Query 023449
Match_columns 282
No_of_seqs 213 out of 1689
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00187 ribE riboflavin synt 100.0 8.4E-77 1.8E-81 529.6 22.3 195 73-272 1-197 (200)
2 PLN02741 riboflavin synthase 100.0 8.7E-77 1.9E-81 527.3 21.3 193 73-268 1-194 (194)
3 COG0307 RibC Riboflavin syntha 100.0 4.2E-75 9.2E-80 517.1 20.5 194 73-274 1-196 (204)
4 PRK13020 riboflavin synthase s 100.0 4E-73 8.6E-78 507.9 21.7 197 73-274 1-202 (206)
5 PRK09289 riboflavin synthase s 100.0 9.1E-72 2E-76 494.9 22.8 192 73-269 1-192 (194)
6 KOG3310 Riboflavin synthase al 100.0 9.8E-64 2.1E-68 433.0 13.8 198 73-272 1-199 (210)
7 PRK09289 riboflavin synthase s 100.0 8.4E-32 1.8E-36 239.3 11.5 99 61-162 85-184 (194)
8 PRK13020 riboflavin synthase s 100.0 1.5E-30 3.3E-35 233.3 11.0 99 61-162 86-185 (206)
9 PLN02741 riboflavin synthase 100.0 3.2E-30 7E-35 229.4 10.6 99 61-162 86-187 (194)
10 TIGR00187 ribE riboflavin synt 100.0 8.3E-30 1.8E-34 227.7 10.8 99 61-162 86-186 (200)
11 COG0307 RibC Riboflavin syntha 100.0 6.3E-29 1.4E-33 221.7 9.1 99 61-162 83-183 (204)
12 PF00677 Lum_binding: Lumazine 99.9 4.5E-28 9.7E-33 189.5 8.8 84 75-161 1-85 (85)
13 PF00677 Lum_binding: Lumazine 99.9 1.7E-27 3.6E-32 186.3 9.3 85 174-260 1-85 (85)
14 KOG3310 Riboflavin synthase al 99.8 1.3E-18 2.9E-23 151.9 7.4 100 62-162 87-188 (210)
15 PF00970 FAD_binding_6: Oxidor 86.5 6.2 0.00013 30.2 8.3 76 181-258 2-91 (99)
16 PF00970 FAD_binding_6: Oxidor 77.4 9.5 0.00021 29.1 6.3 80 82-161 2-93 (99)
17 PRK05802 hypothetical protein; 75.0 14 0.0003 35.4 7.9 79 180-258 66-154 (320)
18 PF13437 HlyD_3: HlyD family s 73.5 18 0.00038 28.0 6.9 80 109-202 16-96 (105)
19 PRK08221 anaerobic sulfite red 72.5 11 0.00024 34.5 6.4 76 81-161 9-89 (263)
20 PRK06222 ferredoxin-NADP(+) re 66.4 24 0.00051 32.8 7.2 80 82-161 2-88 (281)
21 PRK05802 hypothetical protein; 65.5 28 0.00061 33.2 7.8 82 81-162 66-157 (320)
22 COG1566 EmrA Multidrug resista 65.3 11 0.00023 37.2 4.9 63 108-181 224-286 (352)
23 PF07703 A2M_N_2: Alpha-2-macr 61.0 22 0.00048 28.6 5.4 98 148-261 8-118 (136)
24 PRK05713 hypothetical protein; 60.5 33 0.00071 32.2 7.1 80 81-161 93-179 (312)
25 PF08922 DUF1905: Domain of un 59.0 12 0.00027 28.8 3.3 65 188-259 7-80 (80)
26 PF12700 HlyD_2: HlyD family s 57.3 44 0.00095 30.5 7.3 139 106-256 173-327 (328)
27 PRK00054 dihydroorotate dehydr 55.0 64 0.0014 29.1 7.8 78 81-161 6-91 (250)
28 cd06210 MMO_FAD_NAD_binding Me 54.1 53 0.0012 28.9 7.0 81 81-161 3-97 (236)
29 cd06196 FNR_like_1 Ferredoxin 53.8 46 0.00099 28.9 6.5 79 81-161 2-92 (218)
30 TIGR02911 sulfite_red_B sulfit 52.7 47 0.001 30.4 6.6 77 81-162 7-88 (261)
31 cd06219 DHOD_e_trans_like1 FAD 52.0 58 0.0013 29.3 7.1 79 83-161 2-87 (248)
32 cd06216 FNR_iron_sulfur_bindin 52.0 81 0.0018 28.0 7.9 83 79-161 17-111 (243)
33 cd06221 sulfite_reductase_like 51.9 46 0.00099 30.2 6.4 75 184-259 2-85 (253)
34 cd06217 FNR_iron_sulfur_bindin 50.4 66 0.0014 28.1 7.0 82 81-162 3-97 (235)
35 cd06213 oxygenase_e_transfer_s 50.2 68 0.0015 28.1 7.1 79 81-161 2-90 (227)
36 PRK06567 putative bifunctional 48.8 50 0.0011 37.0 7.1 80 81-162 792-884 (1028)
37 cd06192 DHOD_e_trans_like FAD/ 48.3 54 0.0012 29.2 6.2 70 93-162 10-87 (243)
38 PF07944 DUF1680: Putative gly 48.3 47 0.001 33.8 6.4 43 109-164 452-494 (520)
39 cd06191 FNR_iron_sulfur_bindin 46.1 87 0.0019 27.5 7.1 78 83-162 2-92 (231)
40 PF13856 Gifsy-2: ATP-binding 45.2 50 0.0011 25.9 4.9 41 94-135 53-93 (95)
41 cd06218 DHOD_e_trans FAD/NAD b 45.0 45 0.00098 30.1 5.2 75 87-161 4-87 (246)
42 cd06189 flavin_oxioreductase N 44.2 73 0.0016 27.9 6.3 79 82-161 1-87 (224)
43 cd06211 phenol_2-monooxygenase 43.5 1.3E+02 0.0027 26.7 7.8 79 180-258 8-96 (238)
44 cd06210 MMO_FAD_NAD_binding Me 43.4 1.2E+02 0.0027 26.5 7.6 83 180-264 3-100 (236)
45 PRK10926 ferredoxin-NADP reduc 43.4 97 0.0021 28.0 7.1 78 81-161 6-93 (248)
46 cd06211 phenol_2-monooxygenase 43.4 1.1E+02 0.0023 27.1 7.3 81 81-161 8-98 (238)
47 PRK06222 ferredoxin-NADP(+) re 43.2 1.2E+02 0.0027 27.9 7.9 77 181-258 2-86 (281)
48 PF07944 DUF1680: Putative gly 42.5 64 0.0014 32.8 6.4 61 188-266 437-497 (520)
49 cd06212 monooxygenase_like The 42.4 1.1E+02 0.0025 26.7 7.3 79 180-259 2-91 (232)
50 cd06187 O2ase_reductase_like T 41.2 75 0.0016 27.6 5.8 75 86-161 3-87 (224)
51 cd06221 sulfite_reductase_like 41.0 69 0.0015 29.0 5.8 55 107-161 27-86 (253)
52 PRK08221 anaerobic sulfite red 40.9 95 0.0021 28.4 6.7 72 181-258 10-87 (263)
53 cd06217 FNR_iron_sulfur_bindin 40.3 1.4E+02 0.003 26.1 7.4 79 180-259 3-95 (235)
54 cd06195 FNR1 Ferredoxin-NADP+ 40.3 79 0.0017 28.0 6.0 76 84-161 2-89 (241)
55 PRK08345 cytochrome-c3 hydroge 40.0 1.3E+02 0.0029 27.9 7.6 82 80-161 6-96 (289)
56 PRK08051 fre FMN reductase; Va 39.9 90 0.0019 27.7 6.2 81 81-162 4-92 (232)
57 cd06192 DHOD_e_trans_like FAD/ 39.8 1E+02 0.0022 27.4 6.6 69 189-258 8-84 (243)
58 cd06215 FNR_iron_sulfur_bindin 39.7 1.3E+02 0.0028 26.2 7.1 79 83-161 2-92 (231)
59 COG2139 RPL21A Ribosomal prote 39.6 50 0.0011 27.1 4.1 52 144-200 27-78 (98)
60 cd06220 DHOD_e_trans_like2 FAD 38.9 1.1E+02 0.0023 27.2 6.6 73 83-161 2-79 (233)
61 cd06196 FNR_like_1 Ferredoxin 38.9 1.1E+02 0.0024 26.5 6.5 76 180-258 2-90 (218)
62 PRK07609 CDP-6-deoxy-delta-3,4 38.1 1.3E+02 0.0027 28.4 7.2 79 180-259 104-192 (339)
63 cd06213 oxygenase_e_transfer_s 37.3 1.7E+02 0.0037 25.6 7.5 81 180-264 2-93 (227)
64 PRK10684 HCP oxidoreductase, N 37.1 1.2E+02 0.0026 28.6 6.9 82 79-161 9-100 (332)
65 PRK05713 hypothetical protein; 36.8 1.2E+02 0.0026 28.4 6.9 76 181-258 94-177 (312)
66 PRK08345 cytochrome-c3 hydroge 36.6 1.9E+02 0.0041 26.9 8.1 81 179-259 6-95 (289)
67 PRK12778 putative bifunctional 36.2 1.2E+02 0.0026 32.2 7.4 80 83-162 3-89 (752)
68 TIGR01624 LRP1_Cterm LRP1 C-te 35.7 18 0.00039 26.2 0.8 18 65-82 32-49 (50)
69 cd06219 DHOD_e_trans_like1 FAD 35.6 1.6E+02 0.0034 26.6 7.2 76 182-258 2-85 (248)
70 PRK11872 antC anthranilate dio 35.2 1.9E+02 0.0042 27.5 8.0 82 177-259 105-198 (340)
71 cd06216 FNR_iron_sulfur_bindin 34.9 2.2E+02 0.0048 25.1 8.0 83 175-258 14-109 (243)
72 PRK07609 CDP-6-deoxy-delta-3,4 33.5 1.3E+02 0.0028 28.3 6.5 82 81-162 104-194 (339)
73 cd06212 monooxygenase_like The 33.3 1.7E+02 0.0036 25.7 6.8 81 81-161 2-92 (232)
74 PRK00054 dihydroorotate dehydr 32.9 2.7E+02 0.0059 25.0 8.3 75 181-259 7-90 (250)
75 cd06191 FNR_iron_sulfur_bindin 32.8 1.9E+02 0.0041 25.3 7.1 76 182-259 2-90 (231)
76 cd06215 FNR_iron_sulfur_bindin 32.5 2.1E+02 0.0046 24.8 7.3 76 182-258 2-90 (231)
77 cd06193 siderophore_interactin 32.5 1.2E+02 0.0027 26.9 5.9 44 119-162 65-111 (235)
78 cd06189 flavin_oxioreductase N 32.4 1.7E+02 0.0037 25.5 6.7 77 181-259 1-86 (224)
79 PRK12775 putative trifunctiona 31.9 1.3E+02 0.0029 33.4 7.1 78 83-161 3-89 (1006)
80 PRK06567 putative bifunctional 31.9 1.7E+02 0.0036 33.1 7.8 77 180-257 792-880 (1028)
81 PRK12718 flgL flagellar hook-a 31.6 1.2E+02 0.0026 31.4 6.3 36 107-143 261-296 (510)
82 TIGR00999 8a0102 Membrane Fusi 31.3 2.4E+02 0.0052 25.0 7.6 77 108-200 104-180 (265)
83 cd06209 BenDO_FAD_NAD Benzoate 29.9 2.2E+02 0.0048 24.8 7.0 80 81-161 3-92 (228)
84 cd06218 DHOD_e_trans FAD/NAD b 29.5 1.7E+02 0.0036 26.4 6.3 41 219-259 46-86 (246)
85 COG1661 Predicted DNA-binding 29.4 60 0.0013 28.2 3.2 53 140-192 68-124 (141)
86 cd06190 T4MO_e_transfer_like T 28.7 1.3E+02 0.0027 26.4 5.3 74 87-161 4-86 (232)
87 cd06263 MAM Meprin, A5 protein 28.7 71 0.0015 26.3 3.5 27 191-221 127-153 (157)
88 PRK12779 putative bifunctional 28.4 1.8E+02 0.0039 32.2 7.4 82 81-162 650-738 (944)
89 PTZ00274 cytochrome b5 reducta 28.2 2.3E+02 0.005 27.2 7.3 90 166-258 42-146 (325)
90 cd06214 PA_degradation_oxidore 28.1 2.4E+02 0.0053 24.7 7.0 80 81-161 3-96 (241)
91 cd06209 BenDO_FAD_NAD Benzoate 27.0 2.9E+02 0.0063 24.1 7.2 83 180-265 3-96 (228)
92 TIGR02911 sulfite_red_B sulfit 26.8 2.1E+02 0.0046 26.1 6.6 40 218-259 47-86 (261)
93 cd06184 flavohem_like_fad_nad_ 26.4 3.1E+02 0.0066 24.2 7.4 80 81-161 8-102 (247)
94 PRK15136 multidrug efflux syst 26.1 1.6E+02 0.0034 28.9 5.9 64 107-181 230-293 (390)
95 PF05142 DUF702: Domain of unk 25.7 31 0.00067 30.4 0.8 18 65-82 133-150 (154)
96 cd06187 O2ase_reductase_like T 25.5 2.4E+02 0.0052 24.3 6.4 68 189-258 8-85 (224)
97 PRK08051 fre FMN reductase; Va 25.3 2.3E+02 0.005 25.1 6.4 78 180-259 4-90 (232)
98 cd07557 trimeric_dUTPase Trime 24.8 1.3E+02 0.0029 22.7 4.1 58 195-255 28-87 (92)
99 PTZ00319 NADH-cytochrome B5 re 24.8 3.9E+02 0.0085 25.0 8.1 86 173-258 28-138 (300)
100 COG2830 Uncharacterized protei 24.6 13 0.00028 33.7 -1.8 51 102-161 72-122 (214)
101 PLN03116 ferredoxin--NADP+ red 24.0 4.8E+02 0.01 24.5 8.5 77 180-258 26-141 (307)
102 TIGR01843 type_I_hlyD type I s 23.9 3E+02 0.0066 26.1 7.3 56 144-201 318-375 (423)
103 TIGR03224 benzo_boxA benzoyl-C 23.9 2.8E+02 0.006 27.5 7.2 80 82-161 145-255 (411)
104 TIGR00498 lexA SOS regulatory 23.7 4.5E+02 0.0098 22.7 7.8 65 149-217 125-189 (199)
105 PRK09961 exoaminopeptidase; Pr 23.7 2.5E+02 0.0054 27.2 6.7 103 73-181 58-169 (344)
106 COG3533 Uncharacterized protei 23.2 1.8E+02 0.0039 30.6 5.8 99 110-224 438-545 (589)
107 cd06183 cyt_b5_reduct_like Cyt 23.1 3.2E+02 0.007 23.6 6.8 80 83-162 2-93 (234)
108 PRK05813 single-stranded DNA-b 23.1 6E+02 0.013 23.4 12.3 123 131-261 47-177 (219)
109 PRK12778 putative bifunctional 22.9 3.5E+02 0.0076 28.8 8.1 76 182-258 3-86 (752)
110 cd06194 FNR_N-term_Iron_sulfur 22.7 2.3E+02 0.005 24.6 5.7 76 85-161 2-85 (222)
111 PRK11872 antC anthranilate dio 22.5 3.5E+02 0.0075 25.7 7.3 83 79-161 106-199 (340)
112 PF02470 MCE: mce related prot 21.9 1.9E+02 0.0041 21.4 4.4 53 144-214 9-63 (81)
113 TIGR02971 heterocyst_DevB ABC 21.8 2.9E+02 0.0063 25.7 6.6 80 108-201 220-309 (327)
114 TIGR03224 benzo_boxA benzoyl-C 21.6 3.9E+02 0.0086 26.4 7.8 77 181-258 145-253 (411)
115 cd04496 SSB_OBF SSB_OBF: A sub 21.4 3.3E+02 0.0072 20.3 5.8 32 229-261 43-74 (100)
116 PF13856 Gifsy-2: ATP-binding 21.2 2E+02 0.0044 22.4 4.6 44 191-236 52-95 (95)
117 cd06208 CYPOR_like_FNR These f 21.2 3E+02 0.0064 25.4 6.4 77 180-258 10-121 (286)
118 KOG2415 Electron transfer flav 21.1 29 0.00063 35.8 -0.3 57 155-215 108-166 (621)
119 PF00436 SSB: Single-strand bi 20.9 1.3E+02 0.0028 22.9 3.4 32 229-261 47-78 (104)
120 PRK13289 bifunctional nitric o 20.7 4.4E+02 0.0095 25.3 7.7 78 83-161 158-250 (399)
No 1
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=100.00 E-value=8.4e-77 Score=529.59 Aligned_cols=195 Identities=43% Similarity=0.688 Sum_probs=188.2
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++.++ .++++|+++ .+++++++|||||||||||||+++.+ ++|+|++|||||++|||+.|+
T Consensus 1 MFTGiVe~~G~V~~i~~~~~-~~~l~i~~~~~~~~~l~~G~SIAvnGvCLTV~~i~~--~~f~vdvipETl~~TtL~~l~ 77 (200)
T TIGR00187 1 MFTGIIQGTAKLVSIKEKPL-FISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINK--NHFSVDLSPETLKRTNLGDLK 77 (200)
T ss_pred CCCEEeeEEEEEEEEEECCC-cEEEEEEeChHHhcccccCCEEEECcEEEEEEEEcC--CEEEEEEEHHHhhhcchhhCc
Confidence 99999999999999999875 788999987 57789999999999999999999998 899999999999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEe-CcccccceeeeecEEEcceeeeeeeeeCCCc
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKT-DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEE 230 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~-p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~ 230 (282)
+||+|||||||++|||+|||+|||||||+|+|.++++.+++++++|++ |+++++|+++|||||||||||||+++. ++
T Consensus 78 ~G~~VNLEral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~~~~~~~~~~p~~~~~yiv~KGsIaidGvSLTV~~v~--~~ 155 (200)
T TIGR00187 78 VGTWVNIERALKADGEIGGHFVSGHIDTTAEIAKIETSENNVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVT--ET 155 (200)
T ss_pred CCCEEEEcccCCCCCccCCeeEeEEccEEEEEEEEEEcCCcEEEEEEECCHHHHhccccCCEEEEeeeEEEEEeEc--CC
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999997 57
Q ss_pred EEEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHcc
Q 023449 231 CFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS 272 (282)
Q Consensus 231 ~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~ 272 (282)
+|+|+|||||+++|||+.+|+||+||||+|+|+|||+|+++.
T Consensus 156 ~f~v~lIP~T~~~T~l~~~~~Gd~VNiE~D~~~kyv~~~~~~ 197 (200)
T TIGR00187 156 RFCVSLIPHTLENTILGLKKLGDRVNIEIDMLGKAVADTLER 197 (200)
T ss_pred EEEEEEehHhHhhCccccCCCCCEEEEeEhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999853
No 2
>PLN02741 riboflavin synthase
Probab=100.00 E-value=8.7e-77 Score=527.35 Aligned_cols=193 Identities=81% Similarity=1.228 Sum_probs=185.4
Q ss_pred eeeeeeccEEEEEEEEe-CCCCcEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGA-SNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~-~~~~~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++ .++ .++++|+++.+++++++|||||||||||||+++++ ++|+|++|||||++|||+.|+
T Consensus 1 MFTGiVe~~G~I~~i~~~~~~-~~~l~i~~~~~~~~l~~G~SIAvnGvCLTV~~~~~--~~f~vdvipETl~~T~L~~l~ 77 (194)
T PLN02741 1 LFTGIVEEMGEVKSLGVTDDG-GFDLKIEASTVLDGVKLGDSIAVNGTCLTVTEFDG--DEFTVGLAPETLRKTSLGELK 77 (194)
T ss_pred CCCEEeCEEEEEEEEEecCCC-cEEEEEEcchhhcccccCCEEEECcEEEEEEEECC--CEEEEEEEHHHhhhCccccCC
Confidence 99999999999999998 765 68899986667889999999999999999999998 899999999999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
+||+|||||||++|||+|||+|||||||+|+|.++++.++++.++|++|+++++|+++|||||||||||||+++.+..++
T Consensus 78 ~G~~VNLEral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~~~~~~i~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~~~ 157 (194)
T PLN02741 78 TGSLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEPEGDSLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGC 157 (194)
T ss_pred CCCEEeeccCCcCCCccCCeeEeEECcEEEEEEEEEECCCcEEEEEEECHHHHcccccCcEEEEeeEEEEEEEeecCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999743579
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHH
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVER 268 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~ 268 (282)
|+|+|||||+++|||+.+|+||+||||+|+|+|||+|
T Consensus 158 f~v~lIP~T~~~T~l~~~k~Gd~VNiE~D~~~kyv~~ 194 (194)
T PLN02741 158 FNFMLVPYTQQKVVIPLKKVGDKVNLEVDILGKYVER 194 (194)
T ss_pred EEEEEcHHHHhhcccccCCCCCEEEEeEEchhhhhcC
Confidence 9999999999999999999999999999999999985
No 3
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-75 Score=517.13 Aligned_cols=194 Identities=52% Similarity=0.839 Sum_probs=183.1
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEe-cCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIR-AKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~-~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
||||||+++|+|.... + ++++.+. ++..+++++.|||||||||||||+++++ +.|+||++||||++|||+.|+
T Consensus 1 MFTGIIe~iG~V~~~~---~-~~~~~i~~~~~~~~d~~lGdSIAvnGvCLTVt~~~~--~~f~~dv~~ETl~~TnL~~~~ 74 (204)
T COG0307 1 MFTGIVEEIGKVKKVE---N-GITLTIESAKLILEDVKLGDSIAVNGVCLTVTEFNE--DGFSVDVMPETLRRTNLGDLK 74 (204)
T ss_pred CcceeeeeeEEEEecc---C-ceEEEEeecccccccCccCCeEEECCEEEEEEEECC--CcEEEEecHHHhhhcchhhcc
Confidence 9999999999999443 2 5778885 4567889999999999999999999999 899999999999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEE-eCcccccceeeeecEEEcceeeeeeeeeCCCc
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEE 230 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~-~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~ 230 (282)
+||+|||||||++|+|+|||+|||||||+|+|.++++++++++|+|. .|+++++|+++|||||||||||||+++. ++
T Consensus 75 ~G~~VNLERAl~~~~r~GGH~VsGHVDg~g~I~~i~~~~na~~~~~~~~~~~l~kyiv~KGsIavDGiSLTV~~v~--~~ 152 (204)
T COG0307 75 VGDKVNLERALKLGDRLGGHLVSGHVDGTGEIVKIEKDGNAVRFWFKAPPEELAKYIVEKGSIAVDGISLTVNEVE--DD 152 (204)
T ss_pred cCCEEeeehhccCCCccccEEEEeEEeeEEEEEEEEEcCCeEEEEEEcCCHHHHhhhcccceEEEeeEEEEEEEEc--CC
Confidence 99999999999999999999999999999999999999999999988 6699999999999999999999999998 68
Q ss_pred EEEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHccCC
Q 023449 231 CFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSSGF 274 (282)
Q Consensus 231 ~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~~~ 274 (282)
+|+|+|||||+++|+|+.+|+||+||||+|+++|||||++....
