Query 023450
Match_columns 282
No_of_seqs 124 out of 162
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.6 4.7E-16 1E-20 117.6 8.1 81 122-207 1-92 (92)
2 KOG0710 Molecular chaperone (s 99.6 2.8E-16 6.1E-21 135.8 6.0 93 114-212 78-184 (196)
3 cd06497 ACD_alphaA-crystallin_ 99.5 1E-14 2.2E-19 111.5 6.8 76 124-207 4-86 (86)
4 cd06471 ACD_LpsHSP_like Group 99.5 3.2E-14 6.9E-19 107.0 7.7 79 122-207 2-93 (93)
5 PF00011 HSP20: Hsp20/alpha cr 99.5 6.5E-14 1.4E-18 105.5 8.7 84 124-213 1-93 (102)
6 cd06478 ACD_HspB4-5-6 Alpha-cr 99.5 7.8E-14 1.7E-18 105.6 6.7 75 125-207 2-83 (83)
7 PRK10743 heat shock protein Ib 99.5 1.9E-13 4.2E-18 113.3 8.3 81 121-209 35-125 (137)
8 COG0071 IbpA Molecular chapero 99.5 3.4E-13 7.4E-18 110.2 9.6 98 107-211 24-136 (146)
9 cd06479 ACD_HspB7_like Alpha c 99.4 1.9E-13 4.1E-18 104.7 6.0 77 124-207 2-81 (81)
10 cd06475 ACD_HspB1_like Alpha c 99.4 7E-13 1.5E-17 101.4 6.7 76 123-206 3-85 (86)
11 cd06498 ACD_alphaB-crystallin_ 99.4 8.6E-13 1.9E-17 100.7 7.2 75 125-208 2-84 (84)
12 PRK11597 heat shock chaperone 99.4 9.6E-13 2.1E-17 110.3 7.8 80 122-209 34-123 (142)
13 cd06464 ACD_sHsps-like Alpha-c 99.4 1.8E-12 4E-17 92.8 6.8 78 124-207 1-88 (88)
14 cd06470 ACD_IbpA-B_like Alpha- 99.4 2.5E-12 5.5E-17 97.8 7.8 78 122-207 2-90 (90)
15 cd06476 ACD_HspB2_like Alpha c 99.3 6.5E-12 1.4E-16 96.1 7.2 76 126-207 3-83 (83)
16 cd06526 metazoan_ACD Alpha-cry 99.3 4.7E-12 1E-16 94.5 5.5 72 130-207 7-83 (83)
17 cd06477 ACD_HspB3_Like Alpha c 99.3 1.1E-11 2.4E-16 95.5 6.2 77 124-206 1-82 (83)
18 cd06481 ACD_HspB9_like Alpha c 99.2 2.7E-11 5.8E-16 92.9 6.4 75 126-207 3-87 (87)
19 cd06482 ACD_HspB10 Alpha cryst 98.9 2.9E-09 6.2E-14 82.9 6.2 72 129-206 7-86 (87)
20 cd00298 ACD_sHsps_p23-like Thi 98.9 9.1E-09 2E-13 69.8 7.5 78 125-207 1-80 (80)
21 cd06480 ACD_HspB8_like Alpha-c 98.5 2.1E-07 4.6E-12 73.4 6.4 72 128-207 13-91 (91)
22 KOG3591 Alpha crystallins [Pos 98.1 9.6E-06 2.1E-10 70.4 7.8 86 119-212 61-153 (173)
23 cd06469 p23_DYX1C1_like p23_li 98.0 5.1E-05 1.1E-09 54.7 8.4 68 125-209 1-70 (78)
24 cd06463 p23_like Proteins cont 97.7 0.00043 9.3E-09 48.7 8.7 74 125-210 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 97.5 0.00063 1.4E-08 60.4 9.2 77 122-213 93-173 (177)
26 cd06466 p23_CS_SGT1_like p23_l 96.8 0.011 2.3E-07 43.0 8.2 75 124-210 1-77 (84)
27 PF04969 CS: CS domain; Inter 95.3 0.25 5.5E-06 34.5 8.9 74 122-207 2-79 (79)
28 PF08190 PIH1: pre-RNA process 92.6 0.62 1.3E-05 41.7 7.9 65 127-206 258-327 (328)
29 cd06467 p23_NUDC_like p23_like 82.2 16 0.00034 26.6 8.3 71 124-209 2-76 (85)
30 cd06465 p23_hB-ind1_like p23_l 82.2 13 0.00027 29.0 8.2 77 122-209 2-78 (108)
31 cd06489 p23_CS_hSgt1_like p23_ 73.3 34 0.00073 25.3 7.9 74 124-209 1-76 (84)
32 cd06468 p23_CacyBP p23_like do 49.6 1.1E+02 0.0023 22.8 9.1 76 121-210 2-85 (92)
33 cd06493 p23_NUDCD1_like p23_NU 43.7 1.4E+02 0.003 22.4 8.7 71 124-209 2-76 (85)
34 PRK09965 3-phenylpropionate di 39.9 51 0.0011 25.6 4.1 32 178-209 66-105 (106)
35 cd03474 Rieske_T4moC Toluene-4 39.6 49 0.0011 25.4 3.9 33 178-210 65-104 (108)
36 cd06494 p23_NUDCD2_like p23-li 32.6 2.5E+02 0.0054 22.2 8.4 72 122-209 7-82 (93)
37 CHL00054 psaB photosystem I P7 30.2 23 0.00051 37.8 1.0 21 241-261 560-580 (734)
38 PF14913 DPCD: DPCD protein fa 29.9 1.9E+02 0.0041 26.8 6.5 75 126-207 92-168 (194)
39 TIGR01336 psaB photosystem I c 29.9 24 0.00052 37.8 1.0 21 240-260 559-579 (734)
40 PRK13199 psaB photosystem I P7 29.5 24 0.00053 37.8 1.0 21 241-261 568-588 (742)
41 cd06471 ACD_LpsHSP_like Group 28.7 1.3E+02 0.0028 22.5 4.5 29 180-209 15-43 (93)
42 PF13598 DUF4139: Domain of un 27.4 1.9E+02 0.0041 26.1 6.1 87 104-190 200-306 (317)
43 PF01954 DUF104: Protein of un 26.8 51 0.0011 24.7 2.0 13 190-202 3-15 (60)
44 TIGR02921 PEP_integral PEP-CTE 26.2 75 0.0016 34.6 3.8 31 178-209 449-484 (952)
45 cd06494 p23_NUDCD2_like p23-li 25.9 1.4E+02 0.0029 23.7 4.4 26 180-205 20-45 (93)
46 COG0361 InfA Translation initi 22.4 2.7E+02 0.0059 22.1 5.4 48 128-185 26-75 (75)
47 PF13570 PQQ_3: PQQ-like domai 21.7 1.3E+02 0.0028 19.4 3.0 25 177-204 3-27 (40)
48 KOG2465 Uncharacterized conser 21.6 35 0.00075 34.0 0.3 22 107-128 91-113 (390)
49 CHL00056 psaA photosystem I P7 20.0 57 0.0012 35.2 1.5 24 238-261 571-594 (750)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.65 E-value=4.7e-16 Score=117.57 Aligned_cols=81 Identities=28% Similarity=0.417 Sum_probs=63.1
Q ss_pred ccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc---------cccccCCeeeeecCCCCCcc
Q 023450 122 DVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS---------LDELELDMWRFRLPESTRPE 190 (282)
Q Consensus 122 dVDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d---------edE~e~DkWRFRLPENA~pE 190 (282)
+|||.|+.++|+..+|+|| ++++++++ +++ ++|.+.|++..... |........+|+||++++++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v---~~~--~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~ 75 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV---EDG--RVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADAD 75 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE---eCC--CEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHH
Confidence 5899999999999999999 79999995 554 56766665532100 11112223379999999999
Q ss_pred ceeeEeeCCeEEEEeeC
Q 023450 191 LASAVFEDGELIVTVPK 207 (282)
Q Consensus 191 ~VsA~~eDGVLTVTVPK 207 (282)
.|+|.|+||+|+||+||
T Consensus 76 ~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 76 EVKAFLENGVLTVTVPK 92 (92)
T ss_pred HCEEEEECCEEEEEecC
Confidence 99999999999999998
No 2
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.8e-16 Score=135.77 Aligned_cols=93 Identities=25% Similarity=0.281 Sum_probs=71.2
Q ss_pred cccCCCCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc--cccCCee----------
Q 023450 114 ELPFRSDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD--ELELDMW---------- 179 (282)
Q Consensus 114 ELPF~AdTdVDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~ded--E~e~DkW---------- 179 (282)
+.+-.+..+.+++|++++|.|++|+|| +++|||++ +++ ++++++|++... .++ +.+..+|
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~---~~~--~~l~isGe~~~e-~e~~~~~~~~~~~E~~~g~F~r 151 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV---EDE--KVLTISGERKKE-EEESGSGKKWKRVERKLGKFKR 151 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEe---ccC--cEEEEecccccc-cccccCCccceeehhcccceEe
Confidence 334444445555999999999999999 89999996 775 688888876432 111 1222233
Q ss_pred eeecCCCCCccceeeEeeCCeEEEEeeCCCCCC
Q 023450 180 RFRLPESTRPELASAVFEDGELIVTVPKGGGLE 212 (282)
Q Consensus 180 RFRLPENA~pE~VsA~~eDGVLTVTVPK~e~pe 212 (282)
+|+||+|+++|.|+|.|+||||+|+|||..+..
