BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023448
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q97JM5|MINC_CLOAB Probable septum site-determining protein MinC OS=Clostridium
           acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
           LMG 5710 / VKM B-1787) GN=minC PE=3 SV=1
          Length = 211

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 91  INEKNLERLETYISDDCCFEDCSFPKPFQGKKEVM--------QFLEQLVTSMGQNVKFS 142
           INE+N  +L+  + D+   +DC F    + K +V         +FL + V S GQ +K+S
Sbjct: 59  INERNTRKLKDILFDEFLIKDCIFEDSDENKSKVFSGIYEGRTKFLRRTVRS-GQIIKYS 117

Query: 143 -----VEQVCEGDEFTAGIN 157
                V  V  G E  AG N
Sbjct: 118 GNVVIVGDVNPGSEIYAGGN 137


>sp|Q08238|YO079_YEAST Putative uncharacterized membrane protein YOL079W OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YOL079W PE=5
           SV=1
          Length = 132

 Score = 31.6 bits (70), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 191 RVVIESPIKPGGIVLTLLKNLTSL-SDDFPKATEWLLNSPHVISTFLLKAYTIFLAPFVR 249
           RV  E P   G +++ L+  L  L S+ FP +  +   S  +IS F+L   +I L PF+R
Sbjct: 16  RVSSEIPTFTGSLIVVLVFALFGLNSNTFPSSLSF---SCLLISLFMLYTMSIILLPFLR 72

Query: 250 PILAGYINMWNFIARLLGLAFNILIY 275
              A ++ +  F   L  L F I ++
Sbjct: 73  FRGAYWVVLLTFTVLLTFLTFLIFLF 98


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,391,791
Number of Sequences: 539616
Number of extensions: 3981450
Number of successful extensions: 8378
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8378
Number of HSP's gapped (non-prelim): 2
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)