T Consensus 153 ~F~V~lIPhT~~~T~l~~~~~Gd~VNiE~D~l~kyver~l~~~~ 196 (204)
T COG0307 153 TFSVSLIPHTLERTTLGEKKVGDRVNIEIDVLAKYVERLLAAGK 196 (204)
T ss_pred EEEEEEEecchhhcchhhccCCCEEEEeEcHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999997553
No 4
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=100.00 E-value=4e-73 Score=507.93 Aligned_cols=197 Identities=37% Similarity=0.583 Sum_probs=185.8
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++.++ +++++|++| .+++++++|||||||||||||+++.+ ++|+|++||||+++|+|+.|+
T Consensus 1 MFtGiI~~vg~I~~i~~~~~-~~~l~i~~~~~~~~~l~~g~SIavnGVcLTV~~v~~--~~f~~~lipeTl~~T~l~~~~ 77 (206)
T PRK13020 1 MFTGIVQATAEVVAIHKKDG-LNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEG--DRVFFDVMEETLRLTNLADLR 77 (206)
T ss_pred CCCEEecEEEEEEEEEECCC-cEEEEEEeChhHhccCCCCCEEEECCEEEEEEEECC--CEEEEEEhHHHHhhCchhhcc
Confidence 99999999999999999875 788999976 46789999999999999999999998 899999999999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
+||+|||||||++|||+|||+|||||||+|+|.++++.+++++++|++|+++++|+++|||||||||||||+++. ++.
T Consensus 78 ~G~~VNlEral~~~~rlgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~i~~kgSIaidGvsLTV~~v~--~~~ 155 (206)
T PRK13020 78 VGDRVNIERSAKFGAEIGGHILSGHVDTTATVVEISDTEENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVD--ESE 155 (206)
T ss_pred CCCEEeeEecccCCCccCCEeEEEEccEEEEEEEEEEcCCCEEEEEEEChHHhcccccCCEEEEeeEEEEEEeEc--CCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 478
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHH----HHHHccCC
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYV----ERLLSSGF 274 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv----~~~l~~~~ 274 (282)
|+|+||||||++|||+.+|+||+||||+|+|+||+ +|++..+.
T Consensus 156 f~v~lIp~Tl~~T~l~~~k~G~~VNiE~D~~~k~~~~~v~~~~~~~~ 202 (206)
T PRK13020 156 FEVHLIPETLRATNLGAKKVGDLVNIEIDSQTQVIVDTVERVLAERL 202 (206)
T ss_pred EEEEEeHHHHhhcccccCCCCCEEEEeEeccchHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999666555 88875443
No 5
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=100.00 E-value=9.1e-72 Score=494.87 Aligned_cols=192 Identities=53% Similarity=0.812 Sum_probs=185.0
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP 152 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkv 152 (282)
|||||||++|+|.++++.++ .+++++++|..+.++++|||||||||||||+++++ ++|+|++|||||++|||+.|++
T Consensus 1 MFtGiV~~~g~V~~i~~~~~-~~~~~i~~~~~~~~l~~g~SIAvnGvcLTV~~~~~--~~f~~~l~~eTl~~T~l~~l~~ 77 (194)
T PRK09289 1 MFTGIVEEVGTVESIEPKGD-GLRLTIEAGKLLSDLKLGDSIAVNGVCLTVTEIDG--DSFTVDVSPETLRRTNLGDLKV 77 (194)
T ss_pred CCCEEeCeEEEEEEEEEcCC-cEEEEEEcCccccccccCCEEEEccEEEEEEEEcC--CEEEEEEEHHHhhhCchhhccC
Confidence 99999999999999999875 78899998765666999999999999999999998 8999999999999999999999
Q ss_pred CCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcEE
Q 023449 153 GSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECF 232 (282)
Q Consensus 153 Gd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~f 232 (282)
||+||||||+++|||+|||+|+||||++|+|.++++.+++++++|++|+.+++|+++|||||||||||||+++. +++|
T Consensus 78 G~~VNLEra~~~~~~~gGHm~tGhVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~--~~~f 155 (194)
T PRK09289 78 GDRVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEGNSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVD--GDRF 155 (194)
T ss_pred CCEEEEeEcccCCCcccceeEEEEEEEEEEEEEEEECCCcEEEEEECChHHhcccccCCEEEEccEEEEEEEEc--CCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 5789
Q ss_pred EEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHH
Q 023449 233 NFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERL 269 (282)
Q Consensus 233 ~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~ 269 (282)
+|++||||+++|||+.+|+||+||||+|+|+|||+|+
T Consensus 156 ~v~lipeTl~~T~l~~~k~G~~VNlE~D~~~kyv~~~ 192 (194)
T PRK09289 156 SVNLIPHTLENTTLGEKKVGDRVNLEIDLLAKYVERL 192 (194)
T ss_pred EEEEeHHHHhhCccccCCCCCEEEEeEehHHHHHHhh
Confidence 9999999999999999999999999999999999986
No 6
>KOG3310 consensus Riboflavin synthase alpha chain [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.8e-64 Score=432.99 Aligned_cols=198 Identities=73% Similarity=1.141 Sum_probs=191.8
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP 152 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkv 152 (282)
||||+||++|+|.+.....++++.++|.++.++++++.||||||||+||||++++. +.|+|.+.||||++|||++|+.
T Consensus 1 mftgive~mG~Vkd~~~~dd~Gf~~kI~A~~iL~Dch~GDSIAVNGtCLTVTeFn~--~~FtVGiaPEtlr~tnl~~~k~ 78 (210)
T KOG3310|consen 1 MFTGIVECMGEVKDLGMADDGGFDLKIGARVILEDCHLGDSIAVNGTCLTVTEFNA--EEFTVGIAPETLRKTNLEELKK 78 (210)
T ss_pred CccchHhhheehhhcCccccCCEEEEecCCeeeeecccCCeEEEccEEEEEEeecc--cceEEecCHHHhhhccHHHHhc
Confidence 89999999999999988777789999999889999999999999999999999999 9999999999999999999999
Q ss_pred CCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEE-eCcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 153 GSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 153 Gd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~-~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
|+.||||||+....|||||+||||||++|.|++.+.+|++.|+.|+ -++.+.+||++||+||+||.||||.++++++.+
T Consensus 79 G~pVNLERAv~~~~RmGGH~VQGHVDtva~Ivs~~~eG~si~f~f~~rD~~~lKYIV~KGfiavDGTSLTi~~Vd~~~s~ 158 (210)
T KOG3310|consen 79 GSPVNLERAVQPVSRMGGHVVQGHVDTVAVIVSMEVEGDSIWFKFKLRDKGLLKYIVPKGFIAVDGTSLTIVDVDDEESC 158 (210)
T ss_pred CCccchhhhccccccccceEEEeeecceEEEEEecccCCEEEEEEEecCccceEEEecccEEEEcCceEEEEEEcCCCCe
Confidence 9999999999999999999999999999999999999999999999 478899999999999999999999999988889
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHcc
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS 272 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~ 272 (282)
|.++.|.||+++..+..+|+||+||+|+|+++||+||++..
T Consensus 159 F~imMI~yTQ~nVimp~KkiGd~VN~EVD~~GKy~Ekl~~~ 199 (210)
T KOG3310|consen 159 FNIMMIAYTQQNVIMPTKKIGDKVNLEVDIMGKYVEKLLTS 199 (210)
T ss_pred EEEEEeeeccccEEEechhcCceeeEEEehHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999864
No 7
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=99.97 E-value=8.4e-32 Score=239.29 Aligned_cols=99 Identities=30% Similarity=0.431 Sum_probs=93.3
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
.++|+++|+||||||||||++|+|.++++.++ .++++|++| .+++++.+|||||||||||||+++++ ++|+|++||
T Consensus 85 ra~~~~~~~gGHm~tGhVd~~g~I~~i~~~~~-~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~~--~~f~v~lip 161 (194)
T PRK09289 85 RALRLGDRLGGHIVSGHVDGTGEIVSIEKEGN-SVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDG--DRFSVNLIP 161 (194)
T ss_pred EcccCCCcccceeEEEEEEEEEEEEEEEECCC-cEEEEEECChHHhcccccCCEEEEccEEEEEEEEcC--CEEEEEEeH
Confidence 38899999999999999999999999999875 788999976 46789999999999999999999998 899999999
Q ss_pred HHHhhccCCCCCCCCeeeccCCC
Q 023449 140 ETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~al 162 (282)
|||++|||+.|++||+||||.|+
T Consensus 162 eTl~~T~l~~~k~G~~VNlE~D~ 184 (194)
T PRK09289 162 HTLENTTLGEKKVGDRVNLEIDL 184 (194)
T ss_pred HHHhhCccccCCCCCEEEEeEeh
Confidence 99999999999999999999996
No 8
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=99.97 E-value=1.5e-30 Score=233.33 Aligned_cols=99 Identities=27% Similarity=0.429 Sum_probs=93.4
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
.++|+++|+||||||||||++|+|.++++.++ .+++++.+| .+++|+..|||||||||||||+++.+ +.|+|++||
T Consensus 86 ral~~~~rlgGH~v~GhVd~~~~i~~i~~~~~-~~~~~i~~~~~~~~~i~~kgSIaidGvsLTV~~v~~--~~f~v~lIp 162 (206)
T PRK13020 86 RSAKFGAEIGGHILSGHVDTTATVVEISDTEE-NYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDE--SEFEVHLIP 162 (206)
T ss_pred ecccCCCccCCEeEEEEccEEEEEEEEEEcCC-CEEEEEEEChHHhcccccCCEEEEeeEEEEEEeEcC--CEEEEEEeH
Confidence 38999999999999999999999999999876 788888865 57899999999999999999999998 899999999
Q ss_pred HHHhhccCCCCCCCCeeeccCCC
Q 023449 140 ETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~al 162 (282)
||+++|||+.+++||+||||.|+
T Consensus 163 ~Tl~~T~l~~~k~G~~VNiE~D~ 185 (206)
T PRK13020 163 ETLRATNLGAKKVGDLVNIEIDS 185 (206)
T ss_pred HHHhhcccccCCCCCEEEEeEec
Confidence 99999999999999999999995
No 9
>PLN02741 riboflavin synthase
Probab=99.96 E-value=3.2e-30 Score=229.38 Aligned_cols=99 Identities=28% Similarity=0.325 Sum_probs=93.4
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEc--CCcceEEEEe
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFG--TQLEDFTVGL 137 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~--~~~~~F~v~l 137 (282)
.+||+++|+|||+++||||++|+|.++++.++ ++.++|+.| .+++|+.+|||||||||||||++++ + ++|+|++
T Consensus 86 ral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~-~~~~~i~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~--~~f~v~l 162 (194)
T PLN02741 86 RALRPGSRMGGHFVQGHVDGTGTIVEQEPEGD-SLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEE--GCFNFML 162 (194)
T ss_pred cCCcCCCccCCeeEeEECcEEEEEEEEEECCC-cEEEEEEECHHHHcccccCcEEEEeeEEEEEEEeecCC--CEEEEEE
Confidence 38999999999999999999999999999876 788888865 5889999999999999999999998 6 8999999
Q ss_pred eHHHHhhccCCCCCCCCeeeccCCC
Q 023449 138 SPETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 138 ipETL~~T~L~~lkvGd~VNLE~al 162 (282)
||||+++|||+.+++||+||||.|+
T Consensus 163 IP~T~~~T~l~~~k~Gd~VNiE~D~ 187 (194)
T PLN02741 163 VPYTQQKVVIPLKKVGDKVNLEVDI 187 (194)
T ss_pred cHHHHhhcccccCCCCCEEEEeEEc
Confidence 9999999999999999999999995
No 10
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=99.96 E-value=8.3e-30 Score=227.71 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=93.5
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEec-C-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEee
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRA-K-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLS 138 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~-~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~li 138 (282)
.++|+++|+|||+++||||++|+|.++++.++ ++.++++. | .+++|+.+|||||||||||||+++++ ++|+|.+|
T Consensus 86 ral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~-~~~~~~~~~p~~~~~yiv~KGsIaidGvSLTV~~v~~--~~f~v~lI 162 (200)
T TIGR00187 86 RALKADGEIGGHFVSGHIDTTAEIAKIETSEN-NVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVTE--TRFCVSLI 162 (200)
T ss_pred ccCCCCCccCCeeEeEEccEEEEEEEEEEcCC-cEEEEEEECCHHHHhccccCCEEEEeeeEEEEEeEcC--CEEEEEEe
Confidence 48999999999999999999999999999876 78888887 4 58899999999999999999999998 89999999
Q ss_pred HHHHhhccCCCCCCCCeeeccCCC
Q 023449 139 PETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 139 pETL~~T~L~~lkvGd~VNLE~al 162 (282)
|||+++|||+.+++||+||||.|+
T Consensus 163 P~T~~~T~l~~~~~Gd~VNiE~D~ 186 (200)
T TIGR00187 163 PHTLENTILGLKKLGDRVNIEIDM 186 (200)
T ss_pred hHhHhhCccccCCCCCEEEEeEhh
Confidence 999999999999999999999996
No 11
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=99.95 E-value=6.3e-29 Score=221.68 Aligned_cols=99 Identities=30% Similarity=0.420 Sum_probs=93.5
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEe-cC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEee
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIR-AK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLS 138 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~-~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~li 138 (282)
.+||+++|+|||++|||||++|+|.++++.++ ++++++. +| .+++|+.+||||||||+||||.++.+ ++|+|.+|
T Consensus 83 RAl~~~~r~GGH~VsGHVDg~g~I~~i~~~~n-a~~~~~~~~~~~l~kyiv~KGsIavDGiSLTV~~v~~--~~F~V~lI 159 (204)
T COG0307 83 RALKLGDRLGGHLVSGHVDGTGEIVKIEKDGN-AVRFWFKAPPEELAKYIVEKGSIAVDGISLTVNEVED--DTFSVSLI 159 (204)
T ss_pred hhccCCCccccEEEEeEEeeEEEEEEEEEcCC-eEEEEEEcCCHHHHhhhcccceEEEeeEEEEEEEEcC--CEEEEEEE
Confidence 48999999999999999999999999999886 7889977 43 58899999999999999999999998 99999999
Q ss_pred HHHHhhccCCCCCCCCeeeccCCC
Q 023449 139 PETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 139 pETL~~T~L~~lkvGd~VNLE~al 162 (282)
|||+++|+|+.+++||+||||.|+
T Consensus 160 PhT~~~T~l~~~~~Gd~VNiE~D~ 183 (204)
T COG0307 160 PHTLERTTLGEKKVGDRVNIEIDV 183 (204)
T ss_pred ecchhhcchhhccCCCEEEEeEcH
Confidence 999999999999999999999997
No 12
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=99.95 E-value=4.5e-28 Score=189.48 Aligned_cols=84 Identities=44% Similarity=0.697 Sum_probs=74.0
Q ss_pred eeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCC
Q 023449 75 TGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPG 153 (282)
Q Consensus 75 TGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvG 153 (282)
|||||++|+|.++++.++ +++++|..| ..+.++..|||||||||||||+++.+ ++|+|+++||||++|+|+.|++|
T Consensus 1 tGiI~~~g~I~~i~~~~~-~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~~--~~f~~~l~~eTl~~T~l~~~~~G 77 (85)
T PF00677_consen 1 TGIIDGTGKIISIEKNGD-SQRLRIEIPDKILSDLKIGGSIAVNGVCLTVTDINE--DWFEVDLIPETLRRTTLGNLKVG 77 (85)
T ss_dssp -S--SEEEEEEEEEEESS-EEEEEEEESTGGGGTG-TTSEEEETTEEEEEEEEET--TEEEEEEEHHHHHCSSGGG--TT
T ss_pred CcCCCEEEEEEEEEECCC-CEEEEEEcCHHHHhhCccCcEEEECCeeeEEEEecC--CEEEEechHHHhhhchhccCCCC
Confidence 799999999999999876 789999977 67888999999999999999999999 99999999999999999999999
Q ss_pred CeeeccCC
Q 023449 154 SLVNLERA 161 (282)
Q Consensus 154 d~VNLE~a 161 (282)
|+||||+|
T Consensus 78 ~~VNlE~d 85 (85)
T PF00677_consen 78 DRVNLERD 85 (85)
T ss_dssp SEEEEEEE
T ss_pred CEEEEeEC
Confidence 99999986
No 13
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=99.95 E-value=1.7e-27 Score=186.27 Aligned_cols=85 Identities=36% Similarity=0.560 Sum_probs=73.7
Q ss_pred eEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCC
Q 023449 174 QGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQ 253 (282)
Q Consensus 174 ~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd 253 (282)
+||||++|+|.++++.+++++++|++|+....++..+||||+|||||||+++. +++|++.++|||+++|||+.+|+||
T Consensus 1 tGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~--~~~f~~~l~~eTl~~T~l~~~~~G~ 78 (85)
T PF00677_consen 1 TGIIDGTGKIISIEKNGDSQRLRIEIPDKILSDLKIGGSIAVNGVCLTVTDIN--EDWFEVDLIPETLRRTTLGNLKVGD 78 (85)
T ss_dssp -S--SEEEEEEEEEEESSEEEEEEEESTGGGGTG-TTSEEEETTEEEEEEEEE--TTEEEEEEEHHHHHCSSGGG--TTS
T ss_pred CcCCCEEEEEEEEEECCCCEEEEEEcCHHHHhhCccCcEEEECCeeeEEEEec--CCEEEEechHHHhhhchhccCCCCC
Confidence 69999999999999999999999999955555555669999999999999998 5799999999999999999999999
Q ss_pred EeEEehh
Q 023449 254 KVNLEVD 260 (282)
Q Consensus 254 ~VNiE~D 260 (282)
+||||.|
T Consensus 79 ~VNlE~d 85 (85)
T PF00677_consen 79 RVNLERD 85 (85)
T ss_dssp EEEEEEE
T ss_pred EEEEeEC
Confidence 9999987
No 14
>KOG3310 consensus Riboflavin synthase alpha chain [Coenzyme transport and metabolism]
Probab=99.75 E-value=1.3e-18 Score=151.86 Aligned_cols=100 Identities=24% Similarity=0.278 Sum_probs=91.6
Q ss_pred cccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEec--CcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 62 GTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRA--KTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 62 ~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~--~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
++....|||||.++||||++|.|.+.+..++ ++++.++. +.+++|+.+||.||+||.||||++++++...|.+..|.
