BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023448
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F8X|A Chain A, Crystal Structure Of A Putative Delta-5-3-ketosteroid
           Isomerase (eca2236) From Pectobacterium Atrosepticum
           Scri1043 At 1.55 A Resolution
 pdb|3F8X|B Chain B, Crystal Structure Of A Putative Delta-5-3-ketosteroid
           Isomerase (eca2236) From Pectobacterium Atrosepticum
           Scri1043 At 1.55 A Resolution
 pdb|3F8X|C Chain C, Crystal Structure Of A Putative Delta-5-3-ketosteroid
           Isomerase (eca2236) From Pectobacterium Atrosepticum
           Scri1043 At 1.55 A Resolution
 pdb|3F8X|D Chain D, Crystal Structure Of A Putative Delta-5-3-ketosteroid
           Isomerase (eca2236) From Pectobacterium Atrosepticum
           Scri1043 At 1.55 A Resolution
          Length = 148

 Score = 31.6 bits (70), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 84  IREFYACINEKNLERLETYISDDCCFEDCSFPKPFQGKK-------------EVMQFLEQ 130
           ++E++  I E + ERL   +++D  F + S   P+ GK              E  Q+   
Sbjct: 26  LQEWHRIIAEADWERLPDLLAEDVVFSNPSTFDPYHGKGPLXVILPAVFSVLENFQYARH 85

Query: 131 LVTSMGQNVKFSVEQVCEGDEFTAGIN 157
             +  G  ++F+      GDE   G++
Sbjct: 86  FSSKSGYVLEFNANX---GDELLTGVD 109


>pdb|3E99|A Chain A, Crystal Structure Of The Beta Subunit Of The Benzoate
           1,2-dioxygenase (benb, Bmaa0186) From Burkholderia
           Mallei Atcc 23344 At 1.90 A Resolution
          Length = 164

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 133 TSMGQNVKFSVEQVCEGDEFTAGINWH-LEWKGKQVPFTRGCSFYECSLEGETLLIKKAR 191
           T    N+     +  +GD  T   NWH L ++ K V    G S Y     G+   I    
Sbjct: 88  TRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGXSRYAIDFSGDAPKIVSKY 147

Query: 192 VVIES 196
           VV+++
Sbjct: 148 VVLKN 152


>pdb|4I1M|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb
 pdb|4I1M|B Chain B, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb
 pdb|4I1M|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb
 pdb|4I1O|B Chain B, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|D Chain D, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|F Chain F, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|H Chain H, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
          Length = 302

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 82  NTIREFYACINEKNLERLETYISDDCCFEDCSFPKP 117
           N   EF+  I+EK L ++  Y     C E+ + PKP
Sbjct: 216 NKESEFFYPIDEKALAKMNGYQLATICLEELNSPKP 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,065,655
Number of Sequences: 62578
Number of extensions: 309274
Number of successful extensions: 556
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 3
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)