Query 023449
Match_columns 282
No_of_seqs 213 out of 1689
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kzl_A Riboflavin synthase; bi 100.0 2E-77 6.8E-82 535.1 20.6 196 73-272 1-197 (208)
2 1i8d_A Riboflavin synthase; ri 100.0 6.3E-77 2.1E-81 533.5 21.2 194 73-271 1-196 (213)
3 3a35_A Lumazine protein, LUMP; 100.0 3E-74 1E-78 508.5 17.6 187 73-265 1-189 (190)
4 3ddy_A Lumazine protein, LUMP; 100.0 7.4E-71 2.5E-75 485.4 17.5 181 73-259 1-182 (186)
5 3a35_A Lumazine protein, LUMP; 100.0 9E-31 3.1E-35 231.1 10.5 99 61-162 85-185 (190)
6 3ddy_A Lumazine protein, LUMP; 100.0 8E-31 2.7E-35 230.7 9.8 97 61-160 85-182 (186)
7 1i8d_A Riboflavin synthase; ri 100.0 2.1E-30 7.1E-35 232.3 9.2 98 62-162 87-186 (213)
8 1kzl_A Riboflavin synthase; bi 100.0 1.3E-29 4.3E-34 226.5 10.3 98 62-162 87-186 (208)
9 3h43_A Proteasome-activating n 55.2 16 0.00056 27.5 4.6 32 97-128 43-76 (85)
10 1ep3_B Dihydroorotate dehydrog 49.7 35 0.0012 29.3 6.5 81 81-161 7-97 (262)
11 2pia_A Phthalate dioxygenase r 42.5 49 0.0017 29.4 6.5 80 82-161 11-101 (321)
12 2bgi_A Ferredoxin-NADP(H) redu 41.3 56 0.0019 28.1 6.5 78 80-159 17-105 (272)
13 2qdx_A Ferredoxin reductase; o 41.3 63 0.0022 27.4 6.8 77 81-159 5-91 (257)
14 3vo2_A Putative uncharacterize 40.9 61 0.0021 28.6 6.8 82 79-161 33-146 (310)
15 2eix_A NADH-cytochrome B5 redu 40.5 64 0.0022 27.0 6.6 81 81-161 13-105 (243)
16 2eix_A NADH-cytochrome B5 redu 38.8 1.1E+02 0.0037 25.5 7.8 78 180-258 13-103 (243)
17 1krh_A Benzoate 1,2-dioxygenas 38.1 81 0.0028 28.0 7.2 82 79-161 108-200 (338)
18 2wg5_A General control protein 37.8 34 0.0012 26.7 4.1 33 96-128 61-95 (109)
19 1ep3_B Dihydroorotate dehydrog 35.4 1.2E+02 0.0041 25.8 7.7 78 180-258 7-95 (262)
20 2r6h_A NADH:ubiquinone oxidore 34.7 1.2E+02 0.004 26.1 7.5 35 81-116 11-47 (290)
21 2gpj_A Siderophore-interacting 33.4 80 0.0027 27.0 6.2 80 81-162 10-103 (252)
22 4fk8_A Ferredoxin--NADP reduct 33.4 83 0.0028 26.8 6.3 79 81-161 21-110 (271)
23 1umk_A B5R, NADH-cytochrome B5 32.3 1.1E+02 0.0039 25.9 7.0 78 180-258 18-117 (275)
24 1umk_A B5R, NADH-cytochrome B5 31.8 94 0.0032 26.5 6.4 81 81-161 18-119 (275)
25 2pia_A Phthalate dioxygenase r 31.7 1.3E+02 0.0045 26.6 7.6 79 180-259 10-100 (321)
26 2r6h_A NADH:ubiquinone oxidore 31.7 1.6E+02 0.0055 25.1 7.9 22 180-201 11-33 (290)
27 2bgi_A Ferredoxin-NADP(H) redu 31.4 1.8E+02 0.0062 24.8 8.2 78 178-258 16-105 (272)
28 3vo2_A Putative uncharacterize 30.8 1.4E+02 0.0049 26.2 7.6 78 179-258 34-144 (310)
29 2cnd_A NADH-dependent nitrate 30.6 1.4E+02 0.0047 25.3 7.2 78 180-258 14-113 (270)
30 3htn_A Putative DNA binding pr 30.3 27 0.00092 28.6 2.4 26 165-190 105-130 (149)
31 1krh_A Benzoate 1,2-dioxygenas 29.9 1.8E+02 0.0062 25.6 8.2 78 179-258 109-198 (338)
32 1fdr_A Flavodoxin reductase; f 28.6 96 0.0033 25.9 5.8 76 81-159 6-91 (248)
33 2cnd_A NADH-dependent nitrate 28.4 99 0.0034 26.2 5.9 81 81-161 14-115 (270)
34 2qdx_A Ferredoxin reductase; o 27.6 2.1E+02 0.0073 24.0 7.9 76 180-258 5-91 (257)
35 1fnb_A Ferredoxin-NADP+ reduct 26.0 1.6E+02 0.0055 25.8 7.0 77 180-258 39-148 (314)
36 2pls_A CBS domain protein; APC 25.1 62 0.0021 23.5 3.4 21 108-128 54-74 (86)
37 3lae_A UPF0053 protein HI0107; 25.1 63 0.0021 23.3 3.4 21 108-128 50-70 (81)
38 3hwu_A Putative DNA-binding pr 24.4 41 0.0014 27.3 2.5 22 165-186 101-123 (147)
39 3fpp_A Macrolide-specific effl 24.3 63 0.0022 28.6 4.0 63 107-181 168-233 (341)
40 1fnb_A Ferredoxin-NADP+ reduct 23.3 1.4E+02 0.0048 26.1 6.1 80 81-161 39-150 (314)
41 3llb_A Uncharacterized protein 23.0 70 0.0024 23.2 3.4 21 108-128 50-70 (83)
42 1qfj_A Protein (flavin reducta 22.9 53 0.0018 27.2 3.0 80 81-161 4-91 (232)
43 1tvc_A Methane monooxygenase c 22.3 41 0.0014 28.5 2.2 80 82-161 13-106 (250)
44 2p4p_A Hypothetical protein HD 22.1 77 0.0026 23.0 3.4 21 108-128 52-72 (86)
45 2b5o_A FNR, ferredoxin--NADP r 22.0 2E+02 0.0069 26.6 7.1 82 80-161 123-238 (402)
46 4drs_A Pyruvate kinase; glycol 21.4 1.2E+02 0.0041 30.1 5.6 54 96-158 148-203 (526)
47 2pli_A Uncharacterized protein 21.0 80 0.0027 23.3 3.4 21 108-128 59-79 (91)
48 2e28_A Pyruvate kinase, PK; al 20.5 1.6E+02 0.0054 29.6 6.3 56 95-159 103-162 (587)
49 3lo8_A Ferredoxin--NADP reduct 20.5 3.5E+02 0.012 23.4 8.1 82 79-161 28-147 (311)
50 2oai_A Hemolysin; PFAM03471, x 20.3 86 0.003 23.3 3.4 21 108-128 62-82 (94)
51 3lnn_A Membrane fusion protein 20.1 1.4E+02 0.0047 26.6 5.3 79 107-200 185-264 (359)
No 1
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=100.00 E-value=2e-77 Score=535.06 Aligned_cols=196 Identities=51% Similarity=0.836 Sum_probs=187.4
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEP 152 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkv 152 (282)
|||||||++|+|.++++.++.+++++|+++.+++++++|||||||||||||+++.+ ++|+|++|||||++|||+.|++
T Consensus 1 MFTGiVe~vG~V~~i~~~~~~~~~l~i~~~~~~~~l~~g~SIAvnGvcLTV~~~~~--~~F~vdvipETl~~T~Lg~l~~ 78 (208)
T 1kzl_A 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDR--YHFTVGIAPESLRLTNLGQCKA 78 (208)
T ss_dssp CBCSCCCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEECS--SEEEEEECHHHHHHSSGGGCCT
T ss_pred CCCEEeceEEEEEEEEECCCceEEEEEechHHhcccCCCCEEEECCEEeeEEEEcC--CEEEEEEeHHHHhhccccccCC
Confidence 99999999999999998763267888986567799999999999999999999998 8999999999999999999999
Q ss_pred CCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEe-CcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 153 GSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKT-DKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 153 Gd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~-p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
||+|||||||++|||+|||+|||||||+|+|.++++++++++++|++ |+++++|+++|||||||||||||+++. +++
T Consensus 79 Gd~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p~~l~~yiv~KGsIaidGiSLTV~~v~--~~~ 156 (208)
T 1kzl_A 79 GDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD--DST 156 (208)
T ss_dssp TCEEEEEECCCCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC--SSC
T ss_pred CCEEEeccCCCCCCcccceEeccEEeeeeEEEEEEecCCcEEEEEEeCCHHHHhhhhhCCEEEEeeEEeEEEeEc--CCE
Confidence 99999999999999999999999999999999999999999999999 999999999999999999999999998 468
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHcc
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLSS 272 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~~ 272 (282)
|+|+|||||+++|||+.+|+||+||||+|+++|||+|++..