T Consensus 152 ~~~lPenv~~d~ikA~~~nGVL~VvvpK~~~~~ 184 (196)
T KOG0710|consen 152 RFELPENVDVDEIKAEMENGVLTVVVPKLEPLL 184 (196)
T ss_pred eecCCccccHHHHHHHhhCCeEEEEEecccccc
Confidence 899999999999999999999999999988643
No 3
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.55 E-value=1e-14 Score=111.50 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=59.4
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccC----CeeeeecCCCCCccceeeEe-
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELEL----DMWRFRLPESTRPELASAVF- 196 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~----DkWRFRLPENA~pE~VsA~~- 196 (282)
+++|++++|...+|+|| ++|++|++ +++ .|.+.|++.+. +++... ...+|+||+++++|+|+|.|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v---~~~---~L~I~g~~~~~--~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV---LDD---YVEIHGKHSER--QDDHGYISREFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEcce--eCCCCEEEEEEEEEEECCCCCChHHeEEEeC
Confidence 68999999999999999 79999996 564 56555543211 111110 34489999999999999999
Q ss_pred eCCeEEEEeeC
Q 023450 197 EDGELIVTVPK 207 (282)
Q Consensus 197 eDGVLTVTVPK 207 (282)
+||+|+||+||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 4
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.53 E-value=3.2e-14 Score=107.00 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=59.5
Q ss_pred ccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc-----------cccCCeeeeecCCCCC
Q 023450 122 DVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD-----------ELELDMWRFRLPESTR 188 (282)
Q Consensus 122 dVDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~ded-----------E~e~DkWRFRLPENA~ 188 (282)
.|||.|+.++|++.+|+|| +++|+|++ +++ .|.+.+++.....+. .......+|+|| +++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~---~~~---~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDY---KDG---YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 5899999999999999999 79999986 553 455555443210010 111123368998 799
Q ss_pred ccceeeEeeCCeEEEEeeC
Q 023450 189 PELASAVFEDGELIVTVPK 207 (282)
Q Consensus 189 pE~VsA~~eDGVLTVTVPK 207 (282)
++.++|.|.||+|+||+||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.52 E-value=6.5e-14 Score=105.48 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=60.2
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeecCCCCCccceee
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPESTRPELASA 194 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d-------edE~e~DkWRFRLPENA~pE~VsA 194 (282)
||.|+.++|...+|+|| ++++++++ +++ . |++.+.+..... +.......++|+||++++++.++|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~---~~~--~-L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a 74 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV---DDN--K-LVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKA 74 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE---ETT--E-EEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE---ecC--c-cceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEE
Confidence 89999999999999999 79999996 665 3 444544331100 111233345899999999999999
Q ss_pred EeeCCeEEEEeeCCCCCCC
Q 023450 195 VFEDGELIVTVPKGGGLEG 213 (282)
Q Consensus 195 ~~eDGVLTVTVPK~e~pe~ 213 (282)
.|+||+|+|++||.+..+.
T Consensus 75 ~~~~GvL~I~~pk~~~~~~ 93 (102)
T PF00011_consen 75 SYENGVLTITIPKKEEEED 93 (102)
T ss_dssp EETTSEEEEEEEBSSSCTT
T ss_pred EecCCEEEEEEEccccccC
Confidence 9999999999999886654
No 6
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.48 E-value=7.8e-14 Score=105.62 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=57.4
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccccc----CCeeeeecCCCCCccceeeEe-e
Q 023450 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELE----LDMWRFRLPESTRPELASAVF-E 197 (282)
Q Consensus 125 VKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e----~DkWRFRLPENA~pE~VsA~~-e 197 (282)
++++.++|+..+|+|| +++|+|++ +++ .|.+.|++... .++.. ....+|+||++++++.|+|.| +
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v---~~~---~L~I~g~~~~~--~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKV---LGD---FVEIHGKHEER--QDEHGFISREFHRRYRLPPGVDPAAITSSLSA 73 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEceE--cCCCCEEEEEEEEEEECCCCcChHHeEEEECC
Confidence 6899999999999999 79999996 554 45545543211 11100 134489999999999999999 7
Q ss_pred CCeEEEEeeC
Q 023450 198 DGELIVTVPK 207 (282)
Q Consensus 198 DGVLTVTVPK 207 (282)
||+|+||+||
T Consensus 74 dGvL~I~~PK 83 (83)
T cd06478 74 DGVLTISGPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 7
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.46 E-value=1.9e-13 Score=113.29 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=61.2
Q ss_pred Ccccee-ecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeecCCCCCcc
Q 023450 121 ADVAVE-ESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPESTRPE 190 (282)
Q Consensus 121 TdVDVK-ETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d-------edE~e~DkWRFRLPENA~pE 190 (282)
.++|+. |+.++|+..||+|| +++|+|+| ++| +|.+.|++....+ |........+|+||++++.|
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v---~~~---~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~ 108 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITA---QDN---LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR 108 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC
Confidence 569999 58999999999999 89999996 664 5666665432100 11112233389999999999
Q ss_pred ceeeEeeCCeEEEEeeCCC
Q 023450 191 LASAVFEDGELIVTVPKGG 209 (282)
Q Consensus 191 ~VsA~~eDGVLTVTVPK~e 209 (282)
+|.|+||||+||+||..
