Query 023453
Match_columns 282
No_of_seqs 175 out of 687
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 4.3E-56 9.3E-61 394.9 20.8 180 100-281 1-194 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.3 5.6E-12 1.2E-16 122.2 6.5 56 89-144 2-65 (371)
3 smart00271 DnaJ DnaJ molecular 99.2 4.3E-11 9.3E-16 85.5 5.6 48 91-138 1-57 (60)
4 KOG0713 Molecular chaperone (D 99.1 4.9E-11 1.1E-15 114.1 6.2 55 89-143 14-76 (336)
5 PF00226 DnaJ: DnaJ domain; I 99.1 8.9E-11 1.9E-15 85.3 6.1 52 92-143 1-61 (64)
6 PTZ00037 DnaJ_C chaperone prot 99.1 1.1E-10 2.3E-15 114.9 7.8 58 86-143 23-84 (421)
7 PRK09430 djlA Dna-J like membr 99.1 9.9E-11 2.1E-15 108.8 6.1 54 87-140 196-264 (267)
8 cd06257 DnaJ DnaJ domain or J- 99.1 1.2E-10 2.6E-15 81.6 4.9 46 92-137 1-54 (55)
9 PRK14296 chaperone protein Dna 99.1 1.5E-10 3.2E-15 112.0 6.7 56 89-144 2-64 (372)
10 PTZ00100 DnaJ chaperone protei 99.1 1.7E-10 3.6E-15 96.1 5.6 51 87-137 61-115 (116)
11 PRK14288 chaperone protein Dna 99.1 2E-10 4.3E-15 110.9 6.7 53 90-142 2-62 (369)
12 PRK14299 chaperone protein Dna 99.1 3E-10 6.5E-15 106.2 6.9 54 90-143 3-63 (291)
13 PRK14276 chaperone protein Dna 99.0 2.9E-10 6.3E-15 110.0 6.8 55 90-144 3-64 (380)
14 PRK14287 chaperone protein Dna 99.0 3.3E-10 7.2E-15 109.4 6.7 55 90-144 3-64 (371)
15 PRK14286 chaperone protein Dna 99.0 3.7E-10 8E-15 109.1 7.0 55 90-144 3-65 (372)
16 PRK14282 chaperone protein Dna 99.0 4.3E-10 9.2E-15 108.4 6.7 56 89-144 2-66 (369)
17 PRK14283 chaperone protein Dna 99.0 4.7E-10 1E-14 108.4 6.8 55 89-143 3-64 (378)
18 PRK14280 chaperone protein Dna 99.0 5E-10 1.1E-14 108.2 6.8 55 90-144 3-64 (376)
19 PRK14279 chaperone protein Dna 99.0 5.1E-10 1.1E-14 108.9 6.6 55 90-144 8-70 (392)
20 KOG0721 Molecular chaperone (D 99.0 4.6E-10 1E-14 102.2 5.7 52 88-139 96-155 (230)
21 PRK10767 chaperone protein Dna 99.0 7E-10 1.5E-14 106.8 6.8 56 89-144 2-65 (371)
22 PRK14295 chaperone protein Dna 99.0 6.6E-10 1.4E-14 108.0 6.5 51 90-140 8-66 (389)
23 PRK14294 chaperone protein Dna 99.0 8.4E-10 1.8E-14 106.2 7.1 56 89-144 2-65 (366)
24 PRK14277 chaperone protein Dna 99.0 9.6E-10 2.1E-14 106.6 6.8 55 90-144 4-66 (386)
25 PRK14300 chaperone protein Dna 98.9 1.2E-09 2.7E-14 105.4 7.0 54 91-144 3-63 (372)
26 PRK14285 chaperone protein Dna 98.9 9.6E-10 2.1E-14 106.0 6.2 52 91-142 3-62 (365)
27 PRK14297 chaperone protein Dna 98.9 1.1E-09 2.3E-14 106.0 6.5 54 90-143 3-64 (380)
28 PRK10266 curved DNA-binding pr 98.9 1.5E-09 3.3E-14 102.1 7.0 51 90-140 3-60 (306)
29 PRK14301 chaperone protein Dna 98.9 1.6E-09 3.4E-14 104.8 6.8 51 90-140 3-61 (373)
30 PRK14298 chaperone protein Dna 98.9 1.6E-09 3.5E-14 105.0 6.7 54 90-143 4-64 (377)
31 PRK14291 chaperone protein Dna 98.9 1.8E-09 3.9E-14 104.6 6.8 52 91-142 3-61 (382)
32 PRK14278 chaperone protein Dna 98.9 1.4E-09 3.1E-14 105.3 6.0 52 91-142 3-61 (378)
33 PRK14289 chaperone protein Dna 98.9 2.3E-09 4.9E-14 103.8 6.8 54 90-143 4-65 (386)
34 PRK14281 chaperone protein Dna 98.9 2.2E-09 4.7E-14 104.6 6.7 52 91-142 3-62 (397)
35 PRK14284 chaperone protein Dna 98.9 2.7E-09 5.8E-14 103.7 6.5 50 91-140 1-58 (391)
36 PHA03102 Small T antigen; Revi 98.9 3E-09 6.5E-14 92.3 5.9 56 89-144 3-64 (153)
37 TIGR02349 DnaJ_bact chaperone 98.9 3.6E-09 7.8E-14 101.1 6.5 51 92-142 1-58 (354)
38 PRK14290 chaperone protein Dna 98.8 4.6E-09 1E-13 101.1 6.3 52 91-142 3-63 (365)
39 PRK14292 chaperone protein Dna 98.8 5.1E-09 1.1E-13 100.8 6.2 52 91-142 2-60 (371)
40 PRK14293 chaperone protein Dna 98.8 6.7E-09 1.5E-13 100.3 6.7 53 91-143 3-62 (374)
41 KOG0715 Molecular chaperone (D 98.8 1E-08 2.2E-13 96.6 6.4 50 89-138 41-97 (288)
42 KOG0712 Molecular chaperone (D 98.7 1.2E-08 2.6E-13 98.2 5.7 50 90-139 3-57 (337)
43 COG2214 CbpA DnaJ-class molecu 98.7 2.4E-08 5.2E-13 84.1 6.2 56 89-144 4-68 (237)
44 KOG0719 Molecular chaperone (D 98.6 1.4E-07 3E-12 87.2 6.9 60 91-150 14-85 (264)
45 KOG0717 Molecular chaperone (D 98.5 8.9E-08 1.9E-12 95.2 5.2 54 89-142 6-68 (508)
46 TIGR03835 termin_org_DnaJ term 98.4 3.3E-07 7.1E-12 96.0 6.5 54 91-144 2-62 (871)
47 PTZ00341 Ring-infected erythro 98.4 4.4E-07 9.5E-12 97.0 6.7 60 90-149 572-640 (1136)
48 PHA02624 large T antigen; Prov 98.4 2.5E-07 5.4E-12 95.2 4.7 59 87-145 7-71 (647)
49 KOG0691 Molecular chaperone (D 98.4 5.3E-07 1.2E-11 85.6 5.8 61 90-150 4-74 (296)
50 KOG0716 Molecular chaperone (D 98.3 9.1E-07 2E-11 83.1 5.2 54 90-144 30-91 (279)
51 COG5407 SEC63 Preprotein trans 98.3 7.5E-07 1.6E-11 88.9 4.7 56 89-144 96-164 (610)
52 KOG0718 Molecular chaperone (D 98.2 1.4E-06 3.1E-11 87.0 5.6 56 88-143 6-72 (546)
53 PRK05014 hscB co-chaperone Hsc 98.2 2.2E-06 4.9E-11 75.1 6.1 54 91-144 1-69 (171)
54 PRK01356 hscB co-chaperone Hsc 98.0 8.8E-06 1.9E-10 71.2 6.2 54 91-144 2-68 (166)
55 PRK00294 hscB co-chaperone Hsc 98.0 1.4E-05 3.1E-10 70.5 6.5 57 88-144 1-72 (173)
56 PRK03578 hscB co-chaperone Hsc 97.9 1.9E-05 4.2E-10 69.7 6.4 54 91-144 6-74 (176)
57 KOG0720 Molecular chaperone (D 97.9 8.4E-06 1.8E-10 81.3 3.8 71 68-138 211-289 (490)
58 KOG0624 dsRNA-activated protei 97.9 1.4E-05 3.1E-10 78.2 4.9 55 89-144 392-457 (504)
59 KOG0722 Molecular chaperone (D 97.7 1.5E-05 3.4E-10 74.9 2.6 49 90-138 32-87 (329)
60 KOG0568 Molecular chaperone (D 97.7 7.8E-05 1.7E-09 69.6 6.2 52 92-143 48-106 (342)
61 KOG0714 Molecular chaperone (D 97.5 7.9E-05 1.7E-09 66.1 3.7 34 90-123 2-35 (306)
62 KOG0723 Molecular chaperone (D 97.3 0.00032 6.9E-09 58.1 4.5 53 86-138 51-107 (112)
63 COG1076 DjlA DnaJ-domain-conta 97.3 0.00018 4E-09 62.9 3.3 46 91-136 113-173 (174)
64 KOG0550 Molecular chaperone (D 97.2 0.00036 7.7E-09 69.6 4.1 54 91-144 373-435 (486)
65 KOG1789 Endocytosis protein RM 97.0 0.0013 2.8E-08 71.9 6.2 73 66-142 1260-1341(2235)
66 KOG1150 Predicted molecular ch 96.9 0.0013 2.8E-08 60.3 4.7 54 91-144 53-115 (250)
67 PF13446 RPT: A repeated domai 96.7 0.0035 7.6E-08 45.9 4.7 50 88-140 2-51 (62)
68 PRK01773 hscB co-chaperone Hsc 96.6 0.0054 1.2E-07 54.3 6.3 54 91-144 2-70 (173)
69 TIGR00714 hscB Fe-S protein as 95.6 0.022 4.8E-07 49.4 5.1 42 103-144 3-57 (157)
70 PF03656 Pam16: Pam16; InterP 94.1 0.062 1.4E-06 45.7 3.9 57 87-144 54-114 (127)
71 COG5269 ZUO1 Ribosome-associat 91.7 0.27 5.8E-06 47.4 4.8 58 89-147 41-111 (379)
72 PF06570 DUF1129: Protein of u 91.5 9.8 0.00021 34.0 16.4 38 108-149 10-47 (206)
73 PRK07668 hypothetical protein; 89.3 20 0.00043 33.9 17.2 127 108-245 10-161 (254)
74 PF11833 DUF3353: Protein of u 87.5 7.8 0.00017 35.0 10.6 60 209-271 127-187 (194)
75 COG4858 Uncharacterized membra 87.2 25 0.00053 32.5 14.7 33 108-140 24-56 (226)
76 PF05884 ZYG-11_interact: Inte 70.2 89 0.0019 30.5 12.0 38 215-252 154-192 (299)
77 PRK11056 hypothetical protein; 69.3 40 0.00086 28.8 8.4 66 207-278 41-109 (120)
78 COG5552 Uncharacterized conser 68.1 15 0.00033 29.2 5.3 45 93-137 5-53 (88)
79 PF06738 DUF1212: Protein of u 64.1 96 0.0021 26.8 12.9 53 191-244 116-170 (193)
80 PF04341 DUF485: Protein of un 62.0 37 0.00081 26.8 6.6 60 219-280 12-72 (91)
81 PRK06926 flagellar motor prote 61.8 67 0.0015 30.6 9.4 52 104-159 57-109 (271)
82 PF07226 DUF1422: Protein of u 60.9 52 0.0011 27.9 7.5 66 207-278 41-109 (117)
83 PRK12482 flagellar motor prote 59.5 84 0.0018 30.2 9.7 55 104-162 50-108 (287)
84 PF11460 DUF3007: Protein of u 58.6 7.4 0.00016 32.3 2.1 53 225-282 4-56 (104)
85 PF05251 UPF0197: Uncharacteri 58.1 20 0.00044 28.3 4.4 25 206-230 24-54 (77)
86 PF07331 TctB: Tripartite tric 55.8 1.1E+02 0.0024 24.8 9.0 61 178-241 71-131 (141)
87 PRK06743 flagellar motor prote 53.4 1.6E+02 0.0035 27.8 10.3 53 104-160 49-102 (254)
88 TIGR03818 MotA1 flagellar moto 51.4 1.4E+02 0.0031 28.4 9.8 52 104-159 50-105 (282)
89 PF10041 DUF2277: Uncharacteri 50.3 33 0.00071 27.2 4.4 25 97-121 9-33 (78)
90 cd02433 Nodulin-21_like_2 Nodu 48.3 1.4E+02 0.0031 27.6 9.0 23 222-244 210-232 (234)
91 PF12597 DUF3767: Protein of u 47.0 28 0.00061 29.1 3.9 31 212-244 55-85 (118)
92 PF01102 Glycophorin_A: Glycop 46.6 32 0.0007 29.2 4.2 14 181-194 66-79 (122)
93 KOG4452 Predicted membrane pro 45.1 35 0.00076 26.7 3.8 20 262-281 52-71 (79)
94 PF13105 DUF3959: Protein of u 42.6 59 0.0013 30.1 5.4 30 219-248 120-149 (239)
95 PRK09110 flagellar motor prote 41.6 3.2E+02 0.007 26.1 11.2 53 104-160 50-106 (283)
96 COG1294 AppB Cytochrome bd-typ 40.4 3.8E+02 0.0082 26.6 11.1 64 209-272 248-316 (346)
97 PF04932 Wzy_C: O-Antigen liga 39.9 71 0.0015 26.0 5.2 31 192-222 8-38 (163)
98 PF03729 DUF308: Short repeat 39.8 97 0.0021 21.8 5.3 58 183-240 3-69 (72)
99 PF11744 ALMT: Aluminium activ 39.6 80 0.0017 31.8 6.4 13 263-275 93-105 (406)
100 PF10749 DUF2534: Protein of u 38.9 1E+02 0.0022 24.8 5.6 52 218-274 9-63 (85)
101 cd02434 Nodulin-21_like_3 Nodu 38.7 2.4E+02 0.0052 25.8 8.9 23 222-244 201-223 (225)
102 PRK10263 DNA translocase FtsK; 38.3 51 0.0011 38.0 5.2 9 270-278 166-174 (1355)
103 PF13807 GNVR: G-rich domain o 38.3 1.1E+02 0.0023 23.3 5.6 62 128-194 15-76 (82)
104 PRK05771 V-type ATP synthase s 38.2 1.4E+02 0.0031 31.1 8.3 19 230-248 399-417 (646)
105 PF14362 DUF4407: Domain of un 37.7 1.8E+02 0.004 27.1 8.2 25 222-246 78-102 (301)
106 TIGR00931 antiport_nhaC Na+/H+ 37.3 2E+02 0.0043 29.2 8.8 30 224-253 63-92 (454)
107 cd02435 CCC1 CCC1. CCC1: This 35.9 2.3E+02 0.0051 26.3 8.5 22 222-243 218-239 (241)
108 PF11085 YqhR: Conserved membr 35.4 1.5E+02 0.0033 26.8 6.8 59 212-276 85-145 (173)
109 PTZ00352 60S ribosomal protein 35.4 57 0.0012 30.3 4.2 68 82-149 121-201 (212)
110 COG3763 Uncharacterized protei 34.8 53 0.0011 25.7 3.3 23 224-246 3-25 (71)
111 TIGR00801 ncs2 uracil-xanthine 34.6 3E+02 0.0065 27.2 9.5 41 204-245 165-205 (415)
112 PF11368 DUF3169: Protein of u 34.6 87 0.0019 28.7 5.4 28 219-246 3-30 (248)
113 PF14159 CAAD: CAAD domains of 34.4 1.6E+02 0.0034 23.5 6.2 56 218-281 12-68 (90)
114 cd06572 Histidinol_dh Histidin 34.3 55 0.0012 32.9 4.3 39 102-148 36-74 (390)
115 TIGR02230 ATPase_gene1 F0F1-AT 34.1 75 0.0016 26.1 4.3 21 224-244 70-90 (100)
116 TIGR01337 apcB allophycocyanin 33.8 65 0.0014 28.5 4.2 78 57-138 80-160 (167)
117 TIGR01191 ccmC heme exporter p 33.6 2.5E+02 0.0054 25.2 8.0 59 208-270 29-91 (184)