T Consensus 87 Av~~~~RmGGH~VQGHVDtva~Ivs~~~eG~-si~f~f~~rD~~~lKYIV~KGfiavDGTSLTi~~Vd~~~s~F~imMI~ 165 (210)
T KOG3310|consen 87 AVQPVSRMGGHVVQGHVDTVAVIVSMEVEGD-SIWFKFKLRDKGLLKYIVPKGFIAVDGTSLTIVDVDDEESCFNIMMIA 165 (210)
T ss_pred hccccccccceEEEeeecceEEEEEecccCC-EEEEEEEecCccceEEEecccEEEEcCceEEEEEEcCCCCeEEEEEee
Confidence 5667889999999999999999999999886 78888884 46889999999999999999999998654789999999
Q ss_pred HHHhhccCCCCCCCCeeeccCCC
Q 023449 140 ETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~al 162 (282)
+|.++-.....++||+||||.++
T Consensus 166 yTQ~nVimp~KkiGd~VN~EVD~ 188 (210)
T KOG3310|consen 166 YTQQNVIMPTKKIGDKVNLEVDI 188 (210)
T ss_pred eccccEEEechhcCceeeEEEeh
Confidence 99999999999999999999986
No 15
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=86.46 E-value=6.2 Score=30.17 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=47.3
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccc-------cceeeeecEEEcc----eeeeeeeeeCCCcE--EEEEeehhhhhhhcC
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLL-------KYIVPKGFIAIDG----TSLTVVDVFDEEEC--FNFMLVAYTQQKVVI 246 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~-------~yiv~KGSIavDG----iSLTI~~v~~~~~~--f~V~LIP~Tl~~T~l 246 (282)
++|+++++. ++...++|+.|.... .|+.-+.. ++| =+.|+.+..+..+. |.|...|.-.-..-|
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~--~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L 79 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVP--INGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYL 79 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEE--ETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEc--cCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHH
Confidence 678887765 666779999985432 23322211 444 35677666543334 455555555555577
Q ss_pred CCCcCCCEeEEe
Q 023449 247 PLKKVGQKVNLE 258 (282)
Q Consensus 247 ~~~kvGd~VNiE 258 (282)
..+++||.|.|+
T Consensus 80 ~~l~~Gd~v~i~ 91 (99)
T PF00970_consen 80 HQLKPGDEVEIR 91 (99)
T ss_dssp HTSCTTSEEEEE
T ss_pred HhCCCCCEEEEE
Confidence 889999999886
No 16
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=77.44 E-value=9.5 Score=29.11 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEEcce--------eeeceEEcCCcceEEEEe--eHHHHhhccCCC
Q 023449 82 GEIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAVNGT--------CLTVTEFGTQLEDFTVGL--SPETLRKTSLIE 149 (282)
Q Consensus 82 G~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAVNGV--------cLTV~~i~~~~~~F~v~l--ipETL~~T~L~~ 149 (282)
++|.++++..++...|+++.+. -.....+|..|.|..- .+|+.+...+.+.|++.+ .+.-.-..-|.+
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~~ 81 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLHQ 81 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHHT
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHHh
Confidence 5778887765555667777542 2235678887766433 445555543223455544 434444456788
Q ss_pred CCCCCeeeccCC
Q 023449 150 LEPGSLVNLERA 161 (282)
Q Consensus 150 lkvGd~VNLE~a 161 (282)
+++||.|.++-+
T Consensus 82 l~~Gd~v~i~gP 93 (99)
T PF00970_consen 82 LKPGDEVEIRGP 93 (99)
T ss_dssp SCTTSEEEEEEE
T ss_pred CCCCCEEEEEEc
Confidence 999999999866
No 17
>PRK05802 hypothetical protein; Provisional
Probab=75.03 E-value=14 Score=35.39 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=49.7
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccc-eeeeecEEEc----c----eeeeeeeeeCCCcEEEEEeehhhhhhhcCCCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKY-IVPKGFIAID----G----TSLTVVDVFDEEECFNFMLVAYTQQKVVIPLK 249 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~y-iv~KGSIavD----G----iSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~ 249 (282)
.++|+++++. ++.+.++|+.|..+... .-+--+|.|. | ..++|.+...+++.+++.+--.=.....|..+
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~l 145 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAKL 145 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhcC
Confidence 4678877766 67788899988654322 2344444443 3 67888877533455666664433333345689
Q ss_pred cCCCEeEEe
Q 023449 250 KVGQKVNLE 258 (282)
Q Consensus 250 kvGd~VNiE 258 (282)
++||.|.|.
T Consensus 146 ~~Gd~l~v~ 154 (320)
T PRK05802 146 NKGDEILLR 154 (320)
T ss_pred CCCCEEEEe
Confidence 999998874
No 18
>PF13437 HlyD_3: HlyD family secretion protein
Probab=73.47 E-value=18 Score=27.98 Aligned_cols=80 Identities=13% Similarity=0.280 Sum_probs=52.5
Q ss_pred ccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC-CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEE
Q 023449 109 HLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE-PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSME 187 (282)
Q Consensus 109 ~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk-vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~ 187 (282)
..|+.|.-+..=++|.+.+. -++++.+- .+.++.++ +|+.|.+..+ .+ -.+...|.|.-+.. ..+
T Consensus 16 ~~G~~v~~g~~l~~i~~~~~--~~v~~~v~-----~~~~~~i~~~g~~v~v~~~--~~---~~~~~~g~V~~I~~--~~~ 81 (105)
T PF13437_consen 16 QPGEVVSAGQPLAEIVDTDD--LWVEAYVP-----EKDIARIKDPGQKVTVRLD--PG---PEKTIEGKVSSISP--SPD 81 (105)
T ss_pred CCCCEECCCCEEEEEEccce--EEEEEEEC-----hHhhcceEeCCCEEEEEEC--CC---CCcEEEEEEEEEeC--ccc
Confidence 34555554444446666544 45666543 45667887 9999999988 12 12478888888887 335
Q ss_pred ecCCEEEEEEEeCcc
Q 023449 188 PEEDSLWIKVKTDKS 202 (282)
Q Consensus 188 ~~~~~~~~~i~~p~~ 202 (282)
+.++.+.++++++..
T Consensus 82 ~~~~~~~v~~~i~~~ 96 (105)
T PF13437_consen 82 PQGGTYRVEISIDNP 96 (105)
T ss_pred CCCcEEEEEEEECCC
Confidence 567788888888765
No 19
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=72.45 E-value=11 Score=34.54 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=51.1
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc-----ceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCe
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN-----GTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSL 155 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN-----GVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~ 155 (282)
.++|.++++..+..+.|++..+. ..++|..|.+. .-.+++.+..+ +.|++.+-..-.-...|..+++||.
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~~---~~~pGQfi~l~~~~~~~~pySi~~~~~--~~~~~~Ik~~G~~S~~L~~l~~Gd~ 83 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVDG---PVKPGQFFEVSLPKVGEAPISVSDYGD--GYIDLTIRRVGKVTDEIFNLKEGDK 83 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCCC---CCCCCceEEEEeCCCCcceeeccCCCC--CEEEEEEEeCCchhhHHHhCCCCCE
Confidence 37788888765556777776541 45778886664 25667666554 6777777554333345667999999
Q ss_pred eeccCC
Q 023449 156 VNLERA 161 (282)
Q Consensus 156 VNLE~a 161 (282)
|.++-+
T Consensus 84 v~v~gP 89 (263)
T PRK08221 84 LFLRGP 89 (263)
T ss_pred EEEECC
Confidence 998776
No 20
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=66.36 E-value=24 Score=32.75 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c--eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCe
Q 023449 82 GEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G--TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSL 155 (282)
Q Consensus 82 G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G--VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~ 155 (282)
++|.++++..++.+.+++.++......++|..+.+- | ..+++.+...+.+.+++.+-..=.-...|.++++||.
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd~ 81 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGDS 81 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCCE
Confidence 467777765555677888765432346778766652 3 4788887753214566655432222234568899999
Q ss_pred e-eccCC
Q 023449 156 V-NLERA 161 (282)
Q Consensus 156 V-NLE~a 161 (282)
| .+.-+
T Consensus 82 v~~i~GP 88 (281)
T PRK06222 82 ILDVVGP 88 (281)
T ss_pred EeeEEcC
Confidence 9 68877
No 21
>PRK05802 hypothetical protein; Provisional
Probab=65.46 E-value=28 Score=33.25 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=52.8
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc-c-CCCccCCcEEEc----c----eeeeceEEcCCcceEEEEeeHHHHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV-L-EGVHLGDSIAVN----G----TCLTVTEFGTQLEDFTVGLSPETLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~-l-~~i~~ggSIAVN----G----VcLTV~~i~~~~~~F~v~lipETL~~T~L~~l 150 (282)
.++|.++++..++.+.|+++.+.. . ....+|..+.+. | ..++|.+...+.+.+++.+--.=.....|.++
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~l 145 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAKL 145 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhcC
Confidence 467777777655567888886532 2 236899988775 3 67777766432145666553322223345689
Q ss_pred CCCCeeeccCCC
Q 023449 151 EPGSLVNLERAV 162 (282)
Q Consensus 151 kvGd~VNLE~al 162 (282)
++||.|.+.-++
T Consensus 146 ~~Gd~l~v~GP~ 157 (320)
T PRK05802 146 NKGDEILLRGPY 157 (320)
T ss_pred CCCCEEEEeCCC
Confidence 999999999885
No 22
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=65.33 E-value=11 Score=37.19 Aligned_cols=63 Identities=17% Similarity=0.372 Sum_probs=43.4
Q ss_pred CccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEE
Q 023449 108 VHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTG 181 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g 181 (282)
+.+|+.|.----=++++..+. -|...+ ++.|-|.+.++|+.|.++.+...++ .-+.|||++++
T Consensus 224 v~~G~~V~~G~~l~alVp~~~--~yV~An-----FkETqL~~~r~Gq~a~I~~da~~~~----~~~~G~v~~i~ 286 (352)
T COG1566 224 VRVGQYVSAGTPLMALVPLDS--FYVVAN-----FKETQLARVRPGQPAEITLDAYPGN----GVVEGIVEGIA 286 (352)
T ss_pred ccCCCeecCCCceEEEecccc--eEEEee-----eeeeecCcccCCCeEEEEEEcCCCc----eEEEEEEEEec
Confidence 556666655433344555444 344433 6789999999999999999976554 66788888776
No 23
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=60.98 E-value=22 Score=28.60 Aligned_cols=98 Identities=20% Similarity=0.311 Sum_probs=59.6
Q ss_pred CCCCCCCeeeccCCCCCCCccCCceE-----eEEEeEEEEEeEEEecCCEEEEEEEeCccccc------cee-e-eecEE
Q 023449 148 IELEPGSLVNLERAVQPTSRMGGHFV-----QGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLK------YIV-P-KGFIA 214 (282)
Q Consensus 148 ~~lkvGd~VNLE~al~~gdrlGGH~V-----~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~------yiv-~-KGSIa 214 (282)
..+++|+.+.+-...... .|++. .|.|=..+.+. -.++...+.|.+++++.+ |.+ + .|.+.
T Consensus 8 ~~~~~Ge~~~v~v~~~~~---~~~~~~~v~s~g~I~~~~~~~---~~~~~~~~~~~v~~~~~P~~~v~~~~v~~~~g~~~ 81 (136)
T PF07703_consen 8 DSYKPGETAKVTVQSPFP---NGTFLYLVESRGKIVSTGSVE---LKNGSTTFEFPVTPDMAPNFYVLAYYVRPADGEVV 81 (136)
T ss_dssp SSB-TTSEEEEEEEEESC---ESEEEEEEEETTEEEEEEEEE---CTTTSSEEEEEE-GGGTSEEEEEEEEETTCTCEEE
T ss_pred CCcCCCCEEEEEEEcCCC---ccEEEEEEEECCeEEEEEEEE---ecCCcEEEEEecchhcCCcEEEEEEEEcCCCCeEE
Confidence 467899988887765544 22222 33333333332 234444677777766543 333 4 78888
Q ss_pred EcceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEehhh
Q 023449 215 IDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDI 261 (282)
Q Consensus 215 vDGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Di 261 (282)
-|=+.+.|.... ...+++..-| ...+||+.+++++..
T Consensus 82 ~~s~~i~V~~~~--~~~v~l~~~~--------~~~~Pg~~~~~~i~~ 118 (136)
T PF07703_consen 82 ADSVWIEVEPCF--ELKVELTASP--------DEYKPGEEVTLRIKA 118 (136)
T ss_dssp EEEEEEEBGCSG--SSSEEEEESS--------SSBTTTSEEEEEEEE
T ss_pred EEEEEEEecccc--cceEEEEEec--------ceeCCCCEEEEEEEe
Confidence 888888888833 3345555543 678899999998754
No 24
>PRK05713 hypothetical protein; Provisional
Probab=60.51 E-value=33 Score=32.19 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=49.6
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c---eeeeceEEcCCcceEEEEe--eHHHHhhccCCCCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G---TCLTVTEFGTQLEDFTVGL--SPETLRKTSLIELEPG 153 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G---VcLTV~~i~~~~~~F~v~l--ipETL~~T~L~~lkvG 153 (282)
.++|.++++..++-+.++++.+..+ ...+|..+.|- | -++++.+...+.+.+++.+ .+.=.-...|.++++|
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~-~~~~GQfv~l~~~~~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l~~G 171 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPL-RYRAGQHLVLWTAGGVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQVG 171 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcC-CcCCCCEEEEecCCCcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcCCCC
Confidence 3889999886555677887754322 46678877752 2 3667766532114444444 3443223346789999
Q ss_pred CeeeccCC
Q 023449 154 SLVNLERA 161 (282)
Q Consensus 154 d~VNLE~a 161 (282)
|.|+++-+
T Consensus 172 d~v~l~~p 179 (312)
T PRK05713 172 DLLRLGEL 179 (312)
T ss_pred CEEEEccC
Confidence 99998655
No 25
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=59.03 E-value=12 Score=28.80 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=29.6
Q ss_pred ecCCEEEEEEEeCcccccceeee--ecEEEcceeeeeeeee-------CCCcEEEEEeehhhhhhhcCCCCcCCCEeEEe
Q 023449 188 PEEDSLWIKVKTDKSLLKYIVPK--GFIAIDGTSLTVVDVF-------DEEECFNFMLVAYTQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 188 ~~~~~~~~~i~~p~~l~~yiv~K--GSIavDGiSLTI~~v~-------~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE 258 (282)
+.++.|.+ +.+|.+..+-+-.+ |+|.|-| ||+... ..+..+-+.|--+-.+.. .+..||.|.+|
T Consensus 7 ~~~~~~~f-v~vP~~v~~~l~~~~~g~v~V~~---tI~g~~~~~sl~p~g~G~~~Lpv~~~vRk~~---g~~~Gd~V~v~ 79 (80)
T PF08922_consen 7 KGEGGWTF-VEVPFDVAEELGEGGWGRVPVRG---TIDGHPWRTSLFPMGNGGYILPVKAAVRKAI---GKEAGDTVEVT 79 (80)
T ss_dssp E-TTS-EE-EE--S-HHHHH--S--S-EEEEE---EETTEEEEEEEEESSTT-EEEEE-HHHHHHH---T--TTSEEEEE
T ss_pred ecCCceEE-EEeCHHHHHHhccccCCceEEEE---EECCEEEEEEEEECCCCCEEEEEcHHHHHHc---CCCCCCEEEEE
Confidence 33334444 88999888888777 8887766 555532 011223333333333333 35689998887
Q ss_pred h
Q 023449 259 V 259 (282)
Q Consensus 259 ~ 259 (282)
+
T Consensus 80 l 80 (80)
T PF08922_consen 80 L 80 (80)
T ss_dssp E
T ss_pred C
Confidence 3
No 26
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=57.33 E-value=44 Score=30.54 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=74.2
Q ss_pred CCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEe-
Q 023449 106 EGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIV- 184 (282)
Q Consensus 106 ~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~- 184 (282)
.++.+|+.|.-.-..++|.+.+. -++.+.+- ...+..+++|+.|.+...... +++-++|.|..+....
T Consensus 173 ~~~~~g~~v~~g~~l~~i~~~~~--~~v~~~v~-----e~~~~~i~~g~~~~v~~~~~~----~~~~~~g~v~~i~~~~~ 241 (328)
T PF12700_consen 173 INVNPGQYVAAGQPLFTIADLSN--LYVEAYVP-----ESDASKIKVGQKVEVTIDAPD----NGKSFTGKVSSISPSAS 241 (328)
T ss_dssp -TT-TT-EETSTTCSEEEEEESE--EEEEEEEE-----CCGTTTHTTTGEEEEEETTSS-----SSEEEEEEEEEESSET
T ss_pred eccCCCCEECCCceeeeeccCCc--ceeeeccC-----HHHHHhccCCcEEEEEEEeec----CCCceeeEEeecCCccc
Confidence 35677888877777778888876 56777654 556778889999777544332 2456666655443221
Q ss_pred -------EEE------ecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCC-cEEEEEeehhhhhhhcC-CCC
Q 023449 185 -------SME------PEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEE-ECFNFMLVAYTQQKVVI-PLK 249 (282)
Q Consensus 185 -------~i~------~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~-~~f~V~LIP~Tl~~T~l-~~~ 249 (282)
.+. ..|....+.|.... --.+++|+..|.-++=...|--+.++. ..-.|.+....-..+-. ..+
T Consensus 242 ~~~~v~~~~~~~~~~l~~g~~v~v~i~~~~-~~~~~VP~~Ai~~~~~~~~V~v~~~~~~~~~~V~v~~~~~~~~~V~~GL 320 (328)
T PF12700_consen 242 RTFKVRVSLDNPNGNLRPGMFVEVSIILGS-ENGLVVPKSAIIEEDGKYYVYVVEDGKAEKRPVKVGEEDDDYVEVISGL 320 (328)
T ss_dssp TEEEEEEEEE-SSS-S-TT-EEEEEEESEE-SCEEEEEGGGEEETTCCEEEESCTSSEEEEEE-EEEEECSSEEEESSSS
T ss_pred eeeEEEEEeccccchhhhcccccceecccc-ccEEEEcChhhcccccceEEEEEECCEEEEEEEEEEEEcCCEEEEcCCC
Confidence 010 11222333333333 334567777776665444444332211 13445555555555555 558
Q ss_pred cCCCEeE
Q 023449 250 KVGQKVN 256 (282)
Q Consensus 250 kvGd~VN 256 (282)
+.||+|=
T Consensus 321 ~~gd~Vv 327 (328)
T PF12700_consen 321 KEGDKVV 327 (328)
T ss_dssp STT-EEE
T ss_pred CCCCEEE
Confidence 8888763
No 27
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=55.00 E-value=64 Score=29.06 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=49.9
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c------eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G------TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP 152 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G------VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkv 152 (282)
.++|.++++..++.+.+++..+. .....+|..|.+. + -.+|+.+..+ +.+++.+-..-.-...|.++++
T Consensus 6 ~~~V~~~~~~t~d~~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~l~l~Vk~~G~~t~~l~~l~~ 82 (250)
T PRK00054 6 NMKIVENKEIAPNIYTLVLDGEK-VFDMKPGQFVMVWVPGVEPLLERPISISDIDK--NEITILYRKVGEGTKKLSKLKE 82 (250)
T ss_pred EEEEEEEEEecCCeEEEEEeCcc-ccCCCCCcEEEEEeCCCCCcCceeeEEeeeCC--CEEEEEEEEcChHHHHHhcCCC
Confidence 46777777755556777877543 2346788887764 2 2556766654 5666666543222234567899
Q ss_pred CCeeeccCC
Q 023449 153 GSLVNLERA 161 (282)
Q Consensus 153 Gd~VNLE~a 161 (282)
||.|.++-+
T Consensus 83 G~~v~i~gP 91 (250)
T PRK00054 83 GDELDIRGP 91 (250)
T ss_pred CCEEEEEcc
Confidence 999999876
No 28
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=54.13 E-value=53 Score=28.86 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=51.1
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc-----cCCCccCCcEEEc--c----eeeeceEEcCCcceEEEEe--eHHHHhhccC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV-----LEGVHLGDSIAVN--G----TCLTVTEFGTQLEDFTVGL--SPETLRKTSL 147 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~-----l~~i~~ggSIAVN--G----VcLTV~~i~~~~~~F~v~l--ipETL~~T~L 147 (282)
.++|.++++..++.+.+.++++.. .....+|..+.+- | =++|+.+...+.+.+++.+ .+.-.-.+-|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l 82 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYL 82 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCCCCEEEEEEEEcCCCccchhh
Confidence 467888887665577788886532 2357788887763 3 2677776543114555544 3333333445
Q ss_pred CC-CCCCCeeeccCC
Q 023449 148 IE-LEPGSLVNLERA 161 (282)
Q Consensus 148 ~~-lkvGd~VNLE~a 161 (282)
.. +++||.|+++-+
T Consensus 83 ~~~~~~Gd~v~i~gP 97 (236)
T cd06210 83 ETRAKVGQRLNLRGP 97 (236)
T ss_pred hhCcCCCCEEEEecC
Confidence 54 899999999886
No 29
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=53.84 E-value=46 Score=28.91 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c-----eeeeceEEcCCcceEEEE--eeHH-HHhhccCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G-----TCLTVTEFGTQLEDFTVG--LSPE-TLRKTSLI 148 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G-----VcLTV~~i~~~~~~F~v~--lipE-TL~~T~L~ 148 (282)
.++|.++++...+.+.|+++.+..+ ...+|..+.+. | -.+|+.+...+ +.+++. ..|. ..-...|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGY-DFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcC-CCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCCCCcHhHHHH
Confidence 3567888876555778888765433 46888887753 2 34677666432 344444 3332 11123456
Q ss_pred CCCCCCeeeccCC
Q 023449 149 ELEPGSLVNLERA 161 (282)
Q Consensus 149 ~lkvGd~VNLE~a 161 (282)
++++||.|+++.+
T Consensus 80 ~l~~G~~v~i~gP 92 (218)
T cd06196 80 RLQPGDTLLIEDP 92 (218)
T ss_pred hCCCCCEEEEECC
Confidence 7899999999876
No 30
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=52.66 E-value=47 Score=30.44 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=46.2
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc-----ceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCe
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN-----GTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSL 155 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN-----GVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~ 155 (282)
.++|.++.+..+..+.|.+..+ + ..++|..+.|- .-.+|+.+..+ +.++|.+-..-.-...|.++++||.