T Consensus 109 --~A~~~dGVL~I~lPK~~ 125 (137)
T PRK10743 109 --GANLVNGLLYIDLERVI 125 (137)
T ss_pred --cCEEeCCEEEEEEeCCC
Confidence 59999999999999964
No 8
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.4e-13 Score=110.16 Aligned_cols=98 Identities=27% Similarity=0.371 Sum_probs=71.4
Q ss_pred chhhhhhcccCC---CCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc--------
Q 023450 107 HIFTRVLELPFR---SDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE-------- 173 (282)
Q Consensus 107 HVFsrVLELPF~---AdTdVDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE-------- 173 (282)
++|.-...++.. ..-+||+.|+.+.|+.++|+|| +++|++++ +++ .|.+.+++.+. .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~---~l~I~g~~~~~-~~~~~~~~~~~e 96 (146)
T COG0071 24 RLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGN---TLTIRGEREEE-EEEEEEGYLRRE 96 (146)
T ss_pred hhhhhhhcccccccCCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECC---EEEEEEEeccc-ccccCCceEEEE
Confidence 344444444444 3458999999999999999999 89999996 664 35555544321 1111
Q ss_pred --ccCCeeeeecCCCCCccceeeEeeCCeEEEEeeCCCCC
Q 023450 174 --LELDMWRFRLPESTRPELASAVFEDGELIVTVPKGGGL 211 (282)
Q Consensus 174 --~e~DkWRFRLPENA~pE~VsA~~eDGVLTVTVPK~e~p 211 (282)
......+|+||+..+++.++|.|.||+|+||+||.++-
T Consensus 97 ~~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 97 RAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPE 136 (146)
T ss_pred EEeeeEEEEEECcccccccceeeEeeCcEEEEEEeccccc
Confidence 22223389999999999999999999999999998754
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.43 E-value=1.9e-13 Score=104.68 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=60.8
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEe-eCCe
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVF-EDGE 200 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~-eDGV 200 (282)
|+.|++++|...+|+|| ++|++|+| +++ .|.+.++++.. +.........+|.||++.++|.|+|.| +||+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v---~~~---~L~I~ger~~~-~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~Gv 74 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT---SNN---QIEVHAEKLAS-DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGT 74 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEecc-CCCEEEEEEEEEECCCCcCHHHeEEEecCCCE
Confidence 68899999999999999 79999996 664 45556654321 122233445699999999999999997 9999
Q ss_pred EEEEeeC
Q 023450 201 LIVTVPK 207 (282)
Q Consensus 201 LTVTVPK 207 (282)
|+||+++
T Consensus 75 L~I~~~~ 81 (81)
T cd06479 75 LTIKARR 81 (81)
T ss_pred EEEEecC
Confidence 9999985
No 10
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.39 E-value=7e-13 Score=101.43 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=58.6
Q ss_pred cceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccc----cCCeeeeecCCCCCccceeeEe
Q 023450 123 VAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDEL----ELDMWRFRLPESTRPELASAVF 196 (282)
Q Consensus 123 VDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~----e~DkWRFRLPENA~pE~VsA~~ 196 (282)
-||.|+++.|...+|+|| +++++|++ +++ .|.+.+.+... +++. .....+|+||++.++|+|+|.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v---~~~---~L~I~g~~~~~--~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKT---KDG---VVEITGKHEEK--QDEHGFVSRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEE---ECC---EEEEEEEECcC--cCCCCEEEEEEEEEEECCCCCCHHHcEEEE
Confidence 379999999999999999 89999996 554 45545543321 1111 1123389999999999999999
Q ss_pred e-CCeEEEEee
Q 023450 197 E-DGELIVTVP 206 (282)
Q Consensus 197 e-DGVLTVTVP 206 (282)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 7 999999998
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.39 E-value=8.6e-13 Score=100.73 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=57.4
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccC-----CeeeeecCCCCCccceeeEee
Q 023450 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELEL-----DMWRFRLPESTRPELASAVFE 197 (282)
Q Consensus 125 VKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~-----DkWRFRLPENA~pE~VsA~~e 197 (282)
..++.++|...+|+|| ++|++|++ +++ .|.+.|++... + +.+. ...+|+||+++++|.|+|.|.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v---~~~---~L~I~g~~~~~--~-~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~ 72 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV---LGD---FIEIHGKHEER--Q-DEHGFISREFQRKYRIPADVDPLTITSSLS 72 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEcce--e-CCCCEEEEEEEEEEECCCCCChHHcEEEeC
Confidence 4678999999999999 79999996 553 45555543211 1 1111 344899999999999999995
Q ss_pred -CCeEEEEeeCC
Q 023450 198 -DGELIVTVPKG 208 (282)
Q Consensus 198 -DGVLTVTVPK~ 208 (282)
||+|+||+||.
T Consensus 73 ~dGvL~I~lPk~ 84 (84)
T cd06498 73 PDGVLTVCGPRK 84 (84)
T ss_pred CCCEEEEEEeCC
Confidence 99999999994
No 12
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.39 E-value=9.6e-13 Score=110.35 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=59.6
Q ss_pred ccceeec-CCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-------cccccCCeeeeecCCCCCccc
Q 023450 122 DVAVEES-PDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-------LDELELDMWRFRLPESTRPEL 191 (282)
Q Consensus 122 dVDVKET-PeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d-------edE~e~DkWRFRLPENA~pE~ 191 (282)
+||+.|+ .++|+..||+|| +++|.|+| +++ .|.+.|++...++ |........+|+||++++.|
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~~---~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQL---EGT---RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---ECC---EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 5999985 689999999999 89999995 664 5666665432100 11112233379999999998
Q ss_pred eeeEeeCCeEEEEeeCCC
Q 023450 192 ASAVFEDGELIVTVPKGG 209 (282)
Q Consensus 192 VsA~~eDGVLTVTVPK~e 209 (282)
+|.|+||||+||+||..
