BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023449
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y7P0|RISA_SCHPO Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rib5 PE=1 SV=1
Length = 208
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 143/210 (68%), Gaps = 5/210 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTG+VE +G ++ + + D GF MKI A +L+ H GDSIAVNGTCLTVT+F
Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDF--DRYH 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
FTVG++PE+LR T+L + + G VNLERAV ++RMGGHFVQGHVD IV + + ++
Sbjct: 59 FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 118
Query: 193 LWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
+ + D +LKYIV KG+IA+DGTSLT+ V ++ F+ M+++YTQ KV++ K V
Sbjct: 119 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV--DDSTFSIMMISYTQSKVIMAKKNV 176
Query: 252 GQKVNLEVDILGKYVERLLSSGFVDSFKAS 281
G VN+EVD +GKY E+L+ + D K +
Sbjct: 177 GDLVNVEVDQIGKYTEKLVEAHIADWIKKT 206
>sp|A5DB51|RISA_PICGU Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260
/ CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL
Y-324) GN=RIB5 PE=2 SV=3
Length = 239
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 132/203 (65%), Gaps = 7/203 (3%)
Query: 73 LFTGIVEEMGEIEQLG-----ASNDGGFVMKI-RAKTVLEGVHLGDSIAVNGTCLTVTEF 126
+FTG+VE +G + Q+ AS G M I +LE V LGDSI NG CLTVTEF
Sbjct: 1 MFTGLVEHIGTVLQVTEKDTTASGGDGVSMVIGDCSKILEDVQLGDSICTNGVCLTVTEF 60
Query: 127 GTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSM 186
F VG+SPETLR++ L EL+PGS VNLERAV+ RMGGH VQGHVD IV+
Sbjct: 61 DMARSQFKVGISPETLRRSDLGELKPGSKVNLERAVKADVRMGGHVVQGHVDTIATIVNR 120
Query: 187 EPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVV 245
+ +++ K D KYIV KGFIAIDGTSLTV DV E+ F+ +V+YTQ+KV+
Sbjct: 121 RGDGNAINFTFKLRDSQYGKYIVEKGFIAIDGTSLTVTDVDHEQSEFSISMVSYTQEKVI 180
Query: 246 IPLKKVGQKVNLEVDILGKYVER 268
+PLK G VN+EVD+ GK +E+
Sbjct: 181 MPLKNSGDSVNIEVDLTGKLIEK 203
>sp|P50854|RISA_ACTPL Riboflavin synthase OS=Actinobacillus pleuropneumoniae GN=ribE PE=3
SV=1
Length = 215
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 137/211 (64%), Gaps = 7/211 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGF-VMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLE 131
+FTGI+EE+G+I Q+ G F V+ I A VL+ VHLGD+IAVNG CLTVT F +
Sbjct: 1 MFTGIIEEVGKIAQI--HKQGEFAVVTINATKVLQDVHLGDTIAVNGVCLTVTSFSSN-- 56
Query: 132 DFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEED 191
FT + ETL++TSL EL+ S VNLERA+ R GGH V GH+DGTG I + P +
Sbjct: 57 QFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFGGHIVSGHIDGTGEIAEITPAHN 116
Query: 192 SLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
S W ++KT L++YI+ KG I IDG SLTVVD ++E F ++ +T ++ + KK+
Sbjct: 117 STWYRIKTSPKLMRYIIEKGSITIDGISLTVVDT--DDESFRVSIIPHTIKETNLGSKKI 174
Query: 252 GQKVNLEVDILGKYVERLLSSGFVDSFKASL 282
G VNLE DI+GKY+E+ L D K++L
Sbjct: 175 GSIVNLENDIVGKYIEQFLLKKPADEPKSNL 205
>sp|P38145|RISA_YEAST Riboflavin synthase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RIB5 PE=1 SV=1
Length = 238
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 132/207 (63%), Gaps = 11/207 (5%)