118 PF04632 FUSC: Fusaric acid re 33.2 5.4E+02 0.012 26.2 15.2 22 232-253 393-414 (650)
119 COG0141 HisD Histidinol dehydr 33.0 82 0.0018 32.1 5.3 38 103-148 61-98 (425)
120 TIGR03144 cytochr_II_ccsB cyto 32.8 2.4E+02 0.0052 25.8 8.0 43 224-270 151-193 (243)
121 PRK08124 flagellar motor prote 31.9 3.5E+02 0.0076 25.4 9.0 17 104-120 52-68 (263)
122 PF07281 INSIG: Insulin-induce 31.7 3.2E+02 0.007 24.7 8.4 48 174-223 79-129 (193)
123 PLN02776 prenyltransferase 31.6 2.9E+02 0.0062 27.3 8.6 16 261-277 150-165 (341)
124 COG0109 CyoE Polyprenyltransfe 31.5 66 0.0014 31.4 4.2 17 259-276 172-188 (304)
125 PF01988 VIT1: VIT family; In 30.4 4E+02 0.0086 23.8 10.3 23 221-243 190-212 (213)
126 PF11947 DUF3464: Protein of u 30.1 2E+02 0.0044 25.3 6.6 36 203-238 72-110 (153)
127 TIGR00069 hisD histidinol dehy 29.7 76 0.0016 32.0 4.4 38 103-148 33-70 (393)
128 COG0730 Predicted permeases [G 29.3 3.2E+02 0.0068 24.7 8.1 24 224-247 72-95 (258)
129 PRK11677 hypothetical protein; 29.1 50 0.0011 28.4 2.6 20 229-248 4-23 (134)
130 PF00815 Histidinol_dh: Histid 28.9 73 0.0016 32.3 4.1 38 102-147 49-86 (412)
131 PRK11427 multidrug efflux syst 28.7 2.4E+02 0.0053 30.4 8.1 81 174-267 27-107 (683)
132 COG1289 Predicted membrane pro 28.4 2.8E+02 0.006 29.2 8.5 57 189-245 23-79 (674)
133 KOG3442 Uncharacterized conser 28.2 1.2E+02 0.0027 26.2 4.8 48 88-135 56-107 (132)
134 PF06181 DUF989: Protein of un 27.6 2.1E+02 0.0046 28.0 6.8 25 222-246 117-141 (300)
135 PF14256 YwiC: YwiC-like prote 27.6 3.7E+02 0.0081 22.6 7.6 58 162-221 43-105 (129)
136 PRK00877 hisD bifunctional his 27.2 87 0.0019 31.9 4.4 39 102-148 64-102 (425)
137 PRK12447 histidinol dehydrogen 26.9 92 0.002 31.7 4.5 39 102-148 57-95 (426)
138 PRK13770 histidinol dehydrogen 26.7 92 0.002 31.6 4.4 37 103-147 57-93 (416)
139 PLN00014 light-harvesting-like 26.1 2.4E+02 0.0052 26.8 6.7 65 130-195 111-181 (250)
140 PRK01844 hypothetical protein; 26.1 91 0.002 24.4 3.4 23 224-246 3-25 (72)
141 PRK00523 hypothetical protein; 26.0 92 0.002 24.4 3.3 22 225-246 5-26 (72)
142 CHL00089 apcF allophycocyanin 25.9 1.1E+02 0.0023 27.4 4.2 78 57-138 81-162 (169)
143 COG3167 PilO Tfp pilus assembl 25.8 1.1E+02 0.0024 28.3 4.3 35 103-137 56-93 (211)
144 PF08552 Kei1: Inositolphospho 25.0 5.2E+02 0.011 23.4 11.8 22 258-279 147-168 (189)
145 PRK10621 hypothetical protein; 24.9 4.2E+02 0.0091 24.2 8.2 23 225-247 77-99 (266)
146 COG4125 Predicted membrane pro 24.7 4.9E+02 0.011 23.0 8.6 71 200-281 41-127 (149)
147 cd02637 R3H_PARN R3H domain of 24.4 60 0.0013 24.5 2.1 47 107-154 3-49 (65)
148 KOG0431 Auxilin-like protein a 24.3 68 0.0015 32.7 3.0 31 94-124 391-421 (453)
149 PF06295 DUF1043: Protein of u 24.2 51 0.0011 27.6 1.8 18 231-248 2-19 (128)
150 PF01925 TauE: Sulfite exporte 24.0 3.7E+02 0.0081 23.4 7.4 42 206-247 41-85 (240)
151 PF10762 DUF2583: Protein of u 23.9 1.7E+02 0.0038 23.7 4.6 57 219-278 3-60 (89)
152 PF05957 DUF883: Bacterial pro 23.8 80 0.0017 24.6 2.8 20 222-244 71-90 (94)
153 PRK08456 flagellar motor prote 23.8 6E+02 0.013 23.7 10.0 47 104-154 52-99 (257)
154 COG2962 RarD Predicted permeas 23.7 3.1E+02 0.0068 26.7 7.2 55 183-237 131-185 (293)
155 PF13858 DUF4199: Protein of u 23.1 4.4E+02 0.0095 21.9 8.1 23 223-245 62-84 (163)
156 COG5395 Predicted membrane pro 22.8 2.2E+02 0.0048 24.4 5.3 63 211-278 26-88 (131)
157 PRK10692 hypothetical protein; 22.7 1.8E+02 0.0038 23.8 4.5 57 219-278 3-60 (92)
158 PF01578 Cytochrom_C_asm: Cyto 22.7 3.4E+02 0.0073 23.8 6.8 44 223-270 124-167 (214)
159 COG4818 Predicted membrane pro 22.3 1.7E+02 0.0036 24.4 4.4 58 212-280 18-79 (105)
160 PF14490 HHH_4: Helix-hairpin- 22.2 1.1E+02 0.0023 24.0 3.2 46 90-139 41-86 (94)
161 PF07709 SRR: Seven Residue Re 22.2 61 0.0013 17.4 1.2 11 126-136 3-13 (14)
162 COG1295 Rbn Ribonuclease BN fa 22.1 2.1E+02 0.0045 27.2 5.7 61 212-276 205-267 (303)
163 PF03613 EIID-AGA: PTS system 21.9 5.1E+02 0.011 24.6 8.2 20 105-124 47-66 (264)
164 COG2921 Uncharacterized conser 21.8 1.1E+02 0.0023 25.0 3.1 41 92-136 16-80 (90)
165 PRK10720 uracil transporter; P 21.4 2E+02 0.0042 28.8 5.6 42 203-245 157-198 (428)
166 COG3247 HdeD Uncharacterized c 21.0 3E+02 0.0064 25.0 6.1 65 179-243 22-94 (185)
167 COG3413 Predicted DNA binding 20.9 53 0.0012 29.3 1.4 52 64-122 162-213 (215)
168 PF05814 DUF843: Baculovirus p 20.8 1.8E+02 0.0039 23.3 4.2 15 125-139 65-79 (83)
169 PF12725 DUF3810: Protein of u 20.8 2.7E+02 0.0059 26.8 6.3 48 91-138 82-148 (318)
170 PHA00024 IX minor coat protein 20.7 1.3E+02 0.0029 20.2 2.8 20 227-246 4-23 (33)
171 PF03699 UPF0182: Uncharacteri 20.4 3.3E+02 0.0071 29.9 7.3 45 209-253 255-299 (774)
172 PF02674 Colicin_V: Colicin V 20.3 3.3E+02 0.0071 22.1 5.9 47 229-278 25-73 (146)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=4.3e-56 Score=394.90 Aligned_cols=180 Identities=37% Similarity=0.597 Sum_probs=169.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhh-----------hhhhhhhh
Q 023453 100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ-----------SRVMQAVM 168 (282)
Q Consensus 100 s~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~-----------~~~~~wl~ 168 (282)
||||||||||+|||++++||.+|++.+++||+|||+|+|+||++||+|||+|++++||+|+ .+.++|++
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999987 13366777
Q ss_pred hc---ccCCchHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023453 169 SR---FQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL 245 (282)
Q Consensus 169 ~~---~~~Ps~~~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L 245 (282)
+. |++|+.+++.+++++|++|++|+++++++++++||||+|+++||||||||+++++||++|++|+|++||++|+++
T Consensus 81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL 160 (194)
T ss_pred hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccCCccHHHHHHHHHHHHHHHHhhcc
Q 023453 246 MVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYL 281 (282)
Q Consensus 246 ~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssfL 281 (282)
.+.+.+.+ .++++++|+++|+++|++||++|+||
T Consensus 161 ~~~l~~~~--~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 161 ASWLPVDI--VPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred Hhhccccc--CCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 87766655 45789999999999999999999997
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.6e-12 Score=122.21 Aligned_cols=56 Identities=32% Similarity=0.408 Sum_probs=48.7
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
...|.|++|||+++||.||||+|||+|..+||||. +++++|++|||.+...+-|+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45789999999999999999999999999999993 478999999999876554433
No 3
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.18 E-value=4.3e-11 Score=85.48 Aligned_cols=48 Identities=33% Similarity=0.421 Sum_probs=43.3
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIM 138 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm 138 (282)
.|||++|||+++++.+||++||+++.++||||. +.+.+|++||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999995 347789999999754
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.9e-11 Score=114.05 Aligned_cols=55 Identities=29% Similarity=0.362 Sum_probs=48.7
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHHHhhHHhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP--------SIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~--------~~~~IEaAYD~Ilm~~L~~ 143 (282)
..+|+|++|||+.+||+.|||+|||+|..+||||+. .+.+|++||+.+...-+|+
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 458999999999999999999999999999999953 6999999999977765544
No 5
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.14 E-value=8.9e-11 Score=85.34 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=45.6
Q ss_pred ChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHhh
Q 023453 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 92 dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
|||++|||+++++.+||+++|++++.+||||. +.++.|++||+.+....-|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 69999999999999999999999999999995 35778999999987655443
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.13 E-value=1.1e-10 Score=114.94 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=50.3
Q ss_pred CCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhhHHhh
Q 023453 86 PRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 86 pr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm~~L~~ 143 (282)
..+...|+|++|||+++||.+|||+|||+|..+||||+ +++++|++|||.+....-|+
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 34567899999999999999999999999999999995 67999999999876654443
No 7
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.10 E-value=9.9e-11 Score=108.81 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=48.3
Q ss_pred CCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------------hhHHHHHHHHHHHHhhH
Q 023453 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------------PSIDAIESAHDKIIMQK 140 (282)
Q Consensus 87 r~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------------~~~~~IEaAYD~Ilm~~ 140 (282)
.++.+|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|..+|
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677999999999999999999999999999999996 25778999999987643
No 8
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.10 E-value=1.2e-10 Score=81.62 Aligned_cols=46 Identities=35% Similarity=0.460 Sum_probs=41.8
Q ss_pred ChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHHH
Q 023453 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHKP--------SIDAIESAHDKII 137 (282)
Q Consensus 92 dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~--------~~~~IEaAYD~Il 137 (282)
|||++|||+++++.+||+++|+++.++||||.. .+.+|++||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999953 3678999999864
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.5e-10 Score=111.97 Aligned_cols=56 Identities=29% Similarity=0.400 Sum_probs=48.7
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
...|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+..+.-|+.