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~-~--~~~pGQ~v~l~~~~~~~~pySi~~~~~--~~l~~~Vk~~G~~S~~L~~l~~Gd~ 81 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD-G--PVKPGQFFEVSLPKYGEAPISVSGIGE--GYIDLTIRRVGKVTDEVFTLKEGDN 81 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC-C--CCCCCcEEEEEecCCCccceecCCCCC--CeEEEEEEeCchhhHHHHcCCCCCE
Confidence 5677777766544555555433 1 35677766543 24455555444 5666666433222345667899999
Q ss_pred eeccCCC
Q 023449 156 VNLERAV 162 (282)
Q Consensus 156 VNLE~al 162 (282)
|+++-+.
T Consensus 82 v~i~gP~ 88 (261)
T TIGR02911 82 LFLRGPY 88 (261)
T ss_pred EEEecCC
Confidence 9998873
No 31
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=51.97 E-value=58 Score=29.33 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=46.4
Q ss_pred EEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c--eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCee
Q 023449 83 EIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G--TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLV 156 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G--VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~V 156 (282)
+|.++.+..++.+.++++.+.......+|..+.+- | ..+|+.+...+.+.+++.+-..-...-.|..+++||.|
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~v 81 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKGERIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKI 81 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCCCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCEe
Confidence 35555555444677888764322245677766652 2 46788776421146666664432222334678899998
Q ss_pred -eccCC
Q 023449 157 -NLERA 161 (282)
Q Consensus 157 -NLE~a 161 (282)
.++-+
T Consensus 82 ~~i~gP 87 (248)
T cd06219 82 HDVVGP 87 (248)
T ss_pred eeeecC
Confidence 68877
No 32
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=51.96 E-value=81 Score=27.96 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=51.9
Q ss_pred ccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEE----cce----eeeceEEcC-CcceEEEEeeHH--HHhhccC
Q 023449 79 EEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAV----NGT----CLTVTEFGT-QLEDFTVGLSPE--TLRKTSL 147 (282)
Q Consensus 79 d~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAV----NGV----cLTV~~i~~-~~~~F~v~lipE--TL~~T~L 147 (282)
...++|.++.+..++-+++.++.+......++|..|.+ +|- .+|+.+... +.+.+++.+--. =.-..-|
T Consensus 17 ~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G~~s~~l 96 (243)
T cd06216 17 ELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGLVSNWL 96 (243)
T ss_pred eeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCCcchhHH
Confidence 34677888887655577888886533335688998776 463 678876542 115666665432 2112223
Q ss_pred C-CCCCCCeeeccCC
Q 023449 148 I-ELEPGSLVNLERA 161 (282)
Q Consensus 148 ~-~lkvGd~VNLE~a 161 (282)
. .+++||.|-++-+
T Consensus 97 ~~~~~~Gd~v~i~gP 111 (243)
T cd06216 97 VNHLAPGDVVELSQP 111 (243)
T ss_pred HhcCCCCCEEEEECC
Confidence 2 5889999998865
No 33
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=51.86 E-value=46 Score=30.17 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=42.0
Q ss_pred eEEEec-CCEEEEEEEeCccc---ccceeeeecEEEc-----ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCE
Q 023449 184 VSMEPE-EDSLWIKVKTDKSL---LKYIVPKGFIAID-----GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQK 254 (282)
Q Consensus 184 ~~i~~~-~~~~~~~i~~p~~l---~~yiv~KGSIavD-----GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~ 254 (282)
.++++. ++-..+++++++.. .+|. +-.+|.|. .-.++|++..+.++.+++.+-....-...|..+++||.
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~-pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l~~G~~ 80 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFK-PGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGDT 80 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcC-CCCEEEEEcCCCCccceEecCCCCCCCeEEEEEEeCChhhHHHHcCCCCCE
Confidence 344444 33355666664431 2222 33333332 13677777653235677766655544445678899999
Q ss_pred eEEeh
Q 023449 255 VNLEV 259 (282)
Q Consensus 255 VNiE~ 259 (282)
|+|+-
T Consensus 81 v~i~g 85 (253)
T cd06221 81 VGLRG 85 (253)
T ss_pred EEEEC
Confidence 99975
No 34
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=50.42 E-value=66 Score=28.09 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=49.8
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc-cCCCccCCcEEEc-----c----eeeeceEEcCCcceEEEEe--eHHHHhhccCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVN-----G----TCLTVTEFGTQLEDFTVGL--SPETLRKTSLI 148 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~-l~~i~~ggSIAVN-----G----VcLTV~~i~~~~~~F~v~l--ipETL~~T~L~ 148 (282)
.++|.++++...+-++++++.+.. .....+|..|.+. | -.+|+.+...+.+.+++.+ .+.-....-|.
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~ 82 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYLH 82 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHHH
Confidence 367888887665567888886532 1357789988763 4 3578877643213455544 32211111233
Q ss_pred -CCCCCCeeeccCCC
Q 023449 149 -ELEPGSLVNLERAV 162 (282)
Q Consensus 149 -~lkvGd~VNLE~al 162 (282)
.+++||.|.++-+.
T Consensus 83 ~~l~~Gd~v~i~gP~ 97 (235)
T cd06217 83 DEVKVGDLLEVRGPI 97 (235)
T ss_pred hcCCCCCEEEEeCCc
Confidence 47899999998763
No 35
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=50.22 E-value=68 Score=28.13 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=48.3
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--cee----eeceEEcCCcceEEEEee--HHHHhhcc-C-CCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--GTC----LTVTEFGTQLEDFTVGLS--PETLRKTS-L-IEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--GVc----LTV~~i~~~~~~F~v~li--pETL~~T~-L-~~l 150 (282)
.++|.+++....+.+++++..+..+ ...+|..+.+. |.. +|+.+...+.+.+++.+- +.-. .|+ | ..+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~-~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~-~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPI-AYKAGQYAELTLPGLPAARSYSFANAPQGDGQLSFHIRKVPGGA-FSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCC-CcCCCCEEEEEeCCCCcccccccCCCCCCCCEEEEEEEECCCCc-chHHHHhcC
Confidence 4678888876555788888765433 46688887664 433 566655331145555443 2221 233 3 568
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++-+
T Consensus 80 ~~G~~v~i~gP 90 (227)
T cd06213 80 RTGERLTVRGP 90 (227)
T ss_pred CCCCEEEEeCC
Confidence 99999998865
No 36
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=48.82 E-value=50 Score=37.01 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=54.5
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c---------eeeeceEEcCCcc--eEEEEeeHHHHhhccC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G---------TCLTVTEFGTQLE--DFTVGLSPETLRKTSL 147 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G---------VcLTV~~i~~~~~--~F~v~lipETL~~T~L 147 (282)
.++|.+++...+.-+.|++.+|...+..++|..+.+- | ..|+|.+++...+ .|.+..+-. ----|
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGk--gT~~L 869 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGK--STSLC 869 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEECh--HHHHH
Confidence 5778888776655788999887666678899988774 2 3578888764223 344443333 22335
Q ss_pred CCCCCCCeeeccCCC
Q 023449 148 IELEPGSLVNLERAV 162 (282)
Q Consensus 148 ~~lkvGd~VNLE~al 162 (282)
.++++||.|++--++
T Consensus 870 s~l~~Gd~v~v~GPL 884 (1028)
T PRK06567 870 KTLSENEKVVLMGPT 884 (1028)
T ss_pred hcCCCCCEEEEEccc
Confidence 789999999988774
No 37
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=48.31 E-value=54 Score=29.24 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=42.5
Q ss_pred CcEEEEEecCcccCCCccCCcEEEc----c----eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCC
Q 023449 93 GGFVMKIRAKTVLEGVHLGDSIAVN----G----TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 93 ~~~~l~I~~~~~l~~i~~ggSIAVN----G----VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al 162 (282)
+-++|+++.+......++|..|.+. + -.+|+.+...+.+.+++.+-..-.....|.++++||.|++.-+.
T Consensus 10 ~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~gP~ 87 (243)
T cd06192 10 NLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPL 87 (243)
T ss_pred CEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEEccC
Confidence 3567777754322346778777664 1 45788777532256666654332222345678999999998663
No 38
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=48.25 E-value=47 Score=33.82 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=32.9
Q ss_pred ccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCC
Q 023449 109 HLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQP 164 (282)
Q Consensus 109 ~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~ 164 (282)
..+-.|.|||.-.......+ ...++. ..|+.||.|.|+.+|++
T Consensus 452 a~~~~i~vNG~~~~~~~~~~--gy~~i~-----------r~W~~gD~v~l~lpm~~ 494 (520)
T PF07944_consen 452 AKGATIRVNGEPVVDTAVPG--GYLTIE-----------REWKDGDVVELRLPMEV 494 (520)
T ss_pred CCCcEEEECCEeCCCCcCCC--CeEEEE-----------eeccCCcEEEEEecCee
Confidence 44578999999865555555 677776 45999999999999864
No 39
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=46.11 E-value=87 Score=27.47 Aligned_cols=78 Identities=10% Similarity=0.269 Sum_probs=46.8
Q ss_pred EEEEEEeCCCCcEEEEEecCcc-cCCCccCCcEEE----cce----eeeceEEcCCcceEEEEeeHH--HHhhcc-CC-C
Q 023449 83 EIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAV----NGT----CLTVTEFGTQLEDFTVGLSPE--TLRKTS-LI-E 149 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~-l~~i~~ggSIAV----NGV----cLTV~~i~~~~~~F~v~lipE--TL~~T~-L~-~ 149 (282)
+|.++++...+-++++++.+.. .-...+|..|.| +|. ++|+.+... .+.+++.+-.. -. .|+ |. .
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~-~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRVPGGR-VSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEECCCCc-cchHHHhc
Confidence 3566665544466777775422 113688998876 453 478877653 14566655332 11 233 33 6
Q ss_pred CCCCCeeeccCCC
Q 023449 150 LEPGSLVNLERAV 162 (282)
Q Consensus 150 lkvGd~VNLE~al 162 (282)
+++||.|+++-+.
T Consensus 80 ~~~Gd~v~i~gP~ 92 (231)
T cd06191 80 IQPGMTVEVMGPQ 92 (231)
T ss_pred CCCCCEEEEeCCc
Confidence 8999999998873
No 40
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=45.18 E-value=50 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=24.1
Q ss_pred cEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEE
Q 023449 94 GFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTV 135 (282)
Q Consensus 94 ~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v 135 (282)
...|.+..+.+.+ .+.|+.|.+||-.++|.+...+.+...+
T Consensus 53 ~~~L~v~~~d~~~-P~~gd~v~~dG~~y~V~~~~~~~G~~~I 93 (95)
T PF13856_consen 53 QPTLYVFSSDYPK-PRRGDRVVIDGESYTVTRFQEEDGMYVI 93 (95)
T ss_dssp -EEEEE--SS------TT-EEEETTEEEEEEEEEEETTEEEE
T ss_pred ceEEEEEcCCCCC-CCCCCEEEECCeEEEEeEEecCCCEEEE
Confidence 4667777555544 8899999999999999998653234444
No 41
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=45.05 E-value=45 Score=30.07 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=42.8
Q ss_pred EEeCCCCcEEEEEecCcccCCCccCCcEEEc--c-------eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeee
Q 023449 87 LGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G-------TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVN 157 (282)
Q Consensus 87 i~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G-------VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VN 157 (282)
++...++-++|+++.+.......+|..|.+- + =.+|+.+...+.+.+++.+-..-...--|.++++||.|.
T Consensus 4 ~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~ 83 (246)
T cd06218 4 NREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELD 83 (246)
T ss_pred eeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEE
Confidence 3333334667777755423346778865553 2 236777765211456665544322222446789999999
Q ss_pred ccCC
Q 023449 158 LERA 161 (282)
Q Consensus 158 LE~a 161 (282)
++-+
T Consensus 84 i~gP 87 (246)
T cd06218 84 VLGP 87 (246)
T ss_pred EEec
Confidence 9865
No 42
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=44.23 E-value=73 Score=27.87 Aligned_cols=79 Identities=11% Similarity=0.208 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c---eeeeceEEcCCcceEEEEeeHH---HHhhccCCCCCCC
Q 023449 82 GEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G---TCLTVTEFGTQLEDFTVGLSPE---TLRKTSLIELEPG 153 (282)
Q Consensus 82 G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G---VcLTV~~i~~~~~~F~v~lipE---TL~~T~L~~lkvG 153 (282)
++|.++++..++-+.+++..+.. -...+|..|.+. | -.+|+.+...+.+.+++.+... +...--+..+++|
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G 79 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAP-LDFLAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKEN 79 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCC-cccCCCCEEEEEcCCCCceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCC
Confidence 35777776655567788876542 245778876664 2 3567766543114566665432 2221122458999
Q ss_pred CeeeccCC
Q 023449 154 SLVNLERA 161 (282)
Q Consensus 154 d~VNLE~a 161 (282)
|.|.++-+
T Consensus 80 ~~v~i~gP 87 (224)
T cd06189 80 GLVRIEGP 87 (224)
T ss_pred CEEEEecC
Confidence 99998875
No 43
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=43.50 E-value=1.3e+02 Score=26.69 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=45.6
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE--cce----eeeeeeeeCCCcEEEEEe--ehhhhhhhcC-CCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI--DGT----SLTVVDVFDEEECFNFML--VAYTQQKVVI-PLK 249 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav--DGi----SLTI~~v~~~~~~f~V~L--IP~Tl~~T~l-~~~ 249 (282)
.++|.+++.. .+-+.++++.|.......-+--+|.| +|. .+||++....++.+++.+ .|.=.-..-| ..+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~~~l 87 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYEGTRAFSIASSPSDAGEIELHIRLVPGGIATTYVHKQL 87 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCCCccccccCCCCCCCCEEEEEEEECCCCcchhhHhhcC
Confidence 5788888866 66677889887653111223334433 333 368876643234455544 3322222334 368
Q ss_pred cCCCEeEEe
Q 023449 250 KVGQKVNLE 258 (282)
Q Consensus 250 kvGd~VNiE 258 (282)
++||.|+|+
T Consensus 88 ~~G~~v~i~ 96 (238)
T cd06211 88 KEGDELEIS 96 (238)
T ss_pred CCCCEEEEE
Confidence 999999987
No 44
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=43.44 E-value=1.2e+02 Score=26.53 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=47.9
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc-----cccceeeeecEE--Ecc----eeeeeeeeeCCCcEEEE--Eeehhhhhhhc
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS-----LLKYIVPKGFIA--IDG----TSLTVVDVFDEEECFNF--MLVAYTQQKVV 245 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~-----l~~yiv~KGSIa--vDG----iSLTI~~v~~~~~~f~V--~LIP~Tl~~T~ 245 (282)
.++|+++++. .+.+.+.++.|+. ..+| -+-.++. ++| -++||+.....++.+++ ...|.-.-.+-
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~ 81 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEF-VPGQFVEIEIPGTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFSTY 81 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCc-CCCCEEEEEcCCCccceecccCCCCCCCCEEEEEEEEcCCCccchh
Confidence 4678887755 6677788988753 1222 1222333 333 26788776432344554 44454443455
Q ss_pred CCC-CcCCCEeEEehhhhHH
Q 023449 246 IPL-KKVGQKVNLEVDILGK 264 (282)
Q Consensus 246 l~~-~kvGd~VNiE~Dil~k 264 (282)
|.. +++||.|+|+- ..++
T Consensus 82 l~~~~~~Gd~v~i~g-P~G~ 100 (236)
T cd06210 82 LETRAKVGQRLNLRG-PLGA 100 (236)
T ss_pred hhhCcCCCCEEEEec-Ccce
Confidence 555 89999999886 3343
No 45
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=43.39 E-value=97 Score=28.01 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=47.7
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEE----cce----eeeceEEcCCcceE--EEEeeHHHHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAV----NGT----CLTVTEFGTQLEDF--TVGLSPETLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAV----NGV----cLTV~~i~~~~~~F--~v~lipETL~~T~L~~l 150 (282)
.++|.++++..++-++++++.+. ....+|..+.| +|- ++++.+...+ +.+ .+-..|.=.-..-|.++
T Consensus 6 ~~~V~~i~~~t~~v~~l~l~~~~--~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~~S~~L~~l 82 (248)
T PRK10926 6 TGKVTKVQNWTDALFSLTVHAPV--DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGKLSPRLAAL 82 (248)
T ss_pred EEEEEEEEEcCCCeEEEEEeCCC--CCCCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEeCCCCcChHHHhC
Confidence 36788888765556778877542 24678888554 453 5676655321 333 44433322223345679
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.+..+
T Consensus 83 ~~Gd~v~i~gp 93 (248)
T PRK10926 83 KPGDEVQVVSE 93 (248)
T ss_pred CCCCEEEEecC
Confidence 99999999865
No 46
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=43.38 E-value=1.1e+02 Score=27.12 Aligned_cols=81 Identities=9% Similarity=0.186 Sum_probs=49.4
Q ss_pred EEEEEEEEeCCCCcEEEEEecCc-ccCCCccCCcEEEc--ce----eeeceEEcCCcceEEEEe--eHHHHhhccC-CCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKT-VLEGVHLGDSIAVN--GT----CLTVTEFGTQLEDFTVGL--SPETLRKTSL-IEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~-~l~~i~~ggSIAVN--GV----cLTV~~i~~~~~~F~v~l--ipETL~~T~L-~~l 150 (282)
.++|.+++...++-+.++++++. ......+|..+.+. |. .+|+.+...+.+.+++.+ .|.=.-..-| ..+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~~~l 87 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYEGTRAFSIASSPSDAGEIELHIRLVPGGIATTYVHKQL 87 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCCCccccccCCCCCCCCEEEEEEEECCCCcchhhHhhcC
Confidence 47888888765556778887643 22357889987774 32 367766542114555554 3222212224 368
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|+++-+
T Consensus 88 ~~G~~v~i~gP 98 (238)
T cd06211 88 KEGDELEISGP 98 (238)
T ss_pred CCCCEEEEECC
Confidence 99999999865
No 47
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=43.21 E-value=1.2e+02 Score=27.95 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=43.9
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE----cc--eeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCC
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI----DG--TSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQ 253 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav----DG--iSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd 253 (282)
++|+++++. .+.+.++++.|+....| -+--++.| +| ..++|++...+++.+++.+-..=.-...|..+++||
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~-~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd 80 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKA-KPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGD 80 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccC-CCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCC
Confidence 456766654 56777888876422121 11122221 12 578888875434567776655433334556789999
Q ss_pred Ee-EEe
Q 023449 254 KV-NLE 258 (282)
Q Consensus 254 ~V-NiE 258 (282)
.| .|.
T Consensus 81 ~v~~i~ 86 (281)
T PRK06222 81 SILDVV 86 (281)
T ss_pred EEeeEE
Confidence 98 555
No 48
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=42.55 E-value=64 Score=32.85 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=42.9
Q ss_pred ecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHH
Q 023449 188 PEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYV 266 (282)
Q Consensus 188 ~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv 266 (282)
.....+.+.+++|.. ..+-.|.|||......... +....|... |+.||.|.|+++|=.+.+
T Consensus 437 ~~~~~f~l~lRIP~W-----a~~~~i~vNG~~~~~~~~~--~gy~~i~r~-----------W~~gD~v~l~lpm~~r~~ 497 (520)
T PF07944_consen 437 DKPVPFTLRLRIPSW-----AKGATIRVNGEPVVDTAVP--GGYLTIERE-----------WKDGDVVELRLPMEVRLE 497 (520)
T ss_pred CCCccEEEEEEccCC-----CCCcEEEECCEeCCCCcCC--CCeEEEEee-----------ccCCcEEEEEecCeeEEE
Confidence 346677888999987 3445688999885444433 345655543 899999999999855544
No 49
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=42.35 E-value=1.1e+02 Score=26.73 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=44.4
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc-cccceeeeecEEE--cc----eeeeeeeeeCCCcEEEEEee--hhhhhhhcCC-C
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS-LLKYIVPKGFIAI--DG----TSLTVVDVFDEEECFNFMLV--AYTQQKVVIP-L 248 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~-l~~yiv~KGSIav--DG----iSLTI~~v~~~~~~f~V~LI--P~Tl~~T~l~-~ 248 (282)
.|+|.+++.. ++.+.++|+.|.. ..+| -+-.+|.| +| -++||++...+.+.+++.+- |.-.-..-|. .
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~-~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~~ 80 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKF-FAGQYVDITVPGTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDDG 80 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCc-CCCCeEEEEcCCCCcccccccCCCCCCCCEEEEEEEECCCCchhhHHhhc
Confidence 3677777755 6677788887542 2232 23333333 33 35788876532244555443 3222233354 4
Q ss_pred CcCCCEeEEeh
Q 023449 249 KKVGQKVNLEV 259 (282)
Q Consensus 249 ~kvGd~VNiE~ 259 (282)
+++||.|.|+-
T Consensus 81 l~~G~~v~i~g 91 (232)
T cd06212 81 LAVGDPVTVTG 91 (232)
T ss_pred CCCCCEEEEEc
Confidence 89999999875
No 50
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=41.23 E-value=75 Score=27.55 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=43.1
Q ss_pred EEEeCCCCcEEEEEecCcccCCCccCCcEEEcc-------eeeeceEEcCCcceEEEEeeHH--HHhhccCCC-CCCCCe
Q 023449 86 QLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNG-------TCLTVTEFGTQLEDFTVGLSPE--TLRKTSLIE-LEPGSL 155 (282)
Q Consensus 86 si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNG-------VcLTV~~i~~~~~~F~v~lipE--TL~~T~L~~-lkvGd~ 155 (282)
++.+..++-+.+++..+.. ....+|..|.+.- -.+|+.+...+.+.+++.+-.. =.-..-|.+ +++||.
