Query 023455
Match_columns 282
No_of_seqs 234 out of 2137
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 1E-76 2.2E-81 537.0 28.8 258 14-281 2-265 (314)
2 PLN02297 ribose-phosphate pyro 100.0 3.7E-71 8.1E-76 509.3 30.5 268 13-280 13-280 (326)
3 PRK04923 ribose-phosphate pyro 100.0 1.1E-69 2.5E-74 500.4 29.3 260 12-281 2-268 (319)
4 PTZ00145 phosphoribosylpyropho 100.0 8.8E-69 1.9E-73 506.9 28.9 257 15-282 118-387 (439)
5 PRK02269 ribose-phosphate pyro 100.0 1.2E-68 2.6E-73 494.7 29.1 258 14-281 3-268 (320)
6 PRK02458 ribose-phosphate pyro 100.0 1.8E-68 3.9E-73 493.5 29.1 261 12-282 5-270 (323)
7 PRK00553 ribose-phosphate pyro 100.0 2.7E-68 5.9E-73 493.7 29.5 258 13-280 6-268 (332)
8 PRK07199 phosphoribosylpyropho 100.0 5.6E-68 1.2E-72 486.5 29.1 253 16-281 2-262 (301)
9 PRK02812 ribose-phosphate pyro 100.0 4.9E-67 1.1E-71 484.6 29.4 260 11-281 16-281 (330)
10 KOG1448 Ribose-phosphate pyrop 100.0 6.9E-68 1.5E-72 470.0 20.7 257 15-281 2-265 (316)
11 PRK03092 ribose-phosphate pyro 100.0 2.1E-65 4.6E-70 470.0 26.8 244 28-281 1-252 (304)
12 PRK01259 ribose-phosphate pyro 100.0 1.2E-64 2.5E-69 466.3 28.3 254 17-281 1-259 (309)
13 PRK00934 ribose-phosphate pyro 100.0 1.4E-64 3.1E-69 461.4 28.0 251 18-281 1-255 (285)
14 PRK06827 phosphoribosylpyropho 100.0 2.5E-63 5.4E-68 466.1 28.7 255 13-279 5-312 (382)
15 PLN02369 ribose-phosphate pyro 100.0 1.3E-62 2.7E-67 451.3 26.9 246 26-281 1-253 (302)
16 TIGR01251 ribP_PPkin ribose-ph 100.0 4.7E-62 1E-66 449.5 29.2 254 17-281 1-261 (308)
17 KOG1503 Phosphoribosylpyrophos 100.0 2E-52 4.4E-57 361.0 21.7 259 13-282 5-299 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 1E-37 2.2E-42 248.3 12.7 112 17-132 1-114 (116)
19 PF14572 Pribosyl_synth: Phosp 99.9 9.2E-24 2E-28 179.0 8.6 102 181-282 1-135 (184)
20 PRK13811 orotate phosphoribosy 99.7 1.8E-16 3.8E-21 134.6 13.1 136 124-267 3-141 (170)
21 PRK11595 DNA utilization prote 99.6 3.8E-16 8.2E-21 138.4 5.1 152 96-266 61-223 (227)
22 PLN02293 adenine phosphoribosy 99.6 3.5E-14 7.5E-19 122.2 13.4 111 169-282 51-177 (187)
23 COG1040 ComFC Predicted amidop 99.6 9.5E-15 2.1E-19 129.2 8.5 150 95-267 64-221 (225)
24 PRK09162 hypoxanthine-guanine 99.5 8.7E-14 1.9E-18 119.2 11.8 100 168-267 25-134 (181)
25 COG0634 Hpt Hypoxanthine-guani 99.5 1.1E-13 2.4E-18 115.9 11.5 98 168-265 20-128 (178)
26 TIGR01203 HGPRTase hypoxanthin 99.5 7.5E-14 1.6E-18 118.0 10.1 102 168-269 11-123 (166)
27 PRK08525 amidophosphoribosyltr 99.5 2.3E-13 5E-18 131.5 11.9 98 183-281 276-391 (445)
28 PRK15423 hypoxanthine phosphor 99.5 3.7E-13 8E-18 115.0 11.6 100 168-267 17-129 (178)
29 TIGR00201 comF comF family pro 99.5 3.6E-14 7.8E-19 122.4 4.9 145 100-266 36-188 (190)
30 PF00156 Pribosyltran: Phospho 99.5 6E-13 1.3E-17 106.2 10.6 99 168-267 13-125 (125)
31 PLN02238 hypoxanthine phosphor 99.4 9.9E-13 2.1E-17 113.4 11.3 99 168-266 20-133 (189)
32 PRK13812 orotate phosphoribosy 99.4 1.9E-12 4.1E-17 110.5 12.6 96 169-266 45-143 (176)
33 PRK02304 adenine phosphoribosy 99.4 2.5E-12 5.5E-17 109.5 11.3 95 183-277 51-161 (175)
34 PRK05205 bifunctional pyrimidi 99.4 2.9E-12 6.3E-17 109.3 10.1 100 168-267 15-133 (176)
35 PRK02277 orotate phosphoribosy 99.4 5E-12 1.1E-16 110.0 11.4 98 169-267 72-177 (200)
36 PRK07322 adenine phosphoribosy 99.3 1.1E-11 2.3E-16 106.1 11.9 97 170-266 39-156 (178)
37 TIGR01090 apt adenine phosphor 99.3 1.3E-11 2.7E-16 104.7 11.6 107 168-277 34-156 (169)
38 PTZ00149 hypoxanthine phosphor 99.3 8.8E-12 1.9E-16 111.0 10.5 99 168-266 66-186 (241)
39 TIGR01367 pyrE_Therm orotate p 99.3 2.1E-11 4.5E-16 105.1 12.5 96 168-267 44-142 (187)
40 PRK00129 upp uracil phosphorib 99.3 1.2E-11 2.5E-16 108.4 10.7 97 183-281 70-173 (209)
41 PTZ00271 hypoxanthine-guanine 99.3 1.6E-11 3.5E-16 107.4 11.3 99 168-266 36-154 (211)
42 PRK13809 orotate phosphoribosy 99.3 1.5E-11 3.3E-16 107.3 10.9 98 170-268 53-156 (206)
43 PRK00455 pyrE orotate phosphor 99.3 2.4E-11 5.2E-16 105.8 11.7 100 169-269 51-152 (202)
44 TIGR00336 pyrE orotate phospho 99.3 2.8E-11 6.1E-16 103.0 10.9 96 169-267 42-145 (173)
45 PRK12560 adenine phosphoribosy 99.3 2.3E-11 5E-16 104.8 10.4 96 171-266 39-150 (187)
46 PRK05793 amidophosphoribosyltr 99.3 4.2E-11 9.1E-16 116.6 11.8 107 171-278 276-401 (469)
47 TIGR01091 upp uracil phosphori 99.2 1.2E-10 2.6E-15 101.9 10.2 96 183-280 68-170 (207)
48 COG0856 Orotate phosphoribosyl 99.2 1.7E-10 3.6E-15 96.3 9.5 98 169-266 72-177 (203)
49 PRK13810 orotate phosphoribosy 99.1 4.9E-10 1.1E-14 96.5 11.0 84 183-267 73-159 (187)
50 PRK09219 xanthine phosphoribos 99.1 1.3E-09 2.8E-14 94.1 11.2 84 183-266 50-153 (189)
51 TIGR01744 XPRTase xanthine pho 99.1 1.5E-09 3.2E-14 93.8 11.2 97 170-266 36-153 (191)
52 PRK09123 amidophosphoribosyltr 99.1 1.3E-09 2.7E-14 106.4 11.9 110 169-279 281-417 (479)
53 COG0461 PyrE Orotate phosphori 99.0 3E-09 6.5E-14 92.1 12.4 83 183-265 61-147 (201)
54 PLN02440 amidophosphoribosyltr 99.0 2.3E-09 5.1E-14 104.7 11.9 100 169-268 261-378 (479)
55 PRK08558 adenine phosphoribosy 99.0 2.6E-09 5.7E-14 95.3 11.3 98 170-267 97-213 (238)
56 PRK07272 amidophosphoribosyltr 99.0 2.2E-09 4.7E-14 104.7 10.7 108 168-275 270-395 (484)
57 COG0503 Apt Adenine/guanine ph 98.9 9.1E-09 2E-13 88.1 11.0 96 169-267 42-153 (179)
58 PRK08341 amidophosphoribosyltr 98.9 6.1E-09 1.3E-13 100.6 10.2 100 169-269 257-373 (442)
59 PRK05500 bifunctional orotidin 98.9 7.9E-09 1.7E-13 100.4 11.0 83 183-266 344-429 (477)
60 TIGR01743 purR_Bsub pur operon 98.9 1.4E-08 3.1E-13 91.7 11.4 84 183-266 128-230 (268)
61 PRK06031 phosphoribosyltransfe 98.9 1.3E-08 2.8E-13 90.5 10.8 95 171-265 71-189 (233)
62 KOG1712 Adenine phosphoribosyl 98.9 7E-09 1.5E-13 85.6 8.2 115 168-282 44-174 (183)
63 PRK09177 xanthine-guanine phos 98.9 1.4E-08 3.1E-13 84.9 10.3 86 168-255 18-109 (156)
64 PRK09246 amidophosphoribosyltr 98.9 1.4E-08 3E-13 99.9 10.7 46 225-270 353-398 (501)
65 PRK09213 pur operon repressor; 98.9 2.4E-08 5.1E-13 90.5 11.2 84 183-266 130-232 (271)
66 COG2236 Predicted phosphoribos 98.8 9.3E-09 2E-13 88.5 7.7 96 168-264 15-121 (192)
67 PRK06781 amidophosphoribosyltr 98.8 2.4E-08 5.3E-13 97.2 11.0 102 169-270 269-388 (471)
68 PRK07349 amidophosphoribosyltr 98.8 2.9E-08 6.2E-13 97.2 10.9 101 168-268 297-415 (500)
69 PRK07631 amidophosphoribosyltr 98.8 4.2E-08 9.1E-13 95.6 10.4 101 169-269 269-387 (475)
70 KOG3367 Hypoxanthine-guanine p 98.8 3.9E-08 8.4E-13 82.1 8.4 98 168-265 45-160 (216)
71 TIGR01134 purF amidophosphorib 98.7 6.9E-08 1.5E-12 93.6 10.6 97 169-266 259-374 (442)
72 PRK06388 amidophosphoribosyltr 98.6 2.8E-07 6E-12 89.9 10.6 98 170-268 278-394 (474)
73 PRK07847 amidophosphoribosyltr 98.5 1.2E-06 2.7E-11 86.0 11.2 100 169-269 288-406 (510)
74 TIGR01251 ribP_PPkin ribose-ph 98.5 8.9E-06 1.9E-10 75.4 16.1 137 15-179 160-297 (308)
75 COG1926 Predicted phosphoribos 98.3 6.8E-06 1.5E-10 71.1 11.2 109 168-278 10-170 (220)
76 COG2065 PyrR Pyrimidine operon 98.1 3.2E-05 6.8E-10 64.5 9.8 97 170-266 17-133 (179)
77 COG0034 PurF Glutamine phospho 97.9 2.6E-05 5.7E-10 74.5 7.3 100 169-268 269-386 (470)
78 PLN02541 uracil phosphoribosyl 97.8 8.7E-05 1.9E-09 66.5 8.2 93 185-279 104-206 (244)
79 PF14681 UPRTase: Uracil phosp 97.7 0.00015 3.3E-09 63.4 8.7 94 184-279 68-170 (207)
80 COG0035 Upp Uracil phosphoribo 97.5 0.00052 1.1E-08 59.7 8.9 93 185-279 72-172 (210)
81 KOG0572 Glutamine phosphoribos 97.5 0.00027 5.8E-09 66.2 7.1 44 224-267 350-393 (474)
82 PRK07199 phosphoribosylpyropho 97.0 0.032 6.9E-07 51.6 15.4 133 15-179 161-293 (301)
83 PRK00934 ribose-phosphate pyro 96.9 0.042 9.1E-07 50.4 14.5 128 16-177 156-284 (285)
84 PRK04923 ribose-phosphate pyro 96.7 0.091 2E-06 49.0 15.8 139 14-179 166-307 (319)
85 PRK03092 ribose-phosphate pyro 96.7 0.13 2.7E-06 47.8 16.2 138 14-179 148-290 (304)
86 PRK15423 hypoxanthine phosphor 96.3 0.1 2.2E-06 44.6 12.3 104 5-111 23-136 (178)
87 PRK02458 ribose-phosphate pyro 96.0 0.21 4.6E-06 46.7 14.1 137 15-179 169-306 (323)
88 PRK01259 ribose-phosphate pyro 96.0 0.41 8.9E-06 44.5 15.8 139 16-179 160-298 (309)
89 PRK02269 ribose-phosphate pyro 96.0 0.35 7.6E-06 45.2 15.1 139 15-179 166-306 (320)
90 PF15609 PRTase_2: Phosphoribo 95.9 0.014 2.9E-07 50.3 5.0 39 229-267 120-158 (191)
91 PLN02369 ribose-phosphate pyro 95.7 0.6 1.3E-05 43.2 15.5 139 15-179 151-291 (302)
92 PRK09162 hypoxanthine-guanine 95.6 0.24 5.2E-06 42.3 11.5 98 6-106 32-135 (181)
93 PTZ00145 phosphoribosylpyropho 95.5 0.6 1.3E-05 45.4 15.0 137 16-179 280-425 (439)
94 COG0462 PrsA Phosphoribosylpyr 95.1 0.23 5.1E-06 46.0 10.4 135 16-179 164-303 (314)
95 TIGR01203 HGPRTase hypoxanthin 95.0 0.55 1.2E-05 39.5 11.7 98 5-106 17-122 (166)
96 PRK02812 ribose-phosphate pyro 94.9 1.9 4.1E-05 40.5 16.3 138 15-179 179-319 (330)
97 PF13793 Pribosyltran_N: N-ter 94.2 1.2 2.5E-05 35.4 11.1 75 193-267 8-88 (116)
98 PLN02238 hypoxanthine phosphor 93.8 1.5 3.3E-05 37.7 12.1 98 5-106 26-135 (189)
99 PTZ00271 hypoxanthine-guanine 92.8 2.1 4.6E-05 37.6 11.6 92 16-110 59-161 (211)
100 COG0634 Hpt Hypoxanthine-guani 92.8 2 4.3E-05 36.6 10.8 98 5-105 26-130 (178)
101 PRK06827 phosphoribosylpyropho 91.9 1.6 3.6E-05 41.7 10.4 140 16-179 209-357 (382)
102 PRK00553 ribose-phosphate pyro 91.9 2.3 4.9E-05 40.0 11.2 142 15-179 168-311 (332)
103 PTZ00149 hypoxanthine phosphor 91.2 3.1 6.6E-05 37.4 10.9 99 4-105 71-187 (241)
104 PF15610 PRTase_3: PRTase ComF 89.0 0.68 1.5E-05 42.0 4.8 41 225-265 133-173 (274)
105 PRK00129 upp uracil phosphorib 88.5 6.5 0.00014 34.2 10.6 86 16-104 71-160 (209)
106 KOG1017 Predicted uracil phosp 88.5 0.69 1.5E-05 40.1 4.3 36 225-260 184-219 (267)
107 PLN02440 amidophosphoribosyltr 88.2 8 0.00017 38.2 12.2 124 14-148 275-420 (479)
108 PRK09123 amidophosphoribosyltr 86.7 9.6 0.00021 37.6 11.7 86 14-103 295-395 (479)
109 PRK07272 amidophosphoribosyltr 86.0 4.5 9.7E-05 40.0 8.9 123 15-148 286-430 (484)
110 PRK05205 bifunctional pyrimidi 84.7 15 0.00034 30.9 10.6 88 15-105 32-133 (176)
111 PRK08525 amidophosphoribosyltr 83.8 8.6 0.00019 37.6 9.8 99 9-110 270-382 (445)
112 TIGR01090 apt adenine phosphor 83.6 14 0.0003 30.9 9.8 76 23-102 55-143 (169)
113 PRK05793 amidophosphoribosyltr 83.2 9 0.0002 37.7 9.7 91 15-108 289-393 (469)
114 PRK08341 amidophosphoribosyltr 83.0 8.8 0.00019 37.5 9.4 87 14-103 271-369 (442)
115 TIGR01091 upp uracil phosphori 82.9 17 0.00038 31.5 10.5 86 16-104 69-158 (207)
116 PLN02297 ribose-phosphate pyro 81.8 18 0.0004 33.9 10.8 82 184-267 16-105 (326)
117 PRK02304 adenine phosphoribosy 81.8 13 0.00029 31.1 9.1 80 16-99 53-145 (175)
118 TIGR01134 purF amidophosphorib 81.1 17 0.00037 35.5 10.7 87 15-104 274-374 (442)
119 PF14572 Pribosyl_synth: Phosp 77.2 9.6 0.00021 32.8 6.7 94 60-179 77-173 (184)
120 PF00156 Pribosyltran: Phospho 77.1 31 0.00067 26.5 10.8 85 16-104 29-124 (125)
121 PRK02277 orotate phosphoribosy 76.7 19 0.00041 31.1 8.6 84 16-103 87-175 (200)
122 PRK13811 orotate phosphoribosy 73.4 36 0.00077 28.6 9.3 68 23-97 65-133 (170)
123 PF01488 Shikimate_DH: Shikima 70.8 11 0.00024 30.2 5.4 37 225-265 7-43 (135)
124 PRK00455 pyrE orotate phosphor 70.7 48 0.001 28.5 9.7 79 15-99 65-144 (202)
125 TIGR01367 pyrE_Therm orotate p 69.6 71 0.0015 27.3 11.2 80 14-101 58-138 (187)
126 PLN02501 digalactosyldiacylgly 64.6 63 0.0014 33.8 10.3 103 21-132 283-396 (794)
127 COG2236 Predicted phosphoribos 64.1 49 0.0011 28.6 8.3 71 12-83 27-104 (192)
128 PLN02293 adenine phosphoribosy 63.3 96 0.0021 26.5 11.0 81 16-101 64-158 (187)
129 PRK13812 orotate phosphoribosy 62.9 74 0.0016 26.9 9.1 83 16-105 60-146 (176)
130 smart00450 RHOD Rhodanese Homo 61.1 17 0.00038 26.0 4.4 35 227-264 53-87 (100)
131 PRK06781 amidophosphoribosyltr 60.1 47 0.001 32.8 8.4 88 14-104 283-384 (471)
132 cd01529 4RHOD_Repeats Member o 60.0 19 0.0004 26.6 4.5 33 229-264 55-87 (96)
133 PRK09246 amidophosphoribosyltr 59.3 69 0.0015 31.9 9.5 86 16-104 295-394 (501)