T Consensus 157 F~v~lIP~T~~~T~l~~~~~Gd~VNlE~D~~~kyv~~~~~~ 197 (208)
T 1kzl_A 157 FSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEA 197 (208)
T ss_dssp EEEEECHHHHTTSGGGGCCTTCEEEEEECTHHHHHHHHHHH
T ss_pred EEEEEehhhHhhcccccCCCCCEEEEeEehHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999853
No 2
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=100.00 E-value=6.3e-77 Score=533.49 Aligned_cols=194 Identities=36% Similarity=0.528 Sum_probs=187.0
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++.++ .++++|.++ .+++++++|||||||||||||+++++ ++|+|++|||||++|||+.|+
T Consensus 1 MFTGiV~~vG~V~~i~~~~~-~~~l~i~~~~~~~~~l~~g~SIAvnGvcLTV~~v~~--~~F~vdvipETl~~T~Lg~l~ 77 (213)
T 1i8d_A 1 MFTGIVQGTAKLVSIDEKPN-FRTHVVELPDHMLDGLETGASVAHNGCCLTVTEING--NHVSFDLMKETLRITNLGDLK 77 (213)
T ss_dssp CBCSCCCEEEEEEEEEECSS-EEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEET--TEEEEEEEHHHHHHSGGGGCC
T ss_pred CCCEEeceEEEEEEEEECCC-cEEEEEEEChHHhccCCCCcEEEECCEEeeEEEEcC--CEEEEEEeHHHHhhcccccCC
Confidence 99999999999999998765 678899876 56799999999999999999999998 899999999999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcc-cccceeeeecEEEcceeeeeeeeeCCCc
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKS-LLKYIVPKGFIAIDGTSLTVVDVFDEEE 230 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~-l~~yiv~KGSIavDGiSLTI~~v~~~~~ 230 (282)
+||+|||||||++|||+|||+|||||||+|+|.++++++++++++|++|++ +++|+++|||||||||||||+++. ++
T Consensus 78 ~Gd~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~p~~~l~~yiv~KGsIavdGvSLTV~~v~--~~ 155 (213)
T 1i8d_A 78 VGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT--PT 155 (213)
T ss_dssp TTCEEEEEECCBTTSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBC--SS
T ss_pred CCCEEEeCcCCCCCCcccCeeEEEEeeEEEEEEEEEEcCCeEEEEEEeCHHHhHhhceeCCeEEEccEEEEEEEec--CC
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999998 47
Q ss_pred EEEEEeehhhhhhhcCCCCcCCCEeEEehhhhHHHHHHHHc
Q 023449 231 CFNFMLVAYTQQKVVIPLKKVGQKVNLEVDILGKYVERLLS 271 (282)
Q Consensus 231 ~f~V~LIP~Tl~~T~l~~~kvGd~VNiE~Dil~kyv~~~l~ 271 (282)
+|+|+|||||+++|||+.+|+||+||||+|+++|||+|++.
T Consensus 156 ~F~v~lIP~T~~~T~l~~~~~Gd~VNlE~D~~~kyv~~~~~ 196 (213)
T 1i8d_A 156 RFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVE 196 (213)
T ss_dssp EEEEEECHHHHHHSSGGGCCTTCEEEEEECHHHHHHHHHHH
T ss_pred EEEEEEchHHHhhCccccCCCCCEEEEeEchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999876
No 3
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=100.00 E-value=3e-74 Score=508.50 Aligned_cols=187 Identities=25% Similarity=0.386 Sum_probs=172.2
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++.++ ++.+++..+ .+++++++|||||||||||||+++++ ++|+|+ |||||++|||+.|+
T Consensus 1 MFTGiV~~~G~V~~i~~~~~-~~~~~i~i~~~~~~~l~~g~SIAvnGvcLTV~~v~~--~~F~v~-ipeTl~~T~Lg~l~ 76 (190)
T 3a35_A 1 MFKGIVQGAGIIKKISKNDD-TQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISG--DVVYFD-IDQAINTTTFRELE 76 (190)
T ss_dssp CBCSCCCEEEEEEEEEECSS-CEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEET--TEEEEE-ESTTTTTSSGGGCC
T ss_pred CCCEEeCeEEEEEEEEECCC-cEEEEEEECchhhccCCCCCEEEECCEEeeEEEEcC--CEEEEe-cHHHHhhcccccCC
Confidence 99999999999999998765 344444433 35689999999999999999999998 899999 99999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
+||+||||+||++|||+|||+|||||||+|+|.++++++++++++|++|+++++|+++|||||||||||||+++. +++
T Consensus 77 ~Gd~VNLEral~~g~rlgGH~v~GHVdg~g~i~~~~~~~~~~~~~~~~p~~~~~yi~~KGsIavdGvSLTV~~v~--~~~ 154 (190)
T 3a35_A 77 VGNKVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEIS--DDI 154 (190)
T ss_dssp TTCEEEEECCCSSCCCCCSSCBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEE--TTE
T ss_pred CCCEEEeCcCCcCCCccCCeeEEEEEeEEEEEEEEEEcCCeEEEEEEeCHHHHhcCCcCCEEEECCEEEEEEEec--CCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 478
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEe-hhhhHHH
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLE-VDILGKY 265 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE-~Dil~ky 265 (282)
|+|+|||||+++|||+.+|+||+|||| +|+++||
T Consensus 155 f~v~lIP~T~~~T~l~~~~~Gd~VNlE~~D~~~ky 189 (190)
T 3a35_A 155 IFINYPKNLSITTNLGTLEKGSDVNVETLNVSNEW 189 (190)
T ss_dssp EEEEEETTHHHHSGGGGCCTTCEEEEEECC-----
T ss_pred EEEEEeHHHHhhcccccCcCCCEEEEecccccccc
Confidence 999999999999999999999999999 9999999
No 4
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=100.00 E-value=7.4e-71 Score=485.43 Aligned_cols=181 Identities=24% Similarity=0.304 Sum_probs=166.7
Q ss_pred eeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeHHHHhhccCCCCC
Q 023449 73 LFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSPETLRKTSLIELE 151 (282)
Q Consensus 73 MFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lipETL~~T~L~~lk 151 (282)
|||||||++|+|.++++.++ +.+++|++| .+++++++|||||||||||||+++++ ++|++++ ||||++|+|+.|+
T Consensus 1 MFTGiVe~vG~V~~i~~~~~-~~~l~i~~~~~~~~~~~~GdSIAvnGvCLTV~~~~~--~~f~vdv-~ETl~~T~Lg~l~ 76 (186)
T 3ddy_A 1 MFRGIVQGRGVIRSISKSED-SQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILG--DMVYFDI-DQALGTTTFDGLK 76 (186)
T ss_dssp CBCSCCCEEEEEEEEEECSS-CEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEET--TEEEEEE-CTTTTTSSGGGCC
T ss_pred CCCeeeCeEEEEEEEEECCC-cEEEEEEeChHHhccCCCCCeEEEeeEEEEEEEEcC--CEEEEEh-HHhhhhCchhhcC
Confidence 99999999999999999875 789999986 47899999999999999999999999 8999999 9999999999999
Q ss_pred CCCeeeccCCCCCCCccCCceEeEEEeEEEEEeEEEecCCEEEEEEEeCcccccceeeeecEEEcceeeeeeeeeCCCcE
Q 023449 152 PGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFDEEEC 231 (282)
Q Consensus 152 vGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~i~~~~~~~~~~i~~p~~l~~yiv~KGSIavDGiSLTI~~v~~~~~~ 231 (282)
+||+|||||||++|||+|||+|||||||+|+|.++++++++++++|++|+++++|+++|||||||||||||+++. +++
T Consensus 77 ~G~~VNLEral~~~~rlgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~~p~~l~~~i~~KgSIavdGvSLTV~~v~--~~~ 154 (186)
T 3ddy_A 77 EGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMS--DSI 154 (186)
T ss_dssp TTCEEEEECCC---------CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEE--TTE
T ss_pred CCCEEEECCCCCCCCccCCeeEEEEEeEEEEEEEEEECCCeEEEEEEcCHHHhhccccCcEEEEEeEEEEEEeec--CCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 579
Q ss_pred EEEEeehhhhhhhcCCCCcCCCEeEEeh
Q 023449 232 FNFMLVAYTQQKVVIPLKKVGQKVNLEV 259 (282)
Q Consensus 232 f~V~LIP~Tl~~T~l~~~kvGd~VNiE~ 259 (282)
|+|+|||||+++|||+.+|+||+||||+
T Consensus 155 f~v~lIp~Tl~~T~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 155 ITLNYSRDLLASTNIASLAKDVKVNVEI 182 (186)
T ss_dssp EEEEEEGGGGGTSSGGGCCTTCEEEEEE
T ss_pred EEEEEcHHHHhhcccccCccCCEEEEEE
Confidence 9999999999999999999999999997
No 5
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=99.97 E-value=9e-31 Score=231.06 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=93.3
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
.+||+++|+|||+||||||++|+|.++++.++ +++++|++| .+++|+.+|||||||||||||+++++ ++|+|++||
T Consensus 85 ral~~g~rlgGH~v~GHVdg~g~i~~~~~~~~-~~~~~~~~p~~~~~yi~~KGsIavdGvSLTV~~v~~--~~f~v~lIP 161 (190)
T 3a35_A 85 VRPEFGSLLGKGALTGNIKGVATVDNITEEED-RLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISD--DIIFINYPK 161 (190)
T ss_dssp CCCSSCCCCCSSCBCSCCCEEEEEEEEEEETT-EEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEET--TEEEEEEET
T ss_pred cCCcCCCccCCeeEEEEEeEEEEEEEEEEcCC-eEEEEEEeCHHHHhcCCcCCEEEECCEEEEEEEecC--CEEEEEEeH
Confidence 38999999999999999999999999999886 788999866 58899999999999999999999998 899999999
Q ss_pred HHHhhccCCCCCCCCeeecc-CCC
Q 023449 140 ETLRKTSLIELEPGSLVNLE-RAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE-~al 162 (282)
||+++|||+.+++||+|||| .|+
T Consensus 162 ~T~~~T~l~~~~~Gd~VNlE~~D~ 185 (190)
T 3a35_A 162 NLSITTNLGTLEKGSDVNVETLNV 185 (190)
T ss_dssp THHHHSGGGGCCTTCEEEEEECC-
T ss_pred HHHhhcccccCcCCCEEEEecccc
Confidence 99999999999999999999 986
No 6
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=99.97 E-value=8e-31 Score=230.72 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=83.2
Q ss_pred CcccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 61 SGTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 61 ~~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
.+||+++|+|||+||||||++|+|.++++.++ +++++|+.| .+++|+.+|||||||||||||+++++ ++|+|++||
T Consensus 85 ral~~~~rlgGH~vsGHVdg~g~i~~i~~~~~-~~~~~i~~p~~l~~~i~~KgSIavdGvSLTV~~v~~--~~f~v~lIp 161 (186)
T 3ddy_A 85 IHPKFGEVVGRGGLTGNIKGTALVAAIEENDA-GFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSD--SIITLNYSR 161 (186)
T ss_dssp CCC---------CBCSCCCEEEEEEEEECCSS-EEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEET--TEEEEEEEG
T ss_pred CCCCCCCccCCeeEEEEEeEEEEEEEEEECCC-eEEEEEEcCHHHhhccccCcEEEEEeEEEEEEeecC--CEEEEEEcH
Confidence 38999999999999999999999999999876 788999865 68899999999999999999999999 899999999
Q ss_pred HHHhhccCCCCCCCCeeeccC
Q 023449 140 ETLRKTSLIELEPGSLVNLER 160 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~ 160 (282)
||+++|||+.+++||+||||.
