BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023449
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To
Carboxyethyllumazine
Length = 208
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 143/210 (68%), Gaps = 5/210 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTG+VE +G ++ + + D GF MKI A +L+ H GDSIAVNGTCLTVT+F
Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDF--DRYH 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
FTVG++PE+LR T+L + + G VNLERAV ++RMGGHFVQGHVD IV + + ++
Sbjct: 59 FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 118
Query: 193 LWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
+ + D +LKYIV KG+IA+DGTSLT+ V ++ F+ M+++YTQ KV++ K V
Sbjct: 119 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNV 176
Query: 252 GQKVNLEVDILGKYVERLLSSGFVDSFKAS 281
G VN+EVD +GKY E+L+ + D K +
Sbjct: 177 GDLVNVEVDQIGKYTEKLVEAHIADWIKKT 206
>pdb|1I8D|A Chain A, Crystal Structure Of Riboflavin Synthase
pdb|1I8D|B Chain B, Crystal Structure Of Riboflavin Synthase
pdb|1I8D|C Chain C, Crystal Structure Of Riboflavin Synthase
Length = 213
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 104 VLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQ 163
+L+G+ G S+A NG CLTVTE F L ETLR T+L +L+ G VN+ERA +
Sbjct: 32 MLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAK 89
Query: 164 PTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLT 221
+ +GGH + GH+ T + + E++ +W KV+ D L+KYI+ KGFI IDG SLT
Sbjct: 90 FSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLT 148
Query: 222 VVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVD----ILGKYVERLLSS 272
V +V C + L+ T ++ + KK+G +VN+E+D + VER+L++
Sbjct: 149 VGEVTPTRFCVH--LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAA 201
>pdb|3A35|A Chain A, Crystal Structure Of Lump Complexed With Riboflavin
pdb|3A35|B Chain B, Crystal Structure Of Lump Complexed With Riboflavin
pdb|3A3B|B Chain B, Crystal Structure Of Lump Complexed With Flavin
Mononucleotide
pdb|3A3B|A Chain A, Crystal Structure Of Lump Complexed With Flavin
Mononucleotide
pdb|3A3G|A Chain A, Crystal Structure Of Lump Complexed With
6,7-Dimethyl-8-(1'- D-Ribityl) Lumazine
pdb|3A3G|B Chain B, Crystal Structure Of Lump Complexed With
6,7-Dimethyl-8-(1'- D-Ribityl) Lumazine
Length = 190
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F GIV+ G I+++ ++D K +LE V G + VNG LTV +
Sbjct: 1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVY 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
F + + + T+ ELE G+ VNLE + S +G + G++ G + ++ EED
Sbjct: 61 FDI---DQAINTTTFRELEVGNKVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDR 117
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNF 234
L + +K K L++ I+ + I I+G S ++ ++ D+ N+
Sbjct: 118 LKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINY 159
>pdb|1HZE|A Chain A, Solution Structure Of The N-Terminal Domain Of Riboflavin
Synthase From E. Coli
pdb|1HZE|B Chain B, Solution Structure Of The N-Terminal Domain Of Riboflavin
Synthase From E. Coli
pdb|1I18|A Chain A, Solution Structure Of The N-Terminal Domain Of Riboflavin
Synthase From E. Coli
pdb|1I18|B Chain B, Solution Structure Of The N-Terminal Domain Of Riboflavin
Synthase From E. Coli
pdb|1PKV|A Chain A, The N-Terminal Domain Of Riboflavin Synthase In Complex
With Riboflavin
pdb|1PKV|B Chain B, The N-Terminal Domain Of Riboflavin Synthase In Complex
With Riboflavin
Length = 97
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 104 VLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQ 163
+L+G+ G S+A NG CLTVTE F L ETLR T+L +L+ G VN+ERA +
Sbjct: 32 MLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAK 89
Query: 164 PTSRMGGH 171
+ +GGH
Sbjct: 90 FSDEIGGH 97
>pdb|3DDY|A Chain A, Structure Of Lumazine Protein, An Optical Transponder Of
Luminescent Bacteria
Length = 186
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F GIV+ G I + S D + + + V + + VNG TV +
Sbjct: 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVY 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
F + + L T+ L+ G VNLE + +G + G++ GT ++ ++E +
Sbjct: 61 FDI---DQALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAG 117
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
+ + K L + + K I IDG SL + D+ D N+ + K V
Sbjct: 118 FSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV- 176
Query: 253 QKVNLEV 259
KVN+E+
Sbjct: 177 -KVNVEI 182
>pdb|2X8K|A Chain A, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages.
pdb|2X8K|B Chain B, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages.
