RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023450
(282 letters)
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 40.9 bits (97), Expect = 4e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 180 RFRLPESTRPELASAVFEDGELIVTVPK 207
RF LP+S + +A +G L + +PK
Sbjct: 69 RFALPDSADADGITAAGRNGVLEIRIPK 96
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 40.8 bits (96), Expect = 1e-04
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 180 RFRLPESTRPELASAVFEDGELIVTVPK 207
RFRL E + E A E+G L VTVPK
Sbjct: 109 RFRLLEDAKVEEVKAGLENGVLTVTVPK 136
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 38.6 bits (90), Expect = 6e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 180 RFRLPESTRPELASAVFEDGELIVTVPK 207
+LP + + E ASA FE+G L V +PK
Sbjct: 122 TIKLPATVKEENASAKFENGVLSVILPK 149
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 21/90 (23%)
Query: 135 VAETDGMGEVRAHMVEIHPGVTK----IVIRPNGCVELSSLDELEL-DMWR--------- 180
+ E G V A + G K + + + + E+ +
Sbjct: 29 MYEEGGYLVVVADL----AGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVR 84
Query: 181 --FRLPESTRPEL-ASAVFEDGELIVTVPK 207
RLP + + S +E+G L + +P
Sbjct: 85 KVIRLPYNVAKDAEISGKYENGVLTIRIPI 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.031
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 11/32 (34%)
Query: 47 KES-KKLEEETTMKVH-P--VPTKKRNNIAIQ 74
K++ KKL + ++K++ P +AI+
Sbjct: 19 KQALKKL--QASLKLYADDSAPA-----LAIK 43
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 33.6 bits (76), Expect = 0.053
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 180 RFRLPESTRPELASAVFEDGELIVTVPK 207
F PE A DG ++V P
Sbjct: 285 AFVTPEVVDASKTQAEIVDGLMVVEAPL 312
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 31.2 bits (71), Expect = 0.083
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 180 RFRLPESTRPE-LASAVFEDGELIVTVPK 207
++ LP P ++S++ +G L V P
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.14
Identities = 37/184 (20%), Positives = 55/184 (29%), Gaps = 73/184 (39%)
Query: 89 NPQNLSTGFHNKKLRRLPHIFTRVLELPFRSDADVAVEESPDYFKFVAETDGMGEVRAHM 148
NP NL+ F +K +R I + F + D ++ FK
Sbjct: 1668 NPVNLTIHFGGEKGKR---IRENYSAMIFETIVD-GKLKTEKIFK--------------- 1708
Query: 149 VEIHPGVTKIVIR-PNGCVELSSLDELELDMWRFRLPESTRPEL--AS-AVFEDGELIVT 204
EI+ T R G L + T+P L A FED
Sbjct: 1709 -EINEHSTSYTFRSEKG----------LLS-----ATQFTQPALTLMEKAAFED------ 1746
Query: 205 VPKGGGLEGLEERDGGGGGDGSENGEFRG---GGQEFMPSAPGNGGTCTISSTELFSIAS 261
L+ + G + F G G E+ +A S ++ SI S
Sbjct: 1747 ---------LKSK-----GLIPADATFAGHSLG--EY--AA-------LASLADVMSIES 1781
Query: 262 LAAL 265
L +
Sbjct: 1782 LVEV 1785
Score = 28.9 bits (64), Expect = 2.7
Identities = 30/230 (13%), Positives = 54/230 (23%), Gaps = 76/230 (33%)
Query: 41 FSFSLLKESKKLEEETTMKVHPVPTKKRNNIAIQYFDMNLNNFNSNLRNPQNLSTGFH-- 98
+ FS+L + +H K + I Y M F + + F
Sbjct: 1657 YGFSILDIVI--NNPVNLTIHFGGEKGKR-IRENYSAMI---FETIVDGKLKTEKIFKEI 1710
Query: 99 NKKLRRL----------------PHIFT------RVLE---------------------- 114
N+ P + L+
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 115 ------LPFRSDADVAVEESPDYFKFVAETDGMGEVRAHMVEIHPGVTKIVIRPNGCVEL 168
+ V + D +G M+ I+PG ++
Sbjct: 1771 ASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG--RVAA-------- 1819
Query: 169 SSLDELELDMWRFRLPESTRPELASAV-F-EDGELIVTVPKGGGLEGLEE 216
S + L R+ + T L V + + + V G L L+
Sbjct: 1820 -SFSQEALQYVVERVGKRT-GWLVEIVNYNVENQQYVA---AGDLRALDT 1864
Score = 26.9 bits (59), Expect = 9.3
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 41/112 (36%)
Query: 4 PFCSNKILI-----PIPNSSPFFSRRASLVTLLYLFVISSFLFSFSLLKESKKLEEETTM 58
PF K+ P+ +SPF S LL + L + +
Sbjct: 408 PFSERKLKFSNRFLPV--ASPFHS---------------------HLLVPASDLINKDLV 444
Query: 59 KVHPVPTKKRNNIAIQYFDMNL---NNFN-SNLRNPQNLSTGFHNKKLRRLP 106
+NN++ D+ + + F+ S+LR + + RLP
Sbjct: 445 ---------KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 30.5 bits (69), Expect = 0.16
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 180 RFRLPESTRPE-LASAVFEDGELIVTVPK 207
R+RLP P + SA+ +G L +
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATP 87
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 30.1 bits (68), Expect = 0.20
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 180 RFRLPESTRPE-LASAVFEDGELIVTVPK 207
++R+P P + S++ DG L V P+
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPR 82
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 30.2 bits (68), Expect = 0.22
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 125 VEESPDYFKFVAETDGMG------EVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDM 178
V D F + +V+ VEIH G +G +
Sbjct: 7 VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIH-GKHNERQDDHGYIS-------REFH 58
Query: 179 WRFRLPESTRPE-LASAVFEDGELIVTVPK 207
R+RLP + L+ ++ DG L + PK
Sbjct: 59 RRYRLPSNVDQSALSCSLSADGMLTFSGPK 88
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 31.3 bits (70), Expect = 0.33
Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 11/158 (6%)