T Consensus 162 ~Tl~~T~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 162 DLLASTNIASLAKDVKVNVEI 182 (186)
T ss_dssp GGGGTSSGGGCCTTCEEEEEE
T ss_pred HHHhhcccccCccCCEEEEEE
Confidence 999999999999999999997
No 7
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=99.96 E-value=2.1e-30 Score=232.29 Aligned_cols=98 Identities=24% Similarity=0.368 Sum_probs=93.2
Q ss_pred cccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEecC-c-ccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 62 GTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRAK-T-VLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 62 ~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~~-~-~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
+||+++|+|||+||||||++|+|.++++.++ +++++|++| . +++|+.+|||||||||||||+++++ ++|+|.+||
T Consensus 87 al~~g~rlgGH~VsGHVDg~g~i~~~~~~~~-~~~~~~~~p~~~l~~yiv~KGsIavdGvSLTV~~v~~--~~F~v~lIP 163 (213)
T 1i8d_A 87 AAKFSDEIGGHLMSGHIMTTAEVAKILTSEN-NRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTP--TRFCVHLIP 163 (213)
T ss_dssp CCBTTSCCSSCCBCCCCCEEEEEEEEEEETT-EEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCS--SEEEEEECH
T ss_pred CCCCCCcccCeeEEEEeeEEEEEEEEEEcCC-eEEEEEEeCHHHhHhhceeCCeEEEccEEEEEEEecC--CEEEEEEch
Confidence 8999999999999999999999999999876 788888865 4 7899999999999999999999999 899999999
Q ss_pred HHHhhccCCCCCCCCeeeccCCC
Q 023449 140 ETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~al 162 (282)
||+++|||+.+++||+||||.|+
T Consensus 164 ~T~~~T~l~~~~~Gd~VNlE~D~ 186 (213)
T 1i8d_A 164 ETLERTTLGKKKLGARVNIEIDP 186 (213)
T ss_dssp HHHHHSSGGGCCTTCEEEEEECH
T ss_pred HHHhhCccccCCCCCEEEEeEch
Confidence 99999999999999999999986
No 8
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=99.96 E-value=1.3e-29 Score=226.48 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=93.2
Q ss_pred cccccccccceeeeeeeccEEEEEEEEeCCCCcEEEEEec-C-cccCCCccCCcEEEcceeeeceEEcCCcceEEEEeeH
Q 023449 62 GTQFHNRMIRCLFTGIVEEMGEIEQLGASNDGGFVMKIRA-K-TVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTVGLSP 139 (282)
Q Consensus 62 ~lr~~~~~gGHMFTGhId~~G~I~si~~~~~~~~~l~I~~-~-~~l~~i~~ggSIAVNGVcLTV~~i~~~~~~F~v~lip 139 (282)
+||+++|+|||+++||||++|+|.++++.++ ++++++++ | .+++|+.+|||||||||||||+++++ ++|+|.+||
T Consensus 87 al~~g~rlgGH~VsGHVDg~g~i~~~~~~~~-~~~~~~~~~p~~l~~yiv~KGsIaidGiSLTV~~v~~--~~F~v~lIP 163 (208)
T 1kzl_A 87 AVLSSTRMGGHFVQGHVDTVAEIVEKKQDGE-AIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDD--STFSIMMIS 163 (208)
T ss_dssp CCCCSCCSSSCCBCSCCCEEEEEEEEEEETT-EEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECS--SCEEEEECH
T ss_pred CCCCCCcccceEeccEEeeeeEEEEEEecCC-cEEEEEEeCCHHHHhhhhhCCEEEEeeEEeEEEeEcC--CEEEEEEeh
Confidence 8999999999999999999999999999876 78888887 5 58899999999999999999999998 899999999
Q ss_pred HHHhhccCCCCCCCCeeeccCCC
Q 023449 140 ETLRKTSLIELEPGSLVNLERAV 162 (282)
Q Consensus 140 ETL~~T~L~~lkvGd~VNLE~al 162 (282)
||+++|+|+.+++||+||||.|+
T Consensus 164 ~T~~~T~l~~~~~Gd~VNlE~D~ 186 (208)
T 1kzl_A 164 YTQSKVIMAKKNVGDLVNVEVDQ 186 (208)
T ss_dssp HHHTTSGGGGCCTTCEEEEEECT
T ss_pred hhHhhcccccCCCCCEEEEeEeh
Confidence 99999999999999999999996
No 9
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=55.23 E-value=16 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=24.6
Q ss_pred EEEecCccc--CCCccCCcEEEcceeeeceEEcC
Q 023449 97 MKIRAKTVL--EGVHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 97 l~I~~~~~l--~~i~~ggSIAVNGVcLTV~~i~~ 128 (282)
+.+.+.... +.+++|++||+|--+++|.++-+
T Consensus 43 ~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp 76 (85)
T 3h43_A 43 FLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76 (85)
T ss_dssp EEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC
T ss_pred EEEEecCccCHHHCCCCCEEEECCcccCHhhhhh
Confidence 444543332 57999999999999999999865
No 10
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=49.71 E-value=35 Score=29.34 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=51.2
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc--c------eeeeceEEcCCcceEEEEeeH--HHHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN--G------TCLTVTEFGTQLEDFTVGLSP--ETLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN--G------VcLTV~~i~~~~~~F~v~lip--ETL~~T~L~~l 150 (282)
..+|.++++..++.++|++..+.......+|..|.+. + =.+|+.+...+.+.+++.+-. .-.-..-|.++
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l~~l 86 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKL 86 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHHHTC
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHHhcC
Confidence 3677777765444678888865433356789988874 1 357787765311556665544 32222335578
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++-+
T Consensus 87 ~~Gd~v~v~gP 97 (262)
T 1ep3_B 87 ESGAKVDVMGP 97 (262)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCCEEEEEcc
Confidence 99999999865
No 11
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=42.50 E-value=49 Score=29.44 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEE---cc--eeeeceEEcCCcceEEEEee--HHHH-hhccCC-CC
Q 023449 82 GEIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAV---NG--TCLTVTEFGTQLEDFTVGLS--PETL-RKTSLI-EL 150 (282)
Q Consensus 82 G~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAV---NG--VcLTV~~i~~~~~~F~v~li--pETL-~~T~L~-~l 150 (282)
.+|.++++..++.++|++..+. .+....+|..|.+ || =++|+.+...+.+.+++.+- +.-. -..-|. ++
T Consensus 11 ~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g~~R~ySi~s~~~~~~~l~i~Vk~~~~G~g~S~~L~~~l 90 (321)
T 2pia_A 11 LKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDT 90 (321)
T ss_dssp EEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTSCEEEEECCSCTTCCSEEEEEEECCTTSCSHHHHHHHSC
T ss_pred EEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCCCcEEEEeCCCCCCCCeEEEEEEEecCCcchhHHHHhcC
Confidence 5677776654446788888653 2345789998887 34 36777766432245666665 3222 122244 78
Q ss_pred CCCCeeeccCC
Q 023449 151 EPGSLVNLERA 161 (282)
Q Consensus 151 kvGd~VNLE~a 161 (282)
++||.|.++-+
T Consensus 91 ~~Gd~v~v~gP 101 (321)
T 2pia_A 91 SEGDAVEVSLP 101 (321)
T ss_dssp CTTCEEEECCC
T ss_pred CCCCEEEEeCC
Confidence 99999999876
No 12
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=41.28 E-value=56 Score=28.14 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=49.0
Q ss_pred cEEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEE-----cc----eeeeceEEcCCcceEEEEeeHH--HHhhccCC
Q 023449 80 EMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAV-----NG----TCLTVTEFGTQLEDFTVGLSPE--TLRKTSLI 148 (282)
Q Consensus 80 ~~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAV-----NG----VcLTV~~i~~~~~~F~v~lipE--TL~~T~L~ 148 (282)
..++|.++++..++-++|++..+..+ ...+|..|.+ || =.+|+.+...+ +.+++.+... -.-..-|.