T Consensus 107 -~A~~~nGVL~I~lPK~~ 123 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNE 123 (142)
T ss_pred -cCEEcCCEEEEEEeccC
Confidence 79999999999999963
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.36 E-value=1.8e-12 Score=92.81 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=60.1
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccc--------ccccccCCeeeeecCCCCCcccee
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELS--------SLDELELDMWRFRLPESTRPELAS 193 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~--------dedE~e~DkWRFRLPENA~pE~Vs 193 (282)
|+.|+.+.|.+.+|+|| +++++|++ +++ . |++.+.+.... .+.......++|.||++++++.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v---~~~--~-l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV---EDG--V-LTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE---ECC--E-EEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 57899999999999999 78999996 553 3 44444332110 011245557799999999999999
Q ss_pred eEeeCCeEEEEeeC
Q 023450 194 AVFEDGELIVTVPK 207 (282)
Q Consensus 194 A~~eDGVLTVTVPK 207 (282)
|.|.||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999998
No 14
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.36 E-value=2.5e-12 Score=97.81 Aligned_cols=78 Identities=10% Similarity=0.170 Sum_probs=57.5
Q ss_pred ccceeecC-CeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc--------cccccCCeeeeecCCCCCcc
Q 023450 122 DVAVEESP-DYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS--------LDELELDMWRFRLPESTRPE 190 (282)
Q Consensus 122 dVDVKETP-eAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d--------edE~e~DkWRFRLPENA~pE 190 (282)
++|+.|+. ++|++.+|+|| +++++|++ +++ .|.+.|++..... |........+|.||++++.+
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~---~~~---~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~ 75 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEV---ENN---QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK 75 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC
Confidence 57899985 99999999999 89999996 554 4665665432200 00112223389999998765
Q ss_pred ceeeEeeCCeEEEEeeC
Q 023450 191 LASAVFEDGELIVTVPK 207 (282)
Q Consensus 191 ~VsA~~eDGVLTVTVPK 207 (282)
+|.|+||+|+||+|+
T Consensus 76 --~A~~~~GvL~I~l~~ 90 (90)
T cd06470 76 --GAELENGLLTIDLER 90 (90)
T ss_pred --eeEEeCCEEEEEEEC
Confidence 999999999999986
No 15
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.30 E-value=6.5e-12 Score=96.10 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=55.9
Q ss_pred eecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccc--cccCCeeeeecCCCCCccceeeEee-CCe
Q 023450 126 EESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLD--ELELDMWRFRLPESTRPELASAVFE-DGE 200 (282)
Q Consensus 126 KETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~ded--E~e~DkWRFRLPENA~pE~VsA~~e-DGV 200 (282)
+-..++|...+|+|| ++|++|++ +++ .|.+.|.+....++. -......+|.||++++++.|+|.|. ||+
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v---~~~---~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGv 76 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRT---VDN---LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGI 76 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEE---ECC---EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCE
Confidence 445899999999999 79999996 664 465555442110000 0111244899999999999999996 999
Q ss_pred EEEEeeC
Q 023450 201 LIVTVPK 207 (282)
Q Consensus 201 LTVTVPK 207 (282)
|+|++||
T Consensus 77 L~I~~Pr 83 (83)
T cd06476 77 LCIQAPR 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.29 E-value=4.7e-12 Score=94.47 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=54.4
Q ss_pred CeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc--cccccCCeeeeecCCCCCccceeeEeeC-CeEEEE
Q 023450 130 DYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS--LDELELDMWRFRLPESTRPELASAVFED-GELIVT 204 (282)
Q Consensus 130 eAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d--edE~e~DkWRFRLPENA~pE~VsA~~eD-GVLTVT 204 (282)
++|...+|+|| +++|+|++ ++ +.|.+.+.+...++ ........++|+||++++++.++|.|.| |+|+|+
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v---~~---~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKV---SD---NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEE---EC---CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEE
Confidence 69999999999 89999996 55 34555555432100 0111233458999999999999999998 999999
Q ss_pred eeC
Q 023450 205 VPK 207 (282)
Q Consensus 205 VPK 207 (282)
+||
T Consensus 81 ~Pk 83 (83)
T cd06526 81 APK 83 (83)
T ss_pred ecC
Confidence 998
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.26 E-value=1.1e-11 Score=95.51 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=57.7
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc--ccCCeeeeecCCCCCccceeeEe-eC
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE--LELDMWRFRLPESTRPELASAVF-ED 198 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE--~e~DkWRFRLPENA~pE~VsA~~-eD 198 (282)
|-.|+.+.|+..+|+|| +++|+|++ +++ .|.+.|++....++.. ......+|+||++.+++.|+|.| +|
T Consensus 1 ~~~e~~~~~~v~~dlpG~~~edI~V~v---~~~---~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 1 DQEEGKPMFQILLDVVQFRPEDIIIQV---FEG---WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred CcccCCceEEEEEEcCCCCHHHeEEEE---ECC---EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCC
Confidence 34689999999999999 89999996 664 5666665532211100 11224489999999999999997 89
Q ss_pred CeEEEEee
Q 023450 199 GELIVTVP 206 (282)
Q Consensus 199 GVLTVTVP 206 (282)
|||+|+.|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.21 E-value=2.7e-11 Score=92.90 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=56.7
Q ss_pred eecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc-------ccCCeeeeecCCCCCccceeeEe
Q 023450 126 EESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE-------LELDMWRFRLPESTRPELASAVF 196 (282)
Q Consensus 126 KETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE-------~e~DkWRFRLPENA~pE~VsA~~ 196 (282)
+|..++|...+|+|| ++||+|+| +++ .|++.+.+... .+++ ......+|+||++.+++.|+|.|
T Consensus 3 ~~~~d~~~v~~dlpG~~~edI~V~v---~~~---~L~I~g~~~~~-~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 3 KDGKEGFSLKLDVRGFSPEDLSVRV---DGR---KLVVTGKREKK-NEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CCccceEEEEEECCCCChHHeEEEE---ECC---EEEEEEEEeee-cccCCCcEEEEeeEEEEEEECCCCcChHHeEEEe
Confidence 567899999999999 89999996 653 45555544321 1111 12234489999999999999999
Q ss_pred -eCCeEEEEeeC
Q 023450 197 -EDGELIVTVPK 207 (282)
Q Consensus 197 -eDGVLTVTVPK 207 (282)
+||+|+|++|.
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999994
No 19
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.90 E-value=2.9e-09 Score=82.93 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=53.3
Q ss_pred CCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccc-----cccccCCeeeeecCCCCCccceeeEeeCC-e
Q 023450 129 PDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSS-----LDELELDMWRFRLPESTRPELASAVFEDG-E 200 (282)
Q Consensus 129 PeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~d-----edE~e~DkWRFRLPENA~pE~VsA~~eDG-V 200 (282)
-++|+..||+|| +++|+|+| ++| .|.+.+++....+ +.......++|+||++.+.|+|+|.|.|| +
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v---~~~---~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKV---KDG---KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEE---ECC---EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 478999999999 89999996 664 4666665532110 11122234489999999999999999999 9
Q ss_pred EEEEee
Q 023450 201 LIVTVP 206 (282)
Q Consensus 201 LTVTVP 206 (282)
|++.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 998755
No 20
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.89 E-value=9.1e-09 Score=69.81 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=59.0
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeEE
Q 023450 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202 (282)
Q Consensus 125 VKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVLT 202 (282)
|.|+.+.|.+.+++|| +++++|++ .++ .+.+........+.+.......|+|.||...+++.++|.|.+|.|+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~---~~~--~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~ 75 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV---EDN--VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLE 75 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE---ECC--EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEE
Confidence 7899999999999999 68999986 453 4444332111000122245558899999999999999999999999
Q ss_pred EEeeC
Q 023450 203 VTVPK 207 (282)
Q Consensus 203 VTVPK 207 (282)
|++||
T Consensus 76 i~l~K 80 (80)
T cd00298 76 ITLPK 80 (80)
T ss_pred EEEcC
Confidence 99998
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.53 E-value=2.1e-07 Score=73.43 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=53.0
Q ss_pred cCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc----ccCCeeeeecCCCCCccceeeEee-CCe
Q 023450 128 SPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE----LELDMWRFRLPESTRPELASAVFE-DGE 200 (282)
Q Consensus 128 TPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE----~e~DkWRFRLPENA~pE~VsA~~e-DGV 200 (282)
+.+.|....|+-| .+|++|++ .++ + |++.|...++ +++ ......+|+||++.+++.|+|.+. ||+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv---~~~--~-L~V~Gkh~~~--~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGv 84 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKT---KDG--F-VEVSGKHEEQ--QKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGL 84 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEE---ECC--E-EEEEEEECcc--cCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCe
Confidence 5678999999999 79999996 553 4 5445533322 111 112233899999999999999999 999
Q ss_pred EEEEeeC
Q 023450 201 LIVTVPK 207 (282)
Q Consensus 201 LTVTVPK 207 (282)
|+|+.|.
