BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023448
MSASINFSGQAQTQRLCFRALGGNGIVLNSLPSKISCQLMQNTSKIEHHGISIRSLAKCK
PSTLVPSASDDSIEIVPFSASNTIREFYACINEKNLERLETYISDDCCFEDCSFPKPFQG
KKEVMQFLEQLVTSMGQNVKFSVEQVCEGDEFTAGINWHLEWKGKQVPFTRGCSFYECSL
EGETLLIKKARVVIESPIKPGGIVLTLLKNLTSLSDDFPKATEWLLNSPHVISTFLLKAY
TIFLAPFVRPILAGYINMWNFIARLLGLAFNILIYILKIFSK

High Scoring Gene Products

Symbol, full name Information P value
AT5G41470 protein from Arabidopsis thaliana 1.6e-56
AT1G71480 protein from Arabidopsis thaliana 1.5e-28
AT4G22370 protein from Arabidopsis thaliana 0.00014

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023448
        (282 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2177906 - symbol:AT5G41470 "AT5G41470" species...   582  1.6e-56   1
TAIR|locus:2825304 - symbol:AT1G71480 species:3702 "Arabi...   318  1.5e-28   1
TAIR|locus:2132070 - symbol:AT4G22370 "AT4G22370" species...    98  0.00014   1


>TAIR|locus:2177906 [details] [associations]
            symbol:AT5G41470 "AT5G41470" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 InterPro:IPR009959
            Pfam:PF12680 IPI:IPI00544065 RefSeq:NP_198962.2 UniGene:At.55297
            ProteinModelPortal:F4JYE8 EnsemblPlants:AT5G41470.1 GeneID:834148
            KEGG:ath:AT5G41470 OMA:MGQNVKF Uniprot:F4JYE8
        Length = 277

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 107/204 (52%), Positives = 144/204 (70%)

Query:    79 SASNTIREFYACINEKNLERLETYISDDCCFEDCSFPKPFQGKKEVMQFLEQLVTSMGQN 138
             S  + + +FY+ INEKN ++L + IS DC  +D SFPKPF+GK+E M+F E+LV SMGQN
Sbjct:    74 SGYDAVMKFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEAMEFFEELVKSMGQN 133

Query:   139 VKFSVEQVCEGDEFTAGINWHLEWKGKQVPFTRGCSFYECSLEGETLLIKKARVVIESPI 198
             VKF VE VCEGD  +A +NWHLEWKG+++PFTRGCSFYE   EG  L+I+ AR++IESPI
Sbjct:   134 VKFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGRLVIRNARILIESPI 193

Query:   199 KPGGIVLTLLKNLTSLSDDFPKATEWLLNSPHVISTFLLKAYTIFLAPFVRPILAGYINM 258
             KPGGI L+LLKN+T L D+FPK  E  L  P+ I    ++ Y +FLAP +  ++A Y+ +
Sbjct:   194 KPGGITLSLLKNITFLFDEFPKGAELFLEKPYAIIQAAIRIYGLFLAPLINHVMASYLKL 253

Query:   259 WNFIARLLGLAFNILIYILKIFSK 282
              + +A    L   I+I I  +F K
Sbjct:   254 LSNMAEFFLLVVKIIIKIRNLFFK 277


>TAIR|locus:2825304 [details] [associations]
            symbol:AT1G71480 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006606 "protein import into nucleus"
            evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0008565
            "protein transporter activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] InterPro:IPR002075 Pfam:PF02136 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006810 EMBL:AC016163 GO:GO:0009535
            UniGene:At.43507 UniGene:At.75242 EMBL:BT010641 EMBL:AK175810
            EMBL:AK175869 EMBL:AK176645 EMBL:AK176822 EMBL:AK176871
            EMBL:AK316764 IPI:IPI00540601 RefSeq:NP_177304.1
            ProteinModelPortal:Q9C9I5 SMR:Q9C9I5 IntAct:Q9C9I5 STRING:Q9C9I5
            PRIDE:Q9C9I5 EnsemblPlants:AT1G71480.1 GeneID:843489
            KEGG:ath:AT1G71480 TAIR:At1g71480 eggNOG:NOG300686
            HOGENOM:HOG000243032 InParanoid:Q9C9I5 OMA:CVEPAIK PhylomeDB:Q9C9I5
            ArrayExpress:Q9C9I5 Genevestigator:Q9C9I5 Uniprot:Q9C9I5
        Length = 216

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/201 (33%), Positives = 106/201 (52%)

Query:    26 IVLNSLPSK--ISCQLMQNTSKIEHHGISIRSLAKCKPSTLVPSASDDSIEIVPFSASNT 83
             + LN LP    +  +L++ TS    H    R  A   P+    +A+D   E  P SAS  
Sbjct:    17 VSLNHLPPSFFLPTKLVKPTSLT--HSQPPRLSASYGPAAKAATANDVVPETAPTSASEV 74

Query:    84 IREFYACINEKNLERLETYISDDCCFEDCSFPKPFQGKKEVMQFLEQLVTSMGQNVKFSV 143
             +  FYA +N  +L  +   I+ DC +ED  F  PF G+K ++ F  + + S   +++F +
Sbjct:    75 VSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFGKFIESTSTDLQFVI 134

Query:   144 EQVCEGDEFTAGINWHLEWKGKQVPFTRGCSFYECS-LEGETLLIKKARVVIESPIKPGG 202
             + +   D    G++WHLEWKGK  PF++GCSFY    ++G+  ++   R  +E  IKPG 
Sbjct:   135 DDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQIVY-GRDCVEPAIKPGE 193

Query:   203 IVLTLLKNLTSLSDDFPKATE 223
              VL  +K +T L   FP+  +
Sbjct:   194 TVLAAIKGVTWLLQKFPQLAD 214


>TAIR|locus:2132070 [details] [associations]
            symbol:AT4G22370 "AT4G22370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AY924820 IPI:IPI00539375
            RefSeq:NP_193968.2 UniGene:At.21353 UniGene:At.70102
            EnsemblPlants:AT4G22370.1 GeneID:828332 KEGG:ath:AT4G22370
            TAIR:At4g22370 HOGENOM:HOG000137612 OMA:MEPIFHI PhylomeDB:Q5BPK8
            ProtClustDB:CLSN2920340 Genevestigator:Q5BPK8 Uniprot:Q5BPK8
        Length = 130

 Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query:   125 MQFLEQLVTSMGQNVKFSVEQVCEGDEFTAGINWHLEWKGKQVPFTRGCSFYECSLEGET 184
             M F   L+  +G+++K  V+   + D  T G+ W LE     +   +G SF+ C +    
Sbjct:     1 MAFFYWLIMKLGKDIKIIVKPTFK-DGMTVGVQWQLECDKSHIQLGKGFSFHICHMYQGK 59

Query:   185 LLIKKARVVIESPI 198
             LLIK   + +E PI
Sbjct:    60 LLIKNVEMFME-PI 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       282   0.00083  115 3  11 22  0.46    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  217 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.24u 0.11s 24.35t   Elapsed:  00:00:02
  Total cpu time:  24.24u 0.11s 24.35t   Elapsed:  00:00:02
  Start:  Fri May 10 03:22:08 2013   End:  Fri May 10 03:22:10 2013

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