T Consensus 17 ~~~~V~~~~~~~~~~~~l~l~~~~~~-~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G~~s~~l~ 94 (272)
T 2bgi_A 17 DAQTVTSVRHWTDTLFSFRVTRPQTL-RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDGPLTSRLQ 94 (272)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCTTC-CCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTCTTHHHHT
T ss_pred EEEEEEEEEEcCCCEEEEEEeCCCCC-ccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCCCchhHHH
Confidence 34677877765444678888765433 4678888765 34 25577666432 4666655432 22223356
Q ss_pred CCCCCCeeecc
Q 023449 149 ELEPGSLVNLE 159 (282)
Q Consensus 149 ~lkvGd~VNLE 159 (282)
++++||.|.++
T Consensus 95 ~l~~Gd~v~v~ 105 (272)
T 2bgi_A 95 HIKVGEQIILR 105 (272)
T ss_dssp TCCTTCEEEEE
T ss_pred hCCCCCEEEEe
Confidence 79999999997
No 13
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=41.27 E-value=63 Score=27.37 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=47.8
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c----eeeeceEEcCCcceEEEEeeHH--HHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G----TCLTVTEFGTQLEDFTVGLSPE--TLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G----VcLTV~~i~~~~~~F~v~lipE--TL~~T~L~~l 150 (282)
.++|.++++..++-++|++..+..+ ...+|..|.+. | =.+|+.+...+ +.+++.+... -.-..-|.++
T Consensus 5 ~~~V~~~~~~~~~~~~l~l~~~~~~-~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~~s~~l~~l 82 (257)
T 2qdx_A 5 TERVLSVHHWNDTLFSFKTTRNPGL-RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGPLTSRLQHL 82 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTC-CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECCTTCTTHHHHTTC
T ss_pred EEEEEEEEEcCCCeEEEEEeCCCCC-ccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEeCCCcchhHHHhC
Confidence 3567777765444678888765433 46789887663 4 25577665432 4566655432 2222335579
Q ss_pred CCCCeeecc
Q 023449 151 EPGSLVNLE 159 (282)
Q Consensus 151 kvGd~VNLE 159 (282)
++||.|.++
T Consensus 83 ~~Gd~v~v~ 91 (257)
T 2qdx_A 83 KEGDELMVS 91 (257)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEe
Confidence 999999997
No 14
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=40.92 E-value=61 Score=28.63 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=50.6
Q ss_pred ccEEEEEEEEeCCCC-----cEEEEEecCcccCCCccCCcEEEc--ce----------eeeceEEcC----CcceEEEEe
Q 023449 79 EEMGEIEQLGASNDG-----GFVMKIRAKTVLEGVHLGDSIAVN--GT----------CLTVTEFGT----QLEDFTVGL 137 (282)
Q Consensus 79 d~~G~I~si~~~~~~-----~~~l~I~~~~~l~~i~~ggSIAVN--GV----------cLTV~~i~~----~~~~F~v~l 137 (282)
...++|.++++.... .++|++..+..+. ..+|.+|.|. |+ .+|+.+... +.+.+++.+
T Consensus 33 ~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~-~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V 111 (310)
T 3vo2_A 33 PYVGRCLSNTRITGDDAPGETWHMVFSTEGEIP-YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCV 111 (310)
T ss_dssp CEEEEEEEEEECSCSSSSSCEEEEEEECTTCCC-CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEE
T ss_pred CEEEEEEEEEEccCCCCCccEEEEEEeCCCCCc-ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEE
Confidence 346677777775432 6778888654443 6789999873 32 567776531 114555555
Q ss_pred eHH-----------HHhhccCCCCCCCCeeeccCC
Q 023449 138 SPE-----------TLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 138 ipE-----------TL~~T~L~~lkvGd~VNLE~a 161 (282)
-.. =.-..-|.++++||.|.++-+
T Consensus 112 k~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP 146 (310)
T 3vo2_A 112 KRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGP 146 (310)
T ss_dssp ECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEE
T ss_pred EEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEec
Confidence 432 222334556899999999855
No 15
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=40.53 E-value=64 Score=26.97 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=48.1
Q ss_pred EEEEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEE----cce----eeeceEEcCCcceEEEEeeHH--HHhhccCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAV----NGT----CLTVTEFGTQLEDFTVGLSPE--TLRKTSLI 148 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAV----NGV----cLTV~~i~~~~~~F~v~lipE--TL~~T~L~ 148 (282)
..+|.++++...+..++++..+. ......+|..|.+ +|- .+|+.+...+.+.+++.+-.+ =.-..-|.
T Consensus 13 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~~S~~l~ 92 (243)
T 2eix_A 13 KFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYID 92 (243)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCHHHHHHH
T ss_pred EEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCCcchHhh
Confidence 45677776654445667777542 1234688988776 453 447766643224566665432 22223355
Q ss_pred CCCCCCeeeccCC
Q 023449 149 ELEPGSLVNLERA 161 (282)
Q Consensus 149 ~lkvGd~VNLE~a 161 (282)
++++||.|.++-+
T Consensus 93 ~l~~Gd~v~v~gP 105 (243)
T 2eix_A 93 HLNPGDFLQVRGP 105 (243)
T ss_dssp TCCTTCEEEEEEE
T ss_pred cCCCCCEEEEECC
Confidence 7899999999865
No 16
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=38.85 E-value=1.1e+02 Score=25.50 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=45.3
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc--cccceeeeecEEE----cce----eeeeeeeeCCCcEEEEEeehh--hhhhhcC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS--LLKYIVPKGFIAI----DGT----SLTVVDVFDEEECFNFMLVAY--TQQKVVI 246 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~--l~~yiv~KGSIav----DGi----SLTI~~v~~~~~~f~V~LIP~--Tl~~T~l 246 (282)
.++|++++.. .+...++|+.|.. ...| .+-.+|.| +|- .+|+.+...+.+.+++.+--+ =.-..-|
T Consensus 13 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~-~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~~S~~l 91 (243)
T 2eix_A 13 KFMLREKQIINHNTRLFRFNLHHPEDVVGL-PIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYI 91 (243)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCC-CTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCHHHHHH
T ss_pred EEEEEEEEEeCCCeEEEEEEcCCCCcccCc-CCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCCcchHh
Confidence 5778887765 5677889988752 2222 22223333 453 457776643334555555432 2222335
Q ss_pred CCCcCCCEeEEe
Q 023449 247 PLKKVGQKVNLE 258 (282)
Q Consensus 247 ~~~kvGd~VNiE 258 (282)
..+++||.|.|+
T Consensus 92 ~~l~~Gd~v~v~ 103 (243)
T 2eix_A 92 DHLNPGDFLQVR 103 (243)
T ss_dssp HTCCTTCEEEEE
T ss_pred hcCCCCCEEEEE
Confidence 678999999886
No 17
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=38.06 E-value=81 Score=28.01 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=52.0
Q ss_pred ccEEEEEEEEeCCCCcEEEEEecCcc--cCCCccCCcEEEc--c----eeeeceEEcCCcceEEEEeeHH--HHhhccC-
Q 023449 79 EEMGEIEQLGASNDGGFVMKIRAKTV--LEGVHLGDSIAVN--G----TCLTVTEFGTQLEDFTVGLSPE--TLRKTSL- 147 (282)
Q Consensus 79 d~~G~I~si~~~~~~~~~l~I~~~~~--l~~i~~ggSIAVN--G----VcLTV~~i~~~~~~F~v~lipE--TL~~T~L- 147 (282)
...++|.+++...++-++|++..+.. .....+|..|.+. | =.+|+.+... .+.+++.+-.+ =.-...|
T Consensus 108 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~~S~~L~ 186 (338)
T 1krh_A 108 HFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTTETRSYSFSSQPG-NRLTGFVVRNVPQGKMSEYLS 186 (338)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTSSCEEEEECCSCTT-CSEEEEEEECCTTCHHHHHHH
T ss_pred EEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCCCccccccccCCCC-CCeEEEEEEEcCCCCchhhHh
Confidence 34678999887655567788875532 2346788887763 3 3677776642 14555554332 2223345
Q ss_pred CCCCCCCeeeccCC
Q 023449 148 IELEPGSLVNLERA 161 (282)
Q Consensus 148 ~~lkvGd~VNLE~a 161 (282)
..+++||.|.++-+
T Consensus 187 ~~l~~Gd~v~v~gP 200 (338)
T 1krh_A 187 VQAKAGDKMSFTGP 200 (338)
T ss_dssp TTCCTTCEEEEEEE
T ss_pred hccCCCCEEEEECC
Confidence 57999999999865
No 18
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.80 E-value=34 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=25.2
Q ss_pred EEEEecCcc--cCCCccCCcEEEcceeeeceEEcC
Q 023449 96 VMKIRAKTV--LEGVHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 96 ~l~I~~~~~--l~~i~~ggSIAVNGVcLTV~~i~~ 128 (282)
.+.+.+... .+.+++|.+||+|--+++|.++-.
T Consensus 61 ~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp 95 (109)
T 2wg5_A 61 KFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 95 (109)
T ss_dssp EEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC
T ss_pred EEEEEcccccCHHHCCCCCEEEECCcceEeEEeCC
Confidence 444554332 357999999999999999999865
No 19
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=35.36 E-value=1.2e+02 Score=25.82 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=46.9
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEEc--c------eeeeeeeeeCCCcEEEEEeeh--hhhhhhcCCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAID--G------TSLTVVDVFDEEECFNFMLVA--YTQQKVVIPL 248 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIavD--G------iSLTI~~v~~~~~~f~V~LIP--~Tl~~T~l~~ 248 (282)
.++|++++.. .+.+.++|+.|.....| .+-.+|.|. + =.+||.+....++.+++.+-- .=.-..-|..
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~-~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l~~ 85 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMD-LPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSK 85 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCC-STTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHHHT
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccC-CCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHHhc
Confidence 4678887755 67888999887632232 233444442 1 368888775323445554443 3333334567
Q ss_pred CcCCCEeEEe
Q 023449 249 KKVGQKVNLE 258 (282)
Q Consensus 249 ~kvGd~VNiE 258 (282)
+++||.|.|+
T Consensus 86 l~~Gd~v~v~ 95 (262)
T 1ep3_B 86 LESGAKVDVM 95 (262)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999999886
No 20
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=34.70 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=6% Similarity=-0.058 Sum_probs=24.6
Q ss_pred EEEEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEE
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAV 116 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAV 116 (282)
.++|.+++....+-++|++..+. .+ ...+|..|.+
T Consensus 11 ~~~V~~~~~~t~~~~~l~l~~~~~~~~-~~~pGQ~v~l 47 (290)
T 2r6h_A 11 ECEVLSNKNVSTFIKEFVVKLPEGETM-NFKSGSYAQI 47 (290)
T ss_dssp EEEEEEEEESSSSEEEEEEECSTTCCC-CCCTTCEEEE
T ss_pred EEEEEEeeecCCCeEEEEEEcCCCCcc-ccCCCceEEE
Confidence 46788888765556778887643 23 3788998877
No 21
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=33.40 E-value=80 Score=27.04 Aligned_cols=80 Identities=8% Similarity=0.002 Sum_probs=50.7
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccC--CCccCCcEEEc-----c----eeeeceEEcCCcceEEEEeeHH---HHhhcc
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLE--GVHLGDSIAVN-----G----TCLTVTEFGTQLEDFTVGLSPE---TLRKTS 146 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~--~i~~ggSIAVN-----G----VcLTV~~i~~~~~~F~v~lipE---TL~~T~ 146 (282)
..+|.+++....+-++|++..+.... ...+|..|.+- | =++|+.+... +.+++++.-+ -.-..-
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~~G~~S~~ 87 (252)
T 2gpj_A 10 ELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDTDGPASSW 87 (252)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSSCCHHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCCCCcHHHH
Confidence 45777777654446788888654333 26889988872 1 3567777654 4666654422 223334
Q ss_pred CCCCCCCCeeeccCCC
Q 023449 147 LIELEPGSLVNLERAV 162 (282)
Q Consensus 147 L~~lkvGd~VNLE~al 162 (282)
|.++++||.|.+.-+.