134 cd00158 RHOD Rhodanese Homolog 58.5 21 0.00046 25.2 4.4 34 228-264 48-81 (89)
135 cd01444 GlpE_ST GlpE sulfurtra 58.3 18 0.00039 26.4 4.1 32 229-263 55-86 (96)
136 PRK07349 amidophosphoribosyltr 58.1 68 0.0015 32.0 9.1 85 15-103 313-412 (500)
137 PF01380 SIS: SIS domain SIS d 56.4 13 0.00029 28.7 3.3 81 11-98 2-83 (131)
138 PRK07631 amidophosphoribosyltr 56.3 69 0.0015 31.7 8.8 87 15-104 284-384 (475)
139 COG0856 Orotate phosphoribosyl 55.5 49 0.0011 28.4 6.5 74 23-101 95-174 (203)
140 cd04820 PA_M28_1_1 PA_M28_1_1: 55.3 31 0.00066 28.2 5.2 55 225-279 45-107 (137)
141 TIGR00336 pyrE orotate phospho 53.5 1.1E+02 0.0023 25.6 8.5 69 23-97 63-137 (173)
142 KOG0814 Glyoxylase [General fu 53.0 17 0.00038 31.2 3.5 44 222-268 23-66 (237)
143 cd05009 SIS_GlmS_GlmD_2 SIS (S 50.8 55 0.0012 26.0 6.2 94 5-104 4-97 (153)
144 PRK07847 amidophosphoribosyltr 50.3 1.1E+02 0.0024 30.5 9.2 79 23-104 311-403 (510)
145 PRK12560 adenine phosphoribosy 50.0 1.6E+02 0.0035 25.0 11.2 80 16-99 53-145 (187)
146 cd01523 RHOD_Lact_B Member of 48.9 30 0.00066 25.6 4.1 28 229-259 60-87 (100)
147 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.7 67 0.0015 24.7 6.1 81 17-105 2-82 (126)
148 cd01518 RHOD_YceA Member of th 47.4 38 0.00083 25.1 4.4 32 229-263 60-91 (101)
149 PRK11595 DNA utilization prote 47.1 74 0.0016 27.9 6.8 73 26-102 135-221 (227)
150 cd01528 RHOD_2 Member of the R 45.9 42 0.0009 24.9 4.4 33 229-264 57-89 (101)
151 cd01532 4RHOD_Repeat_1 Member 45.0 35 0.00075 25.1 3.8 32 229-263 49-82 (92)
152 cd01519 RHOD_HSP67B2 Member of 44.7 40 0.00086 25.1 4.2 33 229-264 65-97 (106)
153 PRK06388 amidophosphoribosyltr 44.6 1.6E+02 0.0034 29.2 9.3 78 24-104 301-392 (474)
154 cd05013 SIS_RpiR RpiR-like pro 44.1 69 0.0015 24.6 5.6 88 9-104 8-95 (139)
155 cd04814 PA_M28_1 PA_M28_1: Pro 43.7 51 0.0011 27.1 4.8 42 226-267 44-99 (142)
156 PF08410 DUF1737: Domain of un 41.3 87 0.0019 21.4 4.8 36 16-52 5-42 (54)
157 cd05014 SIS_Kpsf KpsF-like pro 41.0 1.5E+02 0.0033 22.7 7.2 78 16-102 2-80 (128)
158 cd01527 RHOD_YgaP Member of th 40.7 48 0.001 24.4 4.0 31 229-262 53-83 (99)
159 TIGR01809 Shik-DH-AROM shikima 40.0 60 0.0013 29.5 5.2 35 227-265 122-156 (282)
160 cd01524 RHOD_Pyr_redox Member 40.0 59 0.0013 23.5 4.4 30 230-263 51-80 (90)
161 PLN02962 hydroxyacylglutathion 38.8 49 0.0011 29.7 4.4 42 228-272 33-74 (251)
162 PF05124 S_layer_C: S-layer li 38.2 1E+02 0.0022 27.4 6.1 55 13-77 153-208 (222)
163 PRK13809 orotate phosphoribosy 37.8 2E+02 0.0043 25.0 7.9 69 24-97 77-147 (206)
164 PRK07322 adenine phosphoribosy 37.2 2.5E+02 0.0054 23.5 11.1 81 16-100 54-152 (178)
165 cd01525 RHOD_Kc Member of the 36.2 69 0.0015 23.7 4.3 32 229-263 64-95 (105)
166 PRK14093 UDP-N-acetylmuramoyla 35.6 3.4E+02 0.0073 26.5 10.1 106 28-151 298-412 (479)
167 cd01447 Polysulfide_ST Polysul 35.6 41 0.0009 24.7 3.0 32 229-263 60-91 (103)
168 PRK15482 transcriptional regul 34.4 81 0.0018 28.4 5.2 83 12-103 133-216 (285)
169 TIGR02981 phageshock_pspE phag 34.2 92 0.002 23.7 4.7 32 229-263 57-88 (101)
170 PLN02160 thiosulfate sulfurtra 33.9 70 0.0015 25.6 4.2 33 229-264 80-112 (136)
171 PF07931 CPT: Chloramphenicol 33.9 41 0.00089 28.5 2.9 32 234-268 86-118 (174)
172 TIGR01564 S_layer_MJ S-layer p 33.8 95 0.0021 31.3 5.8 58 12-78 501-558 (571)
173 PRK00676 hemA glutamyl-tRNA re 33.8 86 0.0019 29.6 5.3 36 225-264 169-204 (338)
174 PRK05320 rhodanese superfamily 33.7 76 0.0017 28.6 4.8 32 228-262 173-204 (257)
175 cd01533 4RHOD_Repeat_2 Member 32.3 88 0.0019 23.5 4.4 31 229-262 65-96 (109)
176 KOG1448 Ribose-phosphate pyrop 32.0 1.9E+02 0.0041 26.9 7.0 98 9-110 157-256 (316)
177 PRK08202 purine nucleoside pho 31.5 1.6E+02 0.0035 26.6 6.6 114 5-129 11-135 (272)
178 COG0169 AroE Shikimate 5-dehyd 31.2 1E+02 0.0022 28.4 5.2 36 226-265 122-157 (283)
179 PF07788 DUF1626: Protein of u 31.0 89 0.0019 22.5 3.8 35 4-40 34-70 (70)
180 cd01526 RHOD_ThiF Member of th 31.0 72 0.0016 24.7 3.8 33 229-264 71-104 (122)
181 TIGR03572 WbuZ glycosyl amidat 30.9 2.9E+02 0.0063 23.9 8.0 70 122-210 31-102 (232)
182 TIGR01698 PUNP purine nucleoti 30.7 1.4E+02 0.0031 26.6 6.0 102 17-129 2-113 (237)
183 cd01449 TST_Repeat_2 Thiosulfa 30.7 95 0.0021 23.5 4.4 33 229-264 77-109 (118)
184 cd01534 4RHOD_Repeat_3 Member 30.6 1E+02 0.0022 22.5 4.4 30 229-262 55-84 (95)
185 TIGR02990 ectoine_eutA ectoine 30.5 28 0.00061 31.1 1.4 91 15-108 8-132 (239)
186 PRK02122 glucosamine-6-phospha 29.7 76 0.0016 32.7 4.5 39 228-270 367-410 (652)
187 COG1926 Predicted phosphoribos 29.3 95 0.0021 27.4 4.4 136 15-179 25-211 (220)
188 cd01080 NAD_bind_m-THF_DH_Cycl 28.9 1.3E+02 0.0027 25.3 5.1 33 226-263 40-73 (168)
189 PRK10287 thiosulfate:cyanide s 28.7 1.3E+02 0.0029 22.9 4.8 32 229-263 59-90 (104)
190 PRK08564 5'-methylthioadenosin 28.5 53 0.0012 29.8 2.9 99 12-126 5-111 (267)
191 PRK11070 ssDNA exonuclease Rec 28.4 1.3E+02 0.0029 30.5 6.0 38 66-104 69-106 (575)
192 COG2065 PyrR Pyrimidine operon 28.3 1.7E+02 0.0037 24.9 5.6 69 6-74 22-104 (179)
193 COG0678 AHP1 Peroxiredoxin [Po 28.3 66 0.0014 26.9 3.1 53 228-280 35-95 (165)
194 PRK00258 aroE shikimate 5-dehy 27.9 1.3E+02 0.0028 27.1 5.4 36 227-266 120-155 (278)
195 cd05710 SIS_1 A subgroup of th 27.6 1.5E+02 0.0032 22.9 5.1 79 18-104 3-82 (120)
196 PRK00162 glpE thiosulfate sulf 27.6 83 0.0018 23.6 3.5 31 230-263 58-88 (108)
197 PHA01634 hypothetical protein 27.6 55 0.0012 26.8 2.5 33 226-264 25-57 (156)
198 PF02875 Mur_ligase_C: Mur lig 27.4 1.1E+02 0.0024 22.3 4.0 34 232-265 13-47 (91)
199 cd01522 RHOD_1 Member of the R 27.2 1.1E+02 0.0023 23.6 4.1 33 229-264 63-95 (117)
200 KOG0541 Alkyl hydroperoxide re 27.1 61 0.0013 27.3 2.7 34 246-279 67-100 (171)
201 PLN02469 hydroxyacylglutathion 27.0 91 0.002 28.0 4.1 38 229-271 21-58 (258)
202 cd04821 PA_M28_1_2 PA_M28_1_2: 26.6 1.9E+02 0.004 24.1 5.6 43 225-267 45-102 (157)
203 TIGR00393 kpsF KpsF/GutQ famil 26.6 2.1E+02 0.0045 25.2 6.4 76 16-99 2-78 (268)
204 PF02225 PA: PA domain; Inter 26.3 1.4E+02 0.0031 21.7 4.6 37 225-265 29-65 (101)
205 cd04822 PA_M28_1_3 PA_M28_1_3: 25.8 1.4E+02 0.003 24.7 4.7 41 225-265 43-97 (151)
206 PRK11337 DNA-binding transcrip 25.6 1.4E+02 0.003 26.9 5.2 84 11-103 137-221 (292)
207 PRK11557 putative DNA-binding 25.5 1.6E+02 0.0035 26.2 5.6 84 12-104 126-210 (278)
208 COG1134 TagH ABC-type polysacc 25.4 84 0.0018 28.3 3.5 38 231-268 166-206 (249)
209 PF10662 PduV-EutP: Ethanolami 25.3 88 0.0019 25.7 3.4 29 238-266 100-128 (143)
210 cd04731 HisF The cyclase subun 25.2 4.6E+02 0.0099 22.8 8.4 25 122-151 28-52 (243)
211 PF05368 NmrA: NmrA-like famil 25.0 1.2E+02 0.0026 26.0 4.4 78 13-100 21-99 (233)
212 PRK12749 quinate/shikimate deh 25.0 1.5E+02 0.0033 27.1 5.2 36 226-265 120-155 (288)
213 COG2185 Sbm Methylmalonyl-CoA 24.9 1.1E+02 0.0023 25.3 3.8 62 67-131 64-135 (143)
214 COG0287 TyrA Prephenate dehydr 24.6 57 0.0012 29.8 2.4 33 241-273 96-128 (279)
215 cd01773 Faf1_like1_UBX Faf1 ik 24.5 1.8E+02 0.0039 21.5 4.6 31 73-104 20-50 (82)
216 PRK12769 putative oxidoreducta 24.4 1.7E+02 0.0036 30.0 6.0 37 227-267 465-501 (654)
217 cd05005 SIS_PHI Hexulose-6-pho 24.3 4E+02 0.0088 21.9 8.0 81 9-103 28-109 (179)
218 TIGR03581 EF_0839 conserved hy 24.0 79 0.0017 28.0 3.0 28 244-271 135-162 (236)
219 COG0461 PyrE Orotate phosphori 23.7 3.8E+02 0.0083 23.3 7.2 85 16-106 61-152 (201)
220 TIGR03865 PQQ_CXXCW PQQ-depend 23.7 1.4E+02 0.0031 24.6 4.5 33 229-264 115-148 (162)
221 PF12641 Flavodoxin_3: Flavodo 23.4 4.3E+02 0.0093 21.9 7.5 13 25-37 11-23 (160)
222 cd04732 HisA HisA. Phosphorib 23.1 4.3E+02 0.0094 22.6 7.7 120 123-264 31-166 (234)
223 cd01453 vWA_transcription_fact 22.9 1.8E+02 0.0039 24.4 5.0 37 230-267 108-145 (183)
224 PRK14027 quinate/shikimate deh 22.7 1.6E+02 0.0034 26.9 4.9 35 227-265 124-158 (283)
225 PRK03803 murD UDP-N-acetylmura 22.7 3.7E+02 0.0079 25.8 7.7 148 28-202 280-433 (448)
226 COG0540 PyrB Aspartate carbamo 22.6 1.6E+02 0.0036 27.4 4.9 86 183-271 104-197 (316)
227 PRK13940 glutamyl-tRNA reducta 22.5 1.5E+02 0.0033 28.7 4.9 36 226-265 177-212 (414)
228 COG2120 Uncharacterized protei 22.4 84 0.0018 27.8 3.0 43 230-276 10-57 (237)
229 COG0034 PurF Glutamine phospho 22.4 3.6E+02 0.0078 26.6 7.3 85 15-103 284-383 (470)
230 PRK12548 shikimate 5-dehydroge 22.3 2E+02 0.0044 26.1 5.6 35 227-265 123-157 (289)
231 PF14502 HTH_41: Helix-turn-he 22.2 1.1E+02 0.0024 20.4 2.7 21 242-262 19-39 (48)
232 TIGR00299 conserved hypothetic 22.2 87 0.0019 30.1 3.1 27 236-264 254-280 (382)
233 PRK01033 imidazole glycerol ph 22.1 4.3E+02 0.0092 23.5 7.5 124 123-267 32-175 (258)
234 PRK05562 precorrin-2 dehydroge 22.1 1.3E+02 0.0029 26.5 4.1 36 224-265 19-55 (223)
235 PRK04194 hypothetical protein; 22.0 87 0.0019 30.2 3.1 27 236-264 255-281 (392)
236 COG3473 Maleate cis-trans isom 21.8 54 0.0012 29.0 1.5 23 86-108 108-130 (238)
237 PF13738 Pyr_redox_3: Pyridine 21.5 1.4E+02 0.003 24.7 4.1 36 226-266 163-198 (203)
238 TIGR00735 hisF imidazoleglycer 21.5 5.3E+02 0.012 22.7 8.0 22 242-263 153-174 (254)
239 PF10087 DUF2325: Uncharacteri 21.0 3.5E+02 0.0077 20.0 7.2 73 17-95 2-75 (97)
240 COG2072 TrkA Predicted flavopr 20.9 1.5E+02 0.0033 28.8 4.6 42 225-271 170-211 (443)
241 cd04819 PA_2 PA_2: Protease-as 20.7 2.3E+02 0.0051 22.2 5.0 40 226-267 41-80 (127)
242 PRK10241 hydroxyacylglutathion 20.6 1.1E+02 0.0023 27.3 3.3 35 231-270 22-56 (251)
243 COG4015 Predicted dinucleotide 20.5 4.1E+02 0.0089 22.7 6.4 26 121-149 29-54 (217)
244 PF03192 DUF257: Pyrococcus pr 20.4 70 0.0015 28.0 2.0 24 232-258 40-63 (210)
245 PF00581 Rhodanese: Rhodanese- 20.3 2.2E+02 0.0047 20.8 4.6 37 228-264 65-103 (113)
246 TIGR03413 GSH_gloB hydroxyacyl 20.2 1.4E+02 0.003 26.5 3.9 34 231-269 20-53 (248)
247 TIGR03455 HisG_C-term ATP phos 20.1 1.4E+02 0.0031 22.8 3.4 23 243-265 73-95 (100)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=1e-76 Score=537.01 Aligned_cols=258 Identities=27% Similarity=0.381 Sum_probs=238.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhc
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~ 91 (282)
.+++++|+|++|++||++||+.|| ++++++++++|||||+ +|++.|+|||+||||+||+++| |++||||+|+|||
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l~-~~l~~~~~~rF~DGE~--~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~ 78 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRLG-IPLGKVEVKRFPDGEI--YVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDAL 78 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHhC-CCcccceeEEcCCCcE--EEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 468999999999999999999996 9999999999999986 5566799999999999999985 7899999999999
Q ss_pred cccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023455 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (282)
Q Consensus 92 ~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~ 171 (282)
|++||++||+|+|||||+||||+|++|||+|+|.+|+||+. +|+|+|+|+|+|++|++|||+.|++|+ .+.+.
T Consensus 79 k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~-----aG~drv~TvDlH~~qiqgfFdipvdnl--~a~p~ 151 (314)
T COG0462 79 KRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLET-----AGADRVLTVDLHAPQIQGFFDIPVDNL--YAAPL 151 (314)
T ss_pred HhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHH-----cCCCeEEEEcCCchhhcccCCCccccc--cchHH
Confidence 99999999999999999999988899999999999999996 599999999999999999999999998 69999
Q ss_pred HHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEee-CCccEE-EeecCCCCCCeEEEEeccccchHHHH
Q 023455 172 LKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-GDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLI 247 (282)
Q Consensus 172 la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~-~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (282)
+++|++..+..+++++|+||.||++||+.+|+ ++++++++|+|. ..+.+. ..+.+|++||+|+|||||||||||+.