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~ 64 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 35799999999999999999999999999999994 468899999999877654443
No 10
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.07 E-value=1.7e-10 Score=96.07 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHH
Q 023453 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKII 137 (282)
Q Consensus 87 r~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Il 137 (282)
+|+.+++|++|||+++||.|||+++|++|..+||||. +..++|++|||.++
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999999994 46889999999975
No 11
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=2e-10 Score=110.88 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 142 (282)
..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+....-|
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 3799999999999999999999999999999994 3578899999987664433
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=3e-10 Score=106.24 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=47.5
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence 4799999999999999999999999999999995 35788999999987665443
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.9e-10 Score=110.01 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=48.6
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
.+|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 4799999999999999999999999999999994 468899999999877665443
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.3e-10 Score=109.37 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=47.8
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~ 64 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHH
Confidence 4799999999999999999999999999999994 358899999998766554443
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.7e-10 Score=109.10 Aligned_cols=55 Identities=29% Similarity=0.330 Sum_probs=47.6
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4799999999999999999999999999999995 357899999998766544433
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.3e-10 Score=108.38 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=47.9
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
...|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+....-|++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 66 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHH
Confidence 34799999999999999999999999999999995 257789999998766554443
No 17
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=4.7e-10 Score=108.38 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=47.8
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
...|+|++|||+++||.+||++||++|+.+||||. +++.+|++|||.+....-|+
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 35799999999999999999999999999999995 36889999999876654443
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=5e-10 Score=108.25 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=48.1
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHH
Confidence 4799999999999999999999999999999994 468899999999876554443
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=5.1e-10 Score=108.86 Aligned_cols=55 Identities=31% Similarity=0.379 Sum_probs=47.9
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|+|++|||+++||.+|||+|||+|+.+||||. +++++|++|||.+..+.-|+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~ 70 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKE 70 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhH
Confidence 4799999999999999999999999999999984 357789999999877654443
No 20
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.6e-10 Score=102.21 Aligned_cols=52 Identities=35% Similarity=0.400 Sum_probs=46.3
Q ss_pred CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHHHhh
Q 023453 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP--------SIDAIESAHDKIIMQ 139 (282)
Q Consensus 88 ~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~--------~~~~IEaAYD~Ilm~ 139 (282)
....||||+||++|+||..|||+|||+|..+||||+. ..++|++||.++-.+
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~ 155 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK 155 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch
Confidence 4568999999999999999999999999999999973 578899999997554
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=7e-10 Score=106.79 Aligned_cols=56 Identities=32% Similarity=0.395 Sum_probs=48.0
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
...|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAA 65 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 34799999999999999999999999999999995 357789999999876554433
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=6.6e-10 Score=108.01 Aligned_cols=51 Identities=31% Similarity=0.447 Sum_probs=45.9
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhH
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQK 140 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~ 140 (282)
..|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+....
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchh
Confidence 4799999999999999999999999999999994 35789999999977653
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=8.4e-10 Score=106.25 Aligned_cols=56 Identities=30% Similarity=0.331 Sum_probs=48.7
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
...|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.|....-|+.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45799999999999999999999999999999994 357889999999877655544
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=9.6e-10 Score=106.63 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=47.8
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 66 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3699999999999999999999999999999994 368899999999776554443
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.2e-09 Score=105.40 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=47.5
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
.|+|++|||+++||.+||++||++|.++||||. +++++|++|||.+..+..|..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 63 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhH
Confidence 699999999999999999999999999999993 368899999999877554433
No 26
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=9.6e-10 Score=106.01 Aligned_cols=52 Identities=31% Similarity=0.382 Sum_probs=46.2
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++||++|+.+||||. +++++|++|||.+..+.-|
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 62 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchh
Confidence 699999999999999999999999999999995 3588999999987765433
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.1e-09 Score=106.00 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 4699999999999999999999999999999994 35778999999877655443
No 28
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.94 E-value=1.5e-09 Score=102.10 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhH
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQK 140 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~ 140 (282)
..|+|++|||+++||.+||++||++|+.+||||. +++++|++|||.+....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 4799999999999999999999999999999993 35789999999876543
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.6e-09 Score=104.80 Aligned_cols=51 Identities=31% Similarity=0.427 Sum_probs=45.7
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhH
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQK 140 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~ 140 (282)
..|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+....
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchh
Confidence 4799999999999999999999999999999995 25789999999876654
No 30
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=1.6e-09 Score=104.96 Aligned_cols=54 Identities=31% Similarity=0.362 Sum_probs=46.7
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
..|+|++|||+++||.+||++||++|.++||||. +++++|++|||.+....-|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 3699999999999999999999999999999995 35789999999876654443
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=1.8e-09 Score=104.62 Aligned_cols=52 Identities=31% Similarity=0.378 Sum_probs=46.4
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 699999999999999999999999999999994 4688999999987765444
No 32
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=1.4e-09 Score=105.25 Aligned_cols=52 Identities=29% Similarity=0.310 Sum_probs=45.7
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++||++|..+||||. +++++|+.|||.+.....|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 689999999999999999999999999999994 3578899999987654433
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=2.3e-09 Score=103.84 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
..|+|++|||+++||.|||++||++|..+||||. +++++|++|||.+.++..|+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4799999999999999999999999999999995 35789999999988764443
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=2.2e-09 Score=104.58 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=46.3
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 699999999999999999999999999999994 3578999999998765544
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.7e-09 Score=103.68 Aligned_cols=50 Identities=32% Similarity=0.384 Sum_probs=45.2
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhH
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQK 140 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~ 140 (282)
.|+|++|||+++||.+|||+||++|..+||||. +++++|++|||.+....
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 58 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQ 58 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHH
Confidence 389999999999999999999999999999994 35889999999987653
No 36
>PHA03102 Small T antigen; Reviewed
Probab=98.87 E-value=3e-09 Score=92.27 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=50.3
Q ss_pred CCCChhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREA--SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~A--S~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm~~L~~R 144 (282)
+.+..|++|||+++| |.+|||+||+++..+||||+ +++++|+.||+.|.....+.+
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 456789999999999 99999999999999999995 578999999999988777766
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.86 E-value=3.6e-09 Score=101.09 Aligned_cols=51 Identities=33% Similarity=0.434 Sum_probs=44.8
Q ss_pred ChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHh
Q 023453 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 92 dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 142 (282)
|+|++|||+++||.+||++||++|..+||||. +++++|++|||.+.....|
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 58 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence 78999999999999999999999999999995 3578899999986655433
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=4.6e-09 Score=101.15 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=45.6
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+.....|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 699999999999999999999999999999984 3467899999997665444
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=5.1e-09 Score=100.85 Aligned_cols=52 Identities=31% Similarity=0.346 Sum_probs=45.5
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.|+|++|||+++||.+||++||++|.++||||. +++++|++|||.+.....|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r 60 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKR 60 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhh
Confidence 489999999999999999999999999999994 3578899999987654433
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=6.7e-09 Score=100.30 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=46.8
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
.|+|++|||+++||.+||++||++|..+||||. +++++|+.|||.+..+..|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 689999999999999999999999999999994 46889999999877654443
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1e-08 Score=96.60 Aligned_cols=50 Identities=32% Similarity=0.378 Sum_probs=44.9
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIM 138 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm 138 (282)
..+|||++|||+++|+..|||.||.+|.++||||. +++.+|.+|||.+..
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd 97 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSD 97 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcC
Confidence 33499999999999999999999999999999994 468999999999654
No 42
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-08 Score=98.20 Aligned_cols=50 Identities=34% Similarity=0.379 Sum_probs=46.0
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----PSIDAIESAHDKIIMQ 139 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-----~~~~~IEaAYD~Ilm~ 139 (282)
...-|.+|||+++||.+|||+|||+|..+||||+ +++.+|..|||.+...
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ 57 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDP 57 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 4678999999999999999999999999999996 5899999999998763
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-08 Score=84.12 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=48.7
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
+..|+|++|||+++|+.+||++||+++..+||||. +++.+|++||+.+.....+..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~ 68 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAE 68 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 35789999999999999999999999999999983 467889999999877665543
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-07 Score=87.20 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=50.6
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhhHHhhh--hCCCCc
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHKP----------SIDAIESAHDKIIMQKFYER--RNPKID 150 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~----------~~~~IEaAYD~Ilm~~L~~R--~~Gki~ 150 (282)
.|||++|||.++|+..||++||++|..+||||.. ++++++.||..+-.+.-|+= +.|+|.
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4999999999999999999999999999999953 58899999988755443322 788885
No 45
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.9e-08 Score=95.17 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=47.4
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFY 142 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~ 142 (282)
.-.+.||+|||+.+|+.+||+++||+|..|||||+ ++++.|++|||.+...+-|
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 34689999999999999999999999999999996 3688999999998665443
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.43 E-value=3.3e-07 Score=96.02 Aligned_cols=54 Identities=35% Similarity=0.451 Sum_probs=47.5
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh-------hHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHKP-------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~-------~~~~IEaAYD~Ilm~~L~~R 144 (282)
+|+|++|||+++|+.+||++||++|.++||||.. ++.+|+.||+.+.....|.+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~ 62 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999999999999999999999999962 57889999999876655544
No 47
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.40 E-value=4.4e-07 Score=97.04 Aligned_cols=60 Identities=18% Similarity=0.036 Sum_probs=52.0
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhhh--hCCCC
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER--RNPKI 149 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R--~~Gki 149 (282)
..|.|++|||+++||.+||++||++|..+||||. .++++|..||+.+.....|++ +-|+-
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 3689999999999999999999999999999995 368899999999888777766 44543
No 48
>PHA02624 large T antigen; Provisional
Probab=98.40 E-value=2.5e-07 Score=95.24 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=51.7
Q ss_pred CCCCCChhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhhHHhhhh
Q 023453 87 RINVRDPYKRLGISREA--SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYERR 145 (282)
Q Consensus 87 r~~~~dPYe~LGVs~~A--S~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm~~L~~R~ 145 (282)
|.+.++.|++|||+++| |.+|||+||+++..+||||. +++++|+.||+.+...--+.|.
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45678999999999999 99999999999999999984 6799999999998776655664
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5.3e-07 Score=85.64 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh--hCCCCc
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER--RNPKID 150 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R--~~Gki~ 150 (282)
..|+|.+|||+++|+.+||++||+.+..+||||+ +++.++-.||+.+....+|.+ +-|+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999995 368899999999999988877 444443
No 50
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.1e-07 Score=83.06 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=46.0
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhhHHhhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
..|-|.+||+.++|+.||||+|||+|+++||||+ +++.+||.||.. +.++-++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~I-LsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAI-LSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHH-hcChhhhh
Confidence 4789999999999999999999999999999984 378999999965 55554443
No 51
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.27 E-value=7.5e-07 Score=88.86 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=47.4
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~-------------~~~~IEaAYD~Ilm~~L~~R 144 (282)
...||||+|||+.++|.+|||++||+|.-+||||+. +-.+|.+||..+-.+.-|+-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 458999999999999999999999999999999952 34579999999877655443
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.4e-06 Score=86.98 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhhHHhh
Q 023453 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 88 ~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-----------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
.++.|-|..|+|++|||.|||++||+++.+-||||+ +.+.+|..|||.+...+-|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 345689999999999999999999999999999984 24778999999988766543
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.22 E-value=2.2e-06 Score=75.13 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=44.6
Q ss_pred CChhhhhCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~--AS~eEI~~A~~rL~~~y~~D~~-------------~~~~IEaAYD~Ilm~~L~~R 144 (282)
.|+|++|||++. ++.++|+++|+++.++||||.- ....||.||+.+...-.|.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 489999999996 7789999999999999999951 24569999999776555544
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.05 E-value=8.8e-06 Score=71.22 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=44.4
Q ss_pred CChhhhhCCCCC--CCHHHHHHHHHHHHHHhCCChh-----h------HHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-----S------IDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~--AS~eEI~~A~~rL~~~y~~D~~-----~------~~~IEaAYD~Ilm~~L~~R 144 (282)
.|+|++||++++ ++.++|+++|+++..+||||.- + ...||.||+.+...-.|..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~ 68 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAE 68 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999997 8899999999999999999952 1 3589999998665444443
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.99 E-value=1.4e-05 Score=70.48 Aligned_cols=57 Identities=5% Similarity=0.046 Sum_probs=46.6
Q ss_pred CCCCChhhhhCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhhHHhhh
Q 023453 88 INVRDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 88 ~~~~dPYe~LGVs~~--AS~eEI~~A~~rL~~~y~~D~~-------------~~~~IEaAYD~Ilm~~L~~R 144 (282)
|...|+|++||+++. .+.++|+++|+++.++||||.- ....||.||+.+.....|..
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~ 72 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRAR 72 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHH
Confidence 345899999999999 5579999999999999999952 24689999999766554443
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.94 E-value=1.9e-05 Score=69.71 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=44.7
Q ss_pred CChhhhhCCCCC--CCHHHHHHHHHHHHHHhCCChh-------h------HHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------S------IDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~--AS~eEI~~A~~rL~~~y~~D~~-------~------~~~IEaAYD~Ilm~~L~~R 144 (282)
.|+|++|||++. ++.++|+++|++|.++||||.- + ...||.||+.+...-.|.+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 799999999995 6788999999999999999941 1 3689999999766554544
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=8.4e-06 Score=81.31 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=55.7
Q ss_pred ceeccCCCCCCCC-CCCCCCCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 023453 68 CAMDASYGDMSDG-STAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIM 138 (282)
Q Consensus 68 ~a~~as~G~~~~~-~~~~fpr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm 138 (282)
|..+..+-..+.. .+..++..+..|||.+|||.+|.|.|+||+.|+++..--|||+ +.++.+..|||.|..