T Consensus 85 L~IeaP~ 91 (91)
T cd06480 85 LIIEAPQ 91 (91)
T ss_pred EEEEcCC
Confidence 9999883
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.6e-06 Score=70.35 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCccceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCccccccccc----ccCCeeeeecCCCCCccce
Q 023450 119 SDADVAVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDE----LELDMWRFRLPESTRPELA 192 (282)
Q Consensus 119 AdTdVDVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE----~e~DkWRFRLPENA~pE~V 192 (282)
+.....+..+.+-|....|+-. .+|++|.+ .+ +.|++.|..-++ +++ ......||.||++.+++.|
T Consensus 61 ~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~---~~---~~l~V~gkHeer--~d~~G~v~R~F~R~y~LP~~vdp~~V 132 (173)
T KOG3591|consen 61 SSGASEIVNDKDKFEVNLDVHQFKPEELKVKT---DD---NTLEVEGKHEEK--EDEHGYVSRSFVRKYLLPEDVDPTSV 132 (173)
T ss_pred cccccccccCCCcEEEEEEcccCcccceEEEe---CC---CEEEEEeeeccc--cCCCCeEEEEEEEEecCCCCCChhhe
Confidence 3445677788899999999988 79999997 34 334434422111 111 1122559999999999999
Q ss_pred eeE-eeCCeEEEEeeCCCCCC
Q 023450 193 SAV-FEDGELIVTVPKGGGLE 212 (282)
Q Consensus 193 sA~-~eDGVLTVTVPK~e~pe 212 (282)
++. ..||+|||++||.++.+
T Consensus 133 ~S~LS~dGvLtI~ap~~~~~~ 153 (173)
T KOG3591|consen 133 TSTLSSDGVLTIEAPKPPPKQ 153 (173)
T ss_pred EEeeCCCceEEEEccCCCCcC
Confidence 985 57999999999977544
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.00 E-value=5.1e-05 Score=54.73 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=54.2
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeEE
Q 023450 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202 (282)
Q Consensus 125 VKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVLT 202 (282)
|.++++.....+++|| ++++++++ ++. . +...+ +...-.++||...++|.++|.+.+|.|.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~---~~~--~-l~i~~-----------~~~~~~~~l~~~I~~e~~~~~~~~~~l~ 63 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC---SDL--Y-LKVNF-----------PPYLFELDLAAPIDDEKSSAKIGNGVLV 63 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE---ecC--E-EEEcC-----------CCEEEEEeCcccccccccEEEEeCCEEE
Confidence 7899999999999999 67888774 553 2 33222 1123467999999999999999999999
Q ss_pred EEeeCCC
Q 023450 203 VTVPKGG 209 (282)
Q Consensus 203 VTVPK~e 209 (282)
|++||.+
T Consensus 64 i~L~K~~ 70 (78)
T cd06469 64 FTLVKKE 70 (78)
T ss_pred EEEEeCC
Confidence 9999976
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.70 E-value=0.00043 Score=48.65 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=57.1
Q ss_pred eeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeEE
Q 023450 125 VEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202 (282)
Q Consensus 125 VKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVLT 202 (282)
|.++.+.....+++|| ++++.|.+ .+. .+-+..... +...-.+.+.|+...++|..++.+.+|.|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~---~~~--~l~i~~~~~-------~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~ 68 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEF---TPK--SLTVSVKGG-------GGKEYLLEGELFGPIDPEESKWTVEDRKIE 68 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEE---ecC--EEEEEeeCC-------CCCceEEeeEccCccchhhcEEEEeCCEEE
Confidence 7889999999999999 58888885 553 333322211 112346789999999999999999999999
Q ss_pred EEeeCCCC
Q 023450 203 VTVPKGGG 210 (282)
Q Consensus 203 VTVPK~e~ 210 (282)
|+++|..+
T Consensus 69 i~L~K~~~ 76 (84)
T cd06463 69 ITLKKKEP 76 (84)
T ss_pred EEEEECCC
Confidence 99999763
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.52 E-value=0.00063 Score=60.35 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=57.0
Q ss_pred ccceeecCC-eeeEEEecCC--CCc-eEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEee
Q 023450 122 DVAVEESPD-YFKFVAETDG--MGE-VRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFE 197 (282)
Q Consensus 122 dVDVKETPe-AhvFvADlPG--keE-VKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~e 197 (282)
.|++.|.-+ -.+-+||||| +++ ++|++ +.+...+++..+++. .-|--||.. .++..+|.|.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l---~~d~~~L~i~~~~~~-----------~krv~L~~~-~~e~~~~t~n 157 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTL---DDDEGALTIRVGEKY-----------LKRVALPWP-DPEITSATFN 157 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEe---ecCCceEEEecCCce-----------EeeEecCCC-ccceeeEEEe
Confidence 478888877 5999999999 567 89985 765445555333221 226778844 6899999999
Q ss_pred CCeEEEEeeCCCCCCC
Q 023450 198 DGELIVTVPKGGGLEG 213 (282)
Q Consensus 198 DGVLTVTVPK~e~pe~ 213 (282)
||+|.|-+-|.++.++
T Consensus 158 NgILEIri~~~~~~~~ 173 (177)
T PF05455_consen 158 NGILEIRIRRTEESSG 173 (177)
T ss_pred CceEEEEEeecCCCCC
Confidence 9999999999875554
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.83 E-value=0.011 Score=42.99 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=57.7
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeE
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVL 201 (282)
||-++.+.....+.+|| +++++|+. ++. ++.+...... .+...+.+.|+....+|..++.+.+|.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~---~~~--~l~i~~~~~~-------~~~~~~~~~L~~~I~~~~s~~~~~~~~v 68 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF---NEQ--SLSVSIILPG-------GSEYQLELDLFGPIDPEQSKVSVLPTKV 68 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---ecC--EEEEEEECCC-------CCeEEEecccccccCchhcEEEEeCeEE
Confidence 79999999999999999 68999985 553 4444211100 1123567889999999999999999999
Q ss_pred EEEeeCCCC
Q 023450 202 IVTVPKGGG 210 (282)
Q Consensus 202 TVTVPK~e~ 210 (282)
.|+..|..+
T Consensus 69 ei~L~K~~~ 77 (84)
T cd06466 69 EITLKKAEP 77 (84)
T ss_pred EEEEEcCCC
Confidence 999999763
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=95.34 E-value=0.25 Score=34.52 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=54.6
Q ss_pred ccceeecCCeeeEEEecCC----CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEee
Q 023450 122 DVAVEESPDYFKFVAETDG----MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFE 197 (282)
Q Consensus 122 dVDVKETPeAhvFvADlPG----keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~e 197 (282)
+.+|.++++.-...+.+++ +++|+|++ .+. .+.+.... .+ .+.-.|...|....++|..+..+.