T Consensus 152 l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~ 231 (314)
T COG0462 152 LAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIA 231 (314)
T ss_pred HHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHH
Confidence 99999886545579999999999999999996 678999999996 555433 34589999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 248 ECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 248 ~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
++++.|+++||++|+++||||+|++.+.+++-++
T Consensus 232 ~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~ 265 (314)
T COG0462 232 KAAKALKERGAKKVYAAATHGVFSGAALERLEAS 265 (314)
T ss_pred HHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcC
Confidence 9999999999999999999999999999887654
No 2
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=3.7e-71 Score=509.31 Aligned_cols=268 Identities=79% Similarity=1.233 Sum_probs=244.3
Q ss_pred CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhcc
Q 023455 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALP 92 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~ 92 (282)
+.++++||+|++|++||++||+.|++++++.+++++|||||.+++|+++++|||+||||+||+++|+++||||++++|||
T Consensus 13 ~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dAlr 92 (326)
T PLN02297 13 NKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYALP 92 (326)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 56789999999999999999998623999999999999999999999999999999999999998999999999999999
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~l 172 (282)
++||++|++|+|||||+||||++++|||++++.+|+||++++..++|+|+|++||+|+.+.++||+.|++++++++.+.+
T Consensus 93 ~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l 172 (326)
T PLN02297 93 KLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLL 172 (326)
T ss_pred HcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHH
Confidence 99999999999999999999999999999999999999974432258999999999999999999988887655788999
Q ss_pred HHHHhcCCCCCCceEeecCCchhHHHHhhhcCCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchHHHHHHHHH
Q 023455 173 KQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKV 252 (282)
Q Consensus 173 a~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~ 252 (282)
++||.+..+.+++++|+||.|+.+|+..++.+.++.+++|+|...........++++||+|+|||||+|||+|+.++++.
T Consensus 173 ~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a~~~~~~~~~K~R~g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~ 252 (326)
T PLN02297 173 KKRLQQLPDSDNIVIAFPDDGAWKRFHKQFEHFPMVVCTKVREGDKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKV 252 (326)
T ss_pred HHHHHhccccCCcEEEecCccHHHHHHHHcCCCCEEEEEeEECCCceEEEecccccCCCeEEEEecccCcHHHHHHHHHH
Confidence 99997642246899999999999999988877899999999976544444457899999999999999999999999999
Q ss_pred HHHCCCCEEEEEEEccccCCchhhhhcC
Q 023455 253 LAAHGAAKKTWRMLLPTFGSRIRARSLS 280 (282)
Q Consensus 253 Lk~~GA~~V~v~~tH~~fs~~~~~~~~~ 280 (282)
|+++||++|+++||||+|++++++|+..
T Consensus 253 L~~~Ga~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 253 LAAHGAAKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred HHHCCCcEEEEEEECcccChhHHHHHHh
Confidence 9999999999999999999999999875
No 3
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.1e-69 Score=500.43 Aligned_cols=260 Identities=23% Similarity=0.284 Sum_probs=235.3
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHH
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIY 89 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~ 89 (282)
...++++||+|++|++||++||+.|| ++++++++++|||||. ++++.+++||+||||+||++.| |++||||++++
T Consensus 2 ~~~~~~~i~~g~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~--~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 2 QDQRNLLVFSGNANKPLAQSICKELG-VRMGKALVTRFSDGEV--QVEIEESVRRQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred CCCCceEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCE--EEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 34678999999999999999999996 9999999999999987 5555699999999999998765 68999999999
Q ss_pred hccccCcceEEEEeecCCCCCccccccC-CCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccch
Q 023455 90 ALPRLFVASFTLVLPFFPTGSFERMEEE-GDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETG 168 (282)
Q Consensus 90 a~~~~~a~~i~~viPY~~YsRqdr~~~~-g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~ 168 (282)
|||++||++|++|+|||||+||||++++ ++|++++.+|+||+. +|+|+|+++|+|++++++||+.|++++ ++
T Consensus 79 alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~ 151 (319)
T PRK04923 79 ALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISA-----MGADRVLTVDLHADQIQGFFDVPVDNV--YA 151 (319)
T ss_pred HHHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCceee--eC
Confidence 9999999999999999999999999965 679999999999996 589999999999999999999999988 68
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--C-CCEEEEEEEeeCCcc-EEEeecCCCCCCeEEEEeccccchH
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--H-FPTVVCAKVREGDKR-IVRIKEGNPAGCHVVIVDDLVQSGG 244 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~-~~~~~~~k~R~~~~~-i~~~~~~~v~gk~vlIVDDIi~TG~ 244 (282)
.+++++||.+.++.+++++|+||.|+++||+.+++ + .++.+++|+|...+. ......++++||+|+|||||+|||+
T Consensus 152 ~~~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~ 231 (319)
T PRK04923 152 SPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAG 231 (319)
T ss_pred hHHHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchH
Confidence 89999999664345789999999999999999986 4 688999999976542 2233478999999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 245 TLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 245 Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
||.++++.||++||++|+++||||+|++++++|+.++
T Consensus 232 Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s 268 (319)
T PRK04923 232 TLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNS 268 (319)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhC
Confidence 9999999999999999999999999999999998654
No 4
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=8.8e-69 Score=506.87 Aligned_cols=257 Identities=25% Similarity=0.285 Sum_probs=235.1
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~ 92 (282)
++++||+|++|++||++||+.|| ++++++++++|||||+++ ++.++|||+||||+||+++| |++||||++++|||
T Consensus 118 ~~m~I~sgs~~~~LA~~IA~~Lg-~~l~~~~~~rFpDGE~~V--ri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILFSGSSNPLLSKNIADHLG-TILGRVHLKRFADGEVSM--QFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEEECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEEE--EECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 67999999999999999999996 999999999999998755 55699999999999999876 67999999999999
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccC--CCCcccccchHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS--DHVLPLFETGIP 170 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~--~~v~~l~~~~~~ 170 (282)
++||++|++|+|||||+||||++++|+|++++.+|+||+. +|+|+|++||+|+.++++||+ +|++++ .+.+
T Consensus 195 ~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~-----~G~d~VitvDlHs~~i~~fF~~~iPvdnl--~a~~ 267 (439)
T PTZ00145 195 RASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEA-----MGVDRVVAIDLHSGQIQGFFGPRVPVDNL--EAQL 267 (439)
T ss_pred HhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHH-----cCCCeEEEEecChHHHHhhcCCCcccccc--cccH
Confidence 9999999999999999999999999999999999999996 589999999999999999997 799988 6789
Q ss_pred HHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--C------CCEEEEEEEeeCCccEE-EeecCCCCCCeEEEEecccc
Q 023455 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--H------FPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQ 241 (282)
Q Consensus 171 ~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~------~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~ 241 (282)
.+++|+.+. +..++|+|+||.|+.+|++.++. + +++.++.|+|...+++. ..+.++++||+|+|||||||
T Consensus 268 ~~a~~i~~~-~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIId 346 (439)
T PTZ00145 268 IGLDYFTKK-DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMID 346 (439)
T ss_pred HHHHHHhhc-CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeC
Confidence 999999764 35789999999999999998874 2 57899999998766543 23479999999999999999
Q ss_pred chHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 242 SGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 242 TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
||+|+.++++.|+++||++|+++||||+|++++++|+.+++
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~ 387 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASP 387 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCC
Confidence 99999999999999999999999999999999999997654
No 5
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.2e-68 Score=494.71 Aligned_cols=258 Identities=28% Similarity=0.381 Sum_probs=234.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhc
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~ 91 (282)
.++++||+|++|++||++||++|| ++++++++++|||||+++ ++.++|||+||||+||+++| +++||||++++||
T Consensus 3 ~~~~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~v--~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~al 79 (320)
T PRK02269 3 YSDLKLFALSSNKELAEKVAQEIG-IELGKSSVRQFSDGEIQV--NIEESIRGHHVFILQSTSSPVNDNLMEILIMVDAL 79 (320)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE--EECCCCCCCEEEEEecCCCCccchHHHHHHHHHHH
Confidence 467999999999999999999996 999999999999998755 55699999999999999764 6899999999999
Q ss_pred cccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023455 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (282)
Q Consensus 92 ~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~ 171 (282)
|++||++|++|+|||||+||||++++|+|++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.++
T Consensus 80 r~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~-----~g~d~vit~D~H~~~~~~~f~~p~~~l--~~~p~ 152 (320)
T PRK02269 80 KRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEV-----AGVDRLLTVDLHAAQIQGFFDIPVDHL--MGAPL 152 (320)
T ss_pred HHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCEEEEECCChHHHhccccCCchhh--hhHHH
Confidence 99999999999999999999999999999999999999996 589999999999999999999999988 68999
Q ss_pred HHHHHhcC-CCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCC--c-cEEEeecCCCCCCeEEEEeccccchHH
Q 023455 172 LKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--K-RIVRIKEGNPAGCHVVIVDDLVQSGGT 245 (282)
Q Consensus 172 la~~l~~~-~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~--~-~i~~~~~~~v~gk~vlIVDDIi~TG~T 245 (282)
+++|+.+. ++.+++++|+||.|+++||+.+++ +.++.+++|+|... + .......++++||+|+|||||+|||+|
T Consensus 153 l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T 232 (320)
T PRK02269 153 IADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGT 232 (320)
T ss_pred HHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHH
Confidence 99999764 334789999999999999999986 67888888888643 2 222335789999999999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 246 LIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 246 l~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
+.++++.|+++||++|+++||||+|++++++|+..+
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~ 268 (320)
T PRK02269 233 ICHAADALAEAGATEVYASCTHPVLSGPALDNIQKS 268 (320)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhC
Confidence 999999999999999999999999999999998654
No 6
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-68 Score=493.53 Aligned_cols=261 Identities=24% Similarity=0.363 Sum_probs=235.8
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHH
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIY 89 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~ 89 (282)
...++++||+|++|++||++||+.|| ++++++++++|||||. ++++.++|||+||+|+||++.| +++||||++++
T Consensus 5 ~~~~~~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~--~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 5 YADKQIKLFSLNSNLEIAEKIAQAAG-VPLGKLSSRQFSDGEI--MINIEESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCE--EEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 45678999999999999999999996 9999999999999987 4555699999999999999765 68999999999
Q ss_pred hccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchH
Q 023455 90 ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (282)
Q Consensus 90 a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~ 169 (282)
|||++||++|++|+|||||+||||++++|+|++++.+|+||+. +|+|+|+++|+|+.++++||++|++++ .+.
T Consensus 82 alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~i~~~F~~p~~nl--~~~ 154 (323)
T PRK02458 82 ACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVK-----AGVDRVLTLDLHAVQVQGFFDIPVDNL--FTV 154 (323)
T ss_pred HHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCeEEEEecCcHHhhccccCCceEE--EEH
Confidence 9999999999999999999999999999999999999999996 589999999999999999999999988 688
Q ss_pred HHHHHHHhcC-CCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchHHH
Q 023455 170 PLLKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTL 246 (282)
Q Consensus 170 ~~la~~l~~~-~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl 246 (282)
+++++|+.+. ++.+++++|+||.|+++||+.+++ +.++.++++.|...........++++||+|+|||||+|||+|+
T Consensus 155 p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIidTG~Tl 234 (323)
T PRK02458 155 PLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILNTGKTF 234 (323)
T ss_pred HHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCcceeeccccccCCCEEEEEcceeCcHHHH
Confidence 9999999764 334789999999999999999986 6788888877654332222346899999999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 247 IECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 247 ~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
.++++.|+++||++|+++||||+|++++.+++.++|
T Consensus 235 ~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~ 270 (323)
T PRK02458 235 AEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAP 270 (323)
T ss_pred HHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCC
Confidence 999999999999999999999999999999987653
No 7
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.7e-68 Score=493.70 Aligned_cols=258 Identities=24% Similarity=0.312 Sum_probs=235.8
Q ss_pred CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHh
Q 023455 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYA 90 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a 90 (282)
..++++||+|++|++||++||+.|| ++++++++++|||||. ++++.++|||+||||+||+++| |++||||++++|
T Consensus 6 ~~~~~~i~~~~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~--~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~a 82 (332)
T PRK00553 6 DKSNHVIFSLSKAKKLVDSICRKLS-MKPGEIVIQKFADGET--YIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDA 82 (332)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCE--EEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHH
Confidence 5689999999999999999999996 9999999999999987 5566699999999999999864 689999999999
Q ss_pred ccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHH
Q 023455 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (282)
Q Consensus 91 ~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~ 170 (282)
||++||++|++|+|||||+||||++++|+|++++.+|+||+. +|+|+|+++|+|++++++||+.|++++ ++.+
T Consensus 83 lr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~-----~g~d~vit~DlH~~~i~~~F~ipv~~l--~a~~ 155 (332)
T PRK00553 83 LKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK-----AGVTRVTLTDIHSDQTQGFFDIPVDIL--RTYH 155 (332)
T ss_pred HHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCccee--echH
Confidence 999999999999999999999999999999999999999996 589999999999999999999999988 6889
Q ss_pred HHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEE-EeecCCCCCCeEEEEeccccchHHHH
Q 023455 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLI 247 (282)
Q Consensus 171 ~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (282)
.+++|+.+..+.++++||+||.|+++|++.+++ ++++.+++|+|...+... ....++++||+|+|||||+|||+|+.
T Consensus 156 ~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 156 VFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHH
Confidence 999999653345789999999999999999986 678999999987654322 22468999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEEccccCCchhhhhcC
Q 023455 248 ECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLS 280 (282)
Q Consensus 248 ~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~ 280 (282)
++++.|+++||++|+++||||+|++++++|+.+
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~ 268 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDE 268 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecCchHHHHHHh
Confidence 999999999999999999999999999999853
No 8
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=5.6e-68 Score=486.49 Aligned_cols=253 Identities=22% Similarity=0.259 Sum_probs=229.4
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcccc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~ 94 (282)
+++||+|++|++||++||+.|| ++++++++++|||||.++ ++.++|||+||||+||+++| +++||||++++|||++
T Consensus 2 ~~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~F~dGE~~v--~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~ 78 (301)
T PRK07199 2 QPLLLALPGNEAAAGRLAAALG-VEVGRIELHRFPDGESYV--RLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAAREL 78 (301)
T ss_pred ceEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE--EECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHc
Confidence 4689999999999999999996 999999999999998755 55699999999999999764 6799999999999999
Q ss_pred CcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCc---hhhhcccCCCCcccccchHHH
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA---LQERFYFSDHVLPLFETGIPL 171 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~---~~~~gff~~~v~~l~~~~~~~ 171 (282)
||++|++|+|||||+||||++++|||+++|.+|+||+. |+|+|+++|+|+ .+++|||++|++++ ++.+.
T Consensus 79 ~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~------~~d~vit~DlH~~~~~~~~~~f~ip~~nl--~~~~~ 150 (301)
T PRK07199 79 GARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG------SFDRLVTVDPHLHRYPSLSEVYPIPAVVL--SAAPA 150 (301)
T ss_pred CCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh------hcCeEEEEeccchhhHHhcCcccCCcccc--chHHH
Confidence 99999999999999999999999999999999999984 799999999998 56789999999988 68899
Q ss_pred HHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEE--EeecCCCCCCeEEEEeccccchHHHH
Q 023455 172 LKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV--RIKEGNPAGCHVVIVDDLVQSGGTLI 247 (282)
Q Consensus 172 la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~--~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (282)
+++||.+. .+++++|+||.|+.+|+..+++ +.++.+++|.|....... ....++++||+|+|||||+|||+|+.
T Consensus 151 la~~l~~~--~~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~ 228 (301)
T PRK07199 151 IAAWIRAH--VPRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLI 228 (301)
T ss_pred HHHHHHhc--CCCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHH
Confidence 99999774 4688999999999999999986 678889999998764322 22245789999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 248 ECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 248 ~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
++++.||++||++|+++||||+|++++.+|+..+
T Consensus 229 ~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~ 262 (301)
T PRK07199 229 EAARQLRAAGAASPDCVVVHALFAGDAYSALAAA 262 (301)
T ss_pred HHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhC
Confidence 9999999999999999999999999999998543
No 9
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=4.9e-67 Score=484.64 Aligned_cols=260 Identities=24% Similarity=0.345 Sum_probs=236.8
Q ss_pred hCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHH
Q 023455 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVI 88 (282)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~ 88 (282)
.+..++++||+|++|++||++||+.|| ++++++++++|||||. ++++.++|||+||||+||++.| |++||||+++
T Consensus 16 ~~~~~~~~i~~g~~~~~la~~ia~~lg-~~l~~~~~~~FpDGE~--~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~ 92 (330)
T PRK02812 16 LSDNNRLRLFSGSSNPALAQEVARYLG-MDLGPMIRKRFADGEL--YVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMV 92 (330)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHhC-CCceeeEEEECCCCCE--EEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHH
Confidence 456788999999999999999999996 9999999999999987 4555699999999999998765 6899999999
Q ss_pred HhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccch
Q 023455 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETG 168 (282)
Q Consensus 89 ~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~ 168 (282)
+|||++||++|++|+|||||+||||++++|+|+++|.+|+||+. +|+|+|+++|+|+.++++||++|++++ ++
T Consensus 93 ~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~-----~g~d~vitvDlH~~~~~~fF~ipv~nl--~~ 165 (330)
T PRK02812 93 DACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITK-----AGADRVLAMDLHSAQIQGYFDIPCDHV--YG 165 (330)
T ss_pred HHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHcCccCCCceee--eC
Confidence 99999999999999999999999999999999999999999996 589999999999999999999999988 68
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc---CCCEEEEEEEeeCCccE-EEeecCCCCCCeEEEEeccccchH
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGG 244 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~---~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~ 244 (282)
.+.+++||.+. +.+++++|+||.|+.+|+..+++ +.++.+++|+|...+.. .....++++||+|+|||||+|||+
T Consensus 166 ~~~l~~~i~~~-~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~ 244 (330)
T PRK02812 166 SPVLLDYLASK-NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGG 244 (330)
T ss_pred hHHHHHHHHhc-CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHH
Confidence 99999999764 35789999999999999999986 36889999999765432 223467899999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 245 TLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 245 Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
|+.++++.|+++||++|++++|||+|++++++|+.++
T Consensus 245 T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~ 281 (330)
T PRK02812 245 TICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSG 281 (330)
T ss_pred HHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhC
Confidence 9999999999999999999999999999999998744
No 10
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-68 Score=469.96 Aligned_cols=257 Identities=27% Similarity=0.386 Sum_probs=236.6
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~ 92 (282)
++++||+|++|++||++||++|| ++++++++++|+|||+ .|++.++|||+||||+||++++ +++||||+|++||+
T Consensus 2 ~~i~lf~g~shp~La~~I~~~lg-i~l~~v~~kkf~nge~--~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~ 78 (316)
T KOG1448|consen 2 KNIKLFSGDSHPELAERIAARLG-IELGKVNLKKFSNGET--SVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACK 78 (316)
T ss_pred CceEEEcCCCCHHHHHHHHHHhC-CCcceeeeEEccCCcE--EEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcc
Confidence 57899999999999999999997 9999999999999987 5577799999999999999998 89999999999999
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~l 172 (282)
++++++||+|+|||||+||||+.+.+.+++||++|+||.. +|+|++|++|+|..|.+|||..||+|+ ...+.+
T Consensus 79 ~asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~-----aG~dhvItmDlHa~Q~qgfF~ipVdnl--y~~p~~ 151 (316)
T KOG1448|consen 79 RASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSS-----AGADHVITMDLHASQIQGFFDIPVDNL--YAEPAV 151 (316)
T ss_pred hhhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhc-----cCCceEEEecccchhhCceeeccchhh--ccchHH
Confidence 9999999999999999999999888899999999999996 589999999999999999999999998 578899
Q ss_pred HHHHhcC-CCCCCceEeecCCchhHHHHhhhcCCC--EEEEEEEeeCCccE--EEeecCCCCCCeEEEEeccccchHHHH
Q 023455 173 KQRLHQL-PDANNIVIAFPDDGAWKRFHKMLDHFP--TVVCAKVREGDKRI--VRIKEGNPAGCHVVIVDDLVQSGGTLI 247 (282)
Q Consensus 173 a~~l~~~-~~~~~~viv~pd~g~~~ra~~~a~~~~--~~~~~k~R~~~~~i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (282)
.+|++.. .++++.++|+||.||.+|++.+++.++ +..++|+|+...++ ...+.||++||.++|||||++|+||+.