T Consensus 211 ~~~e~~va~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 211 CKKEIPVATNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred cccccccccchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc
Confidence 4444444433322 3456677779999999999999999999999999999999996 457789999999865
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.88 E-value=1.4e-05 Score=78.25 Aligned_cols=55 Identities=33% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhhHHhhh
Q 023453 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 89 ~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-----------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
.-.|.|++|||.++||..||-+|||++.+++|||. +++-.|-+|-+.+- +.-++|
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLs-d~EkRr 457 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLS-DPEKRR 457 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhc-CHHHHh
Confidence 34699999999999999999999999999999982 23556888888854 444444
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.5e-05 Score=74.92 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIM 138 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm 138 (282)
.+|=|++|||+++|+..||.+||+.|.++||||. +.+..|-.||+.+..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKD 87 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccc
Confidence 3789999999999999999999999999999994 246778888877544
No 60
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=7.8e-05 Score=69.59 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=47.3
Q ss_pred ChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhhHHhh
Q 023453 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (282)
Q Consensus 92 dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 143 (282)
.-|.+|||.++|+.|||+.||-.|+++||||. +.+.+|++||.+++.+.+.+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999983 36889999999999988765
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=7.9e-05 Score=66.05 Aligned_cols=34 Identities=50% Similarity=0.609 Sum_probs=32.4
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK 123 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~ 123 (282)
..|.|++|||.++|+.+||++||++++.+||+|+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk 35 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDK 35 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCC
Confidence 3789999999999999999999999999999996
No 62
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00032 Score=58.15 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=48.1
Q ss_pred CCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHh
Q 023453 86 PRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIM 138 (282)
Q Consensus 86 pr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm 138 (282)
|+|+....-.+|||+|.++.+-||+|.+|..-.+|||. -...+||+|+|.+..
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999995 357789999998644
No 63
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00018 Score=62.86 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=41.9
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh---------------hHHHHHHHHHHH
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHKP---------------SIDAIESAHDKI 136 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~---------------~~~~IEaAYD~I 136 (282)
.|+|++||+.+.+++++|+++|+.++.++|+|.. ++++|++||+.|
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999853 577899999875
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00036 Score=69.57 Aligned_cols=54 Identities=31% Similarity=0.286 Sum_probs=44.7
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
.|.|++|||+.+||.+||++||+++.-.||||. .++.+|-+||..+-..--+.|
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 689999999999999999999999999999994 257789999977544333333
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0013 Score=71.87 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred ccceeccCCCCCCCCCCCCCCCCCCCChhhhhCCCCC----CCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHH
Q 023453 66 IKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISRE----ASEEEIQAARNFLVQKYAGHK-----PSIDAIESAHDKI 136 (282)
Q Consensus 66 ~~~a~~as~G~~~~~~~~~fpr~~~~dPYe~LGVs~~----AS~eEI~~A~~rL~~~y~~D~-----~~~~~IEaAYD~I 136 (282)
++|-.++=+- +-+..+|.|++.+.||+|.|+-+ ..-+.|+++|.+|..+||||+ +++++|++|||-+
T Consensus 1260 L~~~L~~W~~----ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L 1335 (2235)
T KOG1789|consen 1260 LRCCLATWYN----ELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELL 1335 (2235)
T ss_pred HHHHHHHHHH----HHhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHH
Confidence 4555544333 24466788999999999998743 344789999999999999996 4799999999997
Q ss_pred HhhHHh
Q 023453 137 IMQKFY 142 (282)
Q Consensus 137 lm~~L~ 142 (282)
-.+..+
T Consensus 1336 ~~~ta~ 1341 (2235)
T KOG1789|consen 1336 SSETAN 1341 (2235)
T ss_pred HHHHhh
Confidence 644433
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0013 Score=60.33 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=46.8
Q ss_pred CChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh---------hHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHKP---------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~---------~~~~IEaAYD~Ilm~~L~~R 144 (282)
-|||++|.|.|+.+.|+|++-|++|.---|||+. .++.|.+||..+..+..++|
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6899999999999999999999999988899842 36678888888877777776
No 67
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.65 E-value=0.0035 Score=45.92 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=41.3
Q ss_pred CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhH
Q 023453 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQK 140 (282)
Q Consensus 88 ~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~ 140 (282)
|+.++.|+.|||+++.+.|+|..+|+..+.. |+.......+|-..|-+.|
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~---~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVND---DPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHHc---ChHhHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999999984 5566667777777776643
No 68
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.58 E-value=0.0054 Score=54.25 Aligned_cols=54 Identities=6% Similarity=0.053 Sum_probs=44.3
Q ss_pred CChhhhhCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhhHHhhh
Q 023453 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 91 ~dPYe~LGVs~~--AS~eEI~~A~~rL~~~y~~D~~-------------~~~~IEaAYD~Ilm~~L~~R 144 (282)
.|+|+++|+++. .+..++++.|++|.+++|||.- .-..||.||..+...-.|..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~ 70 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAE 70 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHH
Confidence 589999999998 8999999999999999999941 24579999999655443443
No 69
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=95.57 E-value=0.022 Score=49.42 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCh-------------hhHHHHHHHHHHHHhhHHhhh
Q 023453 103 ASEEEIQAARNFLVQKYAGHK-------------PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 103 AS~eEI~~A~~rL~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L~~R 144 (282)
-+.++|+++|+++..+||||. ...+.||.||+.+...-.|..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ 57 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAE 57 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHH
Confidence 467899999999999999994 135679999999765444433
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.10 E-value=0.062 Score=45.66 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhhHHhhh
Q 023453 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYER 144 (282)
Q Consensus 87 r~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm~~L~~R 144 (282)
.|..+...++|+|+++.+-|||++-|++|...+++++ ---.+|..|.|.|..+ |+.+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E-l~~~ 114 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE-LKEE 114 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 5778899999999999999999999999999988763 2466899999997654 3443
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.27 Score=47.37 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=46.4
Q ss_pred CCCChhhhhCCCC---CCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhhHHhhhhCC
Q 023453 89 NVRDPYKRLGISR---EASEEEIQAARNFLVQKYAGHKP----------SIDAIESAHDKIIMQKFYERRNP 147 (282)
Q Consensus 89 ~~~dPYe~LGVs~---~AS~eEI~~A~~rL~~~y~~D~~----------~~~~IEaAYD~Ilm~~L~~R~~G 147 (282)
.-.|.|.+||++. -|..+.|.+|.++.+-+||||.. -+.-|..|||.+-. +-+++|=-
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D-~~~R~qyD 111 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD-RKLRLQYD 111 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhcc-HHHHhhcc
Confidence 3479999999986 58889999999999999999965 37789999998654 44444433
No 72
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=91.53 E-value=9.8 Score=33.98 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCC
Q 023453 108 IQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKI 149 (282)
Q Consensus 108 I~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki 149 (282)
+.+..+.|.+....|++..+-+++..|.|+. ..++|+.
T Consensus 10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~Lle----aQk~G~t 47 (206)
T PF06570_consen 10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLE----AQKKGKT 47 (206)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHhCCCc
Confidence 4455666644434444555556666666655 6677764
No 73
>PRK07668 hypothetical protein; Validated
Probab=89.31 E-value=20 Score=33.93 Aligned_cols=127 Identities=12% Similarity=0.258 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCCccch----hh-hhhhhhhhhhhhhhcccCCc-hHHHHH
Q 023453 108 IQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKK----KV-REVRQSRVMQAVMSRFQTPS-TKIIIK 181 (282)
Q Consensus 108 I~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk----~i-r~ad~~~~~~wl~~~~~~Ps-~~~i~~ 181 (282)
+.+..+.|..+.-+|+++.+-+++.-|.++. ..++||- +.+ +- .++++ +..-.+.+. ......
T Consensus 10 l~~L~~yL~~~glseeeieeiL~Ei~~hLlE----gQk~GkT-A~~IfG~sPk~yA~E------L~~~~~~~~~~~~~~l 78 (254)
T PRK07668 10 LDDTRVYLIAKGIKEEDIESFLEDAELHLIE----GEKDGKT-VEDIFGDSPKEYANE------LVKEMEVDRKENIKLI 78 (254)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----HHHcCCc-HHHHhCCCHHHHHHH------HhcccCCCcchHHHHH
Confidence 4445555555545556666667777777665 5677764 211 11 12322 111112222 333344
Q ss_pred HHHHHHHHHHHHH---hccCCCCC-----------hHHHHHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHHHHHHh
Q 023453 182 TSVAFLVIGVLTV---LFPTEEGP-----------TLQVAISLIATMYFIH-----ERLKSKIRAFLYGAGAFIFSWLLG 242 (282)
Q Consensus 182 ~~~~f~~L~~~~l---~~~~~~~~-----------~LqLAls~~a~iYfL~-----rK~kr~~RA~~l~lg~L~vG~~lG 242 (282)
..++.+.++.|++ +++..+++ ++.+.+++...++.++ .+.++..+......+.+..+++++
T Consensus 79 ~~~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~~~~~p~~l~i~ 158 (254)
T PRK07668 79 LFIIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIPMLLIVA 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 5666777777776 32331322 1234444555555554 233444455555555555566555
Q ss_pred Hhh
Q 023453 243 TFL 245 (282)
Q Consensus 243 s~L 245 (282)
..+
T Consensus 159 i~~ 161 (254)
T PRK07668 159 IMF 161 (254)
T ss_pred HHH
Confidence 543
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.52 E-value=7.8 Score=35.04 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=40.0
Q ss_pred HHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHH
Q 023453 209 SLIATMY-FIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITY 271 (282)
Q Consensus 209 s~~a~iY-fL~rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~ 271 (282)
+++.+.+ ..++-+|.++-+++-=+.++++|.++.+++.+.++|.. .. +--...+.+.+.+
T Consensus 127 ~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~-~s--~~~~~sl~~~i~l 187 (194)
T PF11833_consen 127 ACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGP-WS--PEQLVSLFTYILL 187 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-CC--HHHHHHHHHHHHH
Confidence 4566677 44555677888888888889999999999888877722 22 2344444444443
No 75
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=87.21 E-value=25 Score=32.54 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhH
Q 023453 108 IQAARNFLVQKYAGHKPSIDAIESAHDKIIMQK 140 (282)
Q Consensus 108 I~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~ 140 (282)
|-.+-+++...++.|++...-+|++..+|+.++
T Consensus 24 vh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 24 VHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 444555666666677777777899999988754
No 76
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=70.19 E-value=89 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHhhhhhhH-HHHHHHHHHHHHHHHHhHhhhhcccCC
Q 023453 215 YFIHERLKSKI-RAFLYGAGAFIFSWLLGTFLMVAVIPP 252 (282)
Q Consensus 215 YfL~rK~kr~~-RA~~l~lg~L~vG~~lGs~L~~~~ip~ 252 (282)
|.+|++-+..- .-+.+-+.+++=|.+.|..+....++.
T Consensus 154 y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~l~s 192 (299)
T PF05884_consen 154 YYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLYLSS 192 (299)
T ss_pred hhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 35555544442 234466778888999999887765553
No 77
>PRK11056 hypothetical protein; Provisional
Probab=69.31 E-value=40 Score=28.75 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHh
Q 023453 207 AISLIATMYFIHERLKS---KIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 207 Als~~a~iYfL~rK~kr---~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~s 278 (282)
-|+++..+|-++++-.+ .----.++++++++|.+..+-+.-..-|.+ |++-...+.+ ..+++|++-
T Consensus 41 lIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPei----GSNF~p~il~--~~L~~Wi~~ 109 (120)
T PRK11056 41 LIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEI----GSNFFPAVLS--VILVFWIGR 109 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCccc----ccchHHHHHH--HHHHHHHHH
Confidence 34678888888776433 234556889999999999997655555666 3333333333 346678764
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=68.08 E-value=15 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred hhhhhCCCCCCCHHHHHHHHHHHHHHhC----CChhhHHHHHHHHHHHH
Q 023453 93 PYKRLGISREASEEEIQAARNFLVQKYA----GHKPSIDAIESAHDKII 137 (282)
Q Consensus 93 PYe~LGVs~~AS~eEI~~A~~rL~~~y~----~D~~~~~~IEaAYD~Il 137 (282)
=-+..|..|-|+.+||+.|-...+++.. |.+...++.|+|.|.|-
T Consensus 5 Ik~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia 53 (88)
T COG5552 5 IKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA 53 (88)
T ss_pred hHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 3456789999999999999777777764 45556677777777763
No 79
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=64.10 E-value=96 Score=26.80 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHhHh
Q 023453 191 VLTVLFPTEEGPTLQVAISLIATMYFIHERLKSK--IRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 191 ~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~--~RA~~l~lg~L~vG~~lGs~ 244 (282)
++.+++.+ ++..+.++.-+++.++++.+...|. ..-+...++++++|++...+
T Consensus 116 ~fa~lfgg-~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~ 170 (193)
T PF06738_consen 116 AFALLFGG-SWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALL 170 (193)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 44444444 5677777766667777776654433 33344455666666554443
No 80
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=62.04 E-value=37 Score=26.76 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhhhhc-ccCCcccccCCccHHHHHHHHHHHHHHHHhhc
Q 023453 219 ERLKSKIRAFLYGAGAFIFSWLLGTFLMVA-VIPPIPIIKGLRSFEVTTSLITYVLLWVSSTY 280 (282)
Q Consensus 219 rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~-~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssf 280 (282)
|+.+|+...+...+..+..|.++-...... +. .++.+|..+...+..+..+++-|+.+-.