T Consensus 3 ~~~~~~~~~~~~~l~~~~~-~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~~G~~ 81 (224)
T cd06187 3 SVERLTHDIAVVRLQLDQP-LPFWAGQYVNVTVPGRPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVGDR 81 (224)
T ss_pred eeeecCCCEEEEEEEeCCC-CCcCCCceEEEEcCCCCCcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCccCCE
Confidence 4444333456777775432 3467788877752 4567776543214555555432 222223444 899999
Q ss_pred eeccCC
Q 023449 156 VNLERA 161 (282)
Q Consensus 156 VNLE~a 161 (282)
|.++-+
T Consensus 82 v~i~gP 87 (224)
T cd06187 82 VRLSGP 87 (224)
T ss_pred EEEeCC
Confidence 999876
No 51
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=41.02 E-value=69 Score=29.00 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred CCccCCcEEEc----c-eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCC
Q 023449 107 GVHLGDSIAVN----G-TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 107 ~i~~ggSIAVN----G-VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~a 161 (282)
...+|..|.+. | -.+|+.+...+.+.+++.+-........|..+++||.|+++-+
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l~~G~~v~i~gP 86 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGDTVGLRGP 86 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCCCCeEEEEEEeCChhhHHHHcCCCCCEEEEECC
Confidence 46678887774 2 3566666542115677766554444445668899999999887
No 52
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=40.85 E-value=95 Score=28.44 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=43.7
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccccceeeeecEEEc-----ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCE
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAID-----GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQK 254 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIavD-----GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~ 254 (282)
++|+++++. .+.+.++++.|.. | -+-.+|.|. .-.++|++.. ++.|++.+...-.-...|..+++||.
T Consensus 10 ~~v~~i~~~t~~~~~~~l~~~~~---~-~pGQfi~l~~~~~~~~pySi~~~~--~~~~~~~Ik~~G~~S~~L~~l~~Gd~ 83 (263)
T PRK08221 10 YKILDITKHTDIEYTFRVEVDGP---V-KPGQFFEVSLPKVGEAPISVSDYG--DGYIDLTIRRVGKVTDEIFNLKEGDK 83 (263)
T ss_pred EEEEEEeccCCcEEEEEecCCCC---C-CCCceEEEEeCCCCcceeeccCCC--CCEEEEEEEeCCchhhHHHhCCCCCE
Confidence 678887755 5556667765521 1 122233332 2566777654 35677777655444456678999999
Q ss_pred eEEe
Q 023449 255 VNLE 258 (282)
Q Consensus 255 VNiE 258 (282)
|.|+
T Consensus 84 v~v~ 87 (263)
T PRK08221 84 LFLR 87 (263)
T ss_pred EEEE
Confidence 9886
No 53
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=40.32 E-value=1.4e+02 Score=26.10 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=44.2
Q ss_pred EEEEeEEEec-CCEEEEEEEeCccc-ccceeeeecEEE-----cc----eeeeeeeeeCCCcEEEEE--eehhhhhhhcC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSL-LKYIVPKGFIAI-----DG----TSLTVVDVFDEEECFNFM--LVAYTQQKVVI 246 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l-~~yiv~KGSIav-----DG----iSLTI~~v~~~~~~f~V~--LIP~Tl~~T~l 246 (282)
.++|+++++. .+-+.++|+.|+.. ..| -+-.+|.| +| -.+||.+.......+++. ..+.-.-..-|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~-~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPF-LAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCc-CCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHH
Confidence 3677877765 56778899887642 222 12233333 34 457888765323345444 44331112224
Q ss_pred C-CCcCCCEeEEeh
Q 023449 247 P-LKKVGQKVNLEV 259 (282)
Q Consensus 247 ~-~~kvGd~VNiE~ 259 (282)
. .+++||.|.|+-
T Consensus 82 ~~~l~~Gd~v~i~g 95 (235)
T cd06217 82 HDEVKVGDLLEVRG 95 (235)
T ss_pred HhcCCCCCEEEEeC
Confidence 3 478999999884
No 54
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=40.28 E-value=79 Score=27.98 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=46.6
Q ss_pred EEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc-----c--e--eeeceEEcCCcceEEEEe--eHHHHhhccCCCCCC
Q 023449 84 IEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN-----G--T--CLTVTEFGTQLEDFTVGL--SPETLRKTSLIELEP 152 (282)
Q Consensus 84 I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN-----G--V--cLTV~~i~~~~~~F~v~l--ipETL~~T~L~~lkv 152 (282)
|.++++..+.-++|+++.+. ....++|..|.+. | + .+|+.+...+ +.+++.+ .++-.-..-|.++++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~~l~~l~~ 79 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDI-PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTPRLFKLKP 79 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCC-CCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCCCchHHhcCCC
Confidence 45555544446677777654 2346788887763 3 2 6788876532 4555544 344433344668899
Q ss_pred CCeeecc-CC
Q 023449 153 GSLVNLE-RA 161 (282)
Q Consensus 153 Gd~VNLE-~a 161 (282)
||.|.++ -+
T Consensus 80 Gd~v~v~~gP 89 (241)
T cd06195 80 GDTIYVGKKP 89 (241)
T ss_pred CCEEEECcCC
Confidence 9999998 44
No 55
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=40.03 E-value=1.3e+02 Score=27.90 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=47.9
Q ss_pred cEEEEEEEEeCCCC--cEEEEEecCcccC--CCccCCcEEEc--c---eeeeceEEcCCcceEEEEeeHHHHhhccCCCC
Q 023449 80 EMGEIEQLGASNDG--GFVMKIRAKTVLE--GVHLGDSIAVN--G---TCLTVTEFGTQLEDFTVGLSPETLRKTSLIEL 150 (282)
Q Consensus 80 ~~G~I~si~~~~~~--~~~l~I~~~~~l~--~i~~ggSIAVN--G---VcLTV~~i~~~~~~F~v~lipETL~~T~L~~l 150 (282)
..++|.++++..++ .++|++..+...+ ...+|..+.+. | ..+++.+...+.+.+++.+-..-.-...|..+
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~pySias~p~~~~~l~l~Ik~~G~~S~~L~~l 85 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRRAGRVTTVIHRL 85 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCceeeEecCCCCCCCEEEEEEEeCChHHHHHHhC
Confidence 45778888876443 4455544332211 25788888763 2 35666554321145666664433333345678
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++-+
T Consensus 86 ~~Gd~v~v~gP 96 (289)
T PRK08345 86 KEGDIVGVRGP 96 (289)
T ss_pred CCCCEEEEeCC
Confidence 99999999876
No 56
>PRK08051 fre FMN reductase; Validated
Probab=39.89 E-value=90 Score=27.70 Aligned_cols=81 Identities=7% Similarity=0.103 Sum_probs=47.8
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c---eeeeceEEcCCcceE--EEEeeHHH-HhhccCCCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G---TCLTVTEFGTQLEDF--TVGLSPET-LRKTSLIELEP 152 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G---VcLTV~~i~~~~~~F--~v~lipET-L~~T~L~~lkv 152 (282)
.++|.++....++-+.|++..+..+ ...+|..+.+. + -.+|+.+...+.+.+ .+...+.- ....-+.++++
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~-~~~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~l~~ 82 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPF-SFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGASELNLYAMAVMERILK 82 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCC-ccCCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHHcCC
Confidence 4678888876655677787754322 46788887775 1 245665543111344 44443321 11122367899
Q ss_pred CCeeeccCCC
Q 023449 153 GSLVNLERAV 162 (282)
Q Consensus 153 Gd~VNLE~al 162 (282)
||.|.++-+.
T Consensus 83 G~~v~v~gP~ 92 (232)
T PRK08051 83 DGEIEVDIPH 92 (232)
T ss_pred CCEEEEEcCC
Confidence 9999999773
No 57
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=39.79 E-value=1e+02 Score=27.40 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=39.3
Q ss_pred cCCEEEEEEEeCcccccceeeeecEEEc--------ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEe
Q 023449 189 EEDSLWIKVKTDKSLLKYIVPKGFIAID--------GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 189 ~~~~~~~~i~~p~~l~~yiv~KGSIavD--------GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE 258 (282)
..+.+.++|+.|+....| -+-.+|.|. --.+||.+...+.+.+++.+-.+-....-|..+++||.|+|.
T Consensus 8 t~~~~~l~l~~~~~~~~~-~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~ 84 (243)
T cd06192 8 EPNLVLLTIKAPLAARLF-RPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVM 84 (243)
T ss_pred cCCEEEEEEEccchhhcC-CCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEE
Confidence 466677778776431111 111222221 256888887533456777665543333345678999999986
No 58
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=39.69 E-value=1.3e+02 Score=26.22 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=46.7
Q ss_pred EEEEEEeCCCCcEEEEEecCcc-cCCCccCCcEEEc----ce----eeeceEEcCCcceEEEEe--eHHHHhhccC-CCC
Q 023449 83 EIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVN----GT----CLTVTEFGTQLEDFTVGL--SPETLRKTSL-IEL 150 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~-l~~i~~ggSIAVN----GV----cLTV~~i~~~~~~F~v~l--ipETL~~T~L-~~l 150 (282)
+|.++.+..++-++|+++.+.. .....+|..+-+. |- -+|+.+...+.+.+++.+ .+.-.-.+-| ..+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 4566666554567788886532 1346788887654 42 567776643213455544 3322222335 368
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|+++-+
T Consensus 82 ~~G~~v~i~gP 92 (231)
T cd06215 82 KVGDELWASGP 92 (231)
T ss_pred CCCCEEEEEcC
Confidence 99999999865
No 59
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=39.56 E-value=50 Score=27.11 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred hccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeC
Q 023449 144 KTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTD 200 (282)
Q Consensus 144 ~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p 200 (282)
.+-|..+++||+|.|-.+..+.+-|==+..||- ||+|..++ |+++.+.+...
T Consensus 27 sr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~---TG~Vvg~~--g~ay~V~v~~G 78 (98)
T COG2139 27 SRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGK---TGTVVGVR--GRAYKVEVYDG 78 (98)
T ss_pred hhHHhhccCCCEEEEEeCcccccCCCCccccCc---ceEEEecc--CCEEEEEEecC
Confidence 356788999999998877766666766777876 77776553 67777666643
No 60
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=38.92 E-value=1.1e+02 Score=27.25 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=44.2
Q ss_pred EEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c---eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeee
Q 023449 83 EIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G---TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVN 157 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G---VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VN 157 (282)
+|.++++..++.++++++.+. ...+|..+.+. | -.+++.+.. +.+++.+-..-.-...|.++++||.|.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~---~~~pGQ~v~l~~~~~~~~~~Si~s~~---~~l~~~v~~~G~~s~~L~~l~~Gd~v~ 75 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWDF---DFKPGQFVMVWVPGVDEIPMSLSYID---GPNSITVKKVGEATSALHDLKEGDKLG 75 (233)
T ss_pred EEEEEEEEcCCEEEEEEecCC---CCCCCceEEEEeCCCCcceeEEecCC---CeEEEEEEecChHHHHHHhcCCCCEEE
Confidence 456666554446677777541 46677776653 2 455555443 355665544444445566789999999
Q ss_pred ccCC
Q 023449 158 LERA 161 (282)
Q Consensus 158 LE~a 161 (282)
+.-+
T Consensus 76 i~gP 79 (233)
T cd06220 76 IRGP 79 (233)
T ss_pred EECc
Confidence 8765
No 61
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=38.87 E-value=1.1e+02 Score=26.48 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=44.2
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEE--Ec--c-----eeeeeeeeeCCCcE--EEEEeehh-hhhhhcC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIA--ID--G-----TSLTVVDVFDEEEC--FNFMLVAY-TQQKVVI 246 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIa--vD--G-----iSLTI~~v~~~~~~--f~V~LIP~-Tl~~T~l 246 (282)
.++|+++++. .+.+.++++.|+.+ .| -+-.+|. ++ | -++||+...+ ++. |.|...|. ..-..-|
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~-~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~l~~~vk~~~~~g~~s~~l 78 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGY-DF-TPGQATEVAIDKPGWRDEKRPFTFTSLPE-DDVLEFVIKSYPDHDGVTEQL 78 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcC-CC-CCCCEEEEEeeCCCCCccccccccccCCC-CCeEEEEEEEcCCCCcHhHHH
Confidence 3567777765 66778888887643 22 2222333 22 2 4567877643 244 44444443 2223345
Q ss_pred CCCcCCCEeEEe
Q 023449 247 PLKKVGQKVNLE 258 (282)
Q Consensus 247 ~~~kvGd~VNiE 258 (282)
..+++||.|+++
T Consensus 79 ~~l~~G~~v~i~ 90 (218)
T cd06196 79 GRLQPGDTLLIE 90 (218)
T ss_pred HhCCCCCEEEEE
Confidence 678999999987
No 62
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=38.07 E-value=1.3e+02 Score=28.41 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc-cccceeeeecEEEc-----ceeeeeeeeeCCCcEEEEEe--ehhhhhhhcC-CCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS-LLKYIVPKGFIAID-----GTSLTVVDVFDEEECFNFML--VAYTQQKVVI-PLK 249 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~-l~~yiv~KGSIavD-----GiSLTI~~v~~~~~~f~V~L--IP~Tl~~T~l-~~~ 249 (282)
.++|+++++. .+.+.++|+.|+. ...| -+-.+|.|. --+++|++.....+.+++.+ .|.-.-..-| ..+
T Consensus 104 ~~~V~~~~~~~~d~~~l~l~~~~~~~~~~-~pGQfv~l~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l~~~l 182 (339)
T PRK07609 104 PCRVASLERVAGDVMRLKLRLPATERLQY-LAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGAL 182 (339)
T ss_pred EEEEEEEEcCCCcEEEEEEEcCCCCCCcc-CCCCeEEEECCCCceeeeecCCCCCCCCEEEEEEEecCCCccHHHHHHhc
Confidence 5788888865 6677899988742 1222 122333332 26778887653224555544 5543322234 578
Q ss_pred cCCCEeEEeh
Q 023449 250 KVGQKVNLEV 259 (282)
Q Consensus 250 kvGd~VNiE~ 259 (282)
++||.|.++-
T Consensus 183 ~~G~~v~v~g 192 (339)
T PRK07609 183 KERDILRIEG 192 (339)
T ss_pred cCCCEEEEEc
Confidence 9999998873
No 63
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=37.29 E-value=1.7e+02 Score=25.61 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=45.6
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE--cc----eeeeeeeeeCCCcEEEEEee--hhhhhhhc-C-CC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI--DG----TSLTVVDVFDEEECFNFMLV--AYTQQKVV-I-PL 248 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav--DG----iSLTI~~v~~~~~~f~V~LI--P~Tl~~T~-l-~~ 248 (282)
.|+|++++.. .+.+.++++.|+. ..|. +-.++.| +| -++||+......+.+++.+. |.=. -|+ | ..
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~-~~~~-pGQ~~~l~~~~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~-~s~~l~~~ 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRP-IAYK-AGQYAELTLPGLPAARSYSFANAPQGDGQLSFHIRKVPGGA-FSGWLFGA 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCC-CCcC-CCCEEEEEeCCCCcccccccCCCCCCCCEEEEEEEECCCCc-chHHHHhc
Confidence 4677777754 6788888887643 2322 2233333 33 34688775432345666443 3221 243 3 56
Q ss_pred CcCCCEeEEehhhhHH
Q 023449 249 KKVGQKVNLEVDILGK 264 (282)
Q Consensus 249 ~kvGd~VNiE~Dil~k 264 (282)
+++||.|.|+- ..+.
T Consensus 79 l~~G~~v~i~g-P~G~ 93 (227)
T cd06213 79 DRTGERLTVRG-PFGD 93 (227)
T ss_pred CCCCCEEEEeC-CCcc
Confidence 89999999883 4443
No 64
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=37.09 E-value=1.2e+02 Score=28.63 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=49.5
Q ss_pred ccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc---c--e--eeeceEEcCCcceEEEEee--HHHHhhccC-C
Q 023449 79 EEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN---G--T--CLTVTEFGTQLEDFTVGLS--PETLRKTSL-I 148 (282)
Q Consensus 79 d~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN---G--V--cLTV~~i~~~~~~F~v~li--pETL~~T~L-~ 148 (282)
...++|.++.+...+.+.|++..+... ..++|..+.|. | . ++|+.+...+.+.+++.+- |.=.-..-| .
T Consensus 9 ~~~~~V~~i~~~t~~v~~l~l~~~~~~-~f~pGQfv~l~~~~~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~ 87 (332)
T PRK10684 9 PNRMQVHSIVQETPDVWTISLICHDFY-PYRAGQYALVSIRNSAETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTR 87 (332)
T ss_pred ceeEEEEEEEccCCCeEEEEEcCCCCC-CcCCCCEEEEEecCCCEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHh
Confidence 346778888876555677777754433 36788876663 2 2 6777765421134555443 322222225 4
Q ss_pred CCCCCCeeeccCC
Q 023449 149 ELEPGSLVNLERA 161 (282)
Q Consensus 149 ~lkvGd~VNLE~a 161 (282)
++++||.|.+..+
T Consensus 88 ~l~~Gd~v~v~gP 100 (332)
T PRK10684 88 DVKRGDYLWLSDA 100 (332)
T ss_pred cCCCCCEEEEeCC
Confidence 7999999999765
No 65
>PRK05713 hypothetical protein; Provisional
Probab=36.83 E-value=1.2e+02 Score=28.36 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=45.1
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE---cc--eeeeeeeeeCCCcEEEEEe--ehhhhhhhcCCCCcCC
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI---DG--TSLTVVDVFDEEECFNFML--VAYTQQKVVIPLKKVG 252 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav---DG--iSLTI~~v~~~~~~f~V~L--IP~Tl~~T~l~~~kvG 252 (282)
++|++++.. ++-+.++++.++. .+|- +-.++.| ++ -+++|++...+.+.+++.+ .|.=.-...+..+++|
T Consensus 94 ~~V~~~~~~t~dv~~l~l~~~~~-~~~~-~GQfv~l~~~~~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l~~G 171 (312)
T PRK05713 94 ARVVALDWLGGDVLRLRLEPERP-LRYR-AGQHLVLWTAGGVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQVG 171 (312)
T ss_pred eEEEEEecCCCCEEEEEEccCCc-CCcC-CCCEEEEecCCCcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcCCCC
Confidence 888888865 6778888886542 2221 2223332 22 4778877643234455554 3543333456789999
Q ss_pred CEeEEe
Q 023449 253 QKVNLE 258 (282)
Q Consensus 253 d~VNiE 258 (282)
|.|+|+
T Consensus 172 d~v~l~ 177 (312)
T PRK05713 172 DLLRLG 177 (312)
T ss_pred CEEEEc
Confidence 999974
No 66
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=36.62 E-value=1.9e+02 Score=26.87 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=43.6
Q ss_pred EEEEEeEEEecCC-EEEEEEEe--Ccccccc-eeeeecEEE--c---ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCC
Q 023449 179 GTGVIVSMEPEED-SLWIKVKT--DKSLLKY-IVPKGFIAI--D---GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLK 249 (282)
Q Consensus 179 g~g~I~~i~~~~~-~~~~~i~~--p~~l~~y-iv~KGSIav--D---GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~ 249 (282)
..++|+++++... ...+.+++ |.....+ .-+-.+|.| . ...++|+.....+..+++.+-..-.-..-|..+
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~pySias~p~~~~~l~l~Ik~~G~~S~~L~~l 85 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRRAGRVTTVIHRL 85 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCceeeEecCCCCCCCEEEEEEEeCChHHHHHHhC
Confidence 3578888887643 23444443 3211011 112223333 1 246677665422356777776544344456678
Q ss_pred cCCCEeEEeh
Q 023449 250 KVGQKVNLEV 259 (282)
Q Consensus 250 kvGd~VNiE~ 259 (282)
++||.|.|+-
T Consensus 86 ~~Gd~v~v~g 95 (289)
T PRK08345 86 KEGDIVGVRG 95 (289)
T ss_pred CCCCEEEEeC
Confidence 9999998874
No 67
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=36.17 E-value=1.2e+02 Score=32.19 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=49.0
Q ss_pred EEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c--eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCee
Q 023449 83 EIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G--TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLV 156 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G--VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~V 156 (282)
+|.++++...+-+.|++.++......++|..+.|. | ..+++.+...+.+.+++.+-..=.-...|.++++||.|
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~v 82 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKGERIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYI 82 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCCCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCEe
Confidence 45555554444677888765433456788877663 2 58888887542245555543322223345689999999
Q ss_pred -eccCCC
Q 023449 157 -NLERAV 162 (282)
Q Consensus 157 -NLE~al 162 (282)
.+.-++
T Consensus 83 ~~v~GP~ 89 (752)
T PRK12778 83 TDVVGPL 89 (752)
T ss_pred CeEeCCC
Confidence 788773
No 68
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=35.73 E-value=18 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=13.4
Q ss_pred ccccccceeeeeeeccEE
Q 023449 65 FHNRMIRCLFTGIVEEMG 82 (282)
Q Consensus 65 ~~~~~gGHMFTGhId~~G 82 (282)
..--+|||+|.|+-...|
T Consensus 32 t~V~IgGHvFkGiLyDqG 49 (50)
T TIGR01624 32 ATVTIGGHVFKGFLHDQG 49 (50)
T ss_pred EEEEECceEEeeEEeccC
Confidence 344589999999976554
No 69
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=35.62 E-value=1.6e+02 Score=26.57 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=41.1
Q ss_pred EEeEEEec-CCEEEEEEEeCcccccceeeeecEEE----c--ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCE
Q 023449 182 VIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI----D--GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQK 254 (282)
Q Consensus 182 ~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav----D--GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~ 254 (282)
+|+++++. .+.+.++++.|+...+| -+-.++.| + -..+||++...+++.+++.+-+.-...-.|..+++||.