T Consensus 88 l~~l~~Gd~l~v~gP~ 103 (252)
T 2gpj_A 88 AKTAQVGELIQIGGPG 103 (252)
T ss_dssp HHHCCTTCEEEEEEEE
T ss_pred HhhCCCCCEEEEecCC
Confidence 5579999999998763
No 22
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=33.36 E-value=83 Score=26.83 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----ce----eeeceEEcCCcceEEEEeeHH--HHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----GT----CLTVTEFGTQLEDFTVGLSPE--TLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----GV----cLTV~~i~~~~~~F~v~lipE--TL~~T~L~~l 150 (282)
.++|.++++..++-+++++..+... ...+|..|.+. |- .+|+.+...+ +.+++.+... -.-..-|.++
T Consensus 21 ~~~V~~~~~~~~~~~~~~l~~~~~~-~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~~v~~~~~G~~s~~l~~l 98 (271)
T 4fk8_A 21 TATVLSVHHWTDTLFSFTCTRDQAL-RFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE-EHLEFFSIKVQNGPLTSRLQHL 98 (271)
T ss_dssp EEEEEEEEEEETTEEEEEECCCTTC-CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SSEEEEEECCTTCTTHHHHTTC
T ss_pred eEEEEEEEEcCCCEEEEEEEcCCCC-CcCCCCEEEEEccCCCceeeeeEeccCCCCC-CcEEEEEEEECCCchhhHHhcC
Confidence 4567777765444678888765432 46788887763 42 4677665421 4566555443 2222345689
Q ss_pred CCCCeeecc-CC
Q 023449 151 EPGSLVNLE-RA 161 (282)
Q Consensus 151 kvGd~VNLE-~a 161 (282)
++||.|.++ -+
T Consensus 99 ~~Gd~v~v~~gP 110 (271)
T 4fk8_A 99 KVGDPVLIGKKP 110 (271)
T ss_dssp CTTCEEEEESCC
T ss_pred CCCCEEEEecCC
Confidence 999999998 55
No 23
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=32.30 E-value=1.1e+02 Score=25.95 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=46.2
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc--cccceeeeecEEE----cce----eeeeeeeeCCCcEEEEEeehh---------
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS--LLKYIVPKGFIAI----DGT----SLTVVDVFDEEECFNFMLVAY--------- 239 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~--l~~yiv~KGSIav----DGi----SLTI~~v~~~~~~f~V~LIP~--------- 239 (282)
.++|++++.. .+...++|+.|.. ...| .+-.+|.| +|- .+||.....+.+.+++.+--+
T Consensus 18 ~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~-~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~ 96 (275)
T 1umk_A 18 PLRLIDREIISHDTRRFRFALPSPQHILGL-PVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFP 96 (275)
T ss_dssp EEEEEEEEECSSSEEEEEEECSSTTCBCCC-CTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBT
T ss_pred EEEEEEEEEcCCCeEEEEEEcCCcccccCC-CCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccC
Confidence 5778888866 5677889998753 2233 23333433 452 667776643235566665533
Q ss_pred --hhhhhcCCCCcCCCEeEEe
Q 023449 240 --TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 240 --Tl~~T~l~~~kvGd~VNiE 258 (282)
=.-..-|..+++||.|.|+
T Consensus 97 ~~G~~S~~L~~l~~Gd~v~v~ 117 (275)
T 1umk_A 97 AGGKMSQYLESMQIGDTIEFR 117 (275)
T ss_dssp TCCHHHHHHHHCCTTCEEEEE
T ss_pred CCChhHHHHhcCCCCCEEEEE
Confidence 2222334568899999885
No 24
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=31.84 E-value=94 Score=26.49 Aligned_cols=81 Identities=9% Similarity=0.034 Sum_probs=49.0
Q ss_pred EEEEEEEEeCCCCcEEEEEecCc--ccCCCccCCcEEEc----ce----eeeceEEcCCcceEEEEeeHH----------
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKT--VLEGVHLGDSIAVN----GT----CLTVTEFGTQLEDFTVGLSPE---------- 140 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~--~l~~i~~ggSIAVN----GV----cLTV~~i~~~~~~F~v~lipE---------- 140 (282)
..+|.+++....+..++++..+. ......+|..|.+. |- .+|+.+...+.+.+++.+-.+
T Consensus 18 ~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~ 97 (275)
T 1umk_A 18 PLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPA 97 (275)
T ss_dssp EEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTT
T ss_pred EEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccCC
Confidence 46788888765556677777542 12346889988763 52 566666543225666665433
Q ss_pred -HHhhccCCCCCCCCeeeccCC
Q 023449 141 -TLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 141 -TL~~T~L~~lkvGd~VNLE~a 161 (282)
=.-..-|.++++||.|.++-+
T Consensus 98 ~G~~S~~L~~l~~Gd~v~v~gP 119 (275)
T 1umk_A 98 GGKMSQYLESMQIGDTIEFRGP 119 (275)
T ss_dssp CCHHHHHHHHCCTTCEEEEEEE
T ss_pred CChhHHHHhcCCCCCEEEEEcC
Confidence 222223446889999888755
No 25
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=31.73 E-value=1.3e+02 Score=26.57 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=47.7
Q ss_pred EEEEeEEEec-CCEEEEEEEeCccc--ccceeeeecEEE---cc--eeeeeeeeeCCCcEEEEEee--hhhh-hhhcCC-
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSL--LKYIVPKGFIAI---DG--TSLTVVDVFDEEECFNFMLV--AYTQ-QKVVIP- 247 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l--~~yiv~KGSIav---DG--iSLTI~~v~~~~~~f~V~LI--P~Tl-~~T~l~- 247 (282)
.++|.+++.. .+.+.++|+.|... ..| -+-.+|.| || =++||.+.....+.+++.+- |.-. -..-|.
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~-~pGQ~v~l~~~~g~~R~ySi~s~~~~~~~l~i~Vk~~~~G~g~S~~L~~ 88 (321)
T 2pia_A 10 RLKIASKEKIARDIWSFELTDPQGAPLPPF-EAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFID 88 (321)
T ss_dssp EEEEEEEEEEETTEEEEEEECTTCCCCCCC-CTTCEEEEECTTSCEEEEECCSCTTCCSEEEEEEECCTTSCSHHHHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEcCCCCcCCCC-CCCCEEEEECCCCCcEEEEeCCCCCCCCeEEEEEEEecCCcchhHHHHh
Confidence 4678877755 67888999987642 222 24444544 33 36788776533345665555 4322 222344
Q ss_pred CCcCCCEeEEeh
Q 023449 248 LKKVGQKVNLEV 259 (282)
Q Consensus 248 ~~kvGd~VNiE~ 259 (282)
.+++||.|.|+-
T Consensus 89 ~l~~Gd~v~v~g 100 (321)
T 2pia_A 89 DTSEGDAVEVSL 100 (321)
T ss_dssp SCCTTCEEEECC
T ss_pred cCCCCCEEEEeC
Confidence 789999998863
No 26
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=31.66 E-value=1.6e+02 Score=25.13 Aligned_cols=22 Identities=14% Similarity=-0.124 Sum_probs=16.8
Q ss_pred EEEEeEEEec-CCEEEEEEEeCc
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDK 201 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~ 201 (282)
.++|++++.. .+.++++|+.|+
T Consensus 11 ~~~V~~~~~~t~~~~~l~l~~~~ 33 (290)
T 2r6h_A 11 ECEVLSNKNVSTFIKEFVVKLPE 33 (290)
T ss_dssp EEEEEEEEESSSSEEEEEEECST
T ss_pred EEEEEEeeecCCCeEEEEEEcCC
Confidence 4688888866 567888998875
No 27
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=31.40 E-value=1.8e+02 Score=24.81 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=48.2
Q ss_pred eEEEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE-----cc----eeeeeeeeeCCCcEEEEEeehh--hhhhhc
Q 023449 178 DGTGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI-----DG----TSLTVVDVFDEEECFNFMLVAY--TQQKVV 245 (282)
Q Consensus 178 Dg~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav-----DG----iSLTI~~v~~~~~~f~V~LIP~--Tl~~T~ 245 (282)
...++|++++.. .+.+.++++.|+.+ .| .+-.+|.| || =.+||.+... ++.+++.+..+ -.-..-
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~~~~-~~-~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~-~~~~~l~v~~~~~G~~s~~ 92 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRPQTL-RF-RSGEFVMIGLLDDNGKPIMRAYSIASPAW-DEELEFYSIKVPDGPLTSR 92 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCTTC-CC-CTTCEEEEEEECTTSCEEEEEEECCSCTT-CSEEEEEEECCTTCTTHHH
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCCCCC-cc-CCCCEEEEEeccCCCCeeeeeeeeccCCC-CCeEEEEEEEccCCCchhH
Confidence 345788888755 67788888877543 32 23333332 34 3678877653 35676665543 333334
Q ss_pred CCCCcCCCEeEEe
Q 023449 246 IPLKKVGQKVNLE 258 (282)
Q Consensus 246 l~~~kvGd~VNiE 258 (282)
|..+++||.|.|+
T Consensus 93 l~~l~~Gd~v~v~ 105 (272)
T 2bgi_A 93 LQHIKVGEQIILR 105 (272)
T ss_dssp HTTCCTTCEEEEE
T ss_pred HHhCCCCCEEEEe
Confidence 5679999999987
No 28
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=30.85 E-value=1.4e+02 Score=26.15 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=47.0
Q ss_pred EEEEEeEEEecC------CEEEEEEEeCcccccceeeeecEEEc--ce----------eeeeeeeeC----CCcEEEEEe
Q 023449 179 GTGVIVSMEPEE------DSLWIKVKTDKSLLKYIVPKGFIAID--GT----------SLTVVDVFD----EEECFNFML 236 (282)
Q Consensus 179 g~g~I~~i~~~~------~~~~~~i~~p~~l~~yiv~KGSIavD--Gi----------SLTI~~v~~----~~~~f~V~L 236 (282)
-.++|++++... +.+.++|+.|.. .+| .+-.+|.|- |+ .+||++... ..+.+++.+
T Consensus 34 ~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~-~~~-~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V 111 (310)
T 3vo2_A 34 YVGRCLSNTRITGDDAPGETWHMVFSTEGE-IPY-REGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCV 111 (310)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCC-CTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEE
T ss_pred EEEEEEEEEEccCCCCCccEEEEEEeCCCC-Ccc-cCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEE
Confidence 367777777653 388899997654 344 355566652 32 578887642 134455554
Q ss_pred ehh-----------hhhhhcCCCCcCCCEeEEe
Q 023449 237 VAY-----------TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 237 IP~-----------Tl~~T~l~~~kvGd~VNiE 258 (282)
--+ =.-..-|..+++||.|.|+
T Consensus 112 k~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 144 (310)
T 3vo2_A 112 KRLVYTNDQGEIVKGVCSNFLCDLKPGADVKIT 144 (310)
T ss_dssp ECCEEECTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred EEEEeccCCCCcCCcchhhHHhcCCCCCEEEEE
Confidence 432 2223345568999999887
No 29
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=30.63 E-value=1.4e+02 Score=25.30 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=44.2
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcc--cccceeeeecEE----Ecce----eeeeeeeeCCCcEEEEEeehh---------
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKS--LLKYIVPKGFIA----IDGT----SLTVVDVFDEEECFNFMLVAY--------- 239 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~--l~~yiv~KGSIa----vDGi----SLTI~~v~~~~~~f~V~LIP~--------- 239 (282)
.++|++++.. .+.+.++|+.|.. ...| -+-.+|. .+|- .+||.+..+..+.+++.+--.