T Consensus 12 r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~--~~v~~G~~t~g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 12 RRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMA--TPVFPGSLTLGIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHc--CcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333322111 11 1224356778888888888888886543
No 81
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=61.83 E-value=67 Score=30.56 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhh
Q 023453 104 SEEEIQAARNFLVQKYAGHK-PSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVR 159 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D~-~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad 159 (282)
++++++++.+.+..-+++.+ +..+.|+.=||- .-+.|++|=..+.+++...+
T Consensus 57 p~~~~~~~~k~l~~~f~~~~~~~~~~i~~l~~l----a~~aRk~GlLaLE~~~~~~~ 109 (271)
T PRK06926 57 SPKDLKLAPRVLKQAFQSQEDDVEELVQTFVSL----SEKARREGLLSLEAELEEVK 109 (271)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHHHhcCHHHHHhhhcCCC
Confidence 57899999999988886643 334445555554 45588888665555554443
No 82
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=60.94 E-value=52 Score=27.93 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHh
Q 023453 207 AISLIATMYFIHERLKS---KIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 207 Als~~a~iYfL~rK~kr---~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~s 278 (282)
-|+++..+|-++++-.+ -.---.++++++++|.+..+.+.-..-|.+ |++-...+.+ ..+++|++-
T Consensus 41 lIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPei----GSNFfp~il~--l~L~~Wi~~ 109 (117)
T PF07226_consen 41 LIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEI----GSNFFPSILC--LILVFWIGY 109 (117)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhh----hhhHHHHHHH--HHHHHHHHH
Confidence 34677888888776433 244556889999999999997654455655 3333233322 335678764
No 83
>PRK12482 flagellar motor protein MotA; Provisional
Probab=59.50 E-value=84 Score=30.21 Aligned_cols=55 Identities=2% Similarity=-0.090 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHhCCChhh----HHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhhhh
Q 023453 104 SEEEIQAARNFLVQKYAGHKPS----IDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSR 162 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D~~~----~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~~~ 162 (282)
+.++++++.+.+..-+.+.+.. .+.|+.=||- .-+.|++|=..+.+++...+++|
T Consensus 50 p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~lv~l----s~~aRr~GllaLE~~i~~~~d~p 108 (287)
T PRK12482 50 PKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLLYEL----LEMVQEGGLKRLDQHIEIPEESS 108 (287)
T ss_pred CHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHH----HHHHHhcCHHHHHHhhcCcccCH
Confidence 5789999988888877664432 3555555554 34588888666666665555433
No 84
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=58.59 E-value=7.4 Score=32.34 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHhhccC
Q 023453 225 IRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYLK 282 (282)
Q Consensus 225 ~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssfLr 282 (282)
+.++++++|.+++|.++...|...=...+ .-|.|++-.++ ..++-|+++-++|
T Consensus 4 ~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~--~AGi~sq~~lv---~glvgW~~sYlfR 56 (104)
T PF11460_consen 4 IDVLLIGLGVFLLGGLLYGGLQAAGLDSL--SAGIWSQALLV---LGLVGWVSSYLFR 56 (104)
T ss_pred cceeeecHHHHHHHHHHHHHHHHcCCCch--hhhHHHHHHHH---HHHHHHHhHHHhh
Confidence 45677899999999888887754323333 33556654333 2357898887665
No 85
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=58.14 E-value=20 Score=28.26 Aligned_cols=25 Identities=28% Similarity=0.475 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHH------hhhhhhHHHHHH
Q 023453 206 VAISLIATMYFIH------ERLKSKIRAFLY 230 (282)
Q Consensus 206 LAls~~a~iYfL~------rK~kr~~RA~~l 230 (282)
+++|++.+-+|.. |+.+++.+-+.+
T Consensus 24 l~iGl~fta~Ffiyevts~k~~r~i~kEl~~ 54 (77)
T PF05251_consen 24 LAIGLFFTAWFFIYEVTSTKKTRSIAKELLI 54 (77)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Confidence 4555555555442 455556666555
No 86
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=55.76 E-value=1.1e+02 Score=24.83 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 023453 178 IIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLL 241 (282)
Q Consensus 178 ~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~l 241 (282)
+..+...+.+.+.++.++... -++.++..++...+...-.+|+..+.++.+++.-++=+.+
T Consensus 71 ~~~~~~~~~~~~~~y~~~~~~---lGf~~at~~~~~~~~~~~g~r~~~~~~~~s~~~~~~i~~~ 131 (141)
T PF07331_consen 71 DWKRVLLVLGLLVLYVLLLEY---LGFIIATFLFLFAFMLLLGERRWLRLLLISVVFAAVIYFV 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555432 3455555444444544555666777776666444444333
No 87
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=53.38 E-value=1.6e+02 Score=27.76 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhh
Q 023453 104 SEEEIQAARNFLVQKYAGHK-PSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ 160 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D~-~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~ 160 (282)
+.++++++.+.+..-+++++ +..+-|+.-||- .-+.|++|=....+++...++
T Consensus 49 p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~~l----a~~aRr~GlLaLE~~~~~~~d 102 (254)
T PRK06743 49 RFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDF----SKKSKKHGLLSLEVDGEQVDN 102 (254)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHHHhcCHHHHHhhccCCcc
Confidence 57899999988888775543 344556666665 445888886655555544443
No 88
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=51.42 E-value=1.4e+02 Score=28.43 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhh
Q 023453 104 SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVR 159 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad 159 (282)
+.++++++.+.+..-+.+.+ +..+.|+.-||- .-+.|++|-..+.+.+..++
T Consensus 50 p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l~~l----a~~aR~~GllaLE~~v~~~~ 105 (282)
T TIGR03818 50 PPKVLKETLKGLPKVFKGSKYGKADYLDLLSLLYEL----LRKARREGLMAIESHIENPE 105 (282)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHhcCHHHHHhhhcCcc
Confidence 57889999888888775542 234445544443 34478888665565554444
No 89
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=50.27 E-value=33 Score=27.20 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHhCC
Q 023453 97 LGISREASEEEIQAARNFLVQKYAG 121 (282)
Q Consensus 97 LGVs~~AS~eEI~~A~~rL~~~y~~ 121 (282)
-|..|-|+.|||+.|-..-+++-.|
T Consensus 9 ~~fePpaT~~EI~aAAlQyVRKvSG 33 (78)
T PF10041_consen 9 RNFEPPATDEEIRAAALQYVRKVSG 33 (78)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHcc
Confidence 3677889999999996666666655
No 90
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=48.30 E-value=1.4e+02 Score=27.60 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHh
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs~ 244 (282)
++..|.+++++++..+..++|.+
T Consensus 210 ~~~l~~~~~G~~aa~vsy~iG~l 232 (234)
T cd02433 210 ISALRQLAIGGGAAAVTYLLGLL 232 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666543
No 91
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=46.95 E-value=28 Score=29.15 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHh
Q 023453 212 ATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 212 a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~ 244 (282)
+.+.|+..+ +..+|.=|++|+++++.+++-.
T Consensus 55 G~~~fl~~~--~~~~A~nwavgsF~l~s~~~we 85 (118)
T PF12597_consen 55 GGLRFLFTS--NPRKAANWAVGSFFLGSLGSWE 85 (118)
T ss_pred HhhhhcccC--CCccchhhhhHHHHHHHHHHHH
Confidence 455566655 6788888888888888777653
No 92
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.56 E-value=32 Score=29.15 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 023453 181 KTSVAFLVIGVLTV 194 (282)
Q Consensus 181 ~~~~~f~~L~~~~l 194 (282)
+.+++||+|++++.
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 35666777766644
No 93
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=45.06 E-value=35 Score=26.69 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 023453 262 FEVTTSLITYVLLWVSSTYL 281 (282)
Q Consensus 262 ~e~i~Sl~t~vlLwl~ssfL 281 (282)
-|++.|+.+.++|-+++.||
T Consensus 52 KELlIsl~aSvFlGFG~vFL 71 (79)
T KOG4452|consen 52 KELLISLTASVFLGFGSVFL 71 (79)
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 37777777666666666554
No 94
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=42.60 E-value=59 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhhhhc
Q 023453 219 ERLKSKIRAFLYGAGAFIFSWLLGTFLMVA 248 (282)
Q Consensus 219 rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~ 248 (282)
.|..++.-+=-+=+..|+.|+++|++|...
T Consensus 120 eRm~sLmTs~~~YlllLvgGli~GGLlA~~ 149 (239)
T PF13105_consen 120 ERMTSLMTSHYLYLLLLVGGLILGGLLAML 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677888899999987643
No 95
>PRK09110 flagellar motor protein MotA; Validated
Probab=41.64 E-value=3.2e+02 Score=26.11 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHhCCC----hhhHHHHHHHHHHHHhhHHhhhhCCCCccchhhhhhhh
Q 023453 104 SEEEIQAARNFLVQKYAGH----KPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ 160 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D----~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~ 160 (282)
+.++++++.+.+..-+.+. ++..+.|+.-||- .-+.|++|-....+.+...++
T Consensus 50 p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l----~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 50 PGKAIKATLKALPKLFKGPKYKKADYMDLLALLYEL----LRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHhcCHHHHHhhhcCccc
Confidence 5789999999888887644 2335566666664 334788896666665555543
No 96
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=40.38 E-value=3.8e+02 Score=26.57 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhHhh--hhcccCC--cccccCCccHHHHHHHHHHH
Q 023453 209 SLIATMYFIHERLKS-KIRAFLYGAGAFIFSWLLGTFL--MVAVIPP--IPIIKGLRSFEVTTSLITYV 272 (282)
Q Consensus 209 s~~a~iYfL~rK~kr-~~RA~~l~lg~L~vG~~lGs~L--~~~~ip~--~~~~~~~~s~e~i~Sl~t~v 272 (282)
.+..+.+++.||.++ .+.++..+...+..+....+.. ...+.|. +.+.....+++.+..+....
T Consensus 248 ~~~~l~~~~~~~~~~~~~~af~~~~l~~~~~~~~~g~s~fP~v~p~~~~lTi~~Aass~~tl~~m~i~~ 316 (346)
T COG1294 248 VGALLAVLLKRKGRGKEGLAFVLTSLLFLLAILGLGISLFPYVLPSSVSLTIWDAASSPLTLSVMLVVA 316 (346)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCCcccCCcCceeeecccCCHHHHHHHHHHH
Confidence 344555556666554 4778887776666664444422 2223344 43444555666655554433
No 97
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=39.93 E-value=71 Score=25.98 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=13.6
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHHHhhhh
Q 023453 192 LTVLFPTEEGPTLQVAISLIATMYFIHERLK 222 (282)
Q Consensus 192 ~~l~~~~~~~~~LqLAls~~a~iYfL~rK~k 222 (282)
+.++.....+..+.+.++++..+++..++.+
T Consensus 8 ~~i~~s~SR~~~i~~~~~~~~~~~~~~~~~~ 38 (163)
T PF04932_consen 8 LAIFLSGSRGAWIALLIALILFLLLFYRKRR 38 (163)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555555544444333
No 98
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=39.79 E-value=97 Score=21.84 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHH-------HHHhhh--hhhHHHHHHHHHHHHHHHH
Q 023453 183 SVAFLVIGVLTVLFPTEEGPTLQVAISLIATMY-------FIHERL--KSKIRAFLYGAGAFIFSWL 240 (282)
Q Consensus 183 ~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iY-------fL~rK~--kr~~RA~~l~lg~L~vG~~ 240 (282)
+.++.+++++.+..|......+...+|....+. ..++|. ++..-.+..++..+++|.+
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 456667777777777544333333322222111 112222 3455555566666666654
No 99
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=39.64 E-value=80 Score=31.78 Aligned_cols=13 Identities=0% Similarity=0.350 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 023453 263 EVTTSLITYVLLW 275 (282)
Q Consensus 263 e~i~Sl~t~vlLw 275 (282)
+.+..+.+|++-|
T Consensus 93 ~~~i~~~vFi~~~ 105 (406)
T PF11744_consen 93 PIVIGISVFIIGF 105 (406)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444333
No 100
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=38.94 E-value=1e+02 Score=24.81 Aligned_cols=52 Identities=13% Similarity=0.004 Sum_probs=30.6
Q ss_pred HhhhhhhHHHHHHHH--HHHHHH-HHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHH
Q 023453 218 HERLKSKIRAFLYGA--GAFIFS-WLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLL 274 (282)
Q Consensus 218 ~rK~kr~~RA~~l~l--g~L~vG-~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlL 274 (282)
++++|+|..|++..+ ++-++| ..+||.+-..-+|. ..|+.+.+..-.+.+++
T Consensus 9 ~~~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYniP~-----s~WttsMf~~Q~ami~v 63 (85)
T PF10749_consen 9 TKEGKKFLLALAIVFIIAATVVGRATIGGVIEQYNIPF-----SEWTTSMFILQGAMILV 63 (85)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCh-----hhhhHHHHHHHHHHHHH
Confidence 356788888877544 233334 66777766655552 25776665555544443
No 101
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=38.72 E-value=2.4e+02 Score=25.81 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHh
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs~ 244 (282)
+.-.|-+++++++..++.++|.+
T Consensus 201 ~~~l~~~~~G~~aa~~ty~iG~l 223 (225)
T cd02434 201 ISGIIMLINGAASGGVSFFLGVL 223 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666666666666654
No 102
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.33 E-value=51 Score=38.00 Aligned_cols=9 Identities=11% Similarity=0.685 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 023453 270 TYVLLWVSS 278 (282)
Q Consensus 270 t~vlLwl~s 278 (282)
.++++|+++
T Consensus 166 ILLlllLIG 174 (1355)
T PRK10263 166 ALLCVWAAG 174 (1355)
T ss_pred HHHHHHHHH
Confidence 334444433
No 103
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=38.25 E-value=1.1e+02 Score=23.32 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhHHhhhhCCCCccchhhhhhhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHH
Q 023453 128 AIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTV 194 (282)
Q Consensus 128 ~IEaAYD~Ilm~~L~~R~~Gki~vsk~ir~ad~~~~~~wl~~~~~~Ps~~~i~~~~~~f~~L~~~~l 194 (282)
.-++-|+.++......+..-..+ ..+++..|++-.+ ..-..|....++-.++++|++.+..+
T Consensus 15 ~~~~~Y~~Ll~r~~e~~~~~~~~-~~~~~ivd~A~~P----~~P~~P~~~lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 15 IKRELYETLLQRYEEARLSKASN-VSNVRIVDPAIVP----DKPVSPKRALILALGLFLGLILGIGL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCceeccccccC----CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34566777655444444322222 2245555543221 12244666666666666666555444
No 104
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=38.23 E-value=1.4e+02 Score=31.13 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHhhhhc
Q 023453 230 YGAGAFIFSWLLGTFLMVA 248 (282)
Q Consensus 230 l~lg~L~vG~~lGs~L~~~ 248 (282)
.++.+.+.|++.|++....
T Consensus 399 ~gi~sii~G~lyG~fFG~~ 417 (646)
T PRK05771 399 LGISTIIWGLLTGSFFGFS 417 (646)
T ss_pred HHHHHHHHHHHHHhHhcCc
Confidence 4888999999999987543
No 105
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=37.74 E-value=1.8e+02 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhh
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
++++.++.=.+.++++|+++...|.