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~---~~~--~l~v~~~~------~~-~~~~~~~~~L~~~I~~~~s~~~~~ 69 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDF---TDT--SLSVSIKS------GD-GKEYLLEGELFGEIDPDESTWKVK 69 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEE---ETT--EEEEEEEE------TT-SCEEEEEEEBSS-BECCCEEEEEE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEE---Eee--EEEEEEEc------cC-CceEEEEEEEeeeEcchhcEEEEE
Confidence 4689999999988999944 58999985 664 44443210 00 133467888999999999999999
Q ss_pred CCeEEEEeeC
Q 023450 198 DGELIVTVPK 207 (282)
Q Consensus 198 DGVLTVTVPK 207 (282)
++.|.|++.|
T Consensus 70 ~~~i~i~L~K 79 (79)
T PF04969_consen 70 DNKIEITLKK 79 (79)
T ss_dssp TTEEEEEEEB
T ss_pred CCEEEEEEEC
Confidence 9999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.63 E-value=0.62 Score=41.72 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=50.0
Q ss_pred ecCCeeeEEEecCC---CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeC--CeE
Q 023450 127 ESPDYFKFVAETDG---MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED--GEL 201 (282)
Q Consensus 127 ETPeAhvFvADlPG---keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eD--GVL 201 (282)
..|+..+..+++|| ..++..+| ++. ++.+.... ........||-..+.+.++|.+.- ++|
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV---~~~--~l~l~~~~----------~~y~L~l~LP~~V~~~~~~Akf~~~~~~L 322 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDV---SED--RLSLSSPK----------PKYRLDLPLPYPVDEDNGKAKFDKKTKTL 322 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEE---eCC--EEEEEeCC----------CceEEEccCCCcccCCCceEEEccCCCEE
Confidence 44899999999999 56777775 553 66553331 133567899999999999999876 999
Q ss_pred EEEee
Q 023450 202 IVTVP 206 (282)
Q Consensus 202 TVTVP 206 (282)
+||+|
T Consensus 323 ~vtlp 327 (328)
T PF08190_consen 323 TVTLP 327 (328)
T ss_pred EEEEE
Confidence 99998
No 29
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=82.16 E-value=16 Score=26.59 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=52.2
Q ss_pred ceeecCCeeeEEEecCC---CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeC-C
Q 023450 124 AVEESPDYFKFVAETDG---MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED-G 199 (282)
Q Consensus 124 DVKETPeAhvFvADlPG---keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eD-G 199 (282)
+|.++.+.-.....+|. +++|+|++ .+. .+-+...+. + ...--+|....++|..+-.+.+ .
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~---~~~--~l~v~~~~~-----~-----~~l~~~L~~~I~~~~s~w~~~~~~ 66 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEI---TPK--HLKVGVKGG-----E-----PLLDGELYAKVKVDESTWTLEDGK 66 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEE---EcC--EEEEEECCC-----C-----ceEcCcccCceeEcCCEEEEeCCC
Confidence 68999888777788875 68999985 553 555533211 0 1122368899999999999999 9
Q ss_pred eEEEEeeCCC
Q 023450 200 ELIVTVPKGG 209 (282)
Q Consensus 200 VLTVTVPK~e 209 (282)
.|.|+.+|.+
T Consensus 67 ~v~i~L~K~~ 76 (85)
T cd06467 67 LLEITLEKRN 76 (85)
T ss_pred EEEEEEEECC
Confidence 9999999977
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=82.15 E-value=13 Score=29.02 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=57.1
Q ss_pred ccceeecCCeeeEEEecCCCCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeE
Q 023450 122 DVAVEESPDYFKFVAETDGMGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (282)
Q Consensus 122 dVDVKETPeAhvFvADlPGkeEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVL 201 (282)
.++|-.|++.-...+.+||.++++|++ .+. +|.+..-+.. . .+.-..-..|....++|..+..+.++.+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~~~~~V~~---~~~--~l~v~~~~~~-~-----~~~y~~~~~L~~~I~pe~s~~~v~~~kv 70 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDAKDPKIKL---EPT--SLSFKAKGGG-G-----GKKYEFDLEFYKEIDPEESKYKVTGRQI 70 (108)
T ss_pred ceeeeECCCEEEEEEEeCCCCCcEEEE---ECC--EEEEEEEcCC-C-----CeeEEEEeEhhhhccccccEEEecCCeE
Confidence 579999999999999999988888874 553 5544321110 0 1111234489999999999999999999
Q ss_pred EEEeeCCC
Q 023450 202 IVTVPKGG 209 (282)
Q Consensus 202 TVTVPK~e 209 (282)
.|+..|..
T Consensus 71 eI~L~K~~ 78 (108)
T cd06465 71 EFVLRKKE 78 (108)
T ss_pred EEEEEECC
Confidence 99999976
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=73.32 E-value=34 Score=25.32 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=51.0
Q ss_pred ceeecCCeeeEEEecCC--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeE
Q 023450 124 AVEESPDYFKFVAETDG--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGEL 201 (282)
Q Consensus 124 DVKETPeAhvFvADlPG--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVL 201 (282)
||-.+.+.-...+.++| +++++|+. ++. .+-+..-... . +.-..-+.|-...+||..+....++-+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~---~~~--~l~~~~~~~~----~---~~y~~~~~L~~~I~p~~s~~~v~~~ki 68 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF---EKR--ELSATVKLPS----G---NDYSLKLHLLHPIVPEQSSYKILSTKI 68 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---eCC--EEEEEEECCC----C---CcEEEeeecCceecchhcEEEEeCcEE
Confidence 68888876666667888 58888884 664 4333221100 0 112335588899999999999999999
Q ss_pred EEEeeCCC
Q 023450 202 IVTVPKGG 209 (282)
Q Consensus 202 TVTVPK~e 209 (282)
.|+..|.+
T Consensus 69 ei~L~K~~ 76 (84)
T cd06489 69 EIKLKKTE 76 (84)
T ss_pred EEEEEcCC
Confidence 99999975
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=49.65 E-value=1.1e+02 Score=22.81 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=53.7
Q ss_pred CccceeecCCeeeEEEecCC--C---CceEEEEEEecCCceeEEEecCCcccccccccccCCeeee---ecCCCCCccce
Q 023450 121 ADVAVEESPDYFKFVAETDG--M---GEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRF---RLPESTRPELA 192 (282)
Q Consensus 121 TdVDVKETPeAhvFvADlPG--k---eEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRF---RLPENA~pE~V 192 (282)
+.-+|-.+.+.-.-.+++|+ . ++++|+. .+. .+-+...+ .+++.+.| +|-...++|..
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~---~~~--~l~v~~~~---------~~~~~~~~~~~~L~~~I~~e~s 67 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEF---TER--SFELKVHD---------LNGKNYRFTINRLLKKIDPEKS 67 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEe---cCC--EEEEEEEC---------CCCcEEEEEehHhhCccCcccc
Confidence 35689999888777788887 3 6777763 553 54443211 12223433 57889999999
Q ss_pred eeEeeCCeEEEEeeCCCC
Q 023450 193 SAVFEDGELIVTVPKGGG 210 (282)
Q Consensus 193 sA~~eDGVLTVTVPK~e~ 210 (282)
+-.+.++.+.++..|.++
T Consensus 68 ~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 68 SFKVKTDRIVITLAKKKE 85 (92)
T ss_pred EEEEeCCEEEEEEEeCCC
Confidence 999999999999999873
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=43.68 E-value=1.4e+02 Score=22.39 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=50.2
Q ss_pred ceeecCCeeeEEEecC-C--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCC-
Q 023450 124 AVEESPDYFKFVAETD-G--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDG- 199 (282)
Q Consensus 124 DVKETPeAhvFvADlP-G--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDG- 199 (282)
+|-.|++.-...+.+| | +.+++|++ ++. ++.+...+. +.-.++ .|....++|..+=..++|
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~---~~~--~l~v~~~~~-----~~~~~g-----~L~~~I~~d~Stw~i~~~~ 66 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKF---LPD--HISIALKDQ-----APLLEG-----KLYSSIDHESSTWIIKENK 66 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEE---ecC--EEEEEeCCC-----CeEEeC-----cccCcccccCcEEEEeCCC
Confidence 6888888877778886 6 68999985 663 555533211 001111 678888889988888877
Q ss_pred eEEEEeeCCC
Q 023450 200 ELIVTVPKGG 209 (282)
Q Consensus 200 VLTVTVPK~e 209 (282)
.|.|+..|.+
T Consensus 67 ~l~i~L~K~~ 76 (85)
T cd06493 67 SLEVSLIKKD 76 (85)
T ss_pred EEEEEEEECC
Confidence 5999999976
No 34
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=39.92 E-value=51 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=24.9
Q ss_pred eeeeec--------CCCCCccceeeEeeCCeEEEEeeCCC
Q 023450 178 MWRFRL--------PESTRPELASAVFEDGELIVTVPKGG 209 (282)
Q Consensus 178 kWRFRL--------PENA~pE~VsA~~eDGVLTVTVPK~e 209 (282)
.|+|.| |....+.......+||.+.|.+|+..