T Consensus 14 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~ 92 (270)
T 2cnd_A 14 HCRLVAKKELSRDVRLFRFSLPSPDQVLGL-PIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFP 92 (270)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCC-CTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBT
T ss_pred EEEEEEEEEeCCCeEEEEEECCCCccccCC-CCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccC
Confidence 4678887755 6778899998753 2222 1222232 2453 578877543234566555421
Q ss_pred --hhhhhcCCCCcCCCEeEEe
Q 023449 240 --TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 240 --Tl~~T~l~~~kvGd~VNiE 258 (282)
=.-..-|..+++||.|.|+
T Consensus 93 ~~G~~s~~l~~l~~Gd~v~v~ 113 (270)
T 2cnd_A 93 NGGLMTQYLDSLPVGSYIDVK 113 (270)
T ss_dssp TCCHHHHHHHHCCTTCEEEEE
T ss_pred CCCchhhHHhcCCCCCEEEEE
Confidence 1112224568899999876
No 30
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=30.29 E-value=27 Score=28.60 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.8
Q ss_pred CCccCCceEeEEEeEEEEEeEEEecC
Q 023449 165 TSRMGGHFVQGHVDGTGVIVSMEPEE 190 (282)
Q Consensus 165 gdrlGGH~V~GHVDg~g~I~~i~~~~ 190 (282)
|..+|||++.|-|..+++|.=.+-.+
T Consensus 105 G~v~gGHl~~g~V~~t~Ei~i~~~~~ 130 (149)
T 3htn_A 105 YSALAGHLLSAIQNGAGEFVVEDYSE 130 (149)
T ss_dssp SBEEEEEEEEEEEEEEEEEEEEECCS
T ss_pred CCEEeEEeCCCEEEEEEEEEEEEcCC
Confidence 56789999999999999987654444
No 31
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=29.94 E-value=1.8e+02 Score=25.63 Aligned_cols=78 Identities=13% Similarity=0.238 Sum_probs=48.2
Q ss_pred EEEEEeEEEec-CCEEEEEEEeCcc--cccceeeeecEEE--cc----eeeeeeeeeCCCcEEEE--EeehhhhhhhcC-
Q 023449 179 GTGVIVSMEPE-EDSLWIKVKTDKS--LLKYIVPKGFIAI--DG----TSLTVVDVFDEEECFNF--MLVAYTQQKVVI- 246 (282)
Q Consensus 179 g~g~I~~i~~~-~~~~~~~i~~p~~--l~~yiv~KGSIav--DG----iSLTI~~v~~~~~~f~V--~LIP~Tl~~T~l- 246 (282)
..++|++++.. .+.+.++|+.|.. ...| .+-.+|.| +| =++||++..+ ++.+++ ...|.=.-..-|
T Consensus 109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~-~pGQ~v~l~~~~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~~S~~L~ 186 (338)
T 1krh_A 109 FEGTLARVENLSDSTITFDIQLDDGQPDIHF-LAGQYVNVTLPGTTETRSYSFSSQPG-NRLTGFVVRNVPQGKMSEYLS 186 (338)
T ss_dssp EEEEEEEEEESSSSEEEEEEEECTTCCCCCC-CTTCEEEEECTTSSCEEEEECCSCTT-CSEEEEEEECCTTCHHHHHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCc-CCCCeEEEEcCCCCccccccccCCCC-CCeEEEEEEEcCCCCchhhHh
Confidence 36788888765 6678899998863 2333 23333433 33 4788887653 344444 444433333445
Q ss_pred CCCcCCCEeEEe
Q 023449 247 PLKKVGQKVNLE 258 (282)
Q Consensus 247 ~~~kvGd~VNiE 258 (282)
..+++||.|.|+
T Consensus 187 ~~l~~Gd~v~v~ 198 (338)
T 1krh_A 187 VQAKAGDKMSFT 198 (338)
T ss_dssp TTCCTTCEEEEE
T ss_pred hccCCCCEEEEE
Confidence 678999999887
No 32
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=28.59 E-value=96 Score=25.92 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=46.7
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc----c----eeeeceEEcCCcceEEEEee--HHHHhhccCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN----G----TCLTVTEFGTQLEDFTVGLS--PETLRKTSLIEL 150 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN----G----VcLTV~~i~~~~~~F~v~li--pETL~~T~L~~l 150 (282)
.++|.++++..++-++|++.++. + ...+|..|.+. | =.+|+.+...+ +.+++.+. +.=.-..-|.++
T Consensus 6 ~~~V~~~~~~~~~~~~l~l~~~~-~-~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~~s~~l~~l 82 (248)
T 1fdr_A 6 TGKVTKVQNWTDALFSLTVHAPV-L-PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLSPRLAAL 82 (248)
T ss_dssp EEEEEEEEECSSSEEEEEEECCC-C-CCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECCTTCSSHHHHHTC
T ss_pred EEEEEEEEEcCCCEEEEEEeCCC-C-CcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEeCCCchhhHHHhC
Confidence 46788888765556777776432 2 46788887663 4 36777766432 45555543 222222224568
Q ss_pred CCCCeeecc
Q 023449 151 EPGSLVNLE 159 (282)
Q Consensus 151 kvGd~VNLE 159 (282)
++||.|.++
T Consensus 83 ~~Gd~v~v~ 91 (248)
T 1fdr_A 83 KPGDEVQVV 91 (248)
T ss_dssp CTTCEEEEE
T ss_pred CCcCEEEEe
Confidence 999999997
No 33
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=28.38 E-value=99 Score=26.19 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=46.9
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcc--cCCCccCCcEEE----cce----eeeceEEcCCcceEEEEeeHH----------
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTV--LEGVHLGDSIAV----NGT----CLTVTEFGTQLEDFTVGLSPE---------- 140 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~--l~~i~~ggSIAV----NGV----cLTV~~i~~~~~~F~v~lipE---------- 140 (282)
.++|.++++...+.+++++..+.. .....+|..|.+ +|- .+|+.+...+.+.+++.+-..
T Consensus 14 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~ 93 (270)
T 2cnd_A 14 HCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPN 93 (270)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBTT
T ss_pred EEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccCC
Confidence 356777766544466788875431 224688997766 453 567776543114555554321
Q ss_pred -HHhhccCCCCCCCCeeeccCC
Q 023449 141 -TLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 141 -TL~~T~L~~lkvGd~VNLE~a 161 (282)
=.-..-|.++++||.|.++-+
T Consensus 94 ~G~~s~~l~~l~~Gd~v~v~gP 115 (270)
T 2cnd_A 94 GGLMTQYLDSLPVGSYIDVKGP 115 (270)
T ss_dssp CCHHHHHHHHCCTTCEEEEEEE
T ss_pred CCchhhHHhcCCCCCEEEEECC
Confidence 111122456899999988765
No 34
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=27.57 E-value=2.1e+02 Score=23.96 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=45.6
Q ss_pred EEEEeEEEec-CCEEEEEEEeCcccccceeeeecEEE----cc----eeeeeeeeeCCCcEEEEEeehh--hhhhhcCCC
Q 023449 180 TGVIVSMEPE-EDSLWIKVKTDKSLLKYIVPKGFIAI----DG----TSLTVVDVFDEEECFNFMLVAY--TQQKVVIPL 248 (282)
Q Consensus 180 ~g~I~~i~~~-~~~~~~~i~~p~~l~~yiv~KGSIav----DG----iSLTI~~v~~~~~~f~V~LIP~--Tl~~T~l~~ 248 (282)
.++|++++.. .+-+.++++.|+.+ .| .+-.+|.| +| =.+||++... ++.+++.+.-+ =.-..-|..