T Consensus 78 ~~~~~~~~R~~lAvliaivIs~pl~ 102 (301)
T PF14362_consen 78 KRLLQALPRLLLAVLIAIVISEPLE 102 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777888877777653
No 106
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=37.26 E-value=2e+02 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhcccCCc
Q 023453 224 KIRAFLYGAGAFIFSWLLGTFLMVAVIPPI 253 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~ 253 (282)
........+-.+.+|.+.++|.....+|.+
T Consensus 63 ~~~~~~~i~il~~~G~~~~~~~~~g~i~~l 92 (454)
T TIGR00931 63 IKIGIKAILILALVGILIGTWIMGGTVPTL 92 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 344444555667778888888777667765
No 107
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=35.92 E-value=2.3e+02 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhH
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGT 243 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs 243 (282)
++..|-+++++++..+..+++.
T Consensus 218 ~s~lrml~~G~~aa~vty~l~~ 239 (241)
T cd02435 218 WGAVQMLVVGGLAAGAAWGLVK 239 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555554443
No 108
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=35.43 E-value=1.5e+02 Score=26.77 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHH-HHHhhhhhhHHHHHHHHHHHHHH-HHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHH
Q 023453 212 ATMY-FIHERLKSKIRAFLYGAGAFIFS-WLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWV 276 (282)
Q Consensus 212 a~iY-fL~rK~kr~~RA~~l~lg~L~vG-~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl 276 (282)
+.+| .+.+|.|..+-.+++|+.-..+= .++ +++.|.++ ...-++-+.++|.++..+||=
T Consensus 85 AllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~l-----nP~fp~~~-~~~~l~~nTiiT~~CiyiLyG 145 (173)
T PF11085_consen 85 ALLYYALLKKFKGPWPGILYGLAWWAIVFFVL-----NPIFPMIK-PVTELDWNTIITTLCIYILYG 145 (173)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-----cccccCCh-hhhhCchhHHHHHHHHHHHHH
Confidence 4444 77899999998888876543221 222 33333332 113456789999999888884
No 109
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=35.39 E-value=57 Score=30.29 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=42.8
Q ss_pred CCCCCCCCCCChhhhhCCCCCCCHHHHHH--HHHHHHHHhCCC----------h-hhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 82 TAIFPRINVRDPYKRLGISREASEEEIQA--ARNFLVQKYAGH----------K-PSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 82 ~~~fpr~~~~dPYe~LGVs~~AS~eEI~~--A~~rL~~~y~~D----------~-~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
.-+||+-...--=-.=||..|+|.||++. |-..+...+-|= + ...+.=-.||..+-++|...|..|.
T Consensus 121 LvlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 121 LVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred eeeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 34677644322222358999999999998 654332111111 1 1233455899999999999999984
Q ss_pred C
Q 023453 149 I 149 (282)
Q Consensus 149 i 149 (282)
-
T Consensus 201 r 201 (212)
T PTZ00352 201 K 201 (212)
T ss_pred H
Confidence 3
No 110
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.85 E-value=53 Score=25.65 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 023453 224 KIRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
++=|+++.+.+|++|.+.|.|+.
T Consensus 3 l~lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999998874
No 111
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=34.63 E-value=3e+02 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023453 204 LQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL 245 (282)
Q Consensus 204 LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L 245 (282)
+.+++.+++.+.+++++.|++.|-.. .+.++++|++++.++
T Consensus 165 ~~vg~~~l~~~vl~~~~~~g~~~~~a-iLigiv~g~i~a~~l 205 (415)
T TIGR00801 165 LGVAFVVLALIILLNRFGKGFLKSIS-ILIGILVGYILALFM 205 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHc
Confidence 55777677777788888888876554 445556666666543
No 112
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=34.58 E-value=87 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhhh
Q 023453 219 ERLKSKIRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 219 rK~kr~~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
+|.|+++|.+.+-+.+.++|.++|.+..
T Consensus 3 ~~k~~~~~~~~~illg~~iGg~~G~~~~ 30 (248)
T PF11368_consen 3 KKKKRILRFLLLILLGGLIGGFIGFFIG 30 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445699999998888888988888653
No 113
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=34.36 E-value=1.6e+02 Score=23.49 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=35.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhHhhh-hcccCCcccccCCccHHHHHHHHHHHHHHHHhhcc
Q 023453 218 HERLKSKIRAFLYGAGAFIFSWLLGTFLM-VAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTYL 281 (282)
Q Consensus 218 ~rK~kr~~RA~~l~lg~L~vG~~lGs~L~-~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssfL 281 (282)
.++.++...++++.++++++.++..+.+. .+-+|.++ ..+.-+=-....|++..||
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~--------~llElvGlgyt~wF~~ryL 68 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLP--------GLLELVGLGYTGWFVYRYL 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchH--------HHHHHHHHHHHhHHHHHHH
Confidence 46778888999998888888888888763 23455441 1222222235567766654
No 114
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=34.35 E-value=55 Score=32.86 Aligned_cols=39 Identities=41% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 102 ~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
--|.+||++|++.+ |++..+.|+.||+.| +++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999998766 778899999999998 5566666655
No 115
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.10 E-value=75 Score=26.13 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHh
Q 023453 224 KIRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~ 244 (282)
++-...|++..+++|.++|.+
T Consensus 70 ~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 70 YPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred cCCCcHHHHHHHHHHHHHHHH
Confidence 333457788888888888875
No 116
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=33.83 E-value=65 Score=28.52 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=55.4
Q ss_pred ccccccCCcccceeccC-CCCCCCCCCCCCCC--CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 023453 57 GCKKQRTYSIKCAMDAS-YGDMSDGSTAIFPR--INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAH 133 (282)
Q Consensus 57 ~~~~~~~~~~~~a~~as-~G~~~~~~~~~fpr--~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAY 133 (282)
.|.|-..+-+|++.-|= +|| ..+.=.+ ...++=|+.|||+.++.-+.|+.-++.-.+.+.++.+..++++..+
T Consensus 80 aC~RD~~~~LR~itYailaGd----~~~L~~~~L~GlrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yF 155 (167)
T TIGR01337 80 ACLRDIDYYLRYATYAIIAGD----NSILEERVLNGLKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPF 155 (167)
T ss_pred HHHHHHHHHhhhhheeeecCC----chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHH
Confidence 47776667777776542 333 1222222 2345789999999999999999888888787777766778899999
Q ss_pred HHHHh
Q 023453 134 DKIIM 138 (282)
Q Consensus 134 D~Ilm 138 (282)
|.++.
T Consensus 156 d~li~ 160 (167)
T TIGR01337 156 DYMCS 160 (167)
T ss_pred HHHHH
Confidence 98764
No 117
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=33.65 E-value=2.5e+02 Score=25.20 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHH
Q 023453 208 ISLIATMYFIHERLKSK----IRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLIT 270 (282)
Q Consensus 208 ls~~a~iYfL~rK~kr~----~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t 270 (282)
++.++++.+|.+|.+++ -++..+|+..+.+|++.|++=.-..=..- =.|.|-+..+++.
T Consensus 29 ~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak~~WG~~----W~WDpr~t~~lIl 91 (184)
T TIGR01191 29 MMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGKPMWGTW----WVWDARLTSVLIL 91 (184)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCChHHHHHHHH
Confidence 33455555565555443 34455778888888888884332211111 1345666665554
No 118
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=33.17 E-value=5.4e+02 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.248 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHhhhhcccCCc
Q 023453 232 AGAFIFSWLLGTFLMVAVIPPI 253 (282)
Q Consensus 232 lg~L~vG~~lGs~L~~~~ip~~ 253 (282)
+.+.++|.++|.+....+.|.+
T Consensus 393 ~~G~l~~~~~a~~~~~~vlP~~ 414 (650)
T PF04632_consen 393 LIGALLGAVLAFLYLFFVLPHL 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 3344446666665544455544
No 119
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=33.02 E-value=82 Score=32.10 Aligned_cols=38 Identities=37% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 103 AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
.|.+||.+|++++ |++..+.|+.|++.| +.+.++|+.+
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p~ 98 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLPK 98 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCCC
Confidence 6889999998866 677888999999988 6677777763
No 120
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=32.76 E-value=2.4e+02 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.049 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHH
Q 023453 224 KIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLIT 270 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t 270 (282)
..|+..+|+..+.+|++.|++-....-... =.|.|-.+.|+++
T Consensus 151 ~~~~~~~Gf~~ltl~li~G~iWa~~~wg~~----w~wDpK~~~sli~ 193 (243)
T TIGR03144 151 SYRTIAIGFPLLTIGIISGAVWANEAWGSY----WSWDPKETWALIT 193 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCHHHHHHHHH
Confidence 346778899999999999995443221111 1457777666665
No 121
>PRK08124 flagellar motor protein MotA; Validated
Probab=31.91 E-value=3.5e+02 Score=25.36 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHhC
Q 023453 104 SEEEIQAARNFLVQKYA 120 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~ 120 (282)
+.++++++.+.+..-+.
T Consensus 52 ~~~~~~~~~k~~~~~f~ 68 (263)
T PRK08124 52 PMSELKKVPKLFKVLFK 68 (263)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 45677777777777663
No 122
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=31.74 E-value=3.2e+02 Score=24.74 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCChHHHHH--HHHH-HHHHHHhhhhh
Q 023453 174 PSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAI--SLIA-TMYFIHERLKS 223 (282)
Q Consensus 174 Ps~~~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAl--s~~a-~iYfL~rK~kr 223 (282)
|+-..+++...+|..+...+-=.+ =...+|+++ ++.. ..|.+.|+.+.
T Consensus 79 ~~w~~v~R~i~~FvGi~~airkl~--w~s~~Q~s~~lalln~~LW~lfDrT~s 129 (193)
T PF07281_consen 79 PDWSSVLRSIGAFVGISFAIRKLP--WSSSLQASITLALLNPGLWWLFDRTRS 129 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHhCCchh
Confidence 455577777776654333222111 235677444 4443 67788888765
No 123
>PLN02776 prenyltransferase
Probab=31.62 E-value=2.9e+02 Score=27.26 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHH
Q 023453 261 SFEVTTSLITYVLLWVS 277 (282)
Q Consensus 261 s~e~i~Sl~t~vlLwl~ 277 (282)
+++.+ -++..+++|-.
T Consensus 150 ~~~~~-~Lf~~~~~Wq~ 165 (341)
T PLN02776 150 DAGAM-VLAAALYFWQM 165 (341)
T ss_pred CHHHH-HHHHHHHHHHH
Confidence 45554 47778888875
No 124
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=66 Score=31.36 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=10.7
Q ss_pred CccHHHHHHHHHHHHHHH
Q 023453 259 LRSFEVTTSLITYVLLWV 276 (282)
Q Consensus 259 ~~s~e~i~Sl~t~vlLwl 276 (282)
..+.+.+. ++..+++|-
T Consensus 172 ~~~~~a~~-Lf~IiF~Wt 188 (304)
T COG0109 172 SISLGAIL-LFAIIFLWT 188 (304)
T ss_pred CCCchHHH-HHHHHHHhc
Confidence 33555555 777788874
No 125
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=30.43 E-value=4e+02 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhH
Q 023453 221 LKSKIRAFLYGAGAFIFSWLLGT 243 (282)
Q Consensus 221 ~kr~~RA~~l~lg~L~vG~~lGs 243 (282)
.+...|.+++++++.+++.++|.
T Consensus 190 ~~~~l~~~~~G~~aa~~~~~iG~ 212 (213)
T PF01988_consen 190 WRSGLEMLLIGLIAAAVTYLIGY 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566777777777777777764
No 126
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=30.09 E-value=2e+02 Score=25.35 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHH
Q 023453 203 TLQVAISLIATMYFIHERLKS---KIRAFLYGAGAFIFS 238 (282)
Q Consensus 203 ~LqLAls~~a~iYfL~rK~kr---~~RA~~l~lg~L~vG 238 (282)
++.+.++++..+|++..+..- .+-.++.++++|.+|
T Consensus 72 P~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~g 110 (153)
T PF11947_consen 72 PTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLG 110 (153)
T ss_pred HHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHH
Confidence 455777888999999877522 233333344444444
No 127
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=29.70 E-value=76 Score=31.99 Aligned_cols=38 Identities=37% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 103 AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
-|.+||++||+++ |++..+.|+.|++.| +++.++|+.+
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I--~~fh~~q~~~ 70 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENI--RAFHEAQLPR 70 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 4789999998764 777889999999998 4566666654
No 128
>COG0730 Predicted permeases [General function prediction only]
Probab=29.33 E-value=3.2e+02 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhh
Q 023453 224 KIRAFLYGAGAFIFSWLLGTFLMV 247 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~L~~ 247 (282)
.+|...+-..+-++|..+|+++..
T Consensus 72 ~~~~~~~l~~~~~~G~~lG~~l~~ 95 (258)
T COG0730 72 DWKLALILLLGALIGAFLGALLAL 95 (258)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544445889999987643
No 129
>PRK11677 hypothetical protein; Provisional
Probab=29.12 E-value=50 Score=28.43 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhHhhhhc
Q 023453 229 LYGAGAFIFSWLLGTFLMVA 248 (282)
Q Consensus 229 ~l~lg~L~vG~~lGs~L~~~ 248 (282)
.+++.+|++|.++|.+++-.
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999987543
No 130
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=28.87 E-value=73 Score=32.28 Aligned_cols=38 Identities=42% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCC
Q 023453 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNP 147 (282)
Q Consensus 102 ~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~G 147 (282)
.-|.+||++||+++ |++..+.|+.|+|.| .++.++|+.
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~~ 86 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQLP 86 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT--
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 44789999999988 677899999999998 456666664
No 131
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=28.74 E-value=2.4e+02 Score=30.45 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcccCCc
Q 023453 174 PSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPI 253 (282)
Q Consensus 174 Ps~~~i~~~~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~ 253 (282)
|+..+...+..+-+.|.+++.+ .-+-|..-++ .+.+|++.+.+..--|+-++ +.++|.++|..+.+.++|..