T Consensus 152 l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~ 231 (316)
T KOG1448|consen 152 LNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLI 231 (316)
T ss_pred HHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHH
Confidence 9999874 467899999999999999999997554 45567777766543 345799999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 248 ECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 248 ~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
++++.|.+.||++|++++|||+|+++++||+-++
T Consensus 232 ~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s 265 (316)
T KOG1448|consen 232 KAADKLLEHGAKKVYAIVTHGVFSGPAIERLNES 265 (316)
T ss_pred HHHHHHHhcCCceEEEEEcceeccccHHHHhhhc
Confidence 9999999999999999999999999999998654
No 11
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.1e-65 Score=470.04 Aligned_cols=244 Identities=24% Similarity=0.357 Sum_probs=222.3
Q ss_pred HHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhccccCcceEEEEeec
Q 023455 28 LARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPF 105 (282)
Q Consensus 28 la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~~~~a~~i~~viPY 105 (282)
||++||+.|| ++++++++++|||||.++ ++.++|||+||||+||+++| +++||||++++|||++||++|++|+||
T Consensus 1 la~~ia~~l~-~~l~~~~~~~F~DGE~~v--ri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPY 77 (304)
T PRK03092 1 LAEEVAKELG-VEVTPTTAYDFANGEIYV--RFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPF 77 (304)
T ss_pred CHHHHHHHhC-CceeeeEEEECCCCCEEE--EECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 6899999996 999999999999998755 55699999999999999875 679999999999999999999999999
Q ss_pred CCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcCCCCCCc
Q 023455 106 FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNI 185 (282)
Q Consensus 106 ~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~~l~~~~~~~~~ 185 (282)
|||+||||++++|+|++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.+.+++||.+.++.+++
T Consensus 78 l~YaRQDr~~~~~e~isak~va~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~la~~i~~~~~~~~~ 150 (304)
T PRK03092 78 YPYARQDKKHRGREPISARLVADLFKT-----AGADRIMTVDLHTAQIQGFFDGPVDHL--FAMPLLADYVRDKYDLDNV 150 (304)
T ss_pred ccccccccccCCCCCccHHHHHHHHHh-----cCCCeEEEEecChHHHHhhcCCCeeeE--echHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999996 589999999999999999999999988 7899999999775456789
Q ss_pred eEeecCCchhHHHHhhhc--C-CCEEEEEEEeeCC--ccE-EEeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCC
Q 023455 186 VIAFPDDGAWKRFHKMLD--H-FPTVVCAKVREGD--KRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAA 259 (282)
Q Consensus 186 viv~pd~g~~~ra~~~a~--~-~~~~~~~k~R~~~--~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~ 259 (282)
++|+||.|+++||+.+++ + .++.+++|.|+.. +.. .....++++||+|+|||||+|||+|+.++++.|++.||+
T Consensus 151 vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~ 230 (304)
T PRK03092 151 TVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAK 230 (304)
T ss_pred EEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCC
Confidence 999999999999999986 5 7889999999743 222 223478999999999999999999999999999999999
Q ss_pred EEEEEEEccccCCchhhhhcCC
Q 023455 260 KKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 260 ~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
+|+++||||+|++++.+++..+
T Consensus 231 ~I~~~~tH~v~~~~a~~~l~~~ 252 (304)
T PRK03092 231 DVIIAATHGVLSGPAAERLKNC 252 (304)
T ss_pred eEEEEEEcccCChHHHHHHHHC
Confidence 9999999999999999998764
No 12
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.2e-64 Score=466.30 Aligned_cols=254 Identities=26% Similarity=0.332 Sum_probs=232.2
Q ss_pred eEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhcccc
Q 023455 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (282)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~~~ 94 (282)
++||+|++|++||++||+.|| ++++++++++|||||.++ ++.++|+|+||+|+||++.| +++|||+++++|||++
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE~~v--ri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ 77 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYLG-IPLGKASVGRFSDGEISV--EINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRA 77 (309)
T ss_pred CEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEEE--EeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 579999999999999999996 999999999999998755 55699999999999998654 6899999999999999
Q ss_pred CcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHH
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~ 174 (282)
|+++|++|+|||||+||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ .+.+.+++
T Consensus 78 ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~l~~ 150 (309)
T PRK01259 78 SAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET-----AGADRVLTMDLHADQIQGFFDIPVDNL--YGSPILLE 150 (309)
T ss_pred CCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh-----cCCCEEEEEcCChHHHcCcCCCCceee--eecHHHHH
Confidence 99999999999999999999999999999999999996 589999999999999999999999988 68899999
Q ss_pred HHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccE-EEeecCCCCCCeEEEEeccccchHHHHHHHH
Q 023455 175 RLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQK 251 (282)
Q Consensus 175 ~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~ 251 (282)
|+.+. +++++++++||.||+.||..+++ +.++.+++|.|...+.. .....++++||+|+|||||+|||+|+.++++
T Consensus 151 ~i~~~-~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~ 229 (309)
T PRK01259 151 DIKQK-NLENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAE 229 (309)
T ss_pred HHHhc-CCCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHH
Confidence 99764 46789999999999999999986 78888899988765532 2234678999999999999999999999999
Q ss_pred HHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 252 VLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 252 ~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
.|+++||++|+++||||+|++++.+++..+
T Consensus 230 ~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~ 259 (309)
T PRK01259 230 ALKERGAKSVYAYATHPVLSGGAIERIENS 259 (309)
T ss_pred HHHccCCCEEEEEEEeeeCChHHHHHHhcC
Confidence 999999999999999999999999998653
No 13
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.4e-64 Score=461.44 Aligned_cols=251 Identities=21% Similarity=0.268 Sum_probs=227.6
Q ss_pred EEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCc
Q 023455 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (282)
Q Consensus 18 ~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a 96 (282)
+||+|++|++||++||+.|| ++++++++++|||||.++ ++.++|+|+||||+|++.++ |++||||++++|||++||
T Consensus 1 ~i~~~~~~~~la~~ia~~l~-~~~~~~~~~~FpdGE~~v--~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga 77 (285)
T PRK00934 1 MIIGGSASQLLASEVARLLN-TELALVETKRFPDGELYV--RILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA 77 (285)
T ss_pred CeEeCCCCHHHHHHHHHHHC-CceEeeEEEECCCCCEEE--EECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 48999999999999999996 999999999999998755 55689999999999998775 559999999999999999
Q ss_pred ceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHH
Q 023455 97 ASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRL 176 (282)
Q Consensus 97 ~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~~l 176 (282)
++|++|+|||||+||||++++|||++++.+|+||++ +| |+|+++|+|+.++++||+.|++++ ++.+.++++|
T Consensus 78 ~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~-----~~-d~vitvD~H~~~~~~~f~~~~~~l--~a~~~la~~i 149 (285)
T PRK00934 78 KSITLVIPYLGYARQDKRFKPGEPISARAIAKIISA-----YY-DRIITINIHEPSILEFFPIPFINL--DAAPLIAEYI 149 (285)
T ss_pred CeEEEEecCCcccccccccCCCCCccHHHHHHHHHH-----hc-CEEEEEcCChHHHcCcCCCcEeEe--ecHHHHHHHH
Confidence 999999999999999999999999999999999996 36 999999999999999999999987 6899999999
Q ss_pred hcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEE-EeecCCCCCCeEEEEeccccchHHHHHHHHHH
Q 023455 177 HQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLIECQKVL 253 (282)
Q Consensus 177 ~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~L 253 (282)
.+. ++++++++||.|+.+++..+++ +.++.+++|.|....... ....++++||+|+|||||+|||+|+.++++.|
T Consensus 150 ~~~--~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~L 227 (285)
T PRK00934 150 GDK--LDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKIL 227 (285)
T ss_pred Hhc--CCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHH
Confidence 653 4678999999999999999986 678888999997654332 22346899999999999999999999999999
Q ss_pred HHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 254 AAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 254 k~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
+++||++|+++|+||+|++++.+++..+
T Consensus 228 k~~GA~~V~~~~~H~i~~~~a~~~l~~~ 255 (285)
T PRK00934 228 KEQGAKKVYVACVHPVLVGDAILKLYNA 255 (285)
T ss_pred HHCCCCEEEEEEEeeccCcHHHHHHHhC
Confidence 9999999999999999999999998654
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.5e-63 Score=466.10 Aligned_cols=255 Identities=20% Similarity=0.224 Sum_probs=226.0
Q ss_pred CCCceEEEecCCCHHHHHHHHHHc---------------C----Ccc--eeeeeEeeeCCCceeEEEecCCCCCCCeEEE
Q 023455 13 QKKQVHLFYCVECEELARKVAAQS---------------D----LIT--LQSINWRNFADGWPNLYINSAHDIRGQHVAF 71 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l---------------~----~~~--~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~i 71 (282)
+.+++.||+|+++++||++||+.| | +++ ++++++++|||||++ +++.++|||+||||
T Consensus 5 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~--vri~~~Vrg~dV~i 82 (382)
T PRK06827 5 PVGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAK--GEILESVRGKDIYI 82 (382)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEE--EEECCCCCCCeEEE
Confidence 457899999999999999999999 3 355 999999999999874 45569999999999
Q ss_pred EeecC---------------C-chhhHHHHHHHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCC
Q 023455 72 LASFS---------------S-PGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPT 135 (282)
Q Consensus 72 iqs~~---------------~-~~~lmelll~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~ 135 (282)
+||++ + +|++||||++++||| +||++|++|+|||||+||||+ .+|+|+|++.+|+||+.
T Consensus 83 vqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~--- 157 (382)
T PRK06827 83 LQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEE--- 157 (382)
T ss_pred EecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHH---
Confidence 99986 2 378999999999999 999999999999999999999 78999999999999996
Q ss_pred CCCCCCEEEEEeCCchhhhcccC-CCCcccccchHHHHHHHHhcC---C--CCCCceEeecCCchhHHHHhhhc--CCCE
Q 023455 136 SRGGPTSLVIYDIHALQERFYFS-DHVLPLFETGIPLLKQRLHQL---P--DANNIVIAFPDDGAWKRFHKMLD--HFPT 207 (282)
Q Consensus 136 ~~~g~d~Ii~vdlH~~~~~gff~-~~v~~l~~~~~~~la~~l~~~---~--~~~~~viv~pd~g~~~ra~~~a~--~~~~ 207 (282)
+|+|+|+++|+|+.+++|||+ .|++++ ++.+.+++|+.+. . +.++++||+||.||++||+.++. +.++
T Consensus 158 --~G~d~vitvDlHs~~i~~~F~~~pvdnl--~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ 233 (382)
T PRK06827 158 --LGVDNIITFDAHDPRIENAIPLMGFENL--YPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDL 233 (382)
T ss_pred --cCCCeEEEecCChHHhcccCCCCCcCCc--CchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhCCCE
Confidence 589999999999999999998 589987 6888999999653 1 23689999999999999999986 6789
Q ss_pred EEEEEEeeCCc------cEE-EeecC-CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhc
Q 023455 208 VVCAKVREGDK------RIV-RIKEG-NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 208 ~~~~k~R~~~~------~i~-~~~~~-~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~ 279 (282)
++++|+|.... .+. ....+ +++||+|+|||||+|||+|+.++++.|+++||++|+++||||+|+ ++++|+.
T Consensus 234 ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~ 312 (382)
T PRK06827 234 GLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFD 312 (382)
T ss_pred EEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHH
Confidence 99999997532 112 22356 899999999999999999999999999999999999999999999 9998874
No 15
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.3e-62 Score=451.28 Aligned_cols=246 Identities=23% Similarity=0.321 Sum_probs=222.1
Q ss_pred HHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhccccCcceEEEEe
Q 023455 26 EELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 26 ~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~~~~a~~i~~vi 103 (282)
++||++||+.|| ++++.+++++|||||.++ ++.++|||+||||+||+++| +++||||++++|||++|+++|++|+
T Consensus 1 ~~lA~~ia~~lg-~~l~~~~~~~FpdGE~~v--~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~Vi 77 (302)
T PLN02369 1 PALSQEIACYLG-LELGKITIKRFADGEIYV--QLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVI 77 (302)
T ss_pred ChHHHHHHHHhC-CceeeeEEEECCCCCEEE--EECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 379999999996 999999999999998755 55699999999999999865 6899999999999999999999999
Q ss_pred ecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcC-CCC
Q 023455 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQL-PDA 182 (282)
Q Consensus 104 PY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~~l~~~-~~~ 182 (282)
|||||+||||++++|+|++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.+.+++||.+. ...
T Consensus 78 PYl~YsRQDr~~~~~e~isak~va~lL~~-----~g~d~vi~vDlHs~~i~~~F~ip~~~l--~~~~~~~~~i~~~~~~~ 150 (302)
T PLN02369 78 PYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDHV--YGQPVILDYLASKTISS 150 (302)
T ss_pred ecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHhhccCCceecc--cchHHHHHHHHHhCCCC
Confidence 99999999999999999999999999996 589999999999999999999999988 6889999999664 223
Q ss_pred CCceEeecCCchhHHHHhhhc---CCCEEEEEEEeeCCccE-EEeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCC
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGA 258 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~---~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA 258 (282)
+++++|+||.||++|+..+++ +.++.+++|+|...+.. .....++++||+|+|||||++||+|+.++++.|++.||
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga 230 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGA 230 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCC
Confidence 678999999999999998874 56889999999765432 22346899999999999999999999999999999999
Q ss_pred CEEEEEEEccccCCchhhhhcCC
Q 023455 259 AKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 259 ~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
++|++++|||+|++++.+++.++
T Consensus 231 ~~v~~~~tH~v~~~~a~~~l~~~ 253 (302)
T PLN02369 231 REVYACATHAVFSPPAIERLSSG 253 (302)
T ss_pred CEEEEEEEeeeeCHHHHHHHHhC
Confidence 99999999999999999988654
No 16
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=4.7e-62 Score=449.48 Aligned_cols=254 Identities=26% Similarity=0.380 Sum_probs=231.2
Q ss_pred eEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEE-eecCCc--hhhHHHHHHHHhccc
Q 023455 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL-ASFSSP--GVIFEQISVIYALPR 93 (282)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~ii-qs~~~~--~~lmelll~~~a~~~ 93 (282)
++||+|++|++||++||+.|| ++++++++++|||||.++ ++.++++|+||+|+ ||+++| +++|||+++++|||+
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE~~v--~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~ 77 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNLG-LPLGDVEVKRFPDGELYV--RINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKR 77 (308)
T ss_pred CEEEECCCCHHHHHHHHHHhC-CeeeeeEEEECCCCCEEE--EECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHH
Confidence 479999999999999999996 999999999999998755 55699999999999 999754 689999999999999
Q ss_pred cCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023455 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (282)
Q Consensus 94 ~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la 173 (282)
+|+++|++|+|||||+||||++++||+++++.+|+||++ +|+|+++++|+|+.+.++||+.|++++ ++.+.++
T Consensus 78 ~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~-----~g~d~vit~DlHs~~~~~~f~ip~~~l--~a~~~l~ 150 (308)
T TIGR01251 78 ASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLET-----AGADRVLTVDLHSPQIQGFFDVPVDNL--YASPVLA 150 (308)
T ss_pred cCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHHH-----cCCCEEEEecCChHHhcCcCCCceecc--cCHHHHH
Confidence 999999999999999999999999999999999999996 489999999999999999999999987 6889999
Q ss_pred HHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEee-CCccE-EEeecCCCCCCeEEEEeccccchHHHHHH
Q 023455 174 QRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-GDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIEC 249 (282)
Q Consensus 174 ~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~-~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~ 249 (282)
+|+.+.. .+++++++||.|+.++|..+++ +.++.+++|.|. ..++. .....++++||+|+|||||++||+|+.++
T Consensus 151 ~~i~~~~-~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a 229 (308)
T TIGR01251 151 EYLKKKI-LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKA 229 (308)
T ss_pred HHHHhhC-CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHH
Confidence 9997752 4689999999999999999986 778999999998 33332 22346789999999999999999999999
Q ss_pred HHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 250 QKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 250 a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
++.|++.||++|+++++||+|++++.+++..+
T Consensus 230 ~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~ 261 (308)
T TIGR01251 230 AEILKSAGAKRVIAAATHGVFSGPAIERIANA 261 (308)
T ss_pred HHHHHhcCCCEEEEEEEeeecCcHHHHHHHhC
Confidence 99999999999999999999999999988754
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-52 Score=361.01 Aligned_cols=259 Identities=21% Similarity=0.250 Sum_probs=229.8
Q ss_pred CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHh
Q 023455 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYA 90 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a 90 (282)
.+.++++|+|+|+++||+.|++.|| +++++..+.+=+|+|+ +|++.++|||+||||+|+.+.+ +++||||+|+.|
T Consensus 5 a~sg~vl~s~ns~~elak~vaerlg-i~~g~~~vy~~tnret--~vei~~svrgkdvfiiqt~skdvn~~vmellim~ya 81 (354)
T KOG1503|consen 5 ASSGMVLFSGNSHPELAKMVAERLG-IELGKATVYQKTNRET--RVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYA 81 (354)
T ss_pred ccCCeEEEcCCCCHHHHHHHHHHhc-ccccceEEEecCCCce--EEEhhhhccCceEEEEEecCcccchHHHHHHHHHHH
Confidence 6789999999999999999999997 9999999999999988 7788899999999999999875 689999999999
Q ss_pred ccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHH
Q 023455 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (282)
Q Consensus 91 ~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~ 170 (282)
||.+++++|+.|+||||||+|.++.+ +.++-.|++|.|++. +|..++|++|||...++|||++||+|+ .+++
T Consensus 82 ckts~aksiigvipy~pyskqckmrk-rgsiv~klla~mmck-----aglthlitmdlhqkeiqgff~~pvdnl--rasp 153 (354)
T KOG1503|consen 82 CKTSCAKSIIGVIPYLPYSKQCKMRK-RGSIVSKLLASMMCK-----AGLTHLITMDLHQKEIQGFFSIPVDNL--RASP 153 (354)
T ss_pred HhhhhhhceEEEeecCccchhhhhhh-cccHHHHHHHHHHHh-----cccceEEeehhhhHhhcceeccccccc--ccCH
Confidence 99999999999999999999998744 567779999999985 699999999999999999999999998 7999
Q ss_pred HHHHHHhcC-CCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEee-----------CC--c---------c----EE
Q 023455 171 LLKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-----------GD--K---------R----IV 221 (282)
Q Consensus 171 ~la~~l~~~-~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~-----------~~--~---------~----i~ 221 (282)
.|.+||.+. .+++|.+||+..+|..++|.+.++ .+.+++++.+.+ .+ . . +.