T Consensus 5 ~~~V~~~~~~~~~~~~l~l~~~~~~-~~-~pGq~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~~i~~~~~G~~s~~l~~ 81 (257)
T 2qdx_A 5 TERVLSVHHWNDTLFSFKTTRNPGL-RF-KTGQFVMIGLEVDGRPLMRAYSIASPNY-EEHLEFFSIKVPDGPLTSRLQH 81 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTC-CC-CTTCEEEEEEEETTEEEEEEEECCSCTT-SSEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEcCCCeEEEEEeCCCCC-cc-CCCCEEEEEecCCCCceeeeeEeecCCC-CCeEEEEEEEeCCCcchhHHHh
Confidence 4677777755 67788888877532 22 23333332 34 3668877653 35566655433 322334567
Q ss_pred CcCCCEeEEe
Q 023449 249 KKVGQKVNLE 258 (282)
Q Consensus 249 ~kvGd~VNiE 258 (282)
+++||.|.|+
T Consensus 82 l~~Gd~v~v~ 91 (257)
T 2qdx_A 82 LKEGDELMVS 91 (257)
T ss_dssp CCTTCEEEEC
T ss_pred CCCCCEEEEe
Confidence 8999999987
No 35
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=25.97 E-value=1.6e+02 Score=25.78 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=45.9
Q ss_pred EEEEeEEEecC------CEEEEEEEeCcccccceeeeecEEEc-------c-----eeeeeeeeeC----CCcEEEEEee
Q 023449 180 TGVIVSMEPEE------DSLWIKVKTDKSLLKYIVPKGFIAID-------G-----TSLTVVDVFD----EEECFNFMLV 237 (282)
Q Consensus 180 ~g~I~~i~~~~------~~~~~~i~~p~~l~~yiv~KGSIavD-------G-----iSLTI~~v~~----~~~~f~V~LI 237 (282)
.++|++++... +.+.++|+.|.. ..| -+-.+|.|. | =.+||++... ..+.+++.+-
T Consensus 39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~-~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk 116 (314)
T 1fnb_A 39 VGRCLLNTKITGDDAPGETWHMVFSHEGE-IPY-REGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVK 116 (314)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTC-CCC-CTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEE
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCC-CCc-CCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEE
Confidence 46788887765 688899998865 344 355555552 2 2588877642 1244555443
Q ss_pred hh-----------hhhhhcCCCCcCCCEeEEe
Q 023449 238 AY-----------TQQKVVIPLKKVGQKVNLE 258 (282)
Q Consensus 238 P~-----------Tl~~T~l~~~kvGd~VNiE 258 (282)
-+ =.-..-|..+++||.|.|+
T Consensus 117 ~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~ 148 (314)
T 1fnb_A 117 RLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148 (314)
T ss_dssp CCEEECTTSCEEECHHHHHHHHCCTTCEEEEE
T ss_pred EEEeccCCCCcCCCchhhHhhcCCCCCEEEEE
Confidence 21 1112224448899999887
No 36
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=25.11 E-value=62 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=19.1
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..|||.++++
T Consensus 54 P~~Gd~v~~~~~~f~V~~~~~ 74 (86)
T 2pls_A 54 PQTGDITFWENWRLEVIDMDS 74 (86)
T ss_dssp CCTTCEEEETTEEEEEEEEET
T ss_pred CCCCCEEEECCEEEEEEEeeC
Confidence 367999999999999999987
No 37
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=25.09 E-value=63 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..+||.++++
T Consensus 50 P~~Gd~v~~~~~~f~V~~~~~ 70 (81)
T 3lae_A 50 PDEGTICEIDGLLITILEVGD 70 (81)
T ss_dssp CCTTCEEEETTEEEEEEEEET
T ss_pred CCCCCEEEECCEEEEEEEeeC
Confidence 567999999999999999987
No 38
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=24.37 E-value=41 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.9
Q ss_pred CCccCCceEeEEEe-EEEEEeEE
Q 023449 165 TSRMGGHFVQGHVD-GTGVIVSM 186 (282)
Q Consensus 165 gdrlGGH~V~GHVD-g~g~I~~i 186 (282)
|..+|||++.|-|- ++++|+=.
T Consensus 101 g~v~GGHL~~g~V~~~t~Ei~i~ 123 (147)
T 3hwu_A 101 FQGAGGHLLGLTVGTGSCEITVT 123 (147)
T ss_dssp CCEEEEEEEEEEEEEEEEEEEEE
T ss_pred CcEEeeEecCcEEEeEeEEEEEE
Confidence 67899999999988 48887544
No 39
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.34 E-value=63 Score=28.64 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=37.2
Q ss_pred CCccCCcEEEcce---eeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEE
Q 023449 107 GVHLGDSIAVNGT---CLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTG 181 (282)
Q Consensus 107 ~i~~ggSIAVNGV---cLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g 181 (282)
.+..|+.|.-... =+++.+.+. -++.+++- ...+..+++|+.|.+..+-..+..+ .|+|..+.
T Consensus 168 ~~~~G~~v~~g~~~~~l~~i~~~~~--l~v~~~v~-----e~~~~~v~~G~~v~v~~~~~~~~~~-----~g~V~~i~ 233 (341)
T 3fpp_A 168 TTLQGQTVIAAQQAPNILTLADMSA--MLVKAQVS-----EADVIHLKPGQKAWFTVLGDQLTRY-----EGQIKDVL 233 (341)
T ss_dssp SSCTTCEECCTTSCCCCEEEECCSE--EEEEEECC-----GGGSTTCCTTCCCEECCSSSSSSCB-----CCCEEEEC
T ss_pred ecCCCCEEecCCCCceEEEEecCCc--EEEEEEEC-----HHHHhhCCCCCEEEEEEecCCCCEE-----EEEEEEEe
Confidence 4566776655433 345554444 45555543 3457889999999998765444444 55555444
No 40
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=23.29 E-value=1.4e+02 Score=26.13 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred EEEEEEEEeCCC-----CcEEEEEecCcccCCCccCCcEEEc-------c-----eeeeceEEcC----CcceEEEEeeH
Q 023449 81 MGEIEQLGASND-----GGFVMKIRAKTVLEGVHLGDSIAVN-------G-----TCLTVTEFGT----QLEDFTVGLSP 139 (282)
Q Consensus 81 ~G~I~si~~~~~-----~~~~l~I~~~~~l~~i~~ggSIAVN-------G-----VcLTV~~i~~----~~~~F~v~lip 139 (282)
.++|.+++.... ..++|++..+..+ ...+|+.|.|. | =.+|+.+... +.+.+++.+-.
T Consensus 39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~-~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~ 117 (314)
T 1fnb_A 39 VGRCLLNTKITGDDAPGETWHMVFSHEGEI-PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKR 117 (314)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTCC-CCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCC-CcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEE
Confidence 467888877642 3677888765433 35899998872 3 2577776532 01455554432
Q ss_pred H-----------HHhhccCCCCCCCCeeeccCC
Q 023449 140 E-----------TLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 140 E-----------TL~~T~L~~lkvGd~VNLE~a 161 (282)
. =.-..-|..+++||.|.++-+
T Consensus 118 ~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP 150 (314)
T 1fnb_A 118 LIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGP 150 (314)
T ss_dssp CEEECTTSCEEECHHHHHHHHCCTTCEEEEEEE
T ss_pred EEeccCCCCcCCCchhhHhhcCCCCCEEEEEec
Confidence 1 111122445899999999865
No 41
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=23.01 E-value=70 Score=23.17 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=19.4
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..++|.++++
T Consensus 50 P~~Gd~v~~~~~~f~V~~~~~ 70 (83)
T 3llb_A 50 PKRNEVVELGEFRFRVLNADS 70 (83)
T ss_dssp CCTTCEEEETTEEEEEEEECS
T ss_pred CCCCCEEEECCEEEEEEEeeC
Confidence 478999999999999999987
No 42
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=22.94 E-value=53 Score=27.24 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=49.1
Q ss_pred EEEEEEEEeCCCCcEEEEEecCcccCCCccCCcEEEc---c--eeeeceEEcCCcceEEEEeeHHH--Hhhc-cCCCCCC
Q 023449 81 MGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVN---G--TCLTVTEFGTQLEDFTVGLSPET--LRKT-SLIELEP 152 (282)
Q Consensus 81 ~G~I~si~~~~~~~~~l~I~~~~~l~~i~~ggSIAVN---G--VcLTV~~i~~~~~~F~v~lipET--L~~T-~L~~lkv 152 (282)
.++|.++++..++-+++++..+..+ ...+|..|.+. + =.+|+.+...+.+.+++.+-.+- ...| -+..+++
T Consensus 4 ~~~V~~~~~~~~~~~~l~l~~~~~~-~~~pGq~v~l~~~~~~~R~ySi~s~~~~~~~l~l~i~~~~~G~~s~~~~~~l~~ 82 (232)
T 1qfj_A 4 SCKVTSVEAITDTVYRVRIVPDAAF-SFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILK 82 (232)
T ss_dssp EEEEEEEEESSSSCEEEEEEESSCC-CCCTTCEEEEESSSSCEEEEECCSCTTSTTCEEEEEC------CCHHHHHHHHH
T ss_pred EEEEEEEEecCCCEEEEEEecCCCC-CcCCCCEEEEECCCCceeeeecCCCCCCCCcEEEEEEEccCCchhHHHHHhCCC
Confidence 4688888876555678888765433 56889988874 2 36777766432135555544321 1112 1456789
Q ss_pred CCeeeccCC
Q 023449 153 GSLVNLERA 161 (282)
Q Consensus 153 Gd~VNLE~a 161 (282)
||.|.++-+
T Consensus 83 Gd~v~v~gP 91 (232)
T 1qfj_A 83 DHQIVVDIP 91 (232)
T ss_dssp HSEEEEEEE
T ss_pred CCEEEEeCC
Confidence 999999865
No 43
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=22.25 E-value=41 Score=28.45 Aligned_cols=80 Identities=8% Similarity=0.056 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCcEEEEEec-C-cc---cCCCccCCcEEEc--c----eeeeceEEcCCcceEEEEeeHH--HHhhccC-
Q 023449 82 GEIEQLGASNDGGFVMKIRA-K-TV---LEGVHLGDSIAVN--G----TCLTVTEFGTQLEDFTVGLSPE--TLRKTSL- 147 (282)
Q Consensus 82 G~I~si~~~~~~~~~l~I~~-~-~~---l~~i~~ggSIAVN--G----VcLTV~~i~~~~~~F~v~lipE--TL~~T~L- 147 (282)
++|.++++..++.++|++.. + .. .....+|..|.+. | =.+|+.+...+.+.+++.+-.+ -.-..-|