Query: 73 LFTGIVEEMGEIEQLGASND---GGFVMKI---RAKTVLEGVHLGDSIAVNGTCLTVTEF 126
+FTGIVE MG + + +D GG + I A ++L H+GDSIAVNG CLTVTEF
Sbjct: 1 MFTGIVECMGTVLENNPYDDSESGGQGVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEF 60
Query: 127 GTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSM 186
+ F VG+SPET++++++ G+ VNLERAV R GGH+VQGHVD IVS
Sbjct: 61 NN--DSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFGGHYVQGHVDTVANIVSR 118
Query: 187 EPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTV--VDVFDEEECFNFMLVAYTQQK 243
PE +S+ + D+ KYIV KGFI IDGTSLT+ VD + F ++ +TQ
Sbjct: 119 RPEGNSIIFGFQLRDQEYFKYIVEKGFICIDGTSLTIIKVDPLSQGGAFYISMIKHTQDN 178
Query: 244 VVIPLKKVGQKVNLEVDILGKYVERLL 270
V++PLKK+G +VN+EVD+ GK +E+ +
Sbjct: 179 VIMPLKKIGDEVNIEVDLTGKIIEKQI 205
>sp|P16440|RISA_BACSU Riboflavin synthase OS=Bacillus subtilis (strain 168) GN=ribE PE=1
SV=2
Length = 215
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 5/198 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGI+EE G IE + + + I+ +LE VHLGDSIAVNG CLTVT+F
Sbjct: 1 MFTGIIEETGTIESMKKAGHA-MALTIKCSKILEDVHLGDSIAVNGICLTVTDFTKN--Q 57
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
FTV + PET++ TSL +L GS VNLERA+ R GGHFV GHVDGT I +E + ++
Sbjct: 58 FTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNA 117
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
++ +K D SL K +V KG I +DG SLT+ + E+ L+ +T + + K +G
Sbjct: 118 VYYDLKMDPSLTKTLVLKGSITVDGVSLTIFGL--TEDTVTISLIPHTISETIFSEKTIG 175
Query: 253 QKVNLEVDILGKYVERLL 270
KVN+E D++GKY+ R L
Sbjct: 176 SKVNIECDMIGKYMYRFL 193
>sp|P65327|RISA_MYCTU Riboflavin synthase OS=Mycobacterium tuberculosis GN=ribE PE=3 SV=1
Length = 201
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGIVEE GE+ A D + IR V GDSIAVNG CLTV + L D
Sbjct: 1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPD 56
Query: 133 --FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEE 190
FT + ETL +++L EL PGS VNLERA SR+GGH VQGHVD TG IV+ P E
Sbjct: 57 GQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSE 116
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEE-ECFNFMLVAYTQQKVVIPLK 249
++++ S+ +Y+V KG I +DG SLTV + E+ + F L+ T++ +
Sbjct: 117 HWEVVRIEMPASVARYVVEKGSITVDGISLTVSGLGAEQRDWFEVSLIPTTRELTTLGSA 176
Query: 250 KVGQKVNLEVDILGKYVERLLSS 272
VG +VNLEVD++ KYVERL+ S
Sbjct: 177 AVGTRVNLEVDVVAKYVERLMRS 199
>sp|P65328|RISA_MYCBO Riboflavin synthase OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=ribE PE=3 SV=1
Length = 201
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGIVEE GE+ A D + IR V GDSIAVNG CLTV + L D
Sbjct: 1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPD 56
Query: 133 --FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEE 190
FT + ETL +++L EL PGS VNLERA SR+GGH VQGHVD TG IV+ P E
Sbjct: 57 GQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSE 116
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEE-ECFNFMLVAYTQQKVVIPLK 249
++++ S+ +Y+V KG I +DG SLTV + E+ + F L+ T++ +
Sbjct: 117 HWEVVRIEMPASVARYVVEKGSITVDGISLTVSGLGAEQRDWFEVSLIPTTRELTTLGSA 176
Query: 250 KVGQKVNLEVDILGKYVERLLSS 272
VG +VNLEVD++ KYVERL+ S
Sbjct: 177 AVGTRVNLEVDVVAKYVERLMRS 199
>sp|Q44680|RISA_BACAM Riboflavin synthase OS=Bacillus amyloliquefaciens GN=ribE PE=3 SV=1