T Consensus 154 fllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~ 233 (354)
T KOG1503|consen 154 FLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQIS 233 (354)
T ss_pred HHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccccCccccCchhhc
Confidence 999999774 578999999999999999999986 345666664432 11 0 0 00
Q ss_pred -----EeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 222 -----RIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 222 -----~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
....||+.||..++||||||.-.++.++++.||+.||-+||+.+|||++|.++-.++-.||
T Consensus 234 k~kppltvvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~ 299 (354)
T KOG1503|consen 234 KEKPPLTVVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESP 299 (354)
T ss_pred ccCCCeEEEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCC
Confidence 1136899999999999999999999999999999999999999999999999988876665
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=1e-37 Score=248.35 Aligned_cols=112 Identities=28% Similarity=0.449 Sum_probs=94.6
Q ss_pred eEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc--hhhHHHHHHHHhcccc
Q 023455 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (282)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~--~~lmelll~~~a~~~~ 94 (282)
|+||+|+++++||++||+.|| ++++++++++|||||+++ ++.++++|+||||+|++++| |++||||++++|||++
T Consensus 1 m~I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~v--~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~ 77 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETYV--RIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRA 77 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EEE--EESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEEE--EecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHc
Confidence 689999999999999999996 999999999999998755 55699999999999999987 7899999999999999
Q ss_pred CcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhc
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSN 132 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~ 132 (282)
||++|++|+|||||+||||+ ++|||+|++.+|++|+.
T Consensus 78 ~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 78 GAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp TBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred CCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 99999999999999999999 99999999999999986
No 19
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.90 E-value=9.2e-24 Score=179.02 Aligned_cols=102 Identities=28% Similarity=0.329 Sum_probs=77.4
Q ss_pred CCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCC----------------------c--------cE-EEeecCC
Q 023455 181 DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD----------------------K--------RI-VRIKEGN 227 (282)
Q Consensus 181 ~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~----------------------~--------~i-~~~~~~~ 227 (282)
+|+|.|||+||+|+.+||..+|+ ++.++++|++|... . +. ...+.||
T Consensus 1 dy~naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 1 DYRNAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp TGGGEEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEES-
T ss_pred CCCCCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 36789999999999999999997 56778888877421 0 00 0124799
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 228 PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
|+||+|+||||||+||+|+.++++.||++||++|++++|||+||+++.+++-++|
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~ 135 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESP 135 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSS
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999987654
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.70 E-value=1.8e-16 Score=134.57 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccc-CCCCcccccchHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhh
Q 023455 124 FTMARILSNIPTSRGGPTSLVIYDIHALQERFYF-SDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKML 202 (282)
Q Consensus 124 ~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff-~~~v~~l~~~~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a 202 (282)
..++++|.. .|++++..+++||.+.++|| +.+....+-.....+++.+.+. .+..+|++|+.||+++|..++
T Consensus 3 ~~~~~~l~~-----~ga~~~g~f~L~SG~~s~~y~d~~~l~~~p~~~~~l~~~l~~~--~~~d~Vvg~~~gGi~~A~~~a 75 (170)
T PRK13811 3 NTIAELLIS-----YKAIEFGDFTLASGAKSRYYIDIKTAITHPALLKEIAAEVAKR--YDFDVVAGVAVGGVPLAVAVS 75 (170)
T ss_pred HHHHHHHHH-----CCCEEECCEEEccCCcCCEEEeCchhccCHHHHHHHHHHHHhh--CCCCEEEecCcCcHHHHHHHH
Confidence 457888876 48899999999999998877 4322110001233445545432 345689999999999999887
Q ss_pred c--CCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 203 D--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 203 ~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
. +.|+.+++|++...+.. ....++++|++|+||||+++||+|+.++++.|+++||+-+.++|.=
T Consensus 76 ~~l~~p~~~~rK~~k~~g~~-~~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~v 141 (170)
T PRK13811 76 LAAGKPYAIIRKEAKDHGKA-GLIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVV 141 (170)
T ss_pred HHHCCCEEEEecCCCCCCCc-ceEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 5 78888888886554421 2235778999999999999999999999999999999987777543
No 21
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.61 E-value=3.8e-16 Score=138.39 Aligned_cols=152 Identities=23% Similarity=0.180 Sum_probs=102.9
Q ss_pred cceEEEEeecCCCCCcc---ccccCCCeeeHHHHHHHHhcCC------CCCCCCCEEEEEeCCchh--hhcccCCCCccc
Q 023455 96 VASFTLVLPFFPTGSFE---RMEEEGDVATAFTMARILSNIP------TSRGGPTSLVIYDIHALQ--ERFYFSDHVLPL 164 (282)
Q Consensus 96 a~~i~~viPY~~YsRqd---r~~~~g~~~sa~~~a~lL~~~~------~~~~g~d~Ii~vdlH~~~--~~gff~~~v~~l 164 (282)
+.+..++..|-+..|+- -||+ |..-.++.++++|.... .....+|.|++||+|..+ .|||
T Consensus 61 ~~~~~a~~~Y~g~~r~lI~~~Ky~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGf-------- 131 (227)
T PRK11595 61 WQRLVFVSDYAPPLSGLIHQLKFS-RRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGF-------- 131 (227)
T ss_pred hhheeeeeecccHHHHHHHHHHHC-ccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCC--------
Confidence 45678888898888864 2444 55555788888774210 001256899999999876 4788
Q ss_pred ccchHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhcCCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchH
Q 023455 165 FETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGG 244 (282)
Q Consensus 165 ~~~~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~ 244 (282)
+|+.++|+.+.+..+. + ++.+.+.|.+.+..+... -.++|..+........++++||+|+|||||+|||.
T Consensus 132 --nq~~~la~~la~~~~~--~----~~~~~l~r~~~~~~q~~l--~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~ 201 (227)
T PRK11595 132 --NQSDLLCRPLARWLGC--D----YDSEALTRTRATATQHFL--SARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGS 201 (227)
T ss_pred --CHHHHHHHHHHHHHCC--C----CcccceEEecCCCCcccC--CHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchH
Confidence 4788999998775322 1 233444444443322111 12444444321112356789999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEE
Q 023455 245 TLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 245 Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
|+.++++.|++.||++|++++.
T Consensus 202 Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 202 TVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred HHHHHHHHHHHcCCcEEEEEEE
Confidence 9999999999999999999975
No 22
>PLN02293 adenine phosphoribosyltransferase
Probab=99.58 E-value=3.5e-14 Score=122.23 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccE-------------EEeecCCC-CCCe
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRI-------------VRIKEGNP-AGCH 232 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i-------------~~~~~~~v-~gk~ 232 (282)
.+.+++++.. .+..+|++|+.+|+.++..++. +.++.+++|.|+..... .....+.+ +|++
T Consensus 51 ~~~l~~~~~~---~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~r 127 (187)
T PLN02293 51 IDLFVERYRD---MGISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGER 127 (187)
T ss_pred HHHHHHHHhh---cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCE
Confidence 4566666654 2457899999999999998875 77888889887643211 11123556 7999
Q ss_pred EEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 233 vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
|+||||+++||+|+.++++.|++.|+..+.++|+|.++..+..+++.+.|
T Consensus 128 VlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~ 177 (187)
T PLN02293 128 ALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKGREKLNGKP 177 (187)
T ss_pred EEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999886544
No 23
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.56 E-value=9.5e-15 Score=129.20 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=103.5
Q ss_pred CcceEEEEeecCCCCCcc---ccccCCCeeeHHHHHHHHhcCCCC-CCCCCEEEEEeCCchh--hhcccCCCCcccccch
Q 023455 95 FVASFTLVLPFFPTGSFE---RMEEEGDVATAFTMARILSNIPTS-RGGPTSLVIYDIHALQ--ERFYFSDHVLPLFETG 168 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqd---r~~~~g~~~sa~~~a~lL~~~~~~-~~g~d~Ii~vdlH~~~--~~gff~~~v~~l~~~~ 168 (282)
.+.+..++..|-+..|+- -||+ |+..-++.+|++|.....+ ..-+|.|++||+|..+ .+|| +|
T Consensus 64 ~~~~~~~~~~Y~~~l~~~i~~~Kf~-~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGF----------NQ 132 (225)
T COG1040 64 PFERLRSLGSYNGPLRELISQLKFQ-GDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGF----------NQ 132 (225)
T ss_pred cceeEEEEEEccHHHHHHHHHhhhC-CchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCC----------CH
Confidence 356788888888887764 2444 5666688888887652210 1247899999999876 5899 58
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhcCCCEEEEEEEeeCCcc-EEEeecCCCCC-CeEEEEeccccchHHH
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKR-IVRIKEGNPAG-CHVVIVDDLVQSGGTL 246 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~~~~~~~~k~R~~~~~-i~~~~~~~v~g-k~vlIVDDIi~TG~Tl 246 (282)
++.|++.+...++ .+. ...|.+....+. ..-.++|..+.+ .+. ..+..+. |+|+|||||+|||+|+
T Consensus 133 ~~~la~~l~~~~~--~~~-------~~~r~k~~~~q~--~l~~~~rr~nl~~aF~-~~~~~~~~~~vlLvDDV~TTGaTl 200 (225)
T COG1040 133 SELLARALARRLG--KPI-------ALRRVKDTSPQQ--GLKALERRRNLKGAFR-LKKGIEEPKNVLLVDDVYTTGATL 200 (225)
T ss_pred HHHHHHHHHHHhC--chH-------HHHHHhcccccc--ccchHHHHHhccCCee-cCCCCCCCCeEEEEecccccHHHH
Confidence 9999999987632 221 444444433211 111344544432 233 3444444 9999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEEc
Q 023455 247 IECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 247 ~~~a~~Lk~~GA~~V~v~~tH 267 (282)
.++++.|++.||++|.+++.-
T Consensus 201 ~~~~~~L~~~Ga~~v~~~~la 221 (225)
T COG1040 201 KEAAKLLREAGAKRVFVLTLA 221 (225)
T ss_pred HHHHHHHHHcCCceEEEEEEE
Confidence 999999999999999999863
No 24
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.53 E-value=8.7e-14 Score=119.24 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=78.5
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCE--EEEEEEeeCCc----cEE--EeecCCCCCCeEEEEe
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPT--VVCAKVREGDK----RIV--RIKEGNPAGCHVVIVD 237 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~--~~~~k~R~~~~----~i~--~~~~~~v~gk~vlIVD 237 (282)
....+|++|.+.++.+++++++++.||+.+|+.+++ ++++ .++++.|.... .+. .....+++||+|||||
T Consensus 25 ~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVD 104 (181)
T PRK09162 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVD 104 (181)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEc
Confidence 467788888765445668999999999999999986 4443 35666665432 111 1124579999999999
Q ss_pred ccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 238 DLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 238 DIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
||+|||.|+.++++.|++.||++|++++.+
T Consensus 105 DIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 105 DILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134 (181)
T ss_pred cccCcHHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 999999999999999999999999999765
No 25
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.52 E-value=1.1e-13 Score=115.91 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=82.1
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhcC----CCEEEEEEEeeCCc-------cEEEeecCCCCCCeEEEE
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDH----FPTVVCAKVREGDK-------RIVRIKEGNPAGCHVVIV 236 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~----~~~~~~~k~R~~~~-------~i~~~~~~~v~gk~vlIV 236 (282)
....+|++|.+.+..+++++|+..+|++.++.++.+. +.+.+++-.++.++ ++...+..+++||+||||
T Consensus 20 ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiV 99 (178)
T COG0634 20 RIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIV 99 (178)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEE
Confidence 4678999998877678999999999999999999753 34567777776553 123334679999999999
Q ss_pred eccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 237 DDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 237 DDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
|||+|||.||.++.+.|+.+||+++.+++
T Consensus 100 eDIiDsG~TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 100 EDIIDSGLTLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred ecccccChhHHHHHHHHHhCCCCeEEEEE
Confidence 99999999999999999999999999995
No 26
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.52 E-value=7.5e-14 Score=118.04 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=76.7
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCC--EEEEEEE--eeC---CccEE--EeecCCCCCCeEEEE
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFP--TVVCAKV--REG---DKRIV--RIKEGNPAGCHVVIV 236 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~--~~~~~k~--R~~---~~~i~--~~~~~~v~gk~vlIV 236 (282)
....||+.|.+.++.+++++++|+.||+.+|+.+++ +.+ +.++.-. |.. ..... .....+++||+|+||
T Consensus 11 ~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vliv 90 (166)
T TIGR01203 11 RIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIV 90 (166)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEE
Confidence 467788888765444678999999999999999986 333 3333322 211 11121 123568999999999
Q ss_pred eccccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 023455 237 DDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 237 DDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
|||+|||+|+.++++.|++.||++|+++|.+--
T Consensus 91 DDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k 123 (166)
T TIGR01203 91 EDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDK 123 (166)
T ss_pred eeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 999999999999999999999999999986643
No 27
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=2.3e-13 Score=131.53 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=75.0
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCE--EEEEEEeeC-----Cc------cE-EEe-ecC-CCCCCeEEEEeccccchH
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPT--VVCAKVREG-----DK------RI-VRI-KEG-NPAGCHVVIVDDLVQSGG 244 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~--~~~~k~R~~-----~~------~i-~~~-~~~-~v~gk~vlIVDDIi~TG~ 244 (282)
.+.++..||. +..+|..+++ ++|+ .+.+|++.. .. +. +.. ... .++||+|+||||+++||+
T Consensus 276 ~d~Vv~vPd~-g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~ 354 (445)
T PRK08525 276 ADFVVPVPDS-GVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGT 354 (445)
T ss_pred CCeEEECCch-HHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHH
Confidence 3578888885 5888888876 5665 455554321 11 11 111 123 489999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCC
Q 023455 245 TLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 245 Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
|+.++++.|+++||++|+++++||+|+.++..++-.+
T Consensus 355 Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~ 391 (445)
T PRK08525 355 TSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTP 391 (445)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCC
Confidence 9999999999999999999999999999999887443
No 28
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.48 E-value=3.7e-13 Score=114.97 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=78.4
Q ss_pred hHHHHHHHHhcCCC--CCCceEeecCCchhHHHHhhhc--CCC--EEEEEEEeeCCc-----cE--EEeecCCCCCCeEE
Q 023455 168 GIPLLKQRLHQLPD--ANNIVIAFPDDGAWKRFHKMLD--HFP--TVVCAKVREGDK-----RI--VRIKEGNPAGCHVV 234 (282)
Q Consensus 168 ~~~~la~~l~~~~~--~~~~viv~pd~g~~~ra~~~a~--~~~--~~~~~k~R~~~~-----~i--~~~~~~~v~gk~vl 234 (282)
....+|.+|.+.+. ..++++++++.||+.+|+.+++ +.+ +.+++..|+.++ ++ ......+++||+||
T Consensus 17 ~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VL 96 (178)
T PRK15423 17 RIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVL 96 (178)
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEE
Confidence 46678888876543 2468999999999999999986 344 557777777521 12 11224589999999
Q ss_pred EEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 235 IVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 235 IVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
|||||+|||.|+.++.+.|++.||++|.+++.+
T Consensus 97 lVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~ 129 (178)
T PRK15423 97 IVEDIIDSGNTLSKVREILSLREPKSLAICTLL 129 (178)
T ss_pred EEeeecCchHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 999999999999999999999999999998743
No 29
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.47 E-value=3.6e-14 Score=122.43 Aligned_cols=145 Identities=22% Similarity=0.181 Sum_probs=90.6
Q ss_pred EEEeecCCCCCcc---ccccCCCeeeHHHHHHHHhcCCC-C-CCCCCEEEEEeCCchh--hhcccCCCCcccccchHHHH
Q 023455 100 TLVLPFFPTGSFE---RMEEEGDVATAFTMARILSNIPT-S-RGGPTSLVIYDIHALQ--ERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 100 ~~viPY~~YsRqd---r~~~~g~~~sa~~~a~lL~~~~~-~-~~g~d~Ii~vdlH~~~--~~gff~~~v~~l~~~~~~~l 172 (282)
.++..|-+..|+- -||+ |+.--++.+|++|..... . ...+|.|++||+|..+ .||| +++.+|
T Consensus 36 ~~~~~Y~~~~~~li~~~K~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGf----------nq~~~l 104 (190)
T TIGR00201 36 VSVYTYNEPLKELISRFKFR-GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGF----------NQADLL 104 (190)
T ss_pred EEEEECchHHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCC----------CHHHHH
Confidence 5556776666653 2333 455557778877753100 0 1135889999999876 5898 478899
Q ss_pred HHHHhcCCCCCCceEeecCCchhHHHHhhhcCCCEEEEEEEeeCCc-cEEEeecCCCCCCeEEEEeccccchHHHHHHHH
Q 023455 173 KQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDK-RIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQK 251 (282)
Q Consensus 173 a~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~~~~~~~~k~R~~~~-~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~ 251 (282)
|+.+.+..+. . ...+.+.+. ..+... -.++|..+. ..+.....+++||+|+|||||+|||.|+.++++
T Consensus 105 a~~l~~~~~~----~----~~~l~r~~~-~~Q~~l--~~~~R~~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~ 173 (190)
T TIGR00201 105 AQCLSRWLFN----Y----HNIVIRLNN-ETQSKL--KATLRFLNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIAR 173 (190)
T ss_pred HHHHHHHhCC----C----cceEEEecc-cccccC--CHHHHHHHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHH
Confidence 9999764211 0 011212111 111000 022333332 223322225899999999999999999999999
Q ss_pred HHHHCCCCEEEEEEE
Q 023455 252 VLAAHGAAKKTWRML 266 (282)
Q Consensus 252 ~Lk~~GA~~V~v~~t 266 (282)
.|+++||.+|++++.