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~-~pGQf~~l~~~~~~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~ 80 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKA-KPGQFVIVRADEKGERIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDK 80 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccC-CCCcEEEEEcCCCCCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCE
Confidence 35555543 56777888876532121 11112222 1 24778887643235677666543332334567889999
Q ss_pred e-EEe
Q 023449 255 V-NLE 258 (282)
Q Consensus 255 V-NiE 258 (282)
| .++
T Consensus 81 v~~i~ 85 (248)
T cd06219 81 IHDVV 85 (248)
T ss_pred eeeee
Confidence 8 465
No 70
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=35.22 E-value=1.9e+02 Score=27.49 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=46.6
Q ss_pred EeEEEEEeEEEec-CCEEEEEEEeCcc--cccceeeeec--EEEcc----eeeeeeeeeCCCcE--EEEEeehhhhhhhc
Q 023449 177 VDGTGVIVSMEPE-EDSLWIKVKTDKS--LLKYIVPKGF--IAIDG----TSLTVVDVFDEEEC--FNFMLVAYTQQKVV 245 (282)
Q Consensus 177 VDg~g~I~~i~~~-~~~~~~~i~~p~~--l~~yiv~KGS--IavDG----iSLTI~~v~~~~~~--f~V~LIP~Tl~~T~ 245 (282)
-...++|.+++.. .+-+.++|+.|.. ...| -+-.+ |.++| -+++|+...+..+. |.|...|.-.-.+-
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~-~pGQ~v~l~~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDF-LPGQYARLQIPGTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCc-CCCCEEEEEeCCCCceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 4445888888866 5567788887632 1122 12222 33444 36777765322233 55555454332234
Q ss_pred C-CCCcCCCEeEEeh
Q 023449 246 I-PLKKVGQKVNLEV 259 (282)
Q Consensus 246 l-~~~kvGd~VNiE~ 259 (282)
| ..+++||.|.|+-
T Consensus 184 L~~~l~~G~~v~i~g 198 (340)
T PRK11872 184 LRERCQVGDEILFEA 198 (340)
T ss_pred HhhCCCCCCEEEEEc
Confidence 5 4699999999984
No 71
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=34.88 E-value=2.2e+02 Score=25.15 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred EEEeEEEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE----cc----eeeeeeeeeC-CCcEEEEEeehh--hhh
Q 023449 175 GHVDGTGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI----DG----TSLTVVDVFD-EEECFNFMLVAY--TQQ 242 (282)
Q Consensus 175 GHVDg~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav----DG----iSLTI~~v~~-~~~~f~V~LIP~--Tl~ 242 (282)
......++|+++++. .+.+.++++.|..+..| -+-.+|.| +| =.+||+...+ ..+.+++.+--+ =.-
T Consensus 14 ~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~-~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G~~ 92 (243)
T cd06216 14 SARELRARVVAVRPETADMVTLTLRPNRGWPGH-RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGLV 92 (243)
T ss_pred ccceeEEEEEEEEEcCCCcEEEEEecCCCCCCc-CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCCcc
Confidence 344457788888766 67788888876543222 22333322 34 3678877642 134555555433 222
Q ss_pred hhcCC-CCcCCCEeEEe
Q 023449 243 KVVIP-LKKVGQKVNLE 258 (282)
Q Consensus 243 ~T~l~-~~kvGd~VNiE 258 (282)
..-|. .+++||.|-|+
T Consensus 93 s~~l~~~~~~Gd~v~i~ 109 (243)
T cd06216 93 SNWLVNHLAPGDVVELS 109 (243)
T ss_pred hhHHHhcCCCCCEEEEE
Confidence 22333 57899998877
No 72
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=33.50 E-value=1.3e+02 Score=28.35 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=49.6
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc-cCCCccCCcEEEc---c--eeeeceEEcCCcceEEEEe--eHHHHhhccC-CCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVN---G--TCLTVTEFGTQLEDFTVGL--SPETLRKTSL-IELE 151 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~-l~~i~~ggSIAVN---G--VcLTV~~i~~~~~~F~v~l--ipETL~~T~L-~~lk 151 (282)
.++|.++++..++.+.|++..+.- .-...+|..|.+. | -.+|+.+...+.+.+++.+ .|.-.-...| ..++
T Consensus 104 ~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l~~~l~ 183 (339)
T PRK07609 104 PCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALK 183 (339)
T ss_pred EEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCCceeeeecCCCCCCCCEEEEEEEecCCCccHHHHHHhcc
Confidence 467888887655567788875421 1135678887774 2 5667776643114555554 4433222223 5799
Q ss_pred CCCeeeccCCC
Q 023449 152 PGSLVNLERAV 162 (282)
Q Consensus 152 vGd~VNLE~al 162 (282)
+||.|.++-+.
T Consensus 184 ~G~~v~v~gP~ 194 (339)
T PRK07609 184 ERDILRIEGPL 194 (339)
T ss_pred CCCEEEEEcCc
Confidence 99999998763
No 73
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=33.32 E-value=1.7e+02 Score=25.70 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=47.0
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc-cCCCccCCcEEEc--c----eeeeceEEcCCcceEEEEee--HHHHhhccCC-CC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVN--G----TCLTVTEFGTQLEDFTVGLS--PETLRKTSLI-EL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~-l~~i~~ggSIAVN--G----VcLTV~~i~~~~~~F~v~li--pETL~~T~L~-~l 150 (282)
.++|.+++...++.+++++..+.- .-...+|..|.+. | -.+|+.+...+.+.+++.+- +.-.-.+-|. .+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~~l 81 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDDGL 81 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCCcccccccCCCCCCCCEEEEEEEECCCCchhhHHhhcC
Confidence 357777777655567777774321 1135788887763 3 24677766431134444432 2222223344 48
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++-+
T Consensus 82 ~~G~~v~i~gP 92 (232)
T cd06212 82 AVGDPVTVTGP 92 (232)
T ss_pred CCCCEEEEEcC
Confidence 99999999875
No 74
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=32.87 E-value=2.7e+02 Score=24.98 Aligned_cols=75 Identities=9% Similarity=0.154 Sum_probs=43.8
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccccceeeeecEEEc--------ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcC
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAID--------GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKV 251 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIavD--------GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kv 251 (282)
++|.++++. .+.+.++++.| ...+| -+-.+|.|. --.+||+... ++.+++.+..+-.-...|..+++
T Consensus 7 ~~V~~~~~~t~d~~~l~l~~~-~~~~~-~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~G~~t~~l~~l~~ 82 (250)
T PRK00054 7 MKIVENKEIAPNIYTLVLDGE-KVFDM-KPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKVGEGTKKLSKLKE 82 (250)
T ss_pred EEEEEEEEecCCeEEEEEeCc-cccCC-CCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEcChHHHHHhcCCC
Confidence 566766644 66777888854 22222 122233332 1366777764 35677776654333344567899
Q ss_pred CCEeEEeh
Q 023449 252 GQKVNLEV 259 (282)
Q Consensus 252 Gd~VNiE~ 259 (282)
||.|.|+-
T Consensus 83 G~~v~i~g 90 (250)
T PRK00054 83 GDELDIRG 90 (250)
T ss_pred CCEEEEEc
Confidence 99998873
No 75
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=32.76 E-value=1.9e+02 Score=25.30 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=42.3
Q ss_pred EEeEEEec-CCEEEEEEEeCccc-ccceeeeecEEE----cce----eeeeeeeeCCCcEEEEEee--hhhhhhhcCC-C
Q 023449 182 VIVSMEPE-EDSLWIKVKTDKSL-LKYIVPKGFIAI----DGT----SLTVVDVFDEEECFNFMLV--AYTQQKVVIP-L 248 (282)
Q Consensus 182 ~I~~i~~~-~~~~~~~i~~p~~l-~~yiv~KGSIav----DGi----SLTI~~v~~~~~~f~V~LI--P~Tl~~T~l~-~ 248 (282)
+|.++++. .+-+.++|+.|... ..| -+-.+|.| +|- ++||++... .+.+++.+- |.=.-..-+. .
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~-~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGF-RPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCC-CCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEECCCCccchHHHhc
Confidence 35555544 66667888876542 233 34445544 342 478887653 344555554 3221122243 6
Q ss_pred CcCCCEeEEeh
Q 023449 249 KKVGQKVNLEV 259 (282)
Q Consensus 249 ~kvGd~VNiE~ 259 (282)
+++||.|+|+-
T Consensus 80 ~~~Gd~v~i~g 90 (231)
T cd06191 80 IQPGMTVEVMG 90 (231)
T ss_pred CCCCCEEEEeC
Confidence 89999999875
No 76
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=32.50 E-value=2.1e+02 Score=24.83 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=40.0
Q ss_pred EEeEEEec-CCEEEEEEEeCccc-ccceeeeecEEE----cc----eeeeeeeeeCCCcEEE--EEeehhhhhhhcC-CC
Q 023449 182 VIVSMEPE-EDSLWIKVKTDKSL-LKYIVPKGFIAI----DG----TSLTVVDVFDEEECFN--FMLVAYTQQKVVI-PL 248 (282)
Q Consensus 182 ~I~~i~~~-~~~~~~~i~~p~~l-~~yiv~KGSIav----DG----iSLTI~~v~~~~~~f~--V~LIP~Tl~~T~l-~~ 248 (282)
+|+++++. ++.+.+.|+.|... ..| .+-.++.| +| =.+||++..++.+.++ |...+.-.-.+-| ..
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~-~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAY-KPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCc-CCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc
Confidence 35555544 66677888887542 111 12223222 23 2678877643233344 4444433223335 36
Q ss_pred CcCCCEeEEe
Q 023449 249 KKVGQKVNLE 258 (282)
Q Consensus 249 ~kvGd~VNiE 258 (282)
+++||.|.|+
T Consensus 81 ~~~G~~v~i~ 90 (231)
T cd06215 81 LKVGDELWAS 90 (231)
T ss_pred CCCCCEEEEE
Confidence 8999999988
No 77
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=32.46 E-value=1.2e+02 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=27.9
Q ss_pred eeeeceEEcCCcceEEEEe--eHH-HHhhccCCCCCCCCeeeccCCC
Q 023449 119 TCLTVTEFGTQLEDFTVGL--SPE-TLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 119 VcLTV~~i~~~~~~F~v~l--ipE-TL~~T~L~~lkvGd~VNLE~al 162 (282)
=++|+.+.....+.+++++ .++ -.-..-+.++++||.|.+.-+.
T Consensus 65 R~YSi~~~~~~~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~ 111 (235)
T cd06193 65 RTYTVRRFDPEAGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPG 111 (235)
T ss_pred cccceeEEcCCCCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCC
Confidence 4678888753225666666 333 2222224679999999998883
No 78
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=32.41 E-value=1.7e+02 Score=25.54 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEEeEEEec-CCEEEEEEEeCcccccceeeeecEEEc-----ceeeeeeeeeCCCcEEEEEeehh---hhhhhcCCCCcC
Q 023449 181 GVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAID-----GTSLTVVDVFDEEECFNFMLVAY---TQQKVVIPLKKV 251 (282)
Q Consensus 181 g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIavD-----GiSLTI~~v~~~~~~f~V~LIP~---Tl~~T~l~~~kv 251 (282)
++|+++++. .+-+.++++.|. ..+| -+-.+|.|. --.+||+...+..+.+++.+.-+ ++.+--+..+++
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~-~~~~-~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~ 78 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA-PLDF-LAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKE 78 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC-Cccc-CCCCEEEEEcCCCCceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccC
Confidence 356666644 667778888765 2222 122233332 24678877653234566655533 332222345899
Q ss_pred CCEeEEeh
Q 023449 252 GQKVNLEV 259 (282)
Q Consensus 252 Gd~VNiE~ 259 (282)
||.|.|+-
T Consensus 79 G~~v~i~g 86 (224)
T cd06189 79 NGLVRIEG 86 (224)
T ss_pred CCEEEEec
Confidence 99998874
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.89 E-value=1.3e+02 Score=33.43 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=49.6
Q ss_pred EEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc---c---eeeeceEEcCCcceEEEEeeHHHHhhcc-C-CCCCCCC
Q 023449 83 EIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN---G---TCLTVTEFGTQLEDFTVGLSPETLRKTS-L-IELEPGS 154 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN---G---VcLTV~~i~~~~~~F~v~lipETL~~T~-L-~~lkvGd 154 (282)
+|.+.++..+.-+.|+|.+|.......+|..|.|- | .+||+.+.+...+.+++-+-..= .-|. | .++++||
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~errplSIa~~~~~~g~i~l~vk~vG-~~T~~L~~~lk~Gd 81 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGAERIPLTVADFDRKKGTITMVVQALG-KTTREMMTKFKAGD 81 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCCeeEEEEecCcCCCCCEEEEEEEecC-cHHHHHHhcCCCCC
Confidence 45665555444678888877655667888888763 2 68999877542144555544322 2333 3 6899999
Q ss_pred ee-eccCC
Q 023449 155 LV-NLERA 161 (282)
Q Consensus 155 ~V-NLE~a 161 (282)
.| .+.-+
T Consensus 82 ~l~~v~GP 89 (1006)
T PRK12775 82 TFEDFVGP 89 (1006)
T ss_pred EEeeeecC
Confidence 98 56655
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=31.86 E-value=1.7e+02 Score=33.09 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=45.7
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE-----------cceeeeeeeeeCCCcEEEEEeehhhhhhhcCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI-----------DGTSLTVVDVFDEEECFNFMLVAYTQQKVVIP 247 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav-----------DGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~ 247 (282)
+++|++.+.. .+-+.|+++.|.- .+-..+--++.| -.+.|+|.+++.+.+++++.+---=-..--|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~i-A~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLA-AKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcch-hhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHh
Confidence 5788887765 5577789988742 111123333333 22578999887544444444332222333468
Q ss_pred CCcCCCEeEE
Q 023449 248 LKKVGQKVNL 257 (282)
Q Consensus 248 ~~kvGd~VNi 257 (282)
.+++||.|+|
T Consensus 871 ~l~~Gd~v~v 880 (1028)
T PRK06567 871 TLSENEKVVL 880 (1028)
T ss_pred cCCCCCEEEE
Confidence 8999999876
No 81
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=31.64 E-value=1.2e+02 Score=31.42 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHh
Q 023449 107 GVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLR 143 (282)
Q Consensus 107 ~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~ 143 (282)
....|..|.++||+|++..--...+.|++. .|.||.
T Consensus 261 ~~~~~~~i~~~Gv~~~i~g~~~~gd~f~~~-~p~~~~ 296 (510)
T PRK12718 261 PYSEGSVIDMNGVSIKLSGQPEAGDVFTVE-TPKSWK 296 (510)
T ss_pred CCCCCCcceecceeEEeccccccccccccc-Cccccc
Confidence 467799999999999987552222678988 887776
No 82
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=31.34 E-value=2.4e+02 Score=25.02 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=45.4
Q ss_pred CccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEE
Q 023449 108 VHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSME 187 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~ 187 (282)
+..|+.|.-.-.-+++.+.+. -++.+.+-++ .++.+++|+.|.+..+- |....|.|..++... .
T Consensus 104 ~~~G~~v~~g~~l~~i~~~~~--~~i~~~v~~~-----~~~~i~~g~~v~i~~~~-------~~~~~g~v~~I~~~~--~ 167 (265)
T TIGR00999 104 VTLGDYVAPQAELFRVADLGA--VWVEAEVPAK-----DVSRIRKGSKATVLLEN-------GRPLPARVDYVGPEV--D 167 (265)
T ss_pred cCCCCEeCCCCceEEEEcCCc--EEEEEEECHH-----HHhhCCCCCEEEEEECC-------CCEEEEEEEEEcccc--C
Confidence 445655554445556666555 5666664443 34568899999988653 456778877776432 2
Q ss_pred ecCCEEEEEEEeC
Q 023449 188 PEEDSLWIKVKTD 200 (282)
Q Consensus 188 ~~~~~~~~~i~~p 200 (282)
.....+.+.+.++
T Consensus 168 ~~~~~~~v~~~~~ 180 (265)
T TIGR00999 168 GSSRTAKVRVLIK 180 (265)
T ss_pred CCCceEEEEEEEe
Confidence 2233445555544
No 83
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=29.92 E-value=2.2e+02 Score=24.82 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=47.5
Q ss_pred EEEEEEEEeCCCCcEEEEEecCc-ccCCCccCCcEEEc--ce----eeeceEEcCCcceEEEEee--HHHHhhccCCC-C
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKT-VLEGVHLGDSIAVN--GT----CLTVTEFGTQLEDFTVGLS--PETLRKTSLIE-L 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~-~l~~i~~ggSIAVN--GV----cLTV~~i~~~~~~F~v~li--pETL~~T~L~~-l 150 (282)
.++|.++......-++++++.+. ......+|..|.+. |. ++|+.+...+ +.+++.+- +.=.-..-|.+ +
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~s~~l~~~l 81 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTDETRSYSFSSAPGD-PRLEFLIRLLPGGAMSSYLRDRA 81 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCCcccccccccCCCC-CeEEEEEEEcCCCcchhhHHhcc
Confidence 46788888765556778887543 12246788887763 32 5577665432 45555443 22111222334 8
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++.+
T Consensus 82 ~~G~~v~v~gP 92 (228)
T cd06209 82 QPGDRLTLTGP 92 (228)
T ss_pred CCCCEEEEECC
Confidence 99999999876
No 84
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=29.47 E-value=1.7e+02 Score=26.41 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=25.6
Q ss_pred eeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEeh
Q 023449 219 SLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEV 259 (282)
Q Consensus 219 SLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~ 259 (282)
.+||++....++.+++.+..+-...--|..+++||.|.|+-
T Consensus 46 ~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~i~g 86 (246)
T cd06218 46 PISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLG 86 (246)
T ss_pred ceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEEEEe
Confidence 46777765324566666665432223446789999999873
No 85
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=29.45 E-value=60 Score=28.20 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHhhccC-CCCCCCC-eeeccCCC--CCCCccCCceEeEEEeEEEEEeEEEecCCE
Q 023449 140 ETLRKTSL-IELEPGS-LVNLERAV--QPTSRMGGHFVQGHVDGTGVIVSMEPEEDS 192 (282)
Q Consensus 140 ETL~~T~L-~~lkvGd-~VNLE~al--~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~ 192 (282)
++++...| |.+...| .++|=.++ .-|.-+|||++.|-|+-+++|.=.+-.+..
T Consensus 68 e~~EvlSL~G~i~~~~p~~HlHa~l~~~~G~~~GGHL~~~~V~~t~Ev~I~el~~~~ 124 (141)
T COG1661 68 EPLEVLSLLGNIALDDPFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIRELPGEL 124 (141)
T ss_pred CcEEEEEecceeecCCCcEEEEEEEecCCCcEEeeeecccEEeEEEEEEEEEccccc
Confidence 44554333 4455555 44444433 578889999999999999999766655554
No 86
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=28.74 E-value=1.3e+02 Score=26.41 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=42.1
Q ss_pred EEeCCCCcEEEEEecCcccCCCccCCcEEEc--ce----eeeceEEcCCcceEEEEee--HHHHhhccCC-CCCCCCeee
Q 023449 87 LGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--GT----CLTVTEFGTQLEDFTVGLS--PETLRKTSLI-ELEPGSLVN 157 (282)
Q Consensus 87 i~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--GV----cLTV~~i~~~~~~F~v~li--pETL~~T~L~-~lkvGd~VN 157 (282)
+++..++-+.|+++.+..+ ...+|..|.+. |. ++|+.+...+.+.|++.+- +.-.-...|. .+++||.|.