Length = 215
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 115/198 (58%), Gaps = 5/198 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGIVEE G I+ + + + I A V V LGDSIAVNG CLTVT F
Sbjct: 1 MFTGIVEETGTIQAIKKTGLS-MALTIAASKVTSDVRLGDSIAVNGICLTVTGFSDN--Q 57
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
FTV + PET++ TSL L GS VNLERA+ R GGHFV GHVDGT I +E + ++
Sbjct: 58 FTVDVMPETVKATSLNGLSKGSKVNLERAMSANGRFGGHFVSGHVDGTAEITRIEKKSNA 117
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
++ +K L K +V KG I +DG S T+ + DE ++ +T + + K VG
Sbjct: 118 VYYDLKLSPELTKTLVLKGSITVDGVSSTIFGLSDES--VTVSVIPHTISETIFRTKAVG 175
Query: 253 QKVNLEVDILGKYVERLL 270
VN+E D++GKY+ R L
Sbjct: 176 SIVNIECDMIGKYLYRFL 193
>sp|O67604|RISA_AQUAE Riboflavin synthase OS=Aquifex aeolicus (strain VF5) GN=ribE PE=3
SV=1
Length = 207
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTG+VE++G+++ L S+ G K+ +T LE V LGDS++VNG CLTV + +
Sbjct: 1 MFTGLVEDLGKVKNLTLSSKGA---KLSVETKLEDVKLGDSVSVNGACLTVVDIKSSTLT 57
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSME--PEE 190
F V SPETL++T+L +L+ G VNLERA++ R+GGH VQGHVD T + S E
Sbjct: 58 FDV--SPETLKRTNLGKLKTGDYVNLERALRVGERLGGHIVQGHVDFTAPVKSFNFLGEH 115
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKK 250
L I++ + S+ Y+V KG IA+DG SLT V+ E + F ++ +T + + KK
Sbjct: 116 YELVIEIPEEWSI--YVVEKGSIALDGISLT-VNYVKENKVF-INIIPHTYKSTNLQFKK 171
Query: 251 VGQKVNLEVDILGKYVERLLS 271
VG +N+E DILGKYV L+
Sbjct: 172 VGDLLNVETDILGKYVINYLN 192
>sp|P51961|RISA_PHOPO Riboflavin synthase OS=Photobacterium phosphoreum GN=ribE PE=3 SV=1
Length = 218
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVNGTCLTVTEFGTQLE 131
+FTGI+E +G I + S F + + T+ L V +GDSIA NG CLTV +
Sbjct: 1 MFTGIIEAVGNISAI-TSKGSDFEVSVNCDTLDLADVKIGDSIATNGICLTVVKLTAN-- 57
Query: 132 DFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEED 191
+ LS ETL +T+ + G VNLE+A+ PT+R GGH V GHVD ++
Sbjct: 58 SYVADLSIETLSRTAFNYYKVGQAVNLEKAMLPTTRFGGHIVSGHVDAVAEVIECRTSGR 117
Query: 192 SLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
++ I ++ + KY+ KG + +DG SLTV V E F +V +T + I KV
Sbjct: 118 AIDIWIRVPSQIEKYLSEKGSVTVDGVSLTVNAVTGNE--FKLTIVPHTVVETTIADFKV 175
Query: 252 GQKVNLEVDILGKYVERLL 270
G KVN+EVD+L +Y+ERLL
Sbjct: 176 GNKVNIEVDVLARYIERLL 194
>sp|Q01993|RISA_PHOLE Riboflavin synthase OS=Photobacterium leiognathi GN=ribE PE=3 SV=1
Length = 218
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 4/209 (1%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGI+E +G I + N+ ++ + V++GDSIA NG CLTV++
Sbjct: 1 MFTGIIESIGNIGAIIRHNEDLSIVVNTNNLDISDVNIGDSIATNGVCLTVSKLLPS--G 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
+T LS ET ++T+ G VNLE+A+ PT+R+GGH V GHVDG G ++ + +
Sbjct: 59 YTADLSLETYKRTAFHSYRIGQEVNLEKAMLPTTRLGGHLVSGHVDGVGEVIEFKRNGRA 118
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
+ I V L KY+ KG + IDG SLT+ V+ + +V +T + + +
Sbjct: 119 INIWVAVPVQLKKYLSEKGSVTIDGISLTINAVY--QNVIKLTIVPHTLAETNLVNINID 176
Query: 253 QKVNLEVDILGKYVERLLSSGFVDSFKAS 281
+KVN+E+D++ +Y+E+L+ +S K S
Sbjct: 177 KKVNVEIDMMARYLEKLIKVDRYESEKTS 205
>sp|Q8KA22|RISA_BUCAP Riboflavin synthase OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=ribE PE=3 SV=1