T Consensus 174 ~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 174 LLLELGAASVQVWTL 188 (190)
T ss_pred HHHHcCCCEEEEEEE
Confidence 999999999999975
No 30
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.45 E-value=6e-13 Score=106.15 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=74.0
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEE----------eeCCcc--EEEeecCCCCCCeE
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKV----------REGDKR--IVRIKEGNPAGCHV 233 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~----------R~~~~~--i~~~~~~~v~gk~v 233 (282)
....++++|.+. +.+.+.++++..||+..+..++. +.|+....+. +..... ........++||+|
T Consensus 13 ~~~~la~~i~~~-~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~v 91 (125)
T PF00156_consen 13 LAERLAEQIKES-GFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRV 91 (125)
T ss_dssp HHHHHHHHHHHH-TTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEE
T ss_pred HHHHHHHHHHHh-CCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeE
Confidence 456788888775 34556699999999999998875 4444333221 111111 12233578899999
Q ss_pred EEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 234 VIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 234 lIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
+||||++|||+|+.++++.|++.|+++|.+++.|
T Consensus 92 liVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 92 LIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred EEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 9999999999999999999999999999999875
No 31
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.43 E-value=9.9e-13 Score=113.44 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=76.9
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CC---CE--EEEEEEeeCCc-----cE--EE-eecCCCCCCe
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HF---PT--VVCAKVREGDK-----RI--VR-IKEGNPAGCH 232 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~---~~--~~~~k~R~~~~-----~i--~~-~~~~~v~gk~ 232 (282)
....||+.|.+.+...+++++++..||+.+++.+++ +. ++ .+++.++..+. ++ .. ....+++||+
T Consensus 20 ~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~ 99 (189)
T PLN02238 20 RVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKH 99 (189)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCE
Confidence 456688888775544668999999999999999886 33 43 45666655421 11 11 2235799999
Q ss_pred EEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 233 vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
|+|||||+|||.|+.++++.|++.||++|.++|.
T Consensus 100 VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL 133 (189)
T PLN02238 100 VLLVEDIVDTGNTLSALVAHLEAKGAASVSVCAL 133 (189)
T ss_pred EEEEecccchHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999999999999999999999999999973
No 32
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=110.47 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCCC-CCCeEEEEeccccchHH
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNP-AGCHVVIVDDLVQSGGT 245 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v-~gk~vlIVDDIi~TG~T 245 (282)
...+++++.+... +.++|++|+.||+++|..++. +.|+.+.+|++...+.. ....+++ +|++|+||||+++||+|
T Consensus 45 ~~~i~~~l~~~i~-~~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~-~~~~g~~~~g~~VlIVDDvitTG~T 122 (176)
T PRK13812 45 LRLIAEAFADRID-EDTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGTG-NRIEGRLDEGEEVVVLEDIATTGQS 122 (176)
T ss_pred HHHHHHHHHHHhc-cCCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCCCC-CeEEecCCCcCEEEEEEEeeCCCHH
Confidence 5667777765432 337999999999999999875 78999999987654321 1124566 89999999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEEE
Q 023455 246 LIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 246 l~~~a~~Lk~~GA~~V~v~~t 266 (282)
+.++++.|+++||+.+.++|.
T Consensus 123 l~~~~~~l~~~Ga~vv~~~vl 143 (176)
T PRK13812 123 AVDAVEALREAGATVNRVLVV 143 (176)
T ss_pred HHHHHHHHHHCCCeEEEEEEE
Confidence 999999999999998877763
No 33
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.40 E-value=2.5e-12 Score=109.51 Aligned_cols=95 Identities=20% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccE------------EEeec--CCCCCCeEEEEeccccchHHH
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRI------------VRIKE--GNPAGCHVVIVDDLVQSGGTL 246 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i------------~~~~~--~~v~gk~vlIVDDIi~TG~Tl 246 (282)
+.++|++++.||+.++..++. ++|+.+++|.++..... ...+. ..++|++|+|||||+|||+|+
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl 130 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTL 130 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHH
Confidence 568999999999999998885 77888877765432110 01112 237999999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEEccccCCchhhh
Q 023455 247 IECQKVLAAHGAAKKTWRMLLPTFGSRIRAR 277 (282)
Q Consensus 247 ~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~ 277 (282)
.++++.|+++||+.|.++|.+..-.++..++
T Consensus 131 ~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~ 161 (175)
T PRK02304 131 EAAIKLLERLGAEVVGAAFVIELPDLGGREK 161 (175)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEcccccchhh
Confidence 9999999999999999999877654333343
No 34
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.37 E-value=2.9e-12 Score=109.26 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=74.3
Q ss_pred hHHHHHHHHhcCC-CCCCceEeecCCchhHHHHhhhcC--------CCEEEEEEEeeCC-----c--cEE--EeecCCCC
Q 023455 168 GIPLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLDH--------FPTVVCAKVREGD-----K--RIV--RIKEGNPA 229 (282)
Q Consensus 168 ~~~~la~~l~~~~-~~~~~viv~pd~g~~~ra~~~a~~--------~~~~~~~k~R~~~-----~--~i~--~~~~~~v~ 229 (282)
....||+++.+.+ +.+++++++++.||+.++..+++. +++.+++..+..+ . ... .....+++
T Consensus 15 ~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~ 94 (176)
T PRK05205 15 ALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIE 94 (176)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCC
Confidence 4567888887643 235789999999999999888742 2345554443321 1 111 12345799
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCC-CCEEEEEEEc
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHG-AAKKTWRMLL 267 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~G-A~~V~v~~tH 267 (282)
||+|||||||+|||+|+.++++.|++.| +++|.+++..
T Consensus 95 gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 95 GKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 9999999999999999999999999999 7899888764
No 35
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.37 E-value=5e-12 Score=110.01 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCc---cE---EEeecCCCCCCeEEEEeccc
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK---RI---VRIKEGNPAGCHVVIVDDLV 240 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~---~i---~~~~~~~v~gk~vlIVDDIi 240 (282)
+..+++.+... +.+..+|+++..||+++|..++. +.++..+++.+...+ .. +....++++||+|+||||++
T Consensus 72 ~~~la~~i~~~-~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVi 150 (200)
T PRK02277 72 ASAMADMLEKE-DEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVI 150 (200)
T ss_pred HHHHHHHHHhc-CCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeecc
Confidence 45566665332 24557899999999999999986 667777765553211 11 11123568999999999999
Q ss_pred cchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 241 QSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 241 ~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
|||+|+.++++.|+++||+.+.++|..
T Consensus 151 tTG~Tl~~ai~~l~~~Ga~~v~v~vlv 177 (200)
T PRK02277 151 TSGTTMKETIEYLKEHGGKPVAVVVLI 177 (200)
T ss_pred CchHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 999999999999999999999998843
No 36
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.35 E-value=1.1e-11 Score=106.07 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCC--cc----E---------EEee----cCCC
Q 023455 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--KR----I---------VRIK----EGNP 228 (282)
Q Consensus 170 ~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~--~~----i---------~~~~----~~~v 228 (282)
..+++.+.+....+..+|++++.||+.++..++. +.++...+|.+... .. . .... ..++
T Consensus 39 ~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (178)
T PRK07322 39 EAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKL 118 (178)
T ss_pred HHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCcccccc
Confidence 3444444433222456899999999999998885 67877776655421 00 0 0001 1247
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
+||+|+||||+++||+|+.++++.|+++||+.|.+++.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v 156 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAI 156 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 89999999999999999999999999999999988764
No 37
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.33 E-value=1.3e-11 Score=104.65 Aligned_cols=107 Identities=23% Similarity=0.195 Sum_probs=76.1
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCc-------------cEEEee-cCCCCCC
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-------------RIVRIK-EGNPAGC 231 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~-------------~i~~~~-~~~v~gk 231 (282)
....+++.+.+ .+..+|++++.+|+..+..++. +.++..++|.+.... +.+... ....+||
T Consensus 34 ~~~~la~~i~~---~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 110 (169)
T TIGR01090 34 LIDLLVERYKD---ANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQ 110 (169)
T ss_pred HHHHHHHHhcc---CCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcC
Confidence 34556666644 2457999999999999998875 667766665443111 111111 2246999
Q ss_pred eEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhh
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRAR 277 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~ 277 (282)
+|+|||||+|||+|+.++++.|+++||+.|.+++.-..=..+..++
T Consensus 111 ~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~ 156 (169)
T TIGR01090 111 RVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAK 156 (169)
T ss_pred EEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHH
Confidence 9999999999999999999999999999998887655433344443
No 38
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.32 E-value=8.8e-12 Score=110.96 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhcCC-----------C--E---EEEEEEeeCCc----cE--EEeec
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHF-----------P--T---VVCAKVREGDK----RI--VRIKE 225 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~~-----------~--~---~~~~k~R~~~~----~i--~~~~~ 225 (282)
....||.+|.+.++.+++++++...||+.+++++.+.+ + . .+++-.+..+. ++ .....
T Consensus 66 rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~ 145 (241)
T PTZ00149 66 RVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDL 145 (241)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccc
Confidence 56778889887666678999999999999998875311 1 2 44444443331 22 22224
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
.+++||+|||||||+|||.|+.++++.|++.|+++|.++|.
T Consensus 146 ~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L 186 (241)
T PTZ00149 146 SCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATL 186 (241)
T ss_pred cccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 57899999999999999999999999999999999999985
No 39
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.32 E-value=2.1e-11 Score=105.07 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=72.4
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeec-CCCCCCeEEEEeccccchH
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKE-GNPAGCHVVIVDDLVQSGG 244 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~-~~v~gk~vlIVDDIi~TG~ 244 (282)
.+..+++++... +.+.++|++++.||+.+|..++. ++++.+.+|.+ . ....... ...+|++|+|||||+|||+
T Consensus 44 ~~~~La~~i~~~-~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~--~-~~~~~~~~~l~~G~~VLIVDDIi~TG~ 119 (187)
T TIGR01367 44 LGGELAQKILDY-GLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREG--G-GMKLRRGFAVKPGEKFVAVEDVVTTGG 119 (187)
T ss_pred HHHHHHHHHHHh-CCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeC--C-cEEEeecccCCCCCEEEEEEeeecchH
Confidence 456677777542 34678999999999999999986 56766565544 2 1111111 1248999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEc
Q 023455 245 TLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 245 Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
|+.++++.|+++||+.|.+++.-
T Consensus 120 Tl~~a~~~l~~~Ga~vv~~~vli 142 (187)
T TIGR01367 120 SLLEAIRAIEGQGGQVVGLACII 142 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEEEE
Confidence 99999999999999999888754
No 40
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.32 E-value=1.2e-11 Score=108.43 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred CCceEeecCCchhHHHHhhhcC---CCEEEEEEEeeCCc-c-E--EEeecCCCCCCeEEEEeccccchHHHHHHHHHHHH
Q 023455 183 NNIVIAFPDDGAWKRFHKMLDH---FPTVVCAKVREGDK-R-I--VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAA 255 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~~---~~~~~~~k~R~~~~-~-i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~ 255 (282)
+++++|+++.||..++..+++. .++.++..+|+..+ . . ...+..+++||+|+|||||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 4689999999999999988753 45666777786433 1 1 12245689999999999999999999999999999
Q ss_pred CCCCEEEEEEEccccCCchhhhhcCC
Q 023455 256 HGAAKKTWRMLLPTFGSRIRARSLSK 281 (282)
Q Consensus 256 ~GA~~V~v~~tH~~fs~~~~~~~~~~ 281 (282)
.|+++|.++|+ ++++.+++|+...
T Consensus 150 ~G~~~I~~~~l--l~~~~gl~~l~~~ 173 (209)
T PRK00129 150 RGAKNIKVLCL--VAAPEGIKALEEA 173 (209)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHH
Confidence 99999999998 8899999988653
No 41
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.31 E-value=1.6e-11 Score=107.40 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=75.5
Q ss_pred hHHHHHHHHhcCCC------CCCceEeecCCchhHHHHhhhcC-----CC--EEEEEEEeeCCc-----cE--EEeecCC
Q 023455 168 GIPLLKQRLHQLPD------ANNIVIAFPDDGAWKRFHKMLDH-----FP--TVVCAKVREGDK-----RI--VRIKEGN 227 (282)
Q Consensus 168 ~~~~la~~l~~~~~------~~~~viv~pd~g~~~ra~~~a~~-----~~--~~~~~k~R~~~~-----~i--~~~~~~~ 227 (282)
....||++|.+.+. .+++++++...||+.++..+.+. .+ +.+++-.++.++ .+ ......+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 56778888877543 23678999999999999988642 33 445554444321 11 1123458
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 228 PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
++||+|||||||+|||.|+.++.+.|++.||++|.+++.
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL 154 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVL 154 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 999999999999999999999999999999999999974
No 42
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=107.29 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=74.6
Q ss_pred HHHHHHHhcCC-CCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCcc--EEEeecC-CCCCCeEEEEeccccch
Q 023455 170 PLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKR--IVRIKEG-NPAGCHVVIVDDLVQSG 243 (282)
Q Consensus 170 ~~la~~l~~~~-~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~--i~~~~~~-~v~gk~vlIVDDIi~TG 243 (282)
..+++.+.+.+ +.+.++|++|+.+|++++..++. +.|+.+.+|.++..+. .+.. .+ ..+|++|+||||++|||
T Consensus 53 ~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~~~~~-~g~~~~g~~VlIVDDViTTG 131 (206)
T PRK13809 53 QTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKV-EGLFTPGQTCLVINDMVSSG 131 (206)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCcCEEEE-ccccCCCCEEEEEEeccccC
Confidence 34444444432 23568899999999999999885 6788888887765542 2222 33 35899999999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 244 GTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 244 ~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
+|+.++++.|+++|+..+.++|.--
T Consensus 132 ~Ti~~a~~~L~~~G~~vv~v~vlvd 156 (206)
T PRK13809 132 KSIIETAVALEEEGLVVREALVFLD 156 (206)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEE
Confidence 9999999999999999877776543
No 43
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.30 E-value=2.4e-11 Score=105.81 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchHHH
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTL 246 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl 246 (282)
...+++.+.+.. .+..+|++++.||+.+|..++. +.|+.+.+|.+...+..........+|++|+||||+++||+|+
T Consensus 51 ~~~la~~i~~~~-~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~~~~~~~~~~g~~VliVDDvi~tG~Tl 129 (202)
T PRK00455 51 GRFLAEAIKDSG-IEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIEGRRLFGKRVLVVEDVITTGGSV 129 (202)
T ss_pred HHHHHHHHHhcC-CCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCCceEEccCCCCCEEEEEecccCCcHHH
Confidence 455666665531 2456899999999999999986 6788888776543321111112346899999999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEEEccc
Q 023455 247 IECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 247 ~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
.++++.|++.||+.+.++|....
T Consensus 130 ~~~~~~l~~~Ga~~v~~~vlv~~ 152 (202)
T PRK00455 130 LEAVEAIRAAGAEVVGVAVIVDR 152 (202)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEC
Confidence 99999999999999988876654
No 44
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.28 E-value=2.8e-11 Score=102.96 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCC-----EEEEEEEeeCCccEEEeecCC-CCCCeEEEEeccc
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFP-----TVVCAKVREGDKRIVRIKEGN-PAGCHVVIVDDLV 240 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~-----~~~~~k~R~~~~~i~~~~~~~-v~gk~vlIVDDIi 240 (282)
...+++.+... .+..+|++|+.||+.+|..++. +.+ +.+.+|+++..+... ...+. .+|++|+||||++
T Consensus 42 ~~~~~~~~~~~--~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~-~~~g~~~~g~~VlIVDDvi 118 (173)
T TIGR00336 42 ARYAAAIIKSH--LEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGG-NIEGELLEGDKVVVVEDVI 118 (173)
T ss_pred HHHHHHHHHhc--CCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCC-ceecCCCCCCEEEEEeccc
Confidence 34445544432 3568999999999999998875 556 777777765433111 12343 4899999999999
Q ss_pred cchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 241 QSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 241 ~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
+||+|+.++++.|+++||+.+.++|.=
T Consensus 119 ~TG~Tl~~a~~~l~~~Ga~v~~~~vlv 145 (173)
T TIGR00336 119 TTGTSILEAVEIIQAAGGQVAGVIIAV 145 (173)
T ss_pred cChHHHHHHHHHHHHcCCeEEEEEEEE
Confidence 999999999999999999988777643
No 45
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.28 E-value=2.3e-11 Score=104.78 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCc------------cEE--EeecCCCCCCeEE
Q 023455 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK------------RIV--RIKEGNPAGCHVV 234 (282)
Q Consensus 171 ~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~------------~i~--~~~~~~v~gk~vl 234 (282)
.+++.+.+..+.+..+|++|+.||+.+|..++. +.|+.+++|.|.... ... ....+..+|++|+
T Consensus 39 ~~~~~l~~~~~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVl 118 (187)
T PRK12560 39 ETAKEIIKYIDKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVA 118 (187)
T ss_pred HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEE
Confidence 334444333234567999999999999998875 678888887664321 011 1113456899999
Q ss_pred EEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 235 IVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 235 IVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
||||+++||+|+.++++.++++||..+.++|.