T Consensus 27 P~r~~~~~r~~~a~~L~l~i~~--~l~~P~~a~a---~~~vfivsqp~~g~t~~kai---~r~vgt~lg~~~~vll~~~~ 98 (683)
T PRK11427 27 PGRVPQTLQLWVGCLLVILISM--TFEIPFLALS---LAVLFYGIQSNAFYTKFVAI---LFVVATVLEIGSLFLIYKWS 98 (683)
T ss_pred CChHHHHHHHHHHHHHHHHHHH--HcCCCHHHHH---HHHHHheeccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 6666665554433333333332 2244555566 36778887766544444333 23444455554444455544
Q ss_pred ccccCCccHHHHHH
Q 023453 254 PIIKGLRSFEVTTS 267 (282)
Q Consensus 254 ~~~~~~~s~e~i~S 267 (282)
..+|+..+.
T Consensus 99 -----v~~P~l~~l 107 (683)
T PRK11427 99 -----YGYPLIRLI 107 (683)
T ss_pred -----ccchHHHHH
Confidence 235555543
No 132
>COG1289 Predicted membrane protein [Function unknown]
Probab=28.42 E-value=2.8e+02 Score=29.17 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023453 189 IGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL 245 (282)
Q Consensus 189 L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L 245 (282)
+.+|.-+.-..+-+...++++.+++-=.+-....+..+-++.++.+++++++++..+
T Consensus 23 la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~ 79 (674)
T COG1289 23 LALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALL 79 (674)
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333334455555555554443344455666666667777777777766654
No 133
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.21 E-value=1.2e+02 Score=26.18 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHH
Q 023453 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDK 135 (282)
Q Consensus 88 ~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~----~~~~~IEaAYD~ 135 (282)
|..+..-.+|+|++.-+.|||.+-|++|-+-+...+ --..+|=.|.|.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkEr 107 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKER 107 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHH
Confidence 667889999999999999999999999997642221 123456666655
No 134
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.64 E-value=2.1e+02 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhh
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
-+.+.|.++++|.|++||+++-.|.
T Consensus 117 ls~~~Ai~isl~~l~~gWlvYd~lC 141 (300)
T PF06181_consen 117 LSPWQAIAISLGSLVLGWLVYDGLC 141 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777664
No 135
>PF14256 YwiC: YwiC-like protein
Probab=27.56 E-value=3.7e+02 Score=22.59 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=27.0
Q ss_pred hhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHH----HHHHHHHHHHhhh
Q 023453 162 RVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVLFPTE-EGPTLQVAI----SLIATMYFIHERL 221 (282)
Q Consensus 162 ~~~~wl~~~~~~Ps~~~i~~~~~~f~~L~~~~l~~~~~-~~~~LqLAl----s~~a~iYfL~rK~ 221 (282)
|...|+.++- +.+..-.+...+|+++++...+..-- +...+..++ -++.++|+-.||.
T Consensus 43 p~~~~~k~r~--~~~~~~~~~~~~Yg~~a~~~~l~~l~~~p~ll~~~~~~~pl~~v~~~~~~~~~ 105 (129)
T PF14256_consen 43 PFLLWLKQRR--RRRPRYLKWALIYGAIALVFGLPALLYAPRLLWWALLFLPLFAVNLYFAKRKR 105 (129)
T ss_pred HHHHHHhccc--ccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344554332 12445566677777666554443211 212333222 3445666655544
No 136
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=27.22 E-value=87 Score=31.86 Aligned_cols=39 Identities=38% Similarity=0.509 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 102 ~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
.-|.+||++||+++ |++..+.|+.||+.| +++.++|..+
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~~ 102 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKPE 102 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 35789999998764 777889999999998 5566666654
No 137
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=26.86 E-value=92 Score=31.73 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCC
Q 023453 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (282)
Q Consensus 102 ~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gk 148 (282)
.-|.+||++||+++ |++..+.|+.|++.| +++.++|..+
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~ 95 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQV--RRFAEAQRDS 95 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHH--HHHHHHhcCC
Confidence 35789999998764 777889999999998 4555665543
No 138
>PRK13770 histidinol dehydrogenase; Provisional
Probab=26.74 E-value=92 Score=31.63 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCC
Q 023453 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNP 147 (282)
Q Consensus 103 AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~G 147 (282)
-|.+||++||+++ |++..+.|+.|++.| +++.++|..
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~ 93 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERI--KAYQESIKQ 93 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCC
Confidence 4789999998875 677889999999998 445555554
No 139
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=26.09 E-value=2.4e+02 Score=26.83 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHhhhhC----CCCccc-hhhhhhh-hhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHh
Q 023453 130 ESAHDKIIMQKFYERRN----PKIDIK-KKVREVR-QSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVL 195 (282)
Q Consensus 130 EaAYD~Ilm~~L~~R~~----Gki~vs-k~ir~ad-~~~~~~wl~~~~~~Ps~~~i~~~~~~f~~L~~~~l~ 195 (282)
+--||.++....++||- ..-+.. +.+-|-. -.||..|+. +|.-|..+.+-=++++.|+++++.+=
T Consensus 111 ~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~-rf~l~~aE~lNGR~AMiGFvaal~~E 181 (250)
T PLN00014 111 KTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVK-RFHLPEAELLNGRAAMVGFFMAYLVD 181 (250)
T ss_pred CcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHH-hccCchhHhhhhHHHHHHHHHHHHHH
Confidence 34577777777777742 111111 1111110 127777775 88888877776677777776665553
No 140
>PRK01844 hypothetical protein; Provisional
Probab=26.09 E-value=91 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 023453 224 KIRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 224 ~~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
.+-+.++.+.+|++|.++|.++.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999998764
No 141
>PRK00523 hypothetical protein; Provisional
Probab=25.97 E-value=92 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 023453 225 IRAFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 225 ~RA~~l~lg~L~vG~~lGs~L~ 246 (282)
+-++++++.+|++|.++|.++.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888999999888764
No 142
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=25.86 E-value=1.1e+02 Score=27.38 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=55.1
Q ss_pred ccccccCCcccceeccCC-CCCCCCCCCCCCC--CCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHH
Q 023453 57 GCKKQRTYSIKCAMDASY-GDMSDGSTAIFPR--INVRDPYKRLGISREASEEEIQAARNFLVQKYAG-HKPSIDAIESA 132 (282)
Q Consensus 57 ~~~~~~~~~~~~a~~as~-G~~~~~~~~~fpr--~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~-D~~~~~~IEaA 132 (282)
.|.|-..+-+|++.-|=. ||. .+.=.+ ...++=|+.|||+.++--+.|+.-++.-++.+.+ |.+..+.|+.-
T Consensus 81 aC~RD~~~~LR~itYalvaGd~----~~L~e~~L~GlrE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~y 156 (169)
T CHL00089 81 ACLRDIEYYLRYASYAIVAGDT----NILDERVLDGLKDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEP 156 (169)
T ss_pred HHHHHHHhhhhheeeeeecCCc----hHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 477777777888775533 331 111111 1345789999999999999999988888888774 44567889999
Q ss_pred HHHHHh
Q 023453 133 HDKIIM 138 (282)
Q Consensus 133 YD~Ilm 138 (282)
+|.++.
T Consensus 157 Fd~l~~ 162 (169)
T CHL00089 157 FQYMIK 162 (169)
T ss_pred HHHHHH
Confidence 998654
No 143
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.79 E-value=1.1e+02 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHH
Q 023453 103 ASEEEIQAARNFLVQKYAGH---KPSIDAIESAHDKII 137 (282)
Q Consensus 103 AS~eEI~~A~~rL~~~y~~D---~~~~~~IEaAYD~Il 137 (282)
+.+||+|.+|+.+..+-..= +.+..++|++||.++
T Consensus 56 ~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 56 AEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 67899999999998874433 346888999999964
No 144
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=24.95 E-value=5.2e+02 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.4
Q ss_pred CCccHHHHHHHHHHHHHHHHhh
Q 023453 258 GLRSFEVTTSLITYVLLWVSST 279 (282)
Q Consensus 258 ~~~s~e~i~Sl~t~vlLwl~ss 279 (282)
..+.+|...|+...+++|+.=.
T Consensus 147 a~~~~E~~~Si~ii~~~~liRi 168 (189)
T PF08552_consen 147 ASWQPESFFSIAIIVVLWLIRI 168 (189)
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 4677899999999999998643
No 145
>PRK10621 hypothetical protein; Provisional
Probab=24.88 E-value=4.2e+02 Score=24.23 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 023453 225 IRAFLYGAGAFIFSWLLGTFLMV 247 (282)
Q Consensus 225 ~RA~~l~lg~L~vG~~lGs~L~~ 247 (282)
+|....-..+.++|..+|+++..
T Consensus 77 ~~~~~~l~~~~l~Ga~~G~~l~~ 99 (266)
T PRK10621 77 LADQKLNIAMTFVGSMSGALLVQ 99 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788888887744
No 146
>COG4125 Predicted membrane protein [Function unknown]
Probab=24.69 E-value=4.9e+02 Score=22.99 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHHHH-H----h----hh-------hhhHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHH
Q 023453 200 EGPTLQVAISLIATMYFI-H----E----RL-------KSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFE 263 (282)
Q Consensus 200 ~~~~LqLAls~~a~iYfL-~----r----K~-------kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e 263 (282)
+.-++-+-+++.+.+|-+ + + +. .|..-|++.=+|.++++.=+..|-++. .=.|
T Consensus 41 ~mG~l~i~~atvAm~WN~vyN~lFd~~~rr~~~~rT~~vRv~HAv~FE~gliv~lvP~iAw~L~i-----------sL~e 109 (149)
T COG4125 41 HMGALTILSATVAMIWNFVYNLLFDRAERRMGTRRTLAVRVAHAVGFELGLIVILVPLIAWWLGI-----------SLLE 109 (149)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHhhHHHHHHHHH-----------HHHH
Confidence 333444555777877733 1 1 11 345567777778888877777764332 1137
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 023453 264 VTTSLITYVLLWVSSTYL 281 (282)
Q Consensus 264 ~i~Sl~t~vlLwl~ssfL 281 (282)
.++--.+++++++.-+|+
T Consensus 110 Al~Ldig~~lffl~Ytf~ 127 (149)
T COG4125 110 ALVLDIGLILFFLPYTFL 127 (149)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776653
No 147
>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN). PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=24.42 E-value=60 Score=24.48 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhHHhhhhCCCCccchh
Q 023453 107 EIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKK 154 (282)
Q Consensus 107 EI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ 154 (282)
+|-..-...+++. +|+..++.+++.++.++-+.++.|-.-+|.|++.
T Consensus 3 ~v~~~i~~fl~s~-~~~l~le~cngf~RkLiyq~l~~~~~~~I~ve~~ 49 (65)
T cd02637 3 EVIERIEAFLESE-EDDLELEPCNGFQRKLIYQTLEQKYPKGIHVETL 49 (65)
T ss_pred hHHHHHHHHHhcC-cccccccccccHHHHHHHHHHHHHccccceeeee
Confidence 3444445555553 7788899999999999999999997777877654
No 148
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=24.27 E-value=68 Score=32.66 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=27.0
Q ss_pred hhhhCCCCCCCHHHHHHHHHHHHHHhCCChh
Q 023453 94 YKRLGISREASEEEIQAARNFLVQKYAGHKP 124 (282)
Q Consensus 94 Ye~LGVs~~AS~eEI~~A~~rL~~~y~~D~~ 124 (282)
++-.+++.--+-+.||+||+|-+.--|||+.
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccc
Confidence 4556788889999999999999999999974
No 149
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.16 E-value=51 Score=27.65 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHhhhhc
Q 023453 231 GAGAFIFSWLLGTFLMVA 248 (282)
Q Consensus 231 ~lg~L~vG~~lGs~L~~~ 248 (282)
++.+|++|+++|.++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567888888888876543
No 150
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=23.95 E-value=3.7e+02 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHHH--HHHhhhhh-hHHHHHHHHHHHHHHHHHhHhhhh
Q 023453 206 VAISLIATMY--FIHERLKS-KIRAFLYGAGAFIFSWLLGTFLMV 247 (282)
Q Consensus 206 LAls~~a~iY--fL~rK~kr-~~RA~~l~lg~L~vG~~lGs~L~~ 247 (282)
+.+.++.+++ +.++|.++ -+|-+..-..+-++|.++|+++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG~~l~~ 85 (240)
T PF01925_consen 41 LFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIGAWLLS 85 (240)
T ss_pred HHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHHHhhhc
Confidence 3334444444 33444332 345555555666777788887644
No 151
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.88 E-value=1.7e+02 Score=23.68 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=29.8
Q ss_pred hhhhhhHHHHHHHHHHHH-HHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHh
Q 023453 219 ERLKSKIRAFLYGAGAFI-FSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 219 rK~kr~~RA~~l~lg~L~-vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~s 278 (282)
||.-.+.--.+.++|.++ +|.+..+++. -+|.+- +|...+--.+.++|.=.++|++.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~--~~~~L~-Lp~~~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILS--QIPQLG-LPQFLAHGALFSIFIGALLWLVG 60 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHH--hcccCC-CcHHHHhhHHHHHHHHHHHHHhc
Confidence 444444445555555443 2333334432 344441 23344556777888888888863
No 152
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.79 E-value=80 Score=24.62 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHh
Q 023453 222 KSKIRAFLYGAGAFIFSWLLGTF 244 (282)
Q Consensus 222 kr~~RA~~l~lg~L~vG~~lGs~ 244 (282)
.+++.|+++++| +|+++|-+
T Consensus 71 e~P~~svgiAag---vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG---VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH---HHHHHHHH
Confidence 346667666554 45555544
No 153
>PRK08456 flagellar motor protein MotA; Validated
Probab=23.79 E-value=6e+02 Score=23.69 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHhCCChh-hHHHHHHHHHHHHhhHHhhhhCCCCccchh
Q 023453 104 SEEEIQAARNFLVQKYAGHKP-SIDAIESAHDKIIMQKFYERRNPKIDIKKK 154 (282)
Q Consensus 104 S~eEI~~A~~rL~~~y~~D~~-~~~~IEaAYD~Ilm~~L~~R~~Gki~vsk~ 154 (282)
+.++++++.+.+..-+++.+. ..+-++.-||... +.|++|-..+.++
T Consensus 52 ~~~~~~~~~~~~~~~f~~~~~~~~~li~~l~~l~~----~~r~~g~laLe~~ 99 (257)
T PRK08456 52 HKKYVKAAYKELKIVFKNPGVNLNERIKQLVELAT----LARKDGVLALEGR 99 (257)
T ss_pred CHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----HhhhhhHHHHhhc
Confidence 567788887777766644322 2233444444432 3555554443333
No 154
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=23.67 E-value=3.1e+02 Score=26.72 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 023453 183 SVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIF 237 (282)
Q Consensus 183 ~~~f~~L~~~~l~~~~~~~~~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~v 237 (282)
+...++.|+.....-...-|-..+++++...+|++.||.-+..-..++++=++.+
T Consensus 131 AV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~a~~g~~lE~l~l 185 (293)
T COG2962 131 AVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLL 185 (293)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCchHHhHHHHHHHH
Confidence 4444555555554444344666688889999999999987776666665544433
No 155
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=23.13 E-value=4.4e+02 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhh
Q 023453 223 SKIRAFLYGAGAFIFSWLLGTFL 245 (282)
Q Consensus 223 r~~RA~~l~lg~L~vG~~lGs~L 245 (282)
++++|+..++...++|.++.+..