T Consensus 66 g~~Fd~~tG~~~~~p~~~~l~~y~v~v~~g~v~v~~~~~~ 105 (106)
T PRK09965 66 AASFCLRTGKALCLPATDPLRTYPVHVEGGDIFIDLPEAQ 105 (106)
T ss_pred CCEEEcCCCCeeCCCCCCCcceEeEEEECCEEEEEccCCC
Confidence 568877 34456777888899999999999754
No 35
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=39.64 E-value=49 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=27.9
Q ss_pred eeeeec-------CCCCCccceeeEeeCCeEEEEeeCCCC
Q 023450 178 MWRFRL-------PESTRPELASAVFEDGELIVTVPKGGG 210 (282)
Q Consensus 178 kWRFRL-------PENA~pE~VsA~~eDGVLTVTVPK~e~ 210 (282)
.|+|.| |+...+.......+||.+.|.++..++
T Consensus 65 g~~Fdl~~G~~~~~~~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 65 LWQFDADTGEGLNPRDCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred CCEEECCCccccCCCCCccceEeEEEECCEEEEeCCCcCc
Confidence 568887 777788888999999999999997654
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=32.60 E-value=2.5e+02 Score=22.19 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=53.2
Q ss_pred ccceeecCCeeeEEEecC-C--CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeC
Q 023450 122 DVAVEESPDYFKFVAETD-G--MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFED 198 (282)
Q Consensus 122 dVDVKETPeAhvFvADlP-G--keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eD 198 (282)
.-+|..|.+.-...+.+| | +.+|+|.+ .+. ++-|...++. -.++ .|....++|..+=.++|
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i---~~~--~l~V~~~g~~------~l~G-----~L~~~I~~destWtled 70 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKL---GSR--DISLAVKGQE------VLKG-----KLFDSVVADECTWTLED 70 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEE---EcC--EEEEEECCEE------EEcC-----cccCccCcccCEEEEEC
Confidence 368999988888888887 4 68999984 674 5545332211 1222 58889999999999999
Q ss_pred Ce-EEEEeeCCC
Q 023450 199 GE-LIVTVPKGG 209 (282)
Q Consensus 199 GV-LTVTVPK~e 209 (282)
|. |.|++.|..
T Consensus 71 ~k~l~I~L~K~~ 82 (93)
T cd06494 71 RKLIRIVLTKSN 82 (93)
T ss_pred CcEEEEEEEeCC
Confidence 97 799999976
No 37
>CHL00054 psaB photosystem I P700 chlorophyll a apoprotein A2
Probab=30.19 E-value=23 Score=37.84 Aligned_cols=21 Identities=48% Similarity=0.909 Sum_probs=17.1
Q ss_pred CCCCCCceeeecccchhhhhh
Q 023450 241 SAPGNGGTCTISSTELFSIAS 261 (282)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~ 261 (282)
..||.||||.||.-+-|-.+-
T Consensus 560 DGPGRGGTC~iSaWD~~yL~~ 580 (734)
T CHL00054 560 DGPGRGGTCDISAWDAFYLAV 580 (734)
T ss_pred CCCCCCCccccchhHHHHHHH
Confidence 469999999999988766543
No 38
>PF14913 DPCD: DPCD protein family
Probab=29.90 E-value=1.9e+02 Score=26.80 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=48.7
Q ss_pred eecCCeeeEEEe-cCC-CCceEEEEEEecCCceeEEEecCCcccccccccccCCeeeeecCCCCCccceeeEeeCCeEEE
Q 023450 126 EESPDYFKFVAE-TDG-MGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELIV 203 (282)
Q Consensus 126 KETPeAhvFvAD-lPG-keEVKVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~DkWRFRLPENA~pE~VsA~~eDGVLTV 203 (282)
+.|..+|.|.+- +|- ++-..|.| +++.-.|||+.+...=- .+=.--|+=|+.||. ..+.++-..+|..|+|
T Consensus 92 ~dTk~~fqWRIRNLPYP~dvYsVtv---d~~~r~ivvRTtNKKYy--Kk~~IPDl~R~~l~l--~~~~ls~~h~nNTLII 164 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLPYPKDVYSVTV---DEDERCIVVRTTNKKYY--KKFSIPDLDRCGLPL--EQSALSFAHQNNTLII 164 (194)
T ss_pred EcCccceEEEEccCCCCccceEEEE---cCCCcEEEEECcCccce--eEecCCcHHhhCCCc--chhhceeeeecCeEEE
Confidence 467889999874 688 66667775 55433577766532100 001122333666664 4578899999999999
Q ss_pred EeeC
Q 023450 204 TVPK 207 (282)
Q Consensus 204 TVPK 207 (282)
+-.|
T Consensus 165 sYkK 168 (194)
T PF14913_consen 165 SYKK 168 (194)
T ss_pred EecC
Confidence 9988
No 39
>TIGR01336 psaB photosystem I core protein PsaB. The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only.
Probab=29.86 E-value=24 Score=37.77 Aligned_cols=21 Identities=48% Similarity=0.876 Sum_probs=17.0
Q ss_pred cCCCCCCceeeecccchhhhh
Q 023450 240 PSAPGNGGTCTISSTELFSIA 260 (282)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (282)
-..||.||||.||.-+-|-.+
T Consensus 559 CDGPGRGGTC~iSaWD~~~L~ 579 (734)
T TIGR01336 559 CDGPGRGGTCDISAWDAFYLA 579 (734)
T ss_pred CCCCCCCcccccchhHHHHHH
Confidence 346999999999998876554
No 40
>PRK13199 psaB photosystem I P700 chlorophyll a apoprotein A2; Provisional
Probab=29.52 E-value=24 Score=37.76 Aligned_cols=21 Identities=48% Similarity=0.903 Sum_probs=17.0
Q ss_pred CCCCCCceeeecccchhhhhh
Q 023450 241 SAPGNGGTCTISSTELFSIAS 261 (282)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~ 261 (282)
..||.||||.||.-+-|-.+-
T Consensus 568 DGPGRGGTC~iSaWD~~~L~~ 588 (742)
T PRK13199 568 DGPGRGGTCDISAWDAFYLAM 588 (742)
T ss_pred CCCCCCCccccchhHHHHHHH
Confidence 469999999999988766543
No 41
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=28.66 E-value=1.3e+02 Score=22.55 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.6
Q ss_pred eeecCCCCCccceeeEeeCCeEEEEeeCCC
Q 023450 180 RFRLPESTRPELASAVFEDGELIVTVPKGG 209 (282)
Q Consensus 180 RFRLPENA~pE~VsA~~eDGVLTVTVPK~e 209 (282)
++.|| ..+.|.++-.+++++|+|+.-+..
