RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023450
(282 letters)
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 37.7 bits (87), Expect = 3e-04
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 123 VAVEESPDYFKFVAETDGMGEVRAHMVEIHPGVTKIVIRPNGCVELSSLDELELDMW--- 179
+++ E + K +A G V + ++ + IR + + E +
Sbjct: 13 ISIIEGDQHIKVIAWLPG---VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE 69
Query: 180 ------RFRLPESTRPELASAVFEDGELIVTVPK 207
+LP + + E ASA FE+G L V +PK
Sbjct: 70 EEEIYRTIKLPATVKEENASAKFENGVLSVILPK 103
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 30.9 bits (69), Expect = 0.084
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 103 RRLPHIFTRVLELPFRSDADVAVEESPDYFKFVAETDGMG----EVRAHMVEIHPGVTKI 158
+P I E ++A + +E+P+ F A+ G+ +V + +
Sbjct: 25 SIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGER 84
Query: 159 VIRPNGCVELSSLDELELDMW--RFRLPESTRPELASAVFEDGELIVTVPK 207
+ E + RFRL E + E A E+G L VTVPK
Sbjct: 85 TKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 135
>d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 84
Score = 27.3 bits (61), Expect = 0.64
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 148 MVEIHPGVTKIVIR---PNGCVELSSLDELELDM 178
M E+ +VIR P+G E S++EL +D+
Sbjct: 51 MKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL 84
>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 291
Score = 27.7 bits (61), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 54 EETTMKVHPVPTKKRNNIAIQYFDMNLNNFNSNLRNPQNLSTG 96
MK + V +AI ++ +N + + LSTG
Sbjct: 241 ASIGMKKYFVGVNSAGKVAISAKEIKEDNIGAQVLGLFTLSTG 283
>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
Methanosarcina barkeri [TaxId: 2208]}
Length = 282
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 140 GMGEVRAHMVEIHPGVT 156
G V+ MVE HP +
Sbjct: 155 GAAVVQEMMVETHPALV 171
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 26.8 bits (59), Expect = 2.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 140 GMGEVRAHMVEIHPGVT 156
G V+ HMVE HP +
Sbjct: 141 GAAVVQEHMVETHPALV 157
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 265
Score = 26.8 bits (59), Expect = 2.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 140 GMGEVRAHMVEIHPGVT 156
G V+ HMVEIHPG+T
Sbjct: 138 GGAVVQEHMVEIHPGLT 154
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.5 bits (56), Expect = 4.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 148 MVEIHPGVTKIVIR---PNGCVELSSLDELELD 177
M E+ I+IR P+G E +DEL +
Sbjct: 94 MKELKARKIPIIIRRYLPDGSYEDWGVDELIIT 126
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 26.3 bits (58), Expect = 4.5
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 235 GQEFMPSAPGNGGTCTISSTELFSIASLAAL 265
G F PG GGTC +S + +
Sbjct: 561 GFRFPCDGPGRGGTCQVSGWDHVFLGLFWMY 591
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 24.9 bits (54), Expect = 6.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 115 LPFRSDADVAVEESPDYFKFVAE 137
LPFR D + PDYF V
Sbjct: 26 LPFRQPVDPQLLGIPDYFDIVKN 48
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 26.0 bits (55), Expect = 6.5
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 43 FSLLKESKKLEEETTMKVHPVPTKKRNNIAIQYFDMNLNNFNSNLRNPQNLSTGF-HNKK 101
FS+ +S KL+ TT V + +++ ++ N + + LS K
Sbjct: 3 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGT--EAARWLSENIASKKD 60
Query: 102 LRRL 105
L
Sbjct: 61 LEIA 64
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 26.0 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 235 GQEFMPSAPGNGGTCTISSTELFSIA 260
G F PG GGTC IS+ + F +A
Sbjct: 560 GYAFPCDGPGRGGTCDISAWDAFYLA 585
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding
(Amaranthus caudatus) [TaxId: 3567]}
Length = 153
Score = 25.2 bits (55), Expect = 7.3
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 62 PVPTKKRNNIAIQYFDMNLNNFNSNLRNP 90
P+ ++ N ++ + L ++ N
Sbjct: 99 PLYVEEGNMKKVRLLHVQLGHYTQNYTVG 127
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus
terreus [TaxId: 33178]}
Length = 123
Score = 24.9 bits (54), Expect = 8.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 145 RAHMVEIHPGVTKIVIRPNGCVELSSLDEL 174
R ++++HPG+ IV +G + EL
Sbjct: 91 RQVLLDLHPGIKAIVKDSDGQPTAVGIREL 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,159
Number of extensions: 51211
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 17
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)