T Consensus 119 IVDDvitTG~T~~~ai~ll~~aGa~vv~v~~v 150 (187)
T PRK12560 119 IIDDTLSTGGTVIALIKAIENSGGIVSDVICV 150 (187)
T ss_pred EEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 99999999999999999999999998888764
No 46
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.25 E-value=4.2e-11 Score=116.56 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=75.6
Q ss_pred HHHHHHhcCCCCC-CceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeC--------------CccEE-EeecCCCCCC
Q 023455 171 LLKQRLHQLPDAN-NIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREG--------------DKRIV-RIKEGNPAGC 231 (282)
Q Consensus 171 ~la~~l~~~~~~~-~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~--------------~~~i~-~~~~~~v~gk 231 (282)
.+++.|.+....+ +.|+..||. +...|..+++ +.|+.. +.+.|.. ..+.. .....+++||
T Consensus 276 ~~G~~La~~~~~~~D~Vv~vPds-g~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk 354 (469)
T PRK05793 276 RAGRQLYKEYPVDADIVIGVPDS-GIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGK 354 (469)
T ss_pred HHHHHHHHhcCCCCCEEEEcCcc-HHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCC
Confidence 4555554432222 456666775 5788888875 677643 2333321 11111 1123578999
Q ss_pred eEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhh
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARS 278 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~ 278 (282)
+|+||||+|+||+|+.++++.|+++||++|+++++||.|..++....
T Consensus 355 ~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gi 401 (469)
T PRK05793 355 RVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGI 401 (469)
T ss_pred EEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhc
Confidence 99999999999999999999999999999999999999999887654
No 47
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.19 E-value=1.2e-10 Score=101.93 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=78.1
Q ss_pred CCceEeecCCchhHHHHhhhcC---CCEEEEEEEeeCCc-cE---EEeecCCCCCCeEEEEeccccchHHHHHHHHHHHH
Q 023455 183 NNIVIAFPDDGAWKRFHKMLDH---FPTVVCAKVREGDK-RI---VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAA 255 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~~---~~~~~~~k~R~~~~-~i---~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~ 255 (282)
+++++|+...||..++..+.+- .++..+..+|+... +. ...+..+++||+|+|||||++||+|+..+.+.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4688999999999999988752 45666777776433 11 12235689999999999999999999999999999
Q ss_pred CCCCEEEEEEEccccCCchhhhhcC
Q 023455 256 HGAAKKTWRMLLPTFGSRIRARSLS 280 (282)
Q Consensus 256 ~GA~~V~v~~tH~~fs~~~~~~~~~ 280 (282)
.||++|.++|+ ++++.+.+++..
T Consensus 148 ~G~~~I~v~~l--l~~~~gl~~l~~ 170 (207)
T TIGR01091 148 RGAKKIKVLSI--VAAPEGIEAVEK 170 (207)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHH
Confidence 99999999988 888888888753
No 48
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.7e-10 Score=96.32 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEE--EEEeeCCc----cEEEeecCCCCCCeEEEEeccc
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVC--AKVREGDK----RIVRIKEGNPAGCHVVIVDDLV 240 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~--~k~R~~~~----~i~~~~~~~v~gk~vlIVDDIi 240 (282)
+..+++.+.+..+.+-+++|+....|++.|.-+|. +.++.++ +|.|...+ ..++...+.|+||+|+||||++
T Consensus 72 s~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvi 151 (203)
T COG0856 72 SEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVI 151 (203)
T ss_pred HHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEeccc
Confidence 45677743332245668999999999999999885 6666665 35554432 2344456889999999999999
Q ss_pred cchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 241 QSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 241 ~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
|||.|+.++++.|++.|++.+.|.+.
T Consensus 152 ttG~Ti~E~Ie~lke~g~kpv~v~VL 177 (203)
T COG0856 152 TTGSTIKETIEQLKEEGGKPVLVVVL 177 (203)
T ss_pred ccChhHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999998877754
No 49
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.13 E-value=4.9e-10 Score=96.45 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCC-CCCCeEEEEeccccchHHHHHHHHHHHHCCCC
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGN-PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAA 259 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~-v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~ 259 (282)
+...|+++..+|++.|..++. +.|+.+.+|..+..+.- ....+. .+|++|+||||+++||+|+.++++.++++|+.
T Consensus 73 ~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g~~-~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~ 151 (187)
T PRK13810 73 DVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYGTG-SRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151 (187)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccCCC-ceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCE
Confidence 457899999999999988874 78998888875543311 112343 47999999999999999999999999999998
Q ss_pred EEEEEEEc
Q 023455 260 KKTWRMLL 267 (282)
Q Consensus 260 ~V~v~~tH 267 (282)
.+.+++.=
T Consensus 152 V~~v~vlv 159 (187)
T PRK13810 152 IKYVITVV 159 (187)
T ss_pred EEEEEEEE
Confidence 87777643
No 50
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.07 E-value=1.3e-09 Score=94.05 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCC--ccEE---------------EeecCC-CCCCeEEEEeccccc
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--KRIV---------------RIKEGN-PAGCHVVIVDDLVQS 242 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~--~~i~---------------~~~~~~-v~gk~vlIVDDIi~T 242 (282)
+..+|++++.+|+..|..+|. +.|+.+++|..+.. .... ...... -+|++|+||||+++|
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaT 129 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLAN 129 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhc
Confidence 456899999999999998875 78999998876542 1100 011122 379999999999999
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 243 GGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 243 G~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
|+|+.++++.++++||.-+.+++.
T Consensus 130 GgT~~a~~~lv~~aGa~vvgv~~l 153 (189)
T PRK09219 130 GQAALGLIDIIEQAGAKVAGIGIV 153 (189)
T ss_pred ChHHHHHHHHHHHCCCEEEEEEEE
Confidence 999999999999999998877763
No 51
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.06 E-value=1.5e-09 Score=93.84 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=71.4
Q ss_pred HHHHHHHhcCC-CCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCc-----cE----------EE-eecC-CC-
Q 023455 170 PLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-----RI----------VR-IKEG-NP- 228 (282)
Q Consensus 170 ~~la~~l~~~~-~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~-----~i----------~~-~~~~-~v- 228 (282)
..+++.+.+.+ +.+..+|++++.+|+..+..+|. +.|+.+++|..+... .. .. ...+ .+
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~ 115 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLS 115 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCC
Confidence 44444444432 23456899999999999998875 789999988754321 10 00 1122 23
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
+|++|+||||+++||+|+.++++.++++||.-+.++|.
T Consensus 116 ~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~l 153 (191)
T TIGR01744 116 DQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIV 153 (191)
T ss_pred CcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEE
Confidence 89999999999999999999999999999998887764
No 52
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.06 E-value=1.3e-09 Score=106.39 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEE--EEEEEeeCC------------ccEEE-e--ecCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTV--VCAKVREGD------------KRIVR-I--KEGNPA 229 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~--~~~k~R~~~------------~~i~~-~--~~~~v~ 229 (282)
...+++.|.+....+..++++.-.++...|..+++ ++|+. ++ |.|... ..+.. . ....++
T Consensus 281 R~~~g~~La~~~~~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~li-r~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~ 359 (479)
T PRK09123 281 RKNIGRELARESPVDADVVVPVPDSGVPAAIGYAQESGIPFELGII-RNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIE 359 (479)
T ss_pred HHHHHHHHHHhCCCCCeEEEEcCccHHHHHHHHHHhcCCCeeheEE-EEeecCccccccccccccccEEEEecccccccC
Confidence 34566666654333455777777788888888875 56654 33 334321 11111 1 123479
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE-----EccccCC---chhhhhc
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM-----LLPTFGS---RIRARSL 279 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~-----tH~~fs~---~~~~~~~ 279 (282)
||+|+||||+++||.|+.++++.|+++||++|++.+ +|+.|.+ .+.++|.
T Consensus 360 gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~ 417 (479)
T PRK09123 360 GKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLL 417 (479)
T ss_pred CCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHH
Confidence 999999999999999999999999999999999999 9999998 7766654
No 53
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.05 E-value=3e-09 Score=92.08 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCceEeecCCchhHHHHhhhcCC---C-EEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCC
Q 023455 183 NNIVIAFPDDGAWKRFHKMLDHF---P-TVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGA 258 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~~~---~-~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA 258 (282)
+..+|++|..||++.+..++..+ + +.+.+|+-+..+.-........+|++|+||||++|||+++.++++.|+++|+
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~ 140 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGA 140 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHhccCCcEEEEeceeccCCCcceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCC
Confidence 56799999999999999887644 3 5566666444332111123345899999999999999999999999999999
Q ss_pred CEEEEEE
Q 023455 259 AKKTWRM 265 (282)
Q Consensus 259 ~~V~v~~ 265 (282)
..+.++|
T Consensus 141 ~V~gv~~ 147 (201)
T COG0461 141 EVVGVAV 147 (201)
T ss_pred eEEEEEE
Confidence 9776665
No 54
>PLN02440 amidophosphoribosyltransferase
Probab=99.02 E-value=2.3e-09 Score=104.67 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC------------ccEE-E--eecCCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------------KRIV-R--IKEGNPAG 230 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~------------~~i~-~--~~~~~v~g 230 (282)
-..+++.|.+....+.++|++.-.++...|..+++ ++|+.. +.|.|... ..+. . .....++|
T Consensus 261 r~~~g~~La~~~~~~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~g 340 (479)
T PLN02440 261 RLEFGEILATEIPVDCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEG 340 (479)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeecccccccC
Confidence 34556666554322344556555567888888875 556531 22333321 1111 1 11256899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
|+|+||||++|||.|+.++++.|+++||++|++++.-+
T Consensus 341 k~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p 378 (479)
T PLN02440 341 KRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASP 378 (479)
T ss_pred ceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 99999999999999999999999999999999998753
No 55
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.02 E-value=2.6e-09 Score=95.31 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCC-CCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCc-------------cEEEe-e-cC-CCCC
Q 023455 170 PLLKQRLHQLPD-ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-------------RIVRI-K-EG-NPAG 230 (282)
Q Consensus 170 ~~la~~l~~~~~-~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~-------------~i~~~-~-~~-~v~g 230 (282)
..+++.+.+.+. .+.++|+++..+|+..|..++. +.|+.+++|.+.... .+... + .. -.+|
T Consensus 97 ~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 97 RLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 344545544332 2457899999999999999885 788888877653221 11111 1 12 3589
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
++|+||||+++||+|+..+++.++++||+.+.++|.=
T Consensus 177 ~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv 213 (238)
T PRK08558 177 DRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLI 213 (238)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 9999999999999999999999999999988777643
No 56
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.00 E-value=2.2e-09 Score=104.71 Aligned_cols=108 Identities=18% Similarity=0.121 Sum_probs=74.1
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC--------------cc-EEEeecCCCC
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD--------------KR-IVRIKEGNPA 229 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~--------------~~-i~~~~~~~v~ 229 (282)
.-..++++|.+....+.++|++.-..+...|..+++ ++|+.. +-|.|... .+ .+......++
T Consensus 270 ~R~~lg~~La~~~~~~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 270 ARKRMGKRLAQEFPHDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 345677777664322334555544566667777775 666521 22222211 11 1122245789
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchh
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIR 275 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~ 275 (282)
||+|+||||++|||.|+.++++.|+++||++|.++++|+.|.....
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ 395 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCF 395 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChh
Confidence 9999999999999999999999999999999999999999877653
No 57
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.94 E-value=9.1e-09 Score=88.05 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCcc-------------EEEeecCCC-CCCe
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKR-------------IVRIKEGNP-AGCH 232 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~-------------i~~~~~~~v-~gk~ 232 (282)
...+++.+... +...|+++..+|+..+..+|. +.|++.++|.++.... ........+ +|++
T Consensus 42 i~~~~~~~~~~---~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~r 118 (179)
T COG0503 42 IDELAERYKDD---GIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDR 118 (179)
T ss_pred HHHHHHHhccc---CCCEEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCE
Confidence 34555555542 457899999999999999985 7889989887764321 011112222 6999
Q ss_pred EEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 233 vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
|+||||+++||+|+..+.+++.++|+.-+.+.+.=
T Consensus 119 VlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~i 153 (179)
T COG0503 119 VLIVDDLLATGGTALALIELLEQAGAEVVGAAFVI 153 (179)
T ss_pred EEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEE
Confidence 99999999999999999999999999988777643
No 58
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=6.1e-09 Score=100.64 Aligned_cols=100 Identities=25% Similarity=0.276 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCC-CCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC----------ccE-EE--eecCCCCCC
Q 023455 169 IPLLKQRLHQLPDA-NNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD----------KRI-VR--IKEGNPAGC 231 (282)
Q Consensus 169 ~~~la~~l~~~~~~-~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~----------~~i-~~--~~~~~v~gk 231 (282)
-..+++.|.+.... .+.|+..||.|. ..|..+++ +.|+.. +.|.|... ..+ .. .....++||
T Consensus 257 R~~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk 335 (442)
T PRK08341 257 RYRMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGK 335 (442)
T ss_pred HHHHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCC
Confidence 34566667654322 345677788766 57777765 667643 55655321 111 11 124568999
Q ss_pred eEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
+|+||||+++||+|+.++++.|+++||++|++.++-+-
T Consensus 336 ~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp 373 (442)
T PRK08341 336 RVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPP 373 (442)
T ss_pred EEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 99999999999999999999999999999999876554
No 59
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.91 E-value=7.9e-09 Score=100.43 Aligned_cols=83 Identities=24% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCCC-CCCeEEEEeccccchHHHHHHHHHHHHCCCC
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNP-AGCHVVIVDDLVQSGGTLIECQKVLAAHGAA 259 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v-~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~ 259 (282)
+...|++|..||++.+..++. +.|+.+.+|+.+..+.. ....+.+ +|++|+||||++|||+|+.++++.|++.|++
T Consensus 344 ~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~-~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~ 422 (477)
T PRK05500 344 TFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTR-RLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLN 422 (477)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCCC-ceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 446899999999999998875 78888888876544421 1234544 8999999999999999999999999999998
Q ss_pred EEEEEEE
Q 023455 260 KKTWRML 266 (282)
Q Consensus 260 ~V~v~~t 266 (282)
.+.++|.
T Consensus 423 V~~v~vl 429 (477)
T PRK05500 423 VRDIVVF 429 (477)
T ss_pred EEEEEEE
Confidence 8766654
No 60
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=98.90 E-value=1.4e-08 Score=91.73 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=66.4
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeC-Cc-------------cEEEe-e-cCC-CCCCeEEEEeccccch
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREG-DK-------------RIVRI-K-EGN-PAGCHVVIVDDLVQSG 243 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~-~~-------------~i~~~-~-~~~-v~gk~vlIVDDIi~TG 243 (282)
+..+|+++..+|++.|..+|. +.|+.+++|..+. .+ .+..+ + ... .+|++|+||||+++||
T Consensus 128 ~iD~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 128 EIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred CCCEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccC
Confidence 457899999999999998885 7899999887653 11 11111 1 123 3799999999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEE
Q 023455 244 GTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 244 ~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
+|+.++.+.+++.||.-+-+++.
T Consensus 208 gTi~a~i~Ll~e~Ga~VvGv~vl 230 (268)
T TIGR01743 208 GTINGMINLLDEFDAEVAGIGVL 230 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEE
Confidence 99999999999999988777763
No 61
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=90.52 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=63.0
Q ss_pred HHHHHHhcCC-CCCCceEeecCCchhHHHHhhhc--CCC-EEEEEEEeeC---C------------ccEEE-eec----C
Q 023455 171 LLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFP-TVVCAKVREG---D------------KRIVR-IKE----G 226 (282)
Q Consensus 171 ~la~~l~~~~-~~~~~viv~pd~g~~~ra~~~a~--~~~-~~~~~k~R~~---~------------~~i~~-~~~----~ 226 (282)
.+++.|.+.+ ..+..+|+++..+|+..|..++. +.+ +..+.+.|+. . ..... .+. .
T Consensus 71 ~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~ 150 (233)
T PRK06031 71 ALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLP 150 (233)
T ss_pred HHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccc
Confidence 3555554432 23457999999999999998875 322 2223332321 0 00000 011 2
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
.++|++|+||||+++||+|+.++++.|+++|++.+.+.+
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v 189 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGA 189 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEE
Confidence 368999999999999999999999999999998665443
No 62
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=98.89 E-value=7e-09 Score=85.64 Aligned_cols=115 Identities=22% Similarity=0.184 Sum_probs=87.6
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhh--cCCCEEEEEEEeeCCccE-------------EEeecCCC-CCC
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKML--DHFPTVVCAKVREGDKRI-------------VRIKEGNP-AGC 231 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a--~~~~~~~~~k~R~~~~~i-------------~~~~~~~v-~gk 231 (282)
...+++++++...+.+..+|++.++.|.-+--.+| .|+.++-++|.-+.+++. +++-.+.+ .|.
T Consensus 44 lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~ 123 (183)
T KOG1712|consen 44 LIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQ 123 (183)
T ss_pred HHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCC
Confidence 46778888887543456899999999987765554 366777777665554422 12223444 589
Q ss_pred eEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcCCC
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLSKP 282 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~~~ 282 (282)
+|+||||++.||||+.+|.+++.+.||.-|.+.|+-.+-+=+..+||--+|
T Consensus 124 rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~~p 174 (183)
T KOG1712|consen 124 RVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKGKP 174 (183)
T ss_pred eEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCCCc
Confidence 999999999999999999999999999999999998887777777776544
No 63
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.89 E-value=1.4e-08 Score=84.95 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCE-EEEEEEeeC--C-ccEEEeecCCCCCCeEEEEecccc
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPT-VVCAKVREG--D-KRIVRIKEGNPAGCHVVIVDDLVQ 241 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~-~~~~k~R~~--~-~~i~~~~~~~v~gk~vlIVDDIi~ 241 (282)
....||+.|.+. .+.++++++..||+.++..++. +.+. .+++-.+.. . +..........+||+|||||||+|
T Consensus 18 ~i~~la~~I~~~--~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~~~~~~gk~VLIVDDIiD 95 (156)
T PRK09177 18 DARALAWRLLPA--GQWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKRAEGDGEGFLVVDDLVD 95 (156)
T ss_pred HHHHHHHHHHhh--CCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEecCCCcCcCEEEEEeeeeC
Confidence 456777777653 2468999999999999999986 4443 223322221 1 122111123569999999999999
Q ss_pred chHHHHHHHHHHHH
Q 023455 242 SGGTLIECQKVLAA 255 (282)
Q Consensus 242 TG~Tl~~~a~~Lk~ 255 (282)
||+|+.++.+.+++
T Consensus 96 TG~Tl~~v~~~l~~ 109 (156)
T PRK09177 96 TGGTARAVREMYPK 109 (156)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999975
No 64
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=99.86 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=41.8
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTF 270 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~f 270 (282)
...++||+|+||||++|||.|+.++++.|+++||++|+++++-+.+
T Consensus 353 ~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i 398 (501)
T PRK09246 353 RAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPV 398 (501)
T ss_pred cccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcccc
Confidence 4568999999999999999999999999999999999999876543
No 65
>PRK09213 pur operon repressor; Provisional
Probab=98.85 E-value=2.4e-08 Score=90.52 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCceEeecCCchhHHHHhhhc--CCCEEEEEEEeeC-Ccc-------------EEE--eecCCC-CCCeEEEEeccccch
Q 023455 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREG-DKR-------------IVR--IKEGNP-AGCHVVIVDDLVQSG 243 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~--~~~~~~~~k~R~~-~~~-------------i~~--~~~~~v-~gk~vlIVDDIi~TG 243 (282)
+..+|+++..+|++.|..+|. +.|+.+++|..+. ++. +.. .....+ +|.+|+||||+++||
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccC
Confidence 456899999999999998885 7899999886543 111 111 111233 799999999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEE
Q 023455 244 GTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 244 ~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
+|+.+++++++++||.-+-+++.