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~ 84 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVF 84 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999988888877743
No 156
>COG5395 Predicted membrane protein [Function unknown]
Probab=22.79 E-value=2.2e+02 Score=24.38 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHh
Q 023453 211 IATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 211 ~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~s 278 (282)
.+.+.+++.|+-++-|+++++-.++-+...+-++. |-.+- ..+..||-.+.|+++++.+|=+.
T Consensus 26 lGav~~mR~KGt~lHr~LGrvWv~lM~atavSs~F----I~ei~-l~g~FSpIHLLSi~~i~g~~~aV 88 (131)
T COG5395 26 LGAVLMMRVKGTTLHRLLGRVWVALMGATAVSSLF----IHEIN-LHGGFSPIHLLSIFTIIGLPRAV 88 (131)
T ss_pred HhheeeeeccccHHHHHHHHHHHHHHHHHhhhhhe----eeeee-eccCcChHHHHHHHHHHhhHHHH
Confidence 45566889999999999999988887776666653 22221 22566899999999999888654
No 157
>PRK10692 hypothetical protein; Provisional
Probab=22.70 E-value=1.8e+02 Score=23.77 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHHHH-HHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHh
Q 023453 219 ERLKSKIRAFLYGAGAFI-FSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 219 rK~kr~~RA~~l~lg~L~-vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~s 278 (282)
||.-.+.--++.++|.++ +|.+..+++. -+|.+- +|...+--.+.++|.=.++|++.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~--~i~~L~-Lp~~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILN--QLPQLN-LPQFFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHH--hcccCC-chHHHHhhHHHHHHHHHHHHHhc
Confidence 444444445555555443 2333334432 344441 22333445667777777888753
No 158
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=22.66 E-value=3.4e+02 Score=23.79 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHH
Q 023453 223 SKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLIT 270 (282)
Q Consensus 223 r~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t 270 (282)
-..|...+++..+.+|++.|++-....-... -.|.|-++.|+++
T Consensus 124 ~~~~~~~~gf~~lti~l~~G~~wa~~~wG~~----w~wDpk~~~sli~ 167 (214)
T PF01578_consen 124 LSYRLILIGFILLTIGLITGAIWAKDSWGSY----WSWDPKEVWSLIT 167 (214)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHhccch----hHHhHHHHHHHHH
Confidence 3567788999999999999986433221211 1344766666654
No 159
>COG4818 Predicted membrane protein [Function unknown]
Probab=22.28 E-value=1.7e+02 Score=24.39 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhhhHHHHH----HHHHHHHHHHHHhHhhhhcccCCcccccCCccHHHHHHHHHHHHHHHHhhc
Q 023453 212 ATMYFIHERLKSKIRAFL----YGAGAFIFSWLLGTFLMVAVIPPIPIIKGLRSFEVTTSLITYVLLWVSSTY 280 (282)
Q Consensus 212 a~iYfL~rK~kr~~RA~~----l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~s~e~i~Sl~t~vlLwl~ssf 280 (282)
+.++++.+|+.+|.|==+ ++|+++.+=.+ ....+|.+ -|-..-++.+ +.++||+.|-|
T Consensus 18 GllFlllEre~~FVrFHAmQS~ltF~~l~~l~i-----ll~~iP~I-----g~lls~~v~l-~a~iLwlv~my 79 (105)
T COG4818 18 GLLFLLLERESKFVRFHAMQSFLTFLGLWLLII-----LLAFIPYI-----GWLLSGLVGL-AAFILWLVCMY 79 (105)
T ss_pred HHHHHHhhccCcceeehhHHHHHHHHHHHHHHH-----HHHHhhhh-----HHHHHhHHHH-HHHHHHHHHHH
Confidence 445566777777655322 23333222111 12345543 1233334443 45789998864
No 160
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=22.24 E-value=1.1e+02 Score=23.98 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=29.8
Q ss_pred CCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q 023453 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQ 139 (282)
Q Consensus 90 ~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~~~~~IEaAYD~Ilm~ 139 (282)
.+|||..++-=++.+|+.+-+.-.+ .+-+...-.+|.++-..++.+
T Consensus 41 ~~nPY~L~~~i~gi~F~~aD~iA~~----~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 41 KENPYRLIEDIDGIGFKTADKIALK----LGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HH-STCCCB-SSSSBHHHHHHHHHT----TT--TT-HHHHHHHHHHHHHH
T ss_pred HHChHHHHHHccCCCHHHHHHHHHH----cCCCCCCHHHHHHHHHHHHHH
Confidence 4699999995589999888665443 344455566777777777766
No 161
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=22.22 E-value=61 Score=17.39 Aligned_cols=11 Identities=9% Similarity=0.477 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 023453 126 IDAIESAHDKI 136 (282)
Q Consensus 126 ~~~IEaAYD~I 136 (282)
.++|+.||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45666777653
No 162
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=22.12 E-value=2.1e+02 Score=27.19 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcccCCcccccCCc-cHHHHHHHHHHHHHHH
Q 023453 212 ATMYFI-HERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPIPIIKGLR-SFEVTTSLITYVLLWV 276 (282)
Q Consensus 212 a~iYfL-~rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~~-s~e~i~Sl~t~vlLwl 276 (282)
.++|+. -++.++..+.+..|-..-.++|.+|+.+...++..+. ++. +=..+-+++ .+++|+
T Consensus 205 ~~ly~~lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv~~~~---~y~~~YGalgsvi-~lmlw~ 267 (303)
T COG1295 205 FLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLSNFA---NYSSTYGALGSVI-ILLLWL 267 (303)
T ss_pred HHHHHHcCCccccchHHhhhhHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHH-HHHHHH
Confidence 344433 3343556666777666667777777766555554441 111 224455543 355665
No 163
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.88 E-value=5.1e+02 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhCCChh
Q 023453 105 EEEIQAARNFLVQKYAGHKP 124 (282)
Q Consensus 105 ~eEI~~A~~rL~~~y~~D~~ 124 (282)
.||.++|.+|-.+=|+-++.
T Consensus 47 ~e~~~~al~rh~~fFNT~p~ 66 (264)
T PF03613_consen 47 KEELKEALKRHMEFFNTEPF 66 (264)
T ss_pred HHHHHHHHHHHHHHHCCCCh
Confidence 78899998888877766654
No 164
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=1.1e+02 Score=24.99 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.2
Q ss_pred ChhhhhCCCCCCCHHHHHHHHHHHHHHhCCChh------------------------hHHHHHHHHHHH
Q 023453 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHKP------------------------SIDAIESAHDKI 136 (282)
Q Consensus 92 dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D~~------------------------~~~~IEaAYD~I 136 (282)
=||++.|....+=.|+|- +++++|.||.. .++++|++|..+
T Consensus 16 F~~KVmG~a~~~l~~~vv----~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 16 FTYKVMGAAGPELEDQVV----EVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred ceeeehcccchhHHHHHH----HHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 489999988766555554 56777777642 388999999875
No 165
>PRK10720 uracil transporter; Provisional
Probab=21.37 E-value=2e+02 Score=28.78 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 023453 203 TLQVAISLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFL 245 (282)
Q Consensus 203 ~LqLAls~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L 245 (282)
.+.+++..++.+.+++++.|++.|.+.. +.++++|++++.++
T Consensus 157 ~~~lalv~l~iil~~~~~~kg~~~~~~i-LigIvvG~ila~~l 198 (428)
T PRK10720 157 TIIISMVTLAVTVLGSVLFRGFLAIIPI-LIGVLVGYALSFAM 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhHH-HHHHHHHHHHHHHh
Confidence 4446665556666678888888886664 77777777776654
No 166
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=3e+02 Score=24.97 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChHHHHH-------HHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhH
Q 023453 179 IIKTSVAFLVIGVLTVLFPTEEGPTLQVAI-------SLIATMY-FIHERLKSKIRAFLYGAGAFIFSWLLGT 243 (282)
Q Consensus 179 i~~~~~~f~~L~~~~l~~~~~~~~~LqLAl-------s~~a~iY-fL~rK~kr~~RA~~l~lg~L~vG~~lGs 243 (282)
....+.+...++++.+.+|..+...+...+ |.+-.++ |-+|+...++.-++.++...++|.+++-
T Consensus 22 ~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~Gi~~ii~af~~r~~~~~W~lll~Gil~i~~gil~~~ 94 (185)
T COG3247 22 VLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISGIIEIISAFGNRSDNSFWPLLLSGILSILLGILAGF 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777764433333222 2233333 4455544466667777777777776665
No 167
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=20.91 E-value=53 Score=29.26 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=40.9
Q ss_pred CcccceeccCCCCCCCCCCCCCCCCCCCChhhhhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 023453 64 YSIKCAMDASYGDMSDGSTAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGH 122 (282)
Q Consensus 64 ~~~~~a~~as~G~~~~~~~~~fpr~~~~dPYe~LGVs~~AS~eEI~~A~~rL~~~y~~D 122 (282)
+-++-|...+|=| .+-+.+.+|-=+.||||+.+=.|.+++|-++++..|-+|
T Consensus 162 ~vL~~A~~~GYFd-------~PR~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~~ 213 (215)
T COG3413 162 EVLRLAYKMGYFD-------YPRRVSLKDLAKELGISKSTLSEHLRRAERKLIEAYFDE 213 (215)
T ss_pred HHHHHHHHcCCCC-------CCccCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4466666666654 223467889999999999999999999999999987654
No 168
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=20.80 E-value=1.8e+02 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhh
Q 023453 125 SIDAIESAHDKIIMQ 139 (282)
Q Consensus 125 ~~~~IEaAYD~Ilm~ 139 (282)
+-.++|.|+|+|+..
T Consensus 65 KK~~ln~afDAiLNK 79 (83)
T PF05814_consen 65 KKRDLNDAFDAILNK 79 (83)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456799999999863
No 169
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.80 E-value=2.7e+02 Score=26.85 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=35.1
Q ss_pred CChhhhhCCCC-CCCHHHHHHHHHHHHHHh-------CCCh-----------hhHHHHHHHHHHHHh
Q 023453 91 RDPYKRLGISR-EASEEEIQAARNFLVQKY-------AGHK-----------PSIDAIESAHDKIIM 138 (282)
Q Consensus 91 ~dPYe~LGVs~-~AS~eEI~~A~~rL~~~y-------~~D~-----------~~~~~IEaAYD~Ilm 138 (282)
.+=++.||+++ +-|.||+++-.++++++- +.|+ +..+++..||+.+..
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999 899999999888887543 2332 236678888888643
No 170
>PHA00024 IX minor coat protein
Probab=20.70 E-value=1.3e+02 Score=20.25 Aligned_cols=20 Identities=30% Similarity=0.442 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 023453 227 AFLYGAGAFIFSWLLGTFLM 246 (282)
Q Consensus 227 A~~l~lg~L~vG~~lGs~L~ 246 (282)
.++.-+|+.++||.+|.-+.
T Consensus 4 ~l~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 4 YLGYFFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677899999999988543
No 171
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.42 E-value=3.3e+02 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcccCCc
Q 023453 209 SLIATMYFIHERLKSKIRAFLYGAGAFIFSWLLGTFLMVAVIPPI 253 (282)
Q Consensus 209 s~~a~iYfL~rK~kr~~RA~~l~lg~L~vG~~lGs~L~~~~ip~~ 253 (282)
++++.+.++..-.++-+|..+++++.+++.+++++.+...++..+
T Consensus 255 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~p~~vQ~f 299 (774)
T PF03699_consen 255 ALLCAVLFFINIFRRNWRLPAIGLGLLVVSSILLGGIYPALVQQF 299 (774)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 444444444444555666678888888777555443333333333
No 172
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=20.33 E-value=3.3e+02 Score=22.12 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHhhhhcccCCcccccCC--ccHHHHHHHHHHHHHHHHh
Q 023453 229 LYGAGAFIFSWLLGTFLMVAVIPPIPIIKGL--RSFEVTTSLITYVLLWVSS 278 (282)
Q Consensus 229 ~l~lg~L~vG~~lGs~L~~~~ip~~~~~~~~--~s~e~i~Sl~t~vlLwl~s 278 (282)
.+++.++++|.+++.+....+.+.+. .. ...+.+....+++++++..
T Consensus 25 ~~~l~~~i~a~~~a~~~~~~~~~~l~---~~~~~~~~~~~~~iaf~~~f~~~ 73 (146)
T PF02674_consen 25 LFSLIGLIVALFVAFLFYPPLAPFLS---NYFSSLSPPFANIIAFIILFVLV 73 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHH
Confidence 35566666666666655444333331 10 1235566666666666554
Done!