T Consensus 4 ~~~~t~~~~~~~l~~~~~~-~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~~g~~v~ 82 (232)
T cd06190 4 VRELTHDVAEFRFALDGPA-DFLPGQYALLALPGVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEPGDELE 82 (232)
T ss_pred eEEcCCCEEEEEEEcCCcc-ccCCCCEEEEECCCCCcccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCCCCCEEE
Confidence 3433333567777754323 47788887773 43 6677766432145666553 2222223333 468999999
Q ss_pred ccCC
Q 023449 158 LERA 161 (282)
Q Consensus 158 LE~a 161 (282)
++-+
T Consensus 83 v~gP 86 (232)
T cd06190 83 LDGP 86 (232)
T ss_pred EECC
Confidence 9865
No 87
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=28.65 E-value=71 Score=26.25 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=17.8
Q ss_pred CEEEEEEEeCcccccceeeeecEEEcceeee
Q 023449 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLT 221 (282)
Q Consensus 191 ~~~~~~i~~p~~l~~yiv~KGSIavDGiSLT 221 (282)
+.+++.|+.-.. . ...|.||||.|+|+
T Consensus 127 ~~fqi~fe~~~~--~--~~~g~IAIDdI~l~ 153 (157)
T cd06263 127 KPFQVVFEGVRG--S--GSRGDIALDDISLS 153 (157)
T ss_pred CceEEEEEEEEC--C--CccccEEEeEEEEe
Confidence 445555554322 1 27899999999997
No 88
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.36 E-value=1.8e+02 Score=32.22 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c--eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G--TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGS 154 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G--VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd 154 (282)
.++|.++++..++.+.|++.++.......+|..+.|- | ..+++.+.......+++.+-..=....-+.++++||
T Consensus 650 ~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~lk~Gd 729 (944)
T PRK12779 650 PQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKGELIPLTLADWDAEKGTIDLVVQGMGTSSLEINRMAIGD 729 (944)
T ss_pred EEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCCCEEeEEccCCCCCCCEEEEEEEeeccHHHHHhcCCCcC
Confidence 4677888776555678888765433457788887664 2 467777664311445555432211112357899999
Q ss_pred ee-eccCCC
Q 023449 155 LV-NLERAV 162 (282)
Q Consensus 155 ~V-NLE~al 162 (282)
.| +|.-++
T Consensus 730 ~l~~I~GPl 738 (944)
T PRK12779 730 AFSGIAGPL 738 (944)
T ss_pred EEeeeecCC
Confidence 99 588874
No 89
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=28.20 E-value=2.3e+02 Score=27.24 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=47.3
Q ss_pred CccCCceEeEEEeEEEEEeEEEec-CCEEEEEEEeCcc-cccceeeeecEE--Ec-c--------eeeeeeeeeCCCcEE
Q 023449 166 SRMGGHFVQGHVDGTGVIVSMEPE-EDSLWIKVKTDKS-LLKYIVPKGFIA--ID-G--------TSLTVVDVFDEEECF 232 (282)
Q Consensus 166 drlGGH~V~GHVDg~g~I~~i~~~-~~~~~~~i~~p~~-l~~yiv~KGSIa--vD-G--------iSLTI~~v~~~~~~f 232 (282)
.+.||=+-.+. .-++|.+++++ .+...++|++|.. ...|- +--++. +. | =+.|++...++.+.|
T Consensus 42 ~~~~~~~~~~~--~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~-pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~l 118 (325)
T PTZ00274 42 PRPGRVFSQRY--EPYQLGEVIPITHDTALFRFLLHSEEEFNLK-PCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYF 118 (325)
T ss_pred cccCCcCCCce--EEEEEEEEEEeCCCeEEEEEeCCcccccCCC-CccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeE
Confidence 44555333333 36778887765 7778889988642 11221 111121 11 2 145555543222344
Q ss_pred EEE--eehhhhhhhcCCCCcCCCEeEEe
Q 023449 233 NFM--LVAYTQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 233 ~V~--LIP~Tl~~T~l~~~kvGd~VNiE 258 (282)
++. ..|.=.-..-|..+|+||.|++.
T Consensus 119 e~~IK~~~~G~~S~~L~~lk~Gd~v~v~ 146 (325)
T PTZ00274 119 DIIVKRKKDGLMTNHLFGMHVGDKLLFR 146 (325)
T ss_pred EEEEEEcCCCcccHHHhcCCCCCEEEEe
Confidence 444 44443333445579999999996
No 90
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=28.08 E-value=2.4e+02 Score=24.67 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=48.7
Q ss_pred EEEEEEEEeCCCCcEEEEEecCccc---CCCccCCcEEEc----ce----eeeceEEcCCcceEEEEee--HHHHhhccC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVL---EGVHLGDSIAVN----GT----CLTVTEFGTQLEDFTVGLS--PETLRKTSL 147 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l---~~i~~ggSIAVN----GV----cLTV~~i~~~~~~F~v~li--pETL~~T~L 147 (282)
..+|.++++..++-++++++.+.-+ -...+|..|.|. |. .+|+.+..++ +.+++.+- +.=.-.+-+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~-~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD-DELRITVKRVPGGRFSNWA 81 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC-CcEEEEEEEcCCCccchhH
Confidence 3567888876555677888765322 246789887765 42 4677665432 34555443 222222345
Q ss_pred -CCCCCCCeeeccCC
Q 023449 148 -IELEPGSLVNLERA 161 (282)
Q Consensus 148 -~~lkvGd~VNLE~a 161 (282)
.++++||.|.++.+
T Consensus 82 ~~~~~~G~~v~i~gP 96 (241)
T cd06214 82 NDELKAGDTLEVMPP 96 (241)
T ss_pred HhccCCCCEEEEeCC
Confidence 37899999999975
No 91
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=26.96 E-value=2.9e+02 Score=24.09 Aligned_cols=83 Identities=13% Similarity=0.325 Sum_probs=45.6
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc-cccceeeeecEE--Ecc----eeeeeeeeeCCCcEEEEEee--hhhhhhhcCCC-
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS-LLKYIVPKGFIA--IDG----TSLTVVDVFDEEECFNFMLV--AYTQQKVVIPL- 248 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~-l~~yiv~KGSIa--vDG----iSLTI~~v~~~~~~f~V~LI--P~Tl~~T~l~~- 248 (282)
.++|.+++.. .+-+.++++.|.. ..+| -+-.+|. ++| -++||+...+ ++.+++.+- |.=.-..-|..
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~-~pGQ~v~l~~~~~~~~r~ysi~s~~~-~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAF-LPGQYVNLQVPGTDETRSYSFSSAPG-DPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCcc-CCCCEEEEEeCCCCcccccccccCCC-CCeEEEEEEEcCCCcchhhHHhc
Confidence 4678887755 7778888988762 1122 1222222 233 2668876543 245555543 32112223444
Q ss_pred CcCCCEeEEehhhhHHH
Q 023449 249 KKVGQKVNLEVDILGKY 265 (282)
Q Consensus 249 ~kvGd~VNiE~Dil~ky 265 (282)
+++||.|.|+- ..+++
T Consensus 81 l~~G~~v~v~g-P~G~~ 96 (228)
T cd06209 81 AQPGDRLTLTG-PLGSF 96 (228)
T ss_pred cCCCCEEEEEC-Ccccc
Confidence 89999999874 34443
No 92
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=26.80 E-value=2.1e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=25.7
Q ss_pred eeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEeh
Q 023449 218 TSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEV 259 (282)
Q Consensus 218 iSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~ 259 (282)
-.++|++.. ++.+++.+-..=.-...|..+++||.|.|+-
T Consensus 47 ~pySi~~~~--~~~l~~~Vk~~G~~S~~L~~l~~Gd~v~i~g 86 (261)
T TIGR02911 47 APISVSGIG--EGYIDLTIRRVGKVTDEVFTLKEGDNLFLRG 86 (261)
T ss_pred cceecCCCC--CCeEEEEEEeCchhhHHHHcCCCCCEEEEec
Confidence 466666643 3456666654333335666789999998864
No 93
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=26.41 E-value=3.1e+02 Score=24.24 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=47.0
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc--cCCCccCCcEEEc----c--ee----eeceEEcCCcceEEEEeeHH--HHhhcc
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV--LEGVHLGDSIAVN----G--TC----LTVTEFGTQLEDFTVGLSPE--TLRKTS 146 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~--l~~i~~ggSIAVN----G--Vc----LTV~~i~~~~~~F~v~lipE--TL~~T~ 146 (282)
..+|.++.+...+-++|+++.+.. +....+|..|.+- | .. +|+.+...+ +.+++.+-.. -.-.+-
T Consensus 8 ~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~G~~s~~ 86 (247)
T cd06184 8 PFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKREPGGLVSNY 86 (247)
T ss_pred EEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEcCCCcchHH
Confidence 346777776554567777775432 1357788877654 3 11 677766432 3556654321 222222
Q ss_pred CCC-CCCCCeeeccCC
Q 023449 147 LIE-LEPGSLVNLERA 161 (282)
Q Consensus 147 L~~-lkvGd~VNLE~a 161 (282)
|.+ +++||.|.++-+
T Consensus 87 l~~~~~~Gd~v~i~gP 102 (247)
T cd06184 87 LHDNVKVGDVLEVSAP 102 (247)
T ss_pred HHhcCCCCCEEEEEcC
Confidence 444 899999999865
No 94
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=26.11 E-value=1.6e+02 Score=28.86 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEE
Q 023449 107 GVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTG 181 (282)
Q Consensus 107 ~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g 181 (282)
.+.+|+.|.-.---+|+.+.+. -|..+++ | .+.++.+++|+.|.+-.+.-. +++...|+|+.+.
T Consensus 230 ~v~~G~~V~~g~pl~~Iv~~~~--l~V~a~v-~----E~~l~~v~~Gq~V~I~~da~p----~~~~~~G~V~~I~ 293 (390)
T PRK15136 230 SVQVGAQISPTTPLMAVVPATN--LWVDANF-K----ETQLANMRIGQPATITSDIYG----DDVVYTGKVVGLD 293 (390)
T ss_pred ecCCCCEeCCCCeEEEEEeCCc--EEEEEec-C----HHHHhcCCCCCEEEEEEecCC----CCceEEEEEEEEC
Confidence 3566766665556667777665 5666664 3 455678999999999766432 2467888888774
No 95
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=25.67 E-value=31 Score=30.45 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.0
Q ss_pred ccccccceeeeeeeccEE
Q 023449 65 FHNRMIRCLFTGIVEEMG 82 (282)
Q Consensus 65 ~~~~~gGHMFTGhId~~G 82 (282)
..-.+|||+|.|+-...|
T Consensus 133 TaV~IGGHVFKGiLYDqG 150 (154)
T PF05142_consen 133 TAVNIGGHVFKGILYDQG 150 (154)
T ss_pred EeEEECCEEeeeeeeccC
Confidence 344589999999987665
No 96
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=25.52 E-value=2.4e+02 Score=24.34 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=37.1
Q ss_pred cCCEEEEEEEeCcccccceeeeecEEEc--c-----eeeeeeeeeCCCcEEEEEeehh--hhhhhcCCC-CcCCCEeEEe
Q 023449 189 EEDSLWIKVKTDKSLLKYIVPKGFIAID--G-----TSLTVVDVFDEEECFNFMLVAY--TQQKVVIPL-KKVGQKVNLE 258 (282)
Q Consensus 189 ~~~~~~~~i~~p~~l~~yiv~KGSIavD--G-----iSLTI~~v~~~~~~f~V~LIP~--Tl~~T~l~~-~kvGd~VNiE 258 (282)
.++.+.++|+.|.. ..| -+-.+|.|. + -++||.......+.+++.+.-. =.-..-|.. +++||.|.|+
T Consensus 8 ~~~~~~~~l~~~~~-~~~-~pGq~i~l~~~~~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~~G~~v~i~ 85 (224)
T cd06187 8 THDIAVVRLQLDQP-LPF-WAGQYVNVTVPGRPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVGDRVRLS 85 (224)
T ss_pred CCCEEEEEEEeCCC-CCc-CCCceEEEEcCCCCCcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCccCCEEEEe
Confidence 36667777776653 122 123343333 1 4567877643234566665532 222223444 8999999987
No 97
>PRK08051 fre FMN reductase; Validated
Probab=25.33 E-value=2.3e+02 Score=25.05 Aligned_cols=78 Identities=5% Similarity=0.151 Sum_probs=41.9
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEEc-----ceeeeeeeeeCCCcEE--EEEeehhh-hhhhcCCCCc
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAID-----GTSLTVVDVFDEEECF--NFMLVAYT-QQKVVIPLKK 250 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIavD-----GiSLTI~~v~~~~~~f--~V~LIP~T-l~~T~l~~~k 250 (282)
.++|.+++.. .+.+.++++.++.+ +| -+-.++.|. --.++|++....++.+ .|...|.- ....-+..++
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~-~~-~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~l~ 81 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPF-SF-RAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGASELNLYAMAVMERIL 81 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCC-cc-CCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHHcC
Confidence 4677777755 56677788765432 22 122233332 2457777654223344 44444421 1122246789
Q ss_pred CCCEeEEeh
Q 023449 251 VGQKVNLEV 259 (282)
Q Consensus 251 vGd~VNiE~ 259 (282)
+||.|.|+.
T Consensus 82 ~G~~v~v~g 90 (232)
T PRK08051 82 KDGEIEVDI 90 (232)
T ss_pred CCCEEEEEc
Confidence 999999984
No 98
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=24.80 E-value=1.3e+02 Score=22.71 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=39.0
Q ss_pred EEEEeCcccccceeeeecEEEcceeeee-eeeeC-CCcEEEEEeehhhhhhhcCCCCcCCCEe
Q 023449 195 IKVKTDKSLLKYIVPKGFIAIDGTSLTV-VDVFD-EEECFNFMLVAYTQQKVVIPLKKVGQKV 255 (282)
Q Consensus 195 ~~i~~p~~l~~yiv~KGSIavDGiSLTI-~~v~~-~~~~f~V~LIP~Tl~~T~l~~~kvGd~V 255 (282)
..+.+|+.+...+..|.|.+-.|+.+.. .-++. -...+.+.+.-++-..-. +++|+++
T Consensus 28 ~~i~~p~~~~~~i~~RSs~~~~Gi~v~~~g~iD~gy~G~l~v~l~N~~~~~~~---i~~G~~i 87 (92)
T cd07557 28 EAIELPEGYVGLVFPRSSLARKGITVHNAGVIDPGYRGEITLELYNLGPEPVV---IKKGDRI 87 (92)
T ss_pred EEEEcCCCeEEEEEcCchhhcCCEEecCCcccCCCCcceEEEEEEECCCCCEE---ECCCCEE
Confidence 4567899999999999999999999865 33331 123577777755433222 4466654
No 99
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=24.79 E-value=3.9e+02 Score=25.02 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred EeEEEeEEEEEeEEEec-CCEEEEEEEeC-cccccceeeeecEEEc----------cee--eeeeeeeCCCcEEEEEeeh
Q 023449 173 VQGHVDGTGVIVSMEPE-EDSLWIKVKTD-KSLLKYIVPKGFIAID----------GTS--LTVVDVFDEEECFNFMLVA 238 (282)
Q Consensus 173 V~GHVDg~g~I~~i~~~-~~~~~~~i~~p-~~l~~yiv~KGSIavD----------GiS--LTI~~v~~~~~~f~V~LIP 238 (282)
+..+.---.+|+++++. .+.+.++|+.+ ++-..-.-+-.+|.|. .+. +|+.....+++.+++.+--
T Consensus 28 ~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~ 107 (300)
T PTZ00319 28 LDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKV 107 (300)
T ss_pred cCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEE
Q ss_pred h-----------hhhhhcCCCCcCCCEeEEe
Q 023449 239 Y-----------TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 239 ~-----------Tl~~T~l~~~kvGd~VNiE 258 (282)
+ =.-..-|..+++||.|.|+
T Consensus 108 ~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~ 138 (300)
T PTZ00319 108 YFKGVHPSFPNGGRLSQHLYHMKLGDKIEMR 138 (300)
T ss_pred eccCCCCCCCCCCChhhhhhcCCCCCEEEEE
No 100
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.56 E-value=13 Score=33.74 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=32.5
Q ss_pred CcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCC
Q 023449 102 KTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 102 ~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~a 161 (282)
...++.+..+.-+||||+-|-.-+-.+ ||+.+-+-+|.+++...+...||.
T Consensus 72 eR~lqg~~lksatAiNGTgLpcDds~G---------Ip~AIF~gTL~nl~e~nr~kFerr 122 (214)
T COG2830 72 ERVLQGIRLKSATAINGTGLPCDDSFG---------IPPAIFKGTLENLTENNRLKFERR 122 (214)
T ss_pred HHHHhhccccceeeecCCCCCccccCC---------CCHHHHHHHHhccchhhHHHHHHH
Confidence 346778999999999998776543222 456655555665555444444444
No 101
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=24.03 E-value=4.8e+02 Score=24.46 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=44.7
Q ss_pred EEEEeEEEec------CCEEEEEEEeCcccccceeeeecEEE--c-------c-----eeeeeeeeeCC---C---cEEE
Q 023449 180 TGVIVSMEPE------EDSLWIKVKTDKSLLKYIVPKGFIAI--D-------G-----TSLTVVDVFDE---E---ECFN 233 (282)
Q Consensus 180 ~g~I~~i~~~------~~~~~~~i~~p~~l~~yiv~KGSIav--D-------G-----iSLTI~~v~~~---~---~~f~ 233 (282)
.++|++++.. .+.+.+.++.|..+ +| .+-.++.| + | =+++|+..... . -.|.
T Consensus 26 ~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~-~f-~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~ 103 (307)
T PLN03116 26 TATIVSVERIVGPKAPGETCHIVIDHGGNV-PY-WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLC 103 (307)
T ss_pred EEEEEeeEEcccCCCCCceEEEEEecCCCC-ce-ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEE
Confidence 5788888865 47888888877543 44 24445544 2 2 34666654310 0 1344
Q ss_pred EEee-------------hhhhhhhcCCCCcCCCEeEEe
Q 023449 234 FMLV-------------AYTQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 234 V~LI-------------P~Tl~~T~l~~~kvGd~VNiE 258 (282)
|-.. |.=+-..-|..+++||.|+|.
T Consensus 104 Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 141 (307)
T PLN03116 104 VRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQIT 141 (307)
T ss_pred EEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEE
Confidence 4444 222223345568999999987
No 102
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.92 E-value=3e+02 Score=26.10 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=35.5
Q ss_pred hccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEec--CCEEEEEEEeCc
Q 023449 144 KTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPE--EDSLWIKVKTDK 201 (282)
Q Consensus 144 ~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~--~~~~~~~i~~p~ 201 (282)
.+.++.+++|+.|.+..+-..+.++| .+.|.|..++.-..-.+. +..+.+++.+++
T Consensus 318 ~~~~~~i~~G~~v~v~~~~~~~~~~~--~~~g~V~~i~~~~~~~~~~~~~~~~v~i~l~~ 375 (423)
T TIGR01843 318 PKDIGFVHVGQPAEIKFSAFPYRRYG--ILNGKVKSISPDTFTDERGGGPYYRVRISIDQ 375 (423)
T ss_pred hhhhhhhCCCCceEEEEecCCCcccC--CccEEEEEECCCcccCccCCcceEEEEEEECH
Confidence 45678899999999988766666665 356777766643222222 233556666664
No 103
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=23.91 E-value=2.8e+02 Score=27.52 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=45.0
Q ss_pred EEEEEEEeCCC-----CcEEEEEecCcccCCCccCCcEEEc-------ce-----eeeceEEcCC----cc--eEEEEee
Q 023449 82 GEIEQLGASND-----GGFVMKIRAKTVLEGVHLGDSIAVN-------GT-----CLTVTEFGTQ----LE--DFTVGLS 138 (282)
Q Consensus 82 G~I~si~~~~~-----~~~~l~I~~~~~l~~i~~ggSIAVN-------GV-----cLTV~~i~~~----~~--~F~v~li 138 (282)
++|.+.++..+ .-++|+++.+...-...+|.+|.|- |- +++|.+.... .+ .|.|-..
T Consensus 145 a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v 224 (411)
T TIGR03224 145 ATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRV 224 (411)
T ss_pred EEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEE
Confidence 67776666521 3566777754322346789998872 21 5666654210 01 3444444
Q ss_pred HH--------HHhhccCCCCCCCCeeeccCC
Q 023449 139 PE--------TLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 139 pE--------TL~~T~L~~lkvGd~VNLE~a 161 (282)
++ =.-..-|..+++||.|.+.-+
T Consensus 225 ~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP 255 (411)
T TIGR03224 225 TTDHQGNAVRGVASNYLCDLKKGDKVQVIGP 255 (411)
T ss_pred EecCCCCcCcccchhHHhcCCCcCEEEEEec
Confidence 31 122334567999999999876
No 104
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=23.74 E-value=4.5e+02 Score=22.73 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcc
Q 023449 149 ELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDG 217 (282)
Q Consensus 149 ~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDG 217 (282)
.+..||.|-++... +.-.|.+|--++|+-..+......++.+++. ...+.+....+++..+.|=|
T Consensus 125 ~i~~Gd~v~v~~~~---~~~~G~ivvv~~~~~~~vKrl~~~~~~i~L~-s~N~~y~~i~~~~~~~~IiG 189 (199)
T TIGR00498 125 GICDGDLLIVRSQK---DARNGEIVAAMIDGEVTVKRFYKDGTKVELK-PENPEFDPIVLNAEDVTILG 189 (199)
T ss_pred CCCCCCEEEEecCC---CCCCCCEEEEEECCEEEEEEEEEECCEEEEE-cCCCCCcCCcCCCCcEEEEE
Confidence 46789999999764 3346888888889888888888777765542 23344555555554555555
No 105
>PRK09961 exoaminopeptidase; Provisional
Probab=23.65 E-value=2.5e+02 Score=27.17 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=53.8
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEec-CcccCCCccCCcEEE---c-----ceeeeceEEcCCcceEEEEeeHHHHh
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRA-KTVLEGVHLGDSIAV---N-----GTCLTVTEFGTQLEDFTVGLSPETLR 143 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~-~~~l~~i~~ggSIAV---N-----GVcLTV~~i~~~~~~F~v~lipETL~ 143 (282)
|+.||.|++|-++.--.. ++. |++.+ -.+.+...+|..+.| | ||= +-.+-..+.+.+.+|+=-.+-+
T Consensus 58 ~l~aHmDevg~~V~~I~~-~G~--l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi-~~~~~~~~~~~l~iDiG~~s~e 133 (344)
T PRK09961 58 MICAHMDEVGFMVRSISR-EGA--IDVLPVGNVRMAARQLQPVRITTREECKIPGLL-NGDRQGNDVSAMRVDIGARSYD 133 (344)
T ss_pred EEEeccceeceEEEEECC-Cce--EEEEeCCCccccccCCCEEEEEeCCCCEeeEEE-ChhhcCCCHHHEEEEcCCCCHH
Confidence 999999999997754433 233 44442 234444445555554 3 332 1111001112345554333322
Q ss_pred hccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEE
Q 023449 144 KTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTG 181 (282)
Q Consensus 144 ~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g 181 (282)
..-=-..++||.|-++..... .-++.++.-+.|.-+
T Consensus 134 e~~~~GI~~Gd~v~~~~~~~~--~~~~~i~gkalDnR~ 169 (344)
T PRK09961 134 EVMQAGIRPGDRVTFDTTFQV--LPHQRVMGKAFDDRL 169 (344)
T ss_pred HHHhcCCCCCCEEEEcceeEE--ecCCEEEEeechhhH
Confidence 111123889999999988753 234556666666543
No 106
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=1.8e+02 Score=30.59 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=59.3
Q ss_pred cCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeE---EE-EEeE
Q 023449 110 LGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDG---TG-VIVS 185 (282)
Q Consensus 110 ~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg---~g-~I~~ 185 (282)
..--+.||| .++.+...+ ++..+. .+||.||+|+|+.+|..- +=+|---=|+-| -| -|..