T Consensus 13 ~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~i~vk~~~~G~~s~~l~ 92 (250)
T 1tvc_A 13 AEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLR 92 (250)
T ss_dssp EEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCSSSEEECCBCCSSSSCCEEEEECCCTTSSSHHHHH
T ss_pred EEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCCCccccccccCCCCCCCCeEEEEEEECCCCCchHHHH
Confidence 45555554433467788876 5 42 2356889988774 3 3778877653115566665433 2212224
Q ss_pred CCCCCCCeeeccCC
Q 023449 148 IELEPGSLVNLERA 161 (282)
Q Consensus 148 ~~lkvGd~VNLE~a 161 (282)
.++++||.|.++-+
T Consensus 93 ~~l~~Gd~v~v~gP 106 (250)
T 1tvc_A 93 NDARVGQVLSVKGP 106 (250)
T ss_dssp HHSSSSSEEEEEEE
T ss_pred hcCCCCCEEEEEcC
Confidence 36889999999865
No 44
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=22.06 E-value=77 Score=23.05 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=19.1
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..|+|.++++
T Consensus 52 P~~Gd~v~~~~~~f~V~~~~~ 72 (86)
T 2p4p_A 52 PXXTDFVLYDXYXFEIIDTEN 72 (86)
T ss_dssp CCTTCEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEeeEEEEEEEccC
Confidence 367999999999999999987
No 45
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=21.98 E-value=2e+02 Score=26.56 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=49.4
Q ss_pred cEEEEEEEEeCCC-----CcEEEEEecCcccCCCccCCcEEEc-------ce-----eeeceEEcCC----cceEEEEee
Q 023449 80 EMGEIEQLGASND-----GGFVMKIRAKTVLEGVHLGDSIAVN-------GT-----CLTVTEFGTQ----LEDFTVGLS 138 (282)
Q Consensus 80 ~~G~I~si~~~~~-----~~~~l~I~~~~~l~~i~~ggSIAVN-------GV-----cLTV~~i~~~----~~~F~v~li 138 (282)
..++|.+++.... +.++|++..+...-...+|+.|.|. |- .+|+.+.... .+.+++.+-
T Consensus 123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk 202 (402)
T 2b5o_A 123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVR 202 (402)
T ss_dssp EEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEE
T ss_pred EEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEE
Confidence 3578888887653 4677888755322346889998873 32 4777765320 145555443
Q ss_pred HH------------HHhhccCCCCCCC-CeeeccCC
Q 023449 139 PE------------TLRKTSLIELEPG-SLVNLERA 161 (282)
Q Consensus 139 pE------------TL~~T~L~~lkvG-d~VNLE~a 161 (282)
.. =.-..-|..+++| |.|.|+-+
T Consensus 203 ~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP 238 (402)
T 2b5o_A 203 QLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGP 238 (402)
T ss_dssp CCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEE
T ss_pred EeeecccccCcCCCCchhHHHhhCCCCCceEEEEcc
Confidence 21 1112235568999 99999865
No 46
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=21.44 E-value=1.2e+02 Score=30.15 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.5
Q ss_pred EEEEecCcccCCCccCCcEEEc-c-eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeec
Q 023449 96 VMKIRAKTVLEGVHLGDSIAVN-G-TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNL 158 (282)
Q Consensus 96 ~l~I~~~~~l~~i~~ggSIAVN-G-VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNL 158 (282)
.+.+..+.+.+++++||.|-+| | +.|.|.++++ +.+... ..+=|.++...-||+
T Consensus 148 ~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~v~~--~~i~~~-------V~~gG~L~~~KgvNl 203 (526)
T 4drs_A 148 CISCSYSLLPKSVQIGSTVLIADGSLSTQVLEIGD--DFIVCK-------VLNSVTIGERKNMNL 203 (526)
T ss_dssp EEEBSCTTSTTTCCTTCEEEETTTTEEEEEEEECS--SEEEEE-------CCSCCEECSSCBEEC
T ss_pred eeeecchhhHHHhcCCCEEEEeCCCceEEEEEEeC--CeEEEE-------eccCccccccccccC
Confidence 4666666788899999999996 6 9999999998 665544 334455666667777
No 47
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=20.96 E-value=80 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.1
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..|+|.++++
T Consensus 59 P~~Ge~v~~~~~~f~V~~~d~ 79 (91)
T 2pli_A 59 PVRGEKVLIGGLQFTVARADN 79 (91)
T ss_dssp CCTTCEEEETTEEEEEEEECS
T ss_pred CCCCCEEEECCEEEEEEEEeC
Confidence 367999999999999999987
No 48
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=20.52 E-value=1.6e+02 Score=29.57 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=41.4
Q ss_pred EEEEEecCcccCCCccCCcEEEcc--eeeeceEE--cCCcceEEEEeeHHHHhhccCCCCCCCCeeecc
Q 023449 95 FVMKIRAKTVLEGVHLGDSIAVNG--TCLTVTEF--GTQLEDFTVGLSPETLRKTSLIELEPGSLVNLE 159 (282)
Q Consensus 95 ~~l~I~~~~~l~~i~~ggSIAVNG--VcLTV~~i--~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE 159 (282)
-++.+..+.+.+++++||.|-+|. +.|.|.++ ++ +.....+ .+=|.++...-|||-
T Consensus 103 ~~i~v~y~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~--~~i~~~v-------~~gg~l~~~KgvnlP 162 (587)
T 2e28_A 103 EKISVTYPSLIDDVSVGAKILLDDGLISLEVNAVDKQA--GEIVTTV-------LNGGVLKNKKGVNVP 162 (587)
T ss_dssp SEEEBSCTTSTTTCCTTCEEEETTTTEEEEEEEEETTT--TEEEEEC-------CSCCCBCSSCBEECT
T ss_pred CEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEecCC--CeEEEEE-------ecCCEEcCCceeecC
Confidence 356677777889999999999988 99999999 65 5555543 244566666667763
No 49
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=20.47 E-value=3.5e+02 Score=23.38 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=50.3
Q ss_pred ccEEEEEEEEeCC-----CCcEEEEEecCcccCCCccCCcEEEc--c------------eeeeceEEcCC----cceEEE
Q 023449 79 EEMGEIEQLGASN-----DGGFVMKIRAKTVLEGVHLGDSIAVN--G------------TCLTVTEFGTQ----LEDFTV 135 (282)
Q Consensus 79 d~~G~I~si~~~~-----~~~~~l~I~~~~~l~~i~~ggSIAVN--G------------VcLTV~~i~~~----~~~F~v 135 (282)
...++|.++++.. ++.++|++..+..+ ...+|..|.|. | =.+|+.+.... .+.+++
T Consensus 28 ~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~-~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l 106 (311)
T 3lo8_A 28 PFTATIVSVESLVGPKAPGETCHIVIDHGGNV-PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSL 106 (311)
T ss_dssp CEEEEEEEEEECSCTTSSSCEEEEEEECTTSS-CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEE
T ss_pred CeEEEEEeeEeccCCCCCCccEEEEEeCCCCC-cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEE
Confidence 3456788888765 44678888865432 46788887774 2 24566655321 135555
Q ss_pred Eee---------------HHHHhhccCCCCCCCCeeeccCC
Q 023449 136 GLS---------------PETLRKTSLIELEPGSLVNLERA 161 (282)
Q Consensus 136 ~li---------------pETL~~T~L~~lkvGd~VNLE~a 161 (282)
.+- +.=.-..-|.++++||.|.++-+
T Consensus 107 ~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP 147 (311)
T 3lo8_A 107 CVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGP 147 (311)
T ss_dssp EEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEE
T ss_pred EEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEec
Confidence 543 22222334556899999999865
No 50
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=20.27 E-value=86 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=19.1
Q ss_pred CccCCcEEEcceeeeceEEcC
Q 023449 108 VHLGDSIAVNGTCLTVTEFGT 128 (282)
Q Consensus 108 i~~ggSIAVNGVcLTV~~i~~ 128 (282)
-+.|++|.++|..|+|.++++
T Consensus 62 P~~Gd~v~~~~~~f~V~~~d~ 82 (94)
T 2oai_A 62 PHVGEYFDWAGWRIEIVDLDG 82 (94)
T ss_dssp CCTTCEEEETTEEEEEEEEET
T ss_pred CCCCCEEEECCEEEEEEEEcC
Confidence 367999999999999999987
No 51
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=20.05 E-value=1.4e+02 Score=26.59 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCccCCcEEEcc-eeeeceEEcCCcceEEEEeeHHHHhhccCCCCCCCCeeeccCCCCCCCccCCceEeEEEeEEEEEeE
Q 023449 107 GVHLGDSIAVNG-TCLTVTEFGTQLEDFTVGLSPETLRKTSLIELEPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVS 185 (282)
Q Consensus 107 ~i~~ggSIAVNG-VcLTV~~i~~~~~~F~v~lipETL~~T~L~~lkvGd~VNLE~al~~gdrlGGH~V~GHVDg~g~I~~ 185 (282)
++..|+.+.-.| .-+++.+.+. -++.+.+- ...+..+++|+.|.+..+-. |.-+.|+|..++...
T Consensus 185 ~~~~G~~v~~~g~~l~~i~~~~~--l~v~~~v~-----e~~~~~i~~G~~v~v~~~~~------~~~~~g~v~~i~~~~- 250 (359)
T 3lnn_A 185 NAATGAYWNDTTASLMTVADLSH--VFVTANAQ-----EKDLGHVYVGQSATVKFDAY------DDPQPGKVRYVGQIL- 250 (359)
T ss_dssp CCCBTCEECCSSCCSEEEECCSE--EEEEEEEC-----GGGSTTCCTTCEEEEBCSSC------SSCEEEEEEECCCCC-
T ss_pred ecCCCceeCCCCcceEEEecCCe--EEEEEEeC-----HHHHhhCCCCCeEEEEEcCC------CCcEEEEEEEEeccc-
Confidence 577788776634 3455555444 45555543 34578899999999986632 334477776665432
Q ss_pred EEecCCEEEEEEEeC
Q 023449 186 MEPEEDSLWIKVKTD 200 (282)
Q Consensus 186 i~~~~~~~~~~i~~p 200 (282)
......+.+++.++
T Consensus 251 -d~~~~~~~v~~~~~ 264 (359)
T 3lnn_A 251 -DADTRTTKVRMVFD 264 (359)
T ss_dssp -CTTSCCEEEEEEEE
T ss_pred -CCCCcEEEEEEEec
Confidence 22344555555554
Done!