Length = 208
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGIV + + + + + +L+ + +GDS+A NG CLTV
Sbjct: 1 MFTGIVNGIARVVSINKKKNFHTYTVNFSSILLKNLKIGDSVAHNGCCLTVKYINCPHVV 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVI--VSMEPEE 190
F + T+ T+L L G VN+ER+++ MGGH + GH+ TG I +S +
Sbjct: 61 FDI--MKITIANTNLGVLNIGDYVNIERSLKYGDEMGGHIISGHIMNTGEISKISKLDKN 118
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKK 250
LW KVK D SL+KYI KGFIAIDG SLT+ ++ E C + ++ T I KK
Sbjct: 119 YILWCKVK-DLSLMKYIFYKGFIAIDGISLTINNIIKNEFCVS--IIPETLSSTTIGFKK 175
Query: 251 VGQKVNLEVD 260
+GQ VN+E+D
Sbjct: 176 IGQLVNIEID 185
>sp|P0AFU9|RISA_SHIFL Riboflavin synthase OS=Shigella flexneri GN=ribE PE=3 SV=1
Length = 213
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 104 VLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQ 163
+L+G+ G S+A NG CLTVTE F L ETLR T+L +L+ G VN+ERA +
Sbjct: 32 MLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAK 89
Query: 164 PTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLT 221
+ +GGH + GH+ T + + E++ +W KV+ D L+KYI+ KGFI IDG SLT
Sbjct: 90 FSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLT 148
Query: 222 VVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVD----ILGKYVERLLSS 272
V +V C + L+ T ++ + KK+G +VN+E+D + VER+L++
Sbjct: 149 VGEVTPTRFCVH--LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAA 201
>sp|P0AFU8|RISA_ECOLI Riboflavin synthase OS=Escherichia coli (strain K12) GN=ribC PE=1
SV=1
Length = 213
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 104 VLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQ 163
+L+G+ G S+A NG CLTVTE F L ETLR T+L +L+ G VN+ERA +
Sbjct: 32 MLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAK 89
Query: 164 PTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLT 221
+ +GGH + GH+ T + + E++ +W KV+ D L+KYI+ KGFI IDG SLT
Sbjct: 90 FSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLT 148
Query: 222 VVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVD----ILGKYVERLLSS 272
V +V C + L+ T ++ + KK+G +VN+E+D + VER+L++
Sbjct: 149 VGEVTPTRFCVH--LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAA 201
>sp|Q9PJZ1|RISA_CHLMU Riboflavin synthase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=ribE PE=3 SV=1
Length = 198
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 115/192 (59%), Gaps = 10/192 (5%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F+GI++E+ ++ + D + I A+ +++GV G SIAV+G CLT+ + +L
Sbjct: 1 MFSGIIQEVARVDLIHHYGDS-MEIGIFARNLVDGVP-GSSIAVDGICLTLVKREFELLF 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
F V + ET+ T++ GS+VNLER+V+ +GGHFV GHV G G I+++E
Sbjct: 59 FDV--TEETMACTTIKNYTVGSMVNLERSVRLGDEIGGHFVSGHVCGVGTIIAVEKS--- 113
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
++ K +L+ Y++ KGFIAIDG SLT+ V + F+ ++ T+ + + K+VG
Sbjct: 114 -YMFFKAPTNLVPYVLEKGFIAIDGISLTIAQV--RGDIFSVSVIPETRARTSLGYKQVG 170
Query: 253 QKVNLEVDILGK 264
VN+E D++ K
Sbjct: 171 SHVNMEPDMMTK 182
>sp|P45273|RISA_HAEIN Riboflavin synthase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=ribE PE=3 SV=1
Length = 204
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 9/191 (4%)