T Consensus 438 a~~tl~vNG--~~~~~~~~~-GYa~i~-----------R~Wq~GDrV~L~LpM~vr--~y~nP~~r~~~GAi~rGPlVyc 501 (589)
T COG3533 438 AAPTLRVNG--KEVIQTRGK-GYARIS-----------REWQAGDRVELMLPMPVR--IYANPDVRHDVGAIMRGPLVYC 501 (589)
T ss_pred CCcEEEEcC--cchhhccCC-Ceeeee-----------ehhcCCCeEEEeecceeE--eecCCcchhhhhhhhcCCeEEE
Confidence 356788999 777766542 455554 679999999999998643 222222222221 11 2334
Q ss_pred EEecCCEEEEEEEeCcccc-----cceeeeecEEEcceeeeeee
Q 023449 186 MEPEEDSLWIKVKTDKSLL-----KYIVPKGFIAIDGTSLTVVD 224 (282)
Q Consensus 186 i~~~~~~~~~~i~~p~~l~-----~yiv~KGSIavDGiSLTI~~ 224 (282)
.+...+..-.++-+|..+. ....++|-|+..|-+=-...
T Consensus 502 ~e~~n~e~~~~~~vP~~~~~~~~~~Ld~~~~~~~~~~~~~~~~~ 545 (589)
T COG3533 502 AEAGNDEFPHELPVPNLLTEHEGKALDQPAGAATPKGFSQRTAQ 545 (589)
T ss_pred EecCCCCCceeeeccccccccccccccccccccccCcchhccCC
Confidence 5555555666677776442 22357888888886655444
No 107
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=23.13 E-value=3.2e+02 Score=23.58 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCcEEEEEecCcc--cCCCccCCcEEEc----c--e--eeeceEEcCCcceEEEEeeHH--HHhhccCCCC
Q 023449 83 EIEQLGASNDGGFVMKIRAKTV--LEGVHLGDSIAVN----G--T--CLTVTEFGTQLEDFTVGLSPE--TLRKTSLIEL 150 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~~--l~~i~~ggSIAVN----G--V--cLTV~~i~~~~~~F~v~lipE--TL~~T~L~~l 150 (282)
+|.++++..+....++++.+.. .....+|..|.+. | . -+|+.+...+.+.+++.+-.. =....-|.++
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 3566666544456777775432 2346788877765 1 1 345655432113455554432 2222335678
Q ss_pred CCCCeeeccCCC
Q 023449 151 EPGSLVNLERAV 162 (282)
Q Consensus 151 kvGd~VNLE~al 162 (282)
++||.|.|+-+.
T Consensus 82 ~~G~~v~i~gP~ 93 (234)
T cd06183 82 KPGDTVEIRGPF 93 (234)
T ss_pred CCCCEEEEECCc
Confidence 999999998763
No 108
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=23.12 E-value=6e+02 Score=23.42 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=68.4
Q ss_pred ceEEEEeeHHHHhhccCCCCCCCCeeeccCCCC-CCCccCC--ceEeEE-EeEEEEEeEEEecCCEEEEEE----EeCcc
Q 023449 131 EDFTVGLSPETLRKTSLIELEPGSLVNLERAVQ-PTSRMGG--HFVQGH-VDGTGVIVSMEPEEDSLWIKV----KTDKS 202 (282)
Q Consensus 131 ~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~-~gdrlGG--H~V~GH-VDg~g~I~~i~~~~~~~~~~i----~~p~~ 202 (282)
+++.+.++.-...... ++.|+.|-+|=-++ +.+.-+| |.+.=- ++.+--+.+....++.-.+.+ --+++
T Consensus 47 D~i~v~v~~rlae~~~---l~kG~~v~VeGqlrsy~~~~~G~~R~vl~V~a~~i~~l~~~~~~~~~N~V~LiGrL~~DPe 123 (219)
T PRK05813 47 DILPVTVSERLLAGMD---LKVGTLVIVEGQLRSYNKFIDGKNRLILTVFARNIEYCDERSDIKNPNEIFLDGYICKEPV 123 (219)
T ss_pred cEEEEEEEhhhhhhhc---ccCCCEEEEEEEEEEeccCCCCcEEEEEEEEEEEEEEccCCCccCCccEEEEEEEccCCCe
Confidence 6888888887777665 88999999999998 5554334 443311 111111111111111112211 12333
Q ss_pred cccceeeeecEEEcceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCEeEEehhh
Q 023449 203 LLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDI 261 (282)
Q Consensus 203 l~~yiv~KGSIavDGiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Di 261 (282)
+ +|. +.|. ++=..+|-++.--...+||.+.+.-.+.+. +..+++||.|-||--+
T Consensus 124 l-R~t-~~G~-~va~f~lAvnr~~~~td~i~~v~wg~~Ae~--~~~l~KG~~V~V~GrL 177 (219)
T PRK05813 124 Y-RTT-PFGR-EIADLLLAVNRPYNKSDYIPCIAWGRNARF--CKTLEVGDNIRVWGRV 177 (219)
T ss_pred E-EEC-CCCC-EEEEEEEEEcCCCCCceEEEEEEEhHHhHH--HhhCCCCCEEEEEEEE
Confidence 3 333 5553 333344444432222468888888765553 5679999999999654
No 109
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.93 E-value=3.5e+02 Score=28.78 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=43.3
Q ss_pred EEeEEEec-CCEEEEEEEeCcccccceeeeecEEE--c----ceeeeeeeeeCCCcEEEEEeehhhhhhhcCCCCcCCCE
Q 023449 182 VIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI--D----GTSLTVVDVFDEEECFNFMLVAYTQQKVVIPLKKVGQK 254 (282)
Q Consensus 182 ~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav--D----GiSLTI~~v~~~~~~f~V~LIP~Tl~~T~l~~~kvGd~ 254 (282)
+|+++++. .+.+.|+|+.|.....| -+-.++.| + -..++|++...+++.+++.+-..=.-..-|..+++||.
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~-~pGQFv~l~~~~~~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~ 81 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSR-KPGQFVIVRVGEKGERIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDY 81 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccC-CCCeeEEEEeCCCCCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCE
Confidence 45555544 56777888877422111 12222222 1 25889988764445666666543333334567999999
Q ss_pred e-EEe
Q 023449 255 V-NLE 258 (282)
Q Consensus 255 V-NiE 258 (282)
| .|.
T Consensus 82 v~~v~ 86 (752)
T PRK12778 82 ITDVV 86 (752)
T ss_pred eCeEe
Confidence 8 565
No 110
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=22.68 E-value=2.3e+02 Score=24.55 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred EEEEeCCCCcEEEEEecCcccCCCccCCcEEEcc-----eeeeceEEcCCcceEEEEee--HHHHhhccCCC-CCCCCee
Q 023449 85 EQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNG-----TCLTVTEFGTQLEDFTVGLS--PETLRKTSLIE-LEPGSLV 156 (282)
Q Consensus 85 ~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNG-----VcLTV~~i~~~~~~F~v~li--pETL~~T~L~~-lkvGd~V 156 (282)
.+++...++-+.++++.+..+ ...+|..|.+.= =.+|+.+...+.+.+++.+- +.-.-.+.|.+ +++||.|
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~-~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~~G~~v 80 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPL-PYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPGHAL 80 (222)
T ss_pred ceeeecCCCEEEEEEecCCCC-CcCCCCEEEEEcCCCCceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccCCCCEE
Confidence 344444444667777754322 356788887751 33577666432134555543 33222344544 6999999
Q ss_pred eccCC
Q 023449 157 NLERA 161 (282)
Q Consensus 157 NLE~a 161 (282)
+++-+
T Consensus 81 ~i~gP 85 (222)
T cd06194 81 RLQGP 85 (222)
T ss_pred EEecC
Confidence 99865
No 111
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=22.48 E-value=3.5e+02 Score=25.74 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=48.9
Q ss_pred ccEEEEEEEEeCCCCcEEEEEecCcc--cCCCccCCcEEEc--c----eeeeceEEcCCcceEE--EEeeHHHHhhccC-
Q 023449 79 EEMGEIEQLGASNDGGFVMKIRAKTV--LEGVHLGDSIAVN--G----TCLTVTEFGTQLEDFT--VGLSPETLRKTSL- 147 (282)
Q Consensus 79 d~~G~I~si~~~~~~~~~l~I~~~~~--l~~i~~ggSIAVN--G----VcLTV~~i~~~~~~F~--v~lipETL~~T~L- 147 (282)
...++|.++++..++-+++++..+.- .-...+|..|.+. | -++|+.+...+.+.++ |...|.-.-.+.|
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~L~ 185 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNYLR 185 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCCceeecccCCCCCCCCeEEEEEEECCCCcchhhHh
Confidence 34588998888765566777775411 1136778876653 4 2566665532113444 4444432222335
Q ss_pred CCCCCCCeeeccCC
Q 023449 148 IELEPGSLVNLERA 161 (282)
Q Consensus 148 ~~lkvGd~VNLE~a 161 (282)
..+++||.|.++-+
T Consensus 186 ~~l~~G~~v~i~gP 199 (340)
T PRK11872 186 ERCQVGDEILFEAP 199 (340)
T ss_pred hCCCCCCEEEEEcC
Confidence 46999999999966
No 112
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=21.95 E-value=1.9e+02 Score=21.42 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=35.4
Q ss_pred hccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEE--EecCCEEEEEEEeCcccccceeeeecEE
Q 023449 144 KTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSM--EPEEDSLWIKVKTDKSLLKYIVPKGFIA 214 (282)
Q Consensus 144 ~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i--~~~~~~~~~~i~~p~~l~~yiv~KGSIa 214 (282)
..+...+++|+.|.+- |. .+|+|.++ ..+++...+.+++.+++.. .++++|-+
T Consensus 9 ~~~~~GL~~gs~V~~~---------------Gv--~VG~V~~i~l~~~~~~v~v~~~i~~~~~~-~i~~~s~a 63 (81)
T PF02470_consen 9 FDDAGGLSVGSPVRYR---------------GV--EVGKVTSIELDPDGNRVRVTLRIDPDYWH-RIPDDSRA 63 (81)
T ss_pred ECCcCCCCCcCEEEEC---------------CE--EEEEEEEEEEcCCCCEEEEEEEEcCCcce-ecCCCcEE
Confidence 4556778888777542 22 36777777 6778888999999876411 45665543
No 113
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.80 E-value=2.9e+02 Score=25.68 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=46.0
Q ss_pred CccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEe---
Q 023449 108 VHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIV--- 184 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~--- 184 (282)
+..|+.|.- +-=+++...+. -++.+++- + +.++.+++|+.|.+-.+-.. | -..|+|..++...
T Consensus 220 ~~~G~~v~~-~~l~~i~~~~~--~~v~~~v~-e----~~~~~i~~G~~v~i~~~~~~-----~-~~~g~V~~Is~~~~~~ 285 (327)
T TIGR02971 220 AREGEVIGS-EGILEMGDTSQ--MYAVAEVY-E----TDINRVRVGQRATITSTALS-----G-PLRGTVRRIGSLIAKN 285 (327)
T ss_pred cCCCCccCC-CccEEEecCCc--EEEEEEEc-H----HHHhhCCCCCEEEEEEcCCC-----C-cEEEEEEEeccccccc
Confidence 345555442 33345555443 35555544 4 46788999999999766322 3 4688888775432
Q ss_pred ---EE----EecCCEEEEEEEeCc
Q 023449 185 ---SM----EPEEDSLWIKVKTDK 201 (282)
Q Consensus 185 ---~i----~~~~~~~~~~i~~p~ 201 (282)
.. ......+.+++.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~v~i~l~~ 309 (327)
T TIGR02971 286 DVLSTDPAADADARVVEVKIRLDP 309 (327)
T ss_pred cccCCCCcccCCcceEEEEEEECC
Confidence 11 122345677777764
No 114
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=21.64 E-value=3.9e+02 Score=26.43 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=43.9
Q ss_pred EEEeEEEec------CCEEEEEEEeCcccccceeeeecEEE-------cce-----eeeeeeeeCCC----c--EEEEEe
Q 023449 181 GVIVSMEPE------EDSLWIKVKTDKSLLKYIVPKGFIAI-------DGT-----SLTVVDVFDEE----E--CFNFML 236 (282)
Q Consensus 181 g~I~~i~~~------~~~~~~~i~~p~~l~~yiv~KGSIav-------DGi-----SLTI~~v~~~~----~--~f~V~L 236 (282)
|+|++.+.. .+-+.++++.+.....| .+--+|.| +|- +++|++..+.+ + .|.|..
T Consensus 145 a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~-~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 145 ATVVGNYRLTDEDASSDIHHIVLDFGSHPFPV-LEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEeeeEEccCCCCCCceEEEEEeCCCCcCCc-cCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 777776655 36777888877533333 35555555 221 56777653110 1 345554
Q ss_pred ehh--------hhhhhcCCCCcCCCEeEEe
Q 023449 237 VAY--------TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 237 IP~--------Tl~~T~l~~~kvGd~VNiE 258 (282)
.|+ =.-..-|..+|+||.|.+.
T Consensus 224 v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~ 253 (411)
T TIGR03224 224 VTTDHQGNAVRGVASNYLCDLKKGDKVQVI 253 (411)
T ss_pred EEecCCCCcCcccchhHHhcCCCcCEEEEE
Confidence 542 1223335669999999886
No 115
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=21.44 E-value=3.3e+02 Score=20.26 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=25.7
Q ss_pred CcEEEEEeehhhhhhhcCCCCcCCCEeEEehhh
Q 023449 229 EECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDI 261 (282)
Q Consensus 229 ~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Di 261 (282)
..++.|.+.-. +....+..+++||.|-||-.+
T Consensus 43 ~~~~~v~~~g~-~a~~~~~~~~kG~~V~v~G~l 74 (100)
T cd04496 43 TDWIRVVAFGK-LAENAAKYLKKGDLVYVEGRL 74 (100)
T ss_pred cEEEEEEEEhH-HHHHHHHHhCCCCEEEEEEEE
Confidence 45788888776 667778889999999998654
No 116
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=21.25 E-value=2e+02 Score=22.42 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=24.2
Q ss_pred CEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcEEEEEe
Q 023449 191 DSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEECFNFML 236 (282)
Q Consensus 191 ~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~f~V~L 236 (282)
....+.+... ++.+ ...+..|.+||-+++|.++..++....+.|
T Consensus 52 ~~~~L~v~~~-d~~~-P~~gd~v~~dG~~y~V~~~~~~~G~~~I~L 95 (95)
T PF13856_consen 52 TQPTLYVFSS-DYPK-PRRGDRVVIDGESYTVTRFQEEDGMYVITL 95 (95)
T ss_dssp --EEEEE--S-S------TT-EEEETTEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEcC-CCCC-CCCCCEEEECCeEEEEeEEecCCCEEEEEC
Confidence 3444444433 3444 667888999999999999985555555543
No 117
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=21.18 E-value=3e+02 Score=25.42 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=43.9
Q ss_pred EEEEeEEEecC------CEEEEEEEeCcccccceeeeecEEE--------cc-----eeeeeeeeeCC------CcEEEE
Q 023449 180 TGVIVSMEPEE------DSLWIKVKTDKSLLKYIVPKGFIAI--------DG-----TSLTVVDVFDE------EECFNF 234 (282)
Q Consensus 180 ~g~I~~i~~~~------~~~~~~i~~p~~l~~yiv~KGSIav--------DG-----iSLTI~~v~~~------~~~f~V 234 (282)
.++|+++++.. +.+.++++.++. .+|. +-.+|.| || =+++|++.... .-.|.|
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~V 87 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGK-LPYL-EGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCV 87 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCc-cccc-CCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEE
Confidence 47788888764 788888887543 2332 3335555 23 23566654211 123555
Q ss_pred Eeehh----------hhhhhcCCCCcCCCEeEEe
Q 023449 235 MLVAY----------TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 235 ~LIP~----------Tl~~T~l~~~kvGd~VNiE 258 (282)
...+. =.-..-|..+++||.|++.
T Consensus 88 k~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 121 (286)
T cd06208 88 KRLVYTDPETDETKKGVCSNYLCDLKPGDDVQIT 121 (286)
T ss_pred EEEEEecCCCCceeccchHHHHhhCCCCCEEEEE
Confidence 55543 1223345668999999987
No 118
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=21.08 E-value=29 Score=35.83 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=37.6
Q ss_pred eeeccCCCCCCCccCCceEeEEEeEEEEEeEEEec--CCEEEEEEEeCcccccceeeeecEEE
Q 023449 155 LVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPE--EDSLWIKVKTDKSLLKYIVPKGFIAI 215 (282)
Q Consensus 155 ~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~--~~~~~~~i~~p~~l~~yiv~KGSIav 215 (282)
.+-+|.+ .++|||.++|-|-..+-..+.-++ ++.-.+...+.++-++||..||.|.|
T Consensus 108 VcvvEKa----a~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~fLt~~~~i~v 166 (621)
T KOG2415|consen 108 VCVVEKA----AEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFKFLTGKGRISV 166 (621)
T ss_pred EEEEeec----cccCCceecceeeccchhhhhCcchhhcCCcccccccccceeeeccCceeec
Confidence 3456665 679999999999887766665443 22223334455666788888887654
No 119
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=20.87 E-value=1.3e+02 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=22.6
Q ss_pred CcEEEEEeehhhhhhhcCCCCcCCCEeEEehhh
Q 023449 229 EECFNFMLVAYTQQKVVIPLKKVGQKVNLEVDI 261 (282)
Q Consensus 229 ~~~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Di 261 (282)
.+|+.|.+--. ++..-...+++||.|.||-.+
T Consensus 47 ~~~~~v~~~g~-~A~~~~~~l~kG~~V~V~G~l 78 (104)
T PF00436_consen 47 TDWINVVAWGK-LAENVAEYLKKGDRVYVEGRL 78 (104)
T ss_dssp EEEEEEEEEHH-HHHHHHHH--TT-EEEEEEEE
T ss_pred eEEEEEEeeee-cccccceEEcCCCEEEEEEEE
Confidence 35888888877 666667779999999999654
No 120
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=20.72 E-value=4.4e+02 Score=25.25 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=45.2
Q ss_pred EEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEE----cce------eeeceEEcCCcceEEEEeeHH--HHhhccC-
Q 023449 83 EIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAV----NGT------CLTVTEFGTQLEDFTVGLSPE--TLRKTSL- 147 (282)
Q Consensus 83 ~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAV----NGV------cLTV~~i~~~~~~F~v~lipE--TL~~T~L- 147 (282)
+|.++....++-+.|++.++. ......+|..+.| +|. ++|+.+...+ +.+++.+-.. =.-..-|
T Consensus 158 ~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~-~~l~~~Vk~~~~G~~S~~L~ 236 (399)
T PRK13289 158 RVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNG-KYYRISVKREAGGKVSNYLH 236 (399)
T ss_pred EEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCC-CeEEEEEEECCCCeehHHHh
Confidence 677777765545677777532 1224678887766 443 3566655321 4555554322 1112224
Q ss_pred CCCCCCCeeeccCC
Q 023449 148 IELEPGSLVNLERA 161 (282)
Q Consensus 148 ~~lkvGd~VNLE~a 161 (282)
..+++||.|++.-+
T Consensus 237 ~~l~~Gd~v~v~gP 250 (399)
T PRK13289 237 DHVNVGDVLELAAP 250 (399)
T ss_pred hcCCCCCEEEEEcC
Confidence 35999999999876
Done!