pdb|2X8K|C Chain C, Crystal Structure Of Spp1 Dit (Gp 19.1) Protein, A
Paradigm Of Hub Adsorption Apparatus In Gram-Positive
Infecting Phages
Length = 252
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 43 FKPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK 102
+ P + +TT P +G N IRC+F+ E E++ L DG V+K
Sbjct: 136 YGPEVTTDVTTASTPVKNTGLAVTNPTIRCVFSTSATEY-EMQLL----DGSTVVKFLK- 189
Query: 103 TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAV 162
V+ G + GD++ ++ +VT G + P L ++ I+L+P L +A
Sbjct: 190 -VVYGFNTGDTLVIDCHERSVTLNGQD-------IMPALLIQSDWIQLKPQVNTYL-KAT 240
Query: 163 QPTS 166
QP++
Sbjct: 241 QPST 244
>pdb|2C9J|A Chain A, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|B Chain B, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|C Chain C, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|D Chain D, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|E Chain E, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|F Chain F, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|G Chain G, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|H Chain H, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
Length = 223
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 20/143 (13%)
Query: 88 GASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSL 147
G N G F +K + + D I + T++ + D+ G PE +
Sbjct: 31 GDPNSGQFSLKTKLRGGKPLPFSYDIITMGFXFRAFTKYPEGIADYFKGSFPEAFQWNRR 90
Query: 148 IELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGV------------IVSMEPEEDSLWI 195
IE E G ++N+ + ++ + G V GV IV EP E++L
Sbjct: 91 IEFEDGGVINMSSDITYKDKV----LHGDVWALGVNFPPNGPVMKNEIVMEEPAEETLTA 146
Query: 196 KVKTDKSLLKYIVPKGFIAIDGT 218
K +L PK ++ DG+
Sbjct: 147 K----NGVLVGFCPKAYLLKDGS 165
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 79 EEMGEIEQLGASNDGGFVMKIRAKTVLEGVH--LGDSIAVNGTCLTVTEFGTQL 130
EE+ E Q G DG V++ T L+ + + D +A+NG CLT + ++L
Sbjct: 119 EELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLTQSPTSSRL 172
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 35 YNPNYSFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 86
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 87 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 145
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 146 DLKSFLRETRP 156
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 9 YNPNYSFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 60
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 61 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 119
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 120 DLKSFLRETRP 130
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 15 YNPNYSFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 66
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 67 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 125
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 126 DLKSFLRETRP 136
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 9 YNPNYSFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 60
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 61 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 119
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 120 DLKSFLRETRP 130
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 25 YNPNYCFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 76
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 77 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 135
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 136 DLKSFLRETRP 146
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 31 IPSKSYLKF---NPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGE 83
IP+ L F NP + K SS+S L +P+ +IR L G E+ E
Sbjct: 12 IPTTENLYFQGSNPNYCFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYE 63
Query: 84 IEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLR 143
+ G ND +++ KT+ E D + L +++F Q +G+S ++L
Sbjct: 64 GQVSGMPNDPS-PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 122
Query: 144 KTSLIELEP-GSLVNLERAVQP 164
+ L+EL G L + R +P
Sbjct: 123 RFILMELMAGGDLKSFLRETRP 144
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 26 YNPNYCFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 77
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 78 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 136
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 137 DLKSFLRETRP 147
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 FNPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGG 94
+NP + K SS+S L +P+ +IR L G E+ E + G ND
Sbjct: 49 YNPNYCFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYEGQVSGMPNDPS 100
Query: 95 FVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP-G 153
+++ KT+ E D + L +++F Q +G+S ++L + L+EL G
Sbjct: 101 -PLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG 159
Query: 154 SLVNLERAVQP 164
L + R +P
Sbjct: 160 DLKSFLRETRP 170
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 31 IPSKSYLKF---NPYF----KPSSLSHLTTIPKPKFKSGTQFHNRMIRCLFTGIVEEMGE 83
IP+ L F NP + K SS+S L +P+ +IR L G E+ E
Sbjct: 12 IPTTENLYFQGSNPNYCFAGKTSSISDLKEVPRKNIT--------LIRGLGHGAFGEVYE 63
Query: 84 IEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLR 143
+ G ND +++ KT+ E D + L +++F Q +G+S ++L
Sbjct: 64 GQVSGMPNDPS-PLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 122
Query: 144 KTSLIELEP-GSLVNLERAVQP 164
+ L+EL G L + R +P
Sbjct: 123 RFILLELMAGGDLKSFLRETRP 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,564,108
Number of Sequences: 62578
Number of extensions: 365039
Number of successful extensions: 723
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 23
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)