Query: 73 LFTGIVEEMGEIEQLG-ASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLE 131
+FTGIV+ I + +N V+K+ + + + + +G SIA NG CLTVTE L
Sbjct: 1 MFTGIVQGTAPIHSIKEKANFRTQVVKLLPE-MRKDLEIGASIANNGVCLTVTEINGDLV 59
Query: 132 DFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEED 191
F L ETL+ T+L ++ G VN+ERA+Q + +GGH + GH+ T I + E+
Sbjct: 60 SFD--LMQETLKITNLGTVKVGDYVNIERAMQMGTEIGGHLLSGHIYCTAKISDIIASEN 117
Query: 192 S--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLK 249
+ +W ++ + ++KYI+ KGF+A+DG SLT+ +V D + C N L+ T Q+ ++ +
Sbjct: 118 NRQIWFELPS-ADVMKYILTKGFVAVDGISLTIGEVRDTQFCVN--LIPETLQRTLMGRR 174
Query: 250 KVGQKVNLEVD 260
KVG VN+E+D
Sbjct: 175 KVGDIVNIEID 185
>sp|P57212|RISA_BUCAI Riboflavin synthase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=ribE PE=3 SV=1
Length = 208
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 11/175 (6%)
Query: 106 EGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPT 165
+ + LGDSI+ NG CLTV + ETL+ T+L L G +N+ER+++
Sbjct: 34 KNLKLGDSISHNGCCLTVKLINNSF--IICDVIQETLKSTNLGILNIGDSINIERSIKYG 91
Query: 166 SRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVV 223
+GGH + GHV T I M +++ +W+K+ + SL+KYI KGFI +DG SLTV
Sbjct: 92 DEIGGHIISGHVMNTAEISKMSKSDNNCVIWLKM-NNMSLMKYIFYKGFICVDGISLTVN 150
Query: 224 DVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYV----ERLLSSGF 274
D+ E C N ++ YT I KK G VN+E+D + + ERL+++
Sbjct: 151 DIIKNEFCVN--IIPYTFLFTTIKDKKNGSLVNIEIDFYTQTIVDTTERLINNNL 203
>sp|O84410|RISA_CHLTR Riboflavin synthase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=ribE PE=3 SV=1
Length = 199
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 115/192 (59%), Gaps = 10/192 (5%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F+GI++E+ ++ + D + + A+ +++ V G S +V+G CLT+ + +L
Sbjct: 1 MFSGIIQEVARVDLIHHLRDS-MEIGVFARKLIDVVP-GSSFSVDGICLTLVKRQYELLF 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
F V + ET+ T++ + G++VNLER+V+ +GGHFV GHV G G I+++E
Sbjct: 59 FDV--TEETMAWTTIKDYTVGTMVNLERSVRLGDEIGGHFVSGHVCGIGTIIAIEKS--- 113
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
++ K +L+ YI+ KGFIAIDG SLT+ V + + F+ L+ T+ + + K+VG
Sbjct: 114 -YMFFKAPANLVPYILEKGFIAIDGISLTIARV--KGDIFSVSLIPETRARTSLGYKQVG 170
Query: 253 QKVNLEVDILGK 264
VN+E D++ K
Sbjct: 171 AHVNMEPDMMTK 182
>sp|Q9Z820|RISA_CHLPN Riboflavin synthase OS=Chlamydia pneumoniae GN=ribE PE=3 SV=1
Length = 200
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 118/205 (57%), Gaps = 14/205 (6%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVNGTCLTVTEFGTQLE 131
+F+GI++E+GE+ A +G + I++ + + + GDS+AV+G CLT+T
Sbjct: 1 MFSGIIQELGEVCFFEAQGNG-LSLGIKSTPLFVTPLVTGDSVAVDGVCLTLTSCNESKI 59
Query: 132 DFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEED 191
F V PETL T+L E VNLE A++ +GGH + GHV GT I + +E+
Sbjct: 60 FFDV--IPETLACTTLGEKRCSDQVNLEAALKMGDSIGGHLLSGHVFGTAEIFLI--KEN 115
Query: 192 SLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251
+ + K L +Y+ KGFIAIDG SLT+V V + + F+ L+ T Q+ + K+
Sbjct: 116 RYYF--RGSKELSQYLFEKGFIAIDGISLTLVSV--DSDTFSVGLIPETLQRTTLGKKRE 171
Query: 252 GQKVNLEVDILGKY----VERLLSS 272
G++VN+E+D+ K V+R+L+S
Sbjct: 172 GERVNIEIDMSTKIQVDTVKRILAS 196