T Consensus 15 ~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 15 EADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 78899 688999999999999999988754
No 42
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=27.44 E-value=1.9e+02 Score=26.11 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=45.5
Q ss_pred cCcchhh-hhhcccCCCCCccceeecCCe---------------eeEEEecCC--CCceEEEEEEecC--CceeEEEecC
Q 023450 104 RLPHIFT-RVLELPFRSDADVAVEESPDY---------------FKFVAETDG--MGEVRAHMVEIHP--GVTKIVIRPN 163 (282)
Q Consensus 104 RLPHVFs-rVLELPF~AdTdVDVKETPeA---------------hvFvADlPG--keEVKVeVVEIEp--GVtKVVV~~g 163 (282)
+|+|+-. --++|+|-.|-+|.++-.... |.+...+-+ .+.++|+|.+=-| +..+|-|...
T Consensus 200 ~l~~~~~ge~~~l~~G~d~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~ 279 (317)
T PF13598_consen 200 RLPHTAPGEEFELSFGVDPDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELL 279 (317)
T ss_pred ecCCCCCCCEEEEEcccCCCEEEEEEecceecccccccccEEEEEEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEc
Confidence 4455332 245688888888776544321 344444444 6777777654332 2233433222
Q ss_pred CcccccccccccCCeeeeecCCCCCcc
Q 023450 164 GCVELSSLDELELDMWRFRLPESTRPE 190 (282)
Q Consensus 164 grr~~~dedE~e~DkWRFRLPENA~pE 190 (282)
.......++..+.-.|++.||++...+
T Consensus 280 ~~~~~~~~~~~g~~~W~~~l~~g~~~~ 306 (317)
T PF13598_consen 280 EPPEPNEDEKDGILEWKVTLPPGESRT 306 (317)
T ss_pred CCCCCcccCCCCEEEEEEEECCCCEEE
Confidence 111110123345559999999987544
No 43
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=26.80 E-value=51 Score=24.75 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=10.2
Q ss_pred cceeeEeeCCeEE
Q 023450 190 ELASAVFEDGELI 202 (282)
Q Consensus 190 E~VsA~~eDGVLT 202 (282)
..|.|.|+||||.
T Consensus 3 ~~I~aiYe~Gvlk 15 (60)
T PF01954_consen 3 KVIEAIYENGVLK 15 (60)
T ss_dssp --EEEEEETTEEE
T ss_pred ceEEEEEECCEEE
Confidence 4589999999986
No 44
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=26.24 E-value=75 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.6
Q ss_pred eeeeecCCCCCccceeeEeeCCeEE-----EEeeCCC
Q 023450 178 MWRFRLPESTRPELASAVFEDGELI-----VTVPKGG 209 (282)
Q Consensus 178 kWRFRLPENA~pE~VsA~~eDGVLT-----VTVPK~e 209 (282)
..+|.|||.+.+.. -|.=.||+|. |.|||..
T Consensus 449 ElsFPLPEgAtVTG-yALdvdGkL~Daw~~VVVEKEK 484 (952)
T TIGR02921 449 FFHFSLPEEAAITG-LWLGDDAKDDDKFAFALAPRGA 484 (952)
T ss_pred EEEecCCCCCeeee-eeecCCccccccccceeccHHH
Confidence 67999999999998 6777899999 9999974
No 45
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=25.94 E-value=1.4e+02 Score=23.69 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=25.3
Q ss_pred eeecCCCCCccceeeEeeCCeEEEEe
Q 023450 180 RFRLPESTRPELASAVFEDGELIVTV 205 (282)
Q Consensus 180 RFRLPENA~pE~VsA~~eDGVLTVTV 205 (282)
+|.||++++...++..+...-|+|.+
T Consensus 20 ~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 20 EVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEECCCCCceeeEEEEEEcCEEEEEE
Confidence 89999999999999999999999998
No 46
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=22.40 E-value=2.7e+02 Score=22.12 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=29.6
Q ss_pred cCCeeeEEEecCCCCce-EEEEEEecCCceeEEEecCCcccccccccccCC-eeeeecCC
Q 023450 128 SPDYFKFVAETDGMGEV-RAHMVEIHPGVTKIVIRPNGCVELSSLDELELD-MWRFRLPE 185 (282)
Q Consensus 128 TPeAhvFvADlPGkeEV-KVeVVEIEpGVtKVVV~~ggrr~~~dedE~e~D-kWRFRLPE 185 (282)
.-+-|.-.|.+||+--. ++. |-+| ++|+|.-... +..+.| .||++-++
T Consensus 26 ~edg~~~~ahI~GKmr~~~i~---I~~G-D~V~Ve~~~~------d~~kg~I~~Ry~~~~ 75 (75)
T COG0361 26 LENGHERLAHISGKMRKNRIR---ILPG-DVVLVELSPY------DLTKGRIVYRYKKDE 75 (75)
T ss_pred ecCCcEEEEEccCcchheeEE---eCCC-CEEEEEeccc------ccccccEEEEecCCC
Confidence 66777777888884333 554 5777 5777755532 223444 78887553
No 47
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.70 E-value=1.3e+02 Score=19.39 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=14.0
Q ss_pred CeeeeecCCCCCccceeeEeeCCeEEEE
Q 023450 177 DMWRFRLPESTRPELASAVFEDGELIVT 204 (282)
Q Consensus 177 DkWRFRLPENA~pE~VsA~~eDGVLTVT 204 (282)
-.|+++++.... .+.++.||.|.|.
T Consensus 3 ~~W~~~~~~~~~---~~~~v~~g~vyv~ 27 (40)
T PF13570_consen 3 VLWSYDTGGPIW---SSPAVAGGRVYVG 27 (40)
T ss_dssp EEEEEE-SS------S--EECTSEEEEE
T ss_pred eeEEEECCCCcC---cCCEEECCEEEEE
Confidence 379999986333 3446778877664
No 48
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=35 Score=34.03 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=17.8
Q ss_pred chhhh-hhcccCCCCCccceeec
Q 023450 107 HIFTR-VLELPFRSDADVAVEES 128 (282)
Q Consensus 107 HVFsr-VLELPF~AdTdVDVKET 128 (282)
.||.+ .-|||-.++++|||+||
T Consensus 91 ~vfr~~s~~lp~~~d~~vdWeet 113 (390)
T KOG2465|consen 91 RVFRPKSDELPGESDAEVDWEET 113 (390)
T ss_pred HhhcchhhcCCCCCCcccChhhh
Confidence 45544 35899999999999998
No 49
>CHL00056 psaA photosystem I P700 chlorophyll a apoprotein A1
Probab=20.04 E-value=57 Score=35.18 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.2
Q ss_pred cccCCCCCCceeeecccchhhhhh
Q 023450 238 FMPSAPGNGGTCTISSTELFSIAS 261 (282)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~ 261 (282)
|--..||.||||.||.-+-|-.+-
T Consensus 571 FpCDGPGRGGTC~iSaWD~~~L~~ 594 (750)
T CHL00056 571 FPCDGPGRGGTCQVSAWDHVFLGL 594 (750)
T ss_pred cCCCCCCCCCcCccchhHHHHHHH
Confidence 333569999999999988665543
Done!