Query: 97 FHNKKLRRLPHIFTRVLELPFRSDADVAVEESPDYFKFVAETDGMGEVRAHMVEIHPGVT 156
++ RR + + + F + ++ + +A V +V T
Sbjct: 110 LSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKT 169
Query: 157 KIVIRPNGCVELSSLDELELDMWRFRLPESTRPELASAVFEDGELI--VTVPKGGGLEGL 214
+ + E+ + + + +VFE E+I + V KG G EG+
Sbjct: 170 PLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGV 229
Query: 215 EERDGGGGGDGSENGEFRGGGQEFMPSAPGNGGTCTIS 252
R G + R G +
Sbjct: 230 THRWGTKKLPRKTHRGLR---------KVACIGAWHPA 258
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 30.6 bits (69), Expect = 0.49
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 90 PQNLSTGFHNKKLRRLPHIFTRVLELPFRSDADVAVEESPDYFKFVAETDGMGEVRAHMV 149
+LS F + +P + + + + + +T +VR +
Sbjct: 256 EGDLSAEFTPLSVTVVPDVTKGDWQPLIDALPNFVEQAEQAPKPITIDTHN-RQVRLFL- 313
Query: 150 EIHPGVTKIVIRPNGCVELSSL-DELELDMWRFR----LPESTRP-ELASAVFEDGELIV 203
PG K V+L+ E+ ++ R LP + + A F++ LI+
Sbjct: 314 ---PGFDK------KQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQNNYLII 364
Query: 204 T 204
+
Sbjct: 365 S 365
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 29.1 bits (65), Expect = 1.0
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 116 PFRSDADVAVEESPDYFKFVAETDGMG------EVRAHMVEIHPGVTKIVIRPNGCVELS 169
+ + D F + +V ++E+H G + +G +
Sbjct: 59 SWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVH-GKHEERQDEHGFISRE 117
Query: 170 SLDELELDMWRFRLPESTRPELASAVF-EDGELIVTVPK 207
++R+P P ++ DG L V P+
Sbjct: 118 -------FHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 29.2 bits (66), Expect = 1.1
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 203 VTVPKGGGLEGLEERDGGGGGDGSENGEFRGGGQEFMPSAPGNGGTCTISSTELFS 258
VTV GGG G GG GG GSE + + +PG T + +++
Sbjct: 115 VTVSSGGGGSG----GGGSGGGGSETTLTQSPA--TLSLSPGERATLSCRASQSVR 164
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev,
hydrolase, inosine, DNA damage, DNA repair; HET: BRU;
2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Length = 225
Score = 29.2 bits (65), Expect = 1.4
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 142 GEVRAHMVEIHPGVTKIVIRPNGCVELSSLDEL--ELDMWRFRLPESTR 188
E+ ++ G I + P +++ S L + R+PE TR
Sbjct: 163 EEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTR 211
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.4 bits (64), Expect = 2.4
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 203 VTVPKGGGLEGLEERDGGGGGDGSENGEFRGGGQEFMPSAPGN------GGTCTIS 252
VTV GG GG GG GS G GGG + + + G + ++S
Sbjct: 111 VTVSAAGG--------GGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLS 158
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 27.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 148 MVEIHPGVTKIVIR---PNGCVELSSLDELELDM 178
M E+ +VIR P+G E S++EL +D+
Sbjct: 122 MKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL 155
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 28.1 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 203 VTVPKGGGLEGLEERDGGGGGDGSENGEFRGGGQE--FMPSAPGNGGT--CTISST 254
V V GGG G GGG G Q + +PG T C S +
Sbjct: 129 VIVSSGGG--------GSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHS 176
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Bacillus subtilis}
Length = 246
Score = 28.0 bits (62), Expect = 2.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 142 GEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMW--RFRLPESTR 188
GEV + V I + ++L S ++ + + RLP R
Sbjct: 172 GEVYGRALRTRRDVKPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVR 220
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 26.9 bits (59), Expect = 4.1
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 80 LNNFNSNLRNPQNLSTGFHNKKLRRLPHIFTRVLELPFRSDADVAVEESPDYFKFVAETD 139
L + N + ++T + K R + TR L++ + V +E D +A
Sbjct: 39 LPSGERPQANQKRITTPYMTK-YERARVLGTRALQIAMCAPVMVELEGETDPLL-IA--- 93
Query: 140 GMGEVRAHMVEIHPGVTKIVIR---PNGCVELSSLDELELD 177
M E+ I+IR P+G E +DEL +
Sbjct: 94 --------MKELKARKIPIIIRRYLPDGSYEDWGVDELIIT 126
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: YES; 1.60A {Streptomyces
avermitilis}
Length = 237
Score = 27.6 bits (61), Expect = 4.4
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 142 GEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMW-RFRLPESTR 188
+ + GV + + V+L L + ++R+PE+TR
Sbjct: 167 ADEVGRALRTQSGVKPVFVSVGHRVDLDHACAHTLALTPKYRIPETTR 214
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase,
staphylococcus epidermidis ATCC structural genomics;
HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc
12228}
Length = 169
Score = 26.7 bits (59), Expect = 6.2
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 167 ELSSLDELELDMWRFRLPESTRPELASAVFEDGELI 202
+ L+ + +D + L T FED EL+
Sbjct: 32 DRYYLENVSIDRLKTILSNHTDYWNIFGAFEDDELV 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,364,680
Number of extensions: 273174
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 33
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)