>sp|Q89AX1|RISA_BUCBP Riboflavin synthase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=ribE PE=3 SV=1
Length = 212
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 11/204 (5%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+FTGIV +G++ ++ + +++ + LG SI+ NG CLTV +
Sbjct: 1 MFTGIVRGLGKVVKILKEKKISQWEVETSNELVKNLMLGASISCNGCCLTVRNIFRTI-- 58
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEP--EE 190
F V + ETLR TSL + G +NLER+++ +GGH V GH+ TGV+ +
Sbjct: 59 FCVDIVEETLRSTSLNTIIVGQYINLERSIKFGEEVGGHLVSGHIITTGVVSDKKELFSN 118
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKK 250
LWI + +KY KGF+ +DG SLT+ + + F L+ T + I K
Sbjct: 119 QELWISLSAS-FFIKYFFYKGFVCVDGISLTIGSI--KNNAFCVFLIPETILRTTIGQKI 175
Query: 251 VGQKVNLEVDILGKY----VERLL 270
+G VN+E+D + VERLL
Sbjct: 176 IGDVVNIEIDFYTQITVDSVERLL 199
>sp|P21578|LUXY_VIBFI Yellow fluorescent protein OS=Vibrio fischeri GN=luxY PE=1 SV=1
Length = 194
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 7/189 (3%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F GIVE +G IE++ D + +L G+ SI NG LTVT + +
Sbjct: 1 MFKGIVEGIGIIEKIDIYTDLDKYAIRFPENMLNGIKKESSIMFNGCFLTVTSVNSNIVW 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEED- 191
F + E + + E + G VNL + + GGH + + I+ + ED
Sbjct: 61 FDI-FEKEARKLDTFREYKVGDRVNLGTFPKFGAASGGHILSARISCVASIIEIIENEDY 119
Query: 192 -SLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKK 250
+WI++ ++ ++++ K +IA+DG SLT+ + + + F L Q + +K
Sbjct: 120 QQMWIQIP--ENFTEFLIDKDYIAVDGISLTIDTIKNNQ--FFISLPLKIAQNTNMKWRK 175
Query: 251 VGQKVNLEV 259
G KVN+E+
Sbjct: 176 KGDKVNVEL 184
>sp|P25082|LUXP_PHOPO Lumazine protein OS=Photobacterium phosphoreum GN=luxL PE=1 SV=1
Length = 189
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F GIV+ +G I+++ ++D K +L+ V + VNG +TV +
Sbjct: 1 MFKGIVQGVGIIKKISKNDDTQRHGITFPKDILDSVEKDTVMLVNGCSVTVVRITGDVVY 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQP--TSRMGGHFVQGHVDGTGVIVSMEPEE 190
F + + + T+ +LE G+ VNLE V+P S +G + G++ G + ++ EE
Sbjct: 61 FDI---DQAINTTTFRKLEVGNKVNLE--VRPGFGSLLGKGALTGNIKGVATVDNITEEE 115
Query: 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNF 234
D L + +K K L++ I + I I+G S ++ +V ++ C N+
Sbjct: 116 DLLKVYIKIPKDLIENISSEDHIGINGVSNSIEEVSNDIICINY 159
>sp|Q06877|LUXP_PHOLE Lumazine protein OS=Photobacterium leiognathi GN=lumP PE=1 SV=1
Length = 186
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 5/187 (2%)
Query: 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED 132
+F GIV+ G I + S D + + + V + + VNG LTV +
Sbjct: 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSLTVVRILGDMVY 60
Query: 133 FTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192
F + + L T+ L+ G VNLE + +G + G++ GT ++ ++E +
Sbjct: 61 FDI---DQALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAG 117
Query: 193 LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVG 252
+ + K L + + K I IDG SL + D+ D N+ + K V
Sbjct: 118 FSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV- 176
Query: 253 QKVNLEV 259
KVN+E+
Sbjct: 177 -KVNVEI 182
>sp|P37893|AMPN_CAUCR Aminopeptidase N OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=pepN PE=3 SV=2
Length = 863
