.+.+.+.|=+++-.+..... .++....+.++||.+ +|.+||.|..
T Consensus 1042 yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1042 YKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp ---------------------------------------------------------------
T ss_pred hcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence 488999998766667888888888888877764 344456788999997 9999999964
No 40
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=86.59 E-value=1.6 Score=41.20 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCC-CCccc-CCC----C---------CCCchhHHHHHH-HHHHHhccCCcc-----cHHHHHHHHHHc
Q 023444 39 LQNVGNYILSCQTY-EGGIA-GEP----G---------SEAHGGYTFCGL-AAMILINEADRL-----DLDALIGWVVFR 97 (282)
Q Consensus 39 ~~~~~~~I~scq~~-dGGF~-~~p----~---------~esh~~~TycAl-~~L~lLg~~~~i-----d~~~~~~wl~~~ 97 (282)
.++.++||+++|-+ ||..- ..- + .|.-...+.-++ ..+.|++....- -+++.++||.+.
T Consensus 247 v~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~ 326 (408)
T 1r76_A 247 TNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTS 326 (408)
T ss_dssp HHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHh
Confidence 56789999999998 88532 111 1 111111222222 223344432211 267899999999
Q ss_pred CCCCcccc
Q 023444 98 QGVEGGFQ 105 (282)
Q Consensus 98 Q~~dGGF~ 105 (282)
|.++|+..
T Consensus 327 Q~~dg~w~ 334 (408)
T 1r76_A 327 VIRDRAWV 334 (408)
T ss_dssp CCCC----
T ss_pred hcCCCcee
Confidence 99999887
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=85.86 E-value=1 Score=42.56 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=49.6
Q ss_pred CCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHh
Q 023444 2 KDPSGAFRMHDAGEIDVRACYTAISVASILNILD-DE-LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 79 (282)
Q Consensus 2 ~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~-~~-~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lL 79 (282)
|++||+|. |++.|=.|+.+|...+... .. +..+.++||++ |..||+|+ +. ..+.++|-.|
T Consensus 196 q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np---~~taQilPaL 257 (399)
T 2pmv_A 196 IKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NP---MSIAQILPSL 257 (399)
T ss_dssp BCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SH---HHHHHHHHHH
T ss_pred hcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CH---HHHHHHHHHh
Confidence 78899994 7999999999999988631 22 67889999999 99999996 22 3445555555
Q ss_pred ccCCcccH
Q 023444 80 NEADRLDL 87 (282)
Q Consensus 80 g~~~~id~ 87 (282)
......|+
T Consensus 258 ~~ktyldv 265 (399)
T 2pmv_A 258 KGKTYLDV 265 (399)
T ss_dssp TTCCGGGG
T ss_pred cCCCccCc
Confidence 44454554
No 42
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=74.60 E-value=2.1 Score=39.38 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCCCcccCCCC-------------CCCchhHHHHHHHHHHHhccCC---cc--cHHHHHHHHHHcCCCCc
Q 023444 41 NVGNYILSCQTYEGGIAGEPG-------------SEAHGGYTFCGLAAMILINEAD---RL--DLDALIGWVVFRQGVEG 102 (282)
Q Consensus 41 ~~~~~I~scq~~dGGF~~~p~-------------~esh~~~TycAl~~L~lLg~~~---~i--d~~~~~~wl~~~Q~~dG 102 (282)
.+.+-|++-|.++||+.-+.. .-.|...|...|..|.-+...+ .. -+++-++||++.|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 357889999999999885311 1245666777777776543211 11 25688999999999999
Q ss_pred ccccc
Q 023444 103 GFQGR 107 (282)
Q Consensus 103 GF~gr 107 (282)
|+...
T Consensus 115 GWpqF 119 (332)
T 1gxm_A 115 ALPQF 119 (332)
T ss_dssp CCBSE
T ss_pred Ccccc
Confidence 99754
No 43
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=60.70 E-value=10 Score=38.62 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCCc--hhHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 023444 38 LLQNVGNYILSCQTYEGGIAGEPGSEAH--GGYTFCGLAAMILINEADRLDLDALIGWVV 95 (282)
Q Consensus 38 ~~~~~~~~I~scq~~dGGF~~~p~~esh--~~~TycAl~~L~lLg~~~~id~~~~~~wl~ 95 (282)
...++++||++-|.+||+.|...+.... +..|-+||.+|.--+.-+ -.+++-++||.
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~ 112 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGH-SQVQQGAEFIA 112 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHH
Confidence 4678999999999999999854332222 667888888877644211 13455566664
No 44
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=60.59 E-value=10 Score=38.43 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCc--hhHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 023444 39 LQNVGNYILSCQTYEGGIAGEPGSEAH--GGYTFCGLAAMILINEADRLDLDALIGWVVF 96 (282)
Q Consensus 39 ~~~~~~~I~scq~~dGGF~~~p~~esh--~~~TycAl~~L~lLg~~~~id~~~~~~wl~~ 96 (282)
..++++||++-|.+||+.|...+.... +..|-+||.+|.--+.- .-.+++-+.||.+
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fl~~ 110 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF-PHQCNKGITFFRE 110 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHH
Confidence 578899999999999999863322222 67888888887763311 1124455566653
No 45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=60.27 E-value=12 Score=38.35 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCC-Cc-hhHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 023444 38 LLQNVGNYILSCQTYEGGIAGEPGSE-AH-GGYTFCGLAAMILINEADRLDLDALIGWVVF 96 (282)
Q Consensus 38 ~~~~~~~~I~scq~~dGGF~~~p~~e-sh-~~~TycAl~~L~lLg~~~~id~~~~~~wl~~ 96 (282)
...++++||++-|.+||+.|...... .+ +..|-+||.+|.--+.-+ -.+++-++||.+
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~ 134 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE-TQVQKGIEFFRT 134 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH-HHHHHHHHHHHH
Confidence 34789999999999999998653322 24 778988888887654211 234555666653
No 46
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=59.11 E-value=13 Score=38.20 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCCc--hhHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 023444 37 ELLQNVGNYILSCQTYEGGIAGEPGSEAH--GGYTFCGLAAMILINEADRLDLDALIGWVVF 96 (282)
Q Consensus 37 ~~~~~~~~~I~scq~~dGGF~~~p~~esh--~~~TycAl~~L~lLg~~~~id~~~~~~wl~~ 96 (282)
....++++||++-|.+||+.|...+.... +..|-+||.+|.--+.-+ -.+++-++||.+
T Consensus 101 p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~ 161 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGD-LQVEQGIEFIKS 161 (817)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHH
Confidence 34578999999999999999854332222 667888888887644211 124455566653
No 47
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=33.15 E-value=25 Score=20.30 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCchh
Q 023444 206 PRGGLRDKLRKPRDYYH 222 (282)
Q Consensus 206 ~~GGf~grp~k~~D~cy 222 (282)
.+|||.-.|+|.-|-|.
T Consensus 5 enggfcpdpekmgdwcc 21 (32)
T 4b2v_A 5 ENGGFCPDPEKMGDWCC 21 (32)
T ss_dssp CTTCBCCCTTTTCCCCS
T ss_pred hcCCcCCChHHhcchhh
Confidence 47999999999998763
Done!