Score = 34.3 bits (77), Expect = 0.99, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 113 SIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHF 172
SIA++G L E+G E T+ +P+ T+ +E++P S +A+ GG F
Sbjct: 64 SIAIDGRPLAAGEYGVDAERLTIAEAPDAFVLTTEVEIDPSS----NKALMGLYMSGGRF 119
Query: 173 -VQGHVDGTGVIVSMEPEEDSL 193
Q +G I D L
Sbjct: 120 CTQCEAEGFRTITYFPDRPDVL 141
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 160 RAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAI 215
R P+S GG++ HV G + + P + W+K+ +K +VP GF A+
Sbjct: 123 RPTAPSSEKGGNYPVQHVGGNYTHIPLSPRTLNAWVKLVEEKKFGAEVVP-GFQAL 177
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 157 NLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAI 215
N+ R P S GG+F + G V + + P + W+K+ +K +VP GF A+
Sbjct: 120 NISRPTAPPSGKGGNFPVQQIGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVP-GFQAL 177
>sp|P04590|GAG_HV2RO Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ROD) GN=gag PE=1 SV=3
Length = 522
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 160 RAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAI 215
R P+S GG++ HV G + + P + W+K+ +K +VP GF A+
Sbjct: 123 RPTAPSSEKGGNYPVQHVGGNYTHIPLSPRTLNAWVKLVEEKKFGAEVVP-GFQAL 177
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 157 NLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAI 215
N+ R P S GG+F G + V + P + W+K+ +K +VP GF A+
Sbjct: 120 NISRPTAPPSGKGGNFPVQQAGGNYIHVPLSPRTLNAWVKLVEEKKFGAEVVP-GFQAL 177
>sp|Q6CFI3|DDI1_YARLI DNA damage-inducible protein 1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DDI1 PE=3 SV=1
Length = 397
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 224 DVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDIL 262
D F +E+ N M + Y+++KVV+ LK+ V L +L
Sbjct: 356 DAFKDEDIVNLMSLGYSREKVVVALKQTDGDVELAASLL 394
>sp|P17756|GAG_HV2D1 Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag PE=3 SV=4
Length = 521
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 155 LVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIA 214
+ N+ R P S GG+F G + V + P + W+K+ +K +VP GF A
Sbjct: 118 MPNISRPTAPPSGKGGNFPVQQAGGNYIHVPLSPRTLNAWVKLVEEKKFGAEVVP-GFQA 176
Query: 215 I 215
+
Sbjct: 177 L 177
>sp|P12450|GAG_HV2SB Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag PE=3 SV=3
Length = 520
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 155 LVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIA 214
+ N+ R P S GG+F + G V + + P + W+K+ +K +VP GF A
Sbjct: 118 MPNISRPTAPPSGKGGNFPVQQIGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVP-GFQA 176
Query: 215 I 215
+
Sbjct: 177 L 177
>sp|B4EE24|QUEA_BURCJ S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=queA PE=3 SV=1
Length = 355
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 130 LEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQ 174
L DF L PE + +T+L + L+ ++R+V+P + HF +
Sbjct: 4 LSDFDFNLPPELIAQTALPDRTASRLLEVDRSVEPARLVDRHFAE 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,614,316
Number of Sequences: 539616
Number of extensions: 4649578
Number of successful extensions: 10190
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10064
Number of HSP's gapped (non-prelim): 39
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)