T Consensus 210 gTi~a~i~Ll~e~Ga~VvGv~vl 232 (271)
T PRK09213 210 GTINGMISLLKEFDAEVVGIGVL 232 (271)
T ss_pred HhHHHHHHHHHHCCCEEEEEEEE
Confidence 99999999999999998777653
No 66
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.84 E-value=9.3e-09 Score=88.54 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=69.2
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CC-CEEEEEEEeeCC-------ccEEEeecCC-CCCCeEEEE
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HF-PTVVCAKVREGD-------KRIVRIKEGN-PAGCHVVIV 236 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~-~~~~~~k~R~~~-------~~i~~~~~~~-v~gk~vlIV 236 (282)
....||+.|.+. ++.+.+|+++.-||+.-++.+++ +. ++..+.-+.... ..+.....-+ +.||+||||
T Consensus 15 ~~~~lA~kI~~s-~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIV 93 (192)
T COG2236 15 LCRALAEKIRAS-GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIV 93 (192)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEE
Confidence 467789999764 57889999999999999888875 33 444433222211 1122222334 899999999
Q ss_pred eccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 237 DDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 237 DDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
|||.|||.||..+.+.|++..+..+..+
T Consensus 94 DDI~DTG~Tl~~a~~~l~~~~p~e~rta 121 (192)
T COG2236 94 DDIVDTGETLELALEELKKLAPAEVRTA 121 (192)
T ss_pred ecccCchHhHHHHHHHHHhhCchhhhhh
Confidence 9999999999999999999666666433
No 67
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.82 E-value=2.4e-08 Score=97.22 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC--------------cc-EEEeecCCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD--------------KR-IVRIKEGNPAG 230 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~--------------~~-i~~~~~~~v~g 230 (282)
-..+.+.|.+....+.+++++.-..+...|..+++ +.|+.. +-|.|... .+ .+......++|
T Consensus 269 R~~~G~~La~~~~~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~g 348 (471)
T PRK06781 269 RKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEG 348 (471)
T ss_pred HHHHHHHHhhhCCCCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCC
Confidence 34566666654323334455443456666766664 566532 22333211 01 12223456899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTF 270 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~f 270 (282)
|+|+||||+++||.|+.++++.|+++||++|+++.+-+-+
T Consensus 349 k~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPpi 388 (471)
T PRK06781 349 KRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPL 388 (471)
T ss_pred ceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCCc
Confidence 9999999999999999999999999999999999776543
No 68
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.81 E-value=2.9e-08 Score=97.21 Aligned_cols=101 Identities=22% Similarity=0.154 Sum_probs=70.2
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC------c--------cEE-EeecCCCC
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K--------RIV-RIKEGNPA 229 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~------~--------~i~-~~~~~~v~ 229 (282)
.-..++++|.+....+.++|++.-..++..|..++. ++|+.. +.|.|... . +.. ......++
T Consensus 297 ~R~~~G~~La~~~~~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~ 376 (500)
T PRK07349 297 YRQRLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLA 376 (500)
T ss_pred HHHHHHHHHhhhcccCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccC
Confidence 345677888664334456677766677777888775 667642 33444331 0 111 11245679
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
||+|+||||+++||.|+.++++.|+++||++|++...-+
T Consensus 377 gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sP 415 (500)
T PRK07349 377 GKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSP 415 (500)
T ss_pred CCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence 999999999999999999999999999999999884443
No 69
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.76 E-value=4.2e-08 Score=95.56 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC--------------cc-EEEeecCCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD--------------KR-IVRIKEGNPAG 230 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~--------------~~-i~~~~~~~v~g 230 (282)
-..+.+.|.+....+.+++++.-..+...|..+++ +.|+.. +-|.|... .+ .+......++|
T Consensus 269 R~~~G~~La~~~~~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~g 348 (475)
T PRK07631 269 RKNLGKRLALEAPVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEG 348 (475)
T ss_pred HHHHHHHHHhhCCCCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCC
Confidence 34566667664333444444433356666777764 566532 22333211 00 11122456899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
|+|+||||+++||.|+.++++.|+++||++|++..+-+-
T Consensus 349 k~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPp 387 (475)
T PRK07631 349 KRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPP 387 (475)
T ss_pred ceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCC
Confidence 999999999999999999999999999999999976653
No 70
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.9e-08 Score=82.09 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=73.0
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhcC---------CC--EEEEEEEeeCCccE---EEee----cCCCC
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDH---------FP--TVVCAKVREGDKRI---VRIK----EGNPA 229 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~~---------~~--~~~~~k~R~~~~~i---~~~~----~~~v~ 229 (282)
-.+-||+-+.+..+.++.++++..+|+.++.+++.+. .| +.+++-+...+... +... ..++.
T Consensus 45 r~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt 124 (216)
T KOG3367|consen 45 RVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT 124 (216)
T ss_pred HHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc
Confidence 4566788887766667889999999999998887531 23 34454433333211 1112 23589
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
||+|+|||||++||.||......+++.+++.|.++.
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas 160 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS 160 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHHHHhcCccceeeee
Confidence 999999999999999999999999999999998885
No 71
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.73 E-value=6.9e-08 Score=93.58 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCCCc-eEeecCCchhHHHHhhhc--CCCEEE-EEEEeeC------Cc------cE---EEeecCCCC
Q 023455 169 IPLLKQRLHQLPDANNI-VIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREG------DK------RI---VRIKEGNPA 229 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~-viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~------~~------~i---~~~~~~~v~ 229 (282)
-..+++.|.+....+.+ ++--|+. +...|..+++ +.|+.. +.|.|.. .. .+ .......++
T Consensus 259 R~~~g~~La~~~~~~~D~Vv~VP~s-g~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~ 337 (442)
T TIGR01134 259 RKRMGEKLARESPVEADVVIPVPDS-GRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFR 337 (442)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCC-HHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCC
Confidence 34566666654333333 4444554 5777777775 566532 2333321 00 01 111245689
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
||+|+||||+++||.|+.++++.|+++||++|++++.
T Consensus 338 gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 338 GKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 9999999999999999999999999999999998876
No 72
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.60 E-value=2.8e-07 Score=89.92 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCCCCc-eEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCC------c---c--EEEe----ecCCCCC
Q 023455 170 PLLKQRLHQLPDANNI-VIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K---R--IVRI----KEGNPAG 230 (282)
Q Consensus 170 ~~la~~l~~~~~~~~~-viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~------~---~--i~~~----~~~~v~g 230 (282)
..+++.|.+....+.+ ++--|+.+ ...|..+++ +.|+.. +.|.|... . + .+.. ....++|
T Consensus 278 ~~~G~~La~~~~~~~D~VvpVP~s~-~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~g 356 (474)
T PRK06388 278 VRMGMRLAKESPVEADVVVPVPDSG-RSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISG 356 (474)
T ss_pred HHHHHHHHhhccCCCcEEEeeCCCc-HHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccC
Confidence 3466666554222333 44446655 444555554 556532 33444321 0 0 1111 1235789
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
|+|+||||+++||.|+.++++.|+++||++|++..+-+
T Consensus 357 k~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 357 KRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred ceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99999999999999999999999999999999986654
No 73
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.46 E-value=1.2e-06 Score=86.05 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCCCCceEee-cCCchhHHHHhhhc--CCCEEE-EEEEeeCC---------c--cEEEe----ecCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAF-PDDGAWKRFHKMLD--HFPTVV-CAKVREGD---------K--RIVRI----KEGNPA 229 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~-pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~---------~--~i~~~----~~~~v~ 229 (282)
-..+.+.|.+....+.++++. ||. |..-|..++. +.|+.. +.|.|... . ..+.. ....++
T Consensus 288 R~~~G~~La~~~~~~~D~VvpVP~s-G~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~ 366 (510)
T PRK07847 288 RVEIGRRLAREHPVEADLVIPVPES-GTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIR 366 (510)
T ss_pred HHHHHHHHHhhCCCCCeEEEeccCc-hHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccC
Confidence 345666676543334444444 765 4666666664 555422 23332210 0 01111 133479
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
||+|+||||+++||.|+.++++.|+++||++|++...-+-
T Consensus 367 gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPp 406 (510)
T PRK07847 367 GKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPP 406 (510)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 9999999999999999999999999999999999866553
No 74
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.45 E-value=8.9e-06 Score=75.37 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=100.4
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeee-CCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F-~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~ 93 (282)
..+.+-...+...+|..+|+.|| .++..+.-.++ ++||.+. ..+..+++|++|+|+..+.+... .++..++++++
T Consensus 160 ~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~~~~~-~~~~~~v~g~~vliVDDii~tG~--Tl~~a~~~l~~ 235 (308)
T TIGR01251 160 NPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATNEVEV-MNLVGDVEGKDVVIVDDIIDTGG--TIAKAAEILKS 235 (308)
T ss_pred CCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCCEEEE-EecccccCCCEEEEEccccCCHH--HHHHHHHHHHh
Confidence 34444445667789999999996 99998888888 7887543 34457899999999999987754 34567789999
Q ss_pred cCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023455 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (282)
Q Consensus 94 ~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la 173 (282)
.|+++|.++.++-- ++...+.++.++ |+|+|++.|.|... .+|. ++..+ +.++.||
T Consensus 236 ~ga~~v~~~~th~v-------------~~~~a~~~l~~~------~~~~iv~tdt~~~~--~~~~-~~~~v--~va~~la 291 (308)
T TIGR01251 236 AGAKRVIAAATHGV-------------FSGPAIERIANA------GVEEVIVTNTIPHE--KHKP-KVSVI--SVAPLIA 291 (308)
T ss_pred cCCCEEEEEEEeee-------------cCcHHHHHHHhC------CCCEEEEeCCCCcc--ccCC-CcEEE--EhHHHHH
Confidence 99999999998311 112234566653 79999999998764 2433 34444 5789999
Q ss_pred HHHhcC
Q 023455 174 QRLHQL 179 (282)
Q Consensus 174 ~~l~~~ 179 (282)
+.|.+.
T Consensus 292 ~~i~~~ 297 (308)
T TIGR01251 292 EAIRRI 297 (308)
T ss_pred HHHHHH
Confidence 999775
No 75
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.33 E-value=6.8e-06 Score=71.13 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=80.2
Q ss_pred hHHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEE--EEEEEee------------------CC--------
Q 023455 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTV--VCAKVRE------------------GD-------- 217 (282)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~--~~~k~R~------------------~~-------- 217 (282)
+-..||+.|.+..+.+++++.+.--||++-+..+++ |.++. +.+|--. .+
T Consensus 10 AGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~ 89 (220)
T COG1926 10 AGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLG 89 (220)
T ss_pred HHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhcc
Confidence 567899999875335778889999999999888875 55543 3444321 00
Q ss_pred --------------ccEE--------EeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchh
Q 023455 218 --------------KRIV--------RIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIR 275 (282)
Q Consensus 218 --------------~~i~--------~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~ 275 (282)
.++. .....+++||+||||||=+.||.||..+++.++++|+++|.+++ +++++.+.
T Consensus 90 i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~p~~a~ 167 (220)
T COG1926 90 IDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVAPEDAA 167 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc--ccCCHHHH
Confidence 0000 00123689999999999999999999999999999999998876 77887777
Q ss_pred hhh
Q 023455 276 ARS 278 (282)
Q Consensus 276 ~~~ 278 (282)
+.+
T Consensus 168 ~~l 170 (220)
T COG1926 168 AEL 170 (220)
T ss_pred HHH
Confidence 654
No 76
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.09 E-value=3.2e-05 Score=64.49 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=67.4
Q ss_pred HHHHHHHhc-CCCCCCceEeecCCchhHHHHhhhc------C--CCEEEE--EEEeeCCc-----c--E-EEeecCCCCC
Q 023455 170 PLLKQRLHQ-LPDANNIVIAFPDDGAWKRFHKMLD------H--FPTVVC--AKVREGDK-----R--I-VRIKEGNPAG 230 (282)
Q Consensus 170 ~~la~~l~~-~~~~~~~viv~pd~g~~~ra~~~a~------~--~~~~~~--~k~R~~~~-----~--i-~~~~~~~v~g 230 (282)
.-++.+|.+ +-+.+++++++.-.+|++.|..+++ | +|+..+ .-.|+.-. . + .+....++.|
T Consensus 17 tRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~ 96 (179)
T COG2065 17 TRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITG 96 (179)
T ss_pred HHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCcccccC
Confidence 335555533 3356789999999999999988763 2 344332 22333110 0 1 1224568999
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCC-CCEEEEEEE
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHG-AAKKTWRML 266 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~G-A~~V~v~~t 266 (282)
|+|+||||++-||.|+.+|.+.|.+.| +.+|..+|.
T Consensus 97 k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavL 133 (179)
T COG2065 97 KRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVL 133 (179)
T ss_pred CEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEE
Confidence 999999999999999999999999998 567777653
No 77
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.92 E-value=2.6e-05 Score=74.53 Aligned_cols=100 Identities=20% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCCCceEeecCCchhHHHHhhhc--CCCEEE-EEEEeeCCcc-----------EE--E--eecCCCCC
Q 023455 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGDKR-----------IV--R--IKEGNPAG 230 (282)
Q Consensus 169 ~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~a~--~~~~~~-~~k~R~~~~~-----------i~--~--~~~~~v~g 230 (282)
-..+.+.|.+....+-+++++.-..+..-|-.+++ |.|+.. +-|.|+.... .+ + .....++|
T Consensus 269 R~~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~G 348 (470)
T COG0034 269 RKRMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKG 348 (470)
T ss_pred HHHHHHHHHHhCCccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCC
Confidence 34566666654323334444433345555555553 566532 2344443211 01 1 12456899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
|+|+||||-|-.|.|..+.+++|+++||++|++...-+
T Consensus 349 KrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP 386 (470)
T COG0034 349 KRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASP 386 (470)
T ss_pred CeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCC
Confidence 99999999999999999999999999999999985443
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=97.80 E-value=8.7e-05 Score=66.48 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=61.2
Q ss_pred ceEeecCCchhHHHHhhh---cCCCEEEEEEEeeCCc-cEE---EeecCCCC-CCeEEEEeccccchHHHHHHHHHHHHC
Q 023455 185 IVIAFPDDGAWKRFHKML---DHFPTVVCAKVREGDK-RIV---RIKEGNPA-GCHVVIVDDLVQSGGTLIECQKVLAAH 256 (282)
Q Consensus 185 ~viv~pd~g~~~ra~~~a---~~~~~~~~~k~R~~~~-~i~---~~~~~~v~-gk~vlIVDDIi~TG~Tl~~~a~~Lk~~ 256 (282)
.++|+..-.|......+. .+.....+.-+|+..+ +.. ..+..++. +++|+|+|||+.||+|+..+.+.|++.
T Consensus 104 i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~ 183 (244)
T PLN02541 104 VAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSR 183 (244)
T ss_pred EEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHc
Confidence 566666666666544443 2344444444555432 211 11244564 679999999999999999999999999
Q ss_pred CCC--EEEEEEEccccCCchhhhhc
Q 023455 257 GAA--KKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 257 GA~--~V~v~~tH~~fs~~~~~~~~ 279 (282)
|+. +|.+++. +-++..++++.
T Consensus 184 Gv~~~~I~~v~~--ias~~Gl~~i~ 206 (244)
T PLN02541 184 GASVEQIRVVCA--VAAPPALKKLS 206 (244)
T ss_pred CCCcccEEEEEE--EECHHHHHHHH
Confidence 998 5555544 66666666654
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.74 E-value=0.00015 Score=63.36 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=66.9
Q ss_pred CceEeecCCchhHHHHhhh---cCCCEEEEEEEeeCCc-cE---EEeecCCCCCCeEEEEeccccchHHHHHHHHHHHHC
Q 023455 184 NIVIAFPDDGAWKRFHKML---DHFPTVVCAKVREGDK-RI---VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAH 256 (282)
Q Consensus 184 ~~viv~pd~g~~~ra~~~a---~~~~~~~~~k~R~~~~-~i---~~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~ 256 (282)
+.++|+..-+|......+. ++.++..+.-+|+.++ +. ...+..++++++|+|+|-|+.||+|+.++.+.|++.
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~ 147 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEH 147 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHT
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHc
Confidence 6788888888887766554 3556666666676654 21 122466789999999999999999999999999999
Q ss_pred CC--CEEEEEEEccccCCchhhhhc
Q 023455 257 GA--AKKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 257 GA--~~V~v~~tH~~fs~~~~~~~~ 279 (282)
|+ ++|.+++. +-++..++++.
T Consensus 148 G~~~~~I~~v~~--ias~~Gl~~l~ 170 (207)
T PF14681_consen 148 GVPEENIIIVSV--IASPEGLERLL 170 (207)
T ss_dssp TG-GGEEEEEEE--EEEHHHHHHHH
T ss_pred CCCcceEEEEEE--EecHHHHHHHH
Confidence 87 56766654 33455555543
No 80
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00052 Score=59.73 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=64.8
Q ss_pred ceEeecCCchhHHHHhhhc---CCCEEEEEEEeeCCc-cEE---EeecCCCCCCeEEEEeccccchHHHHHHHHHHHHC-
Q 023455 185 IVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDK-RIV---RIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAH- 256 (282)
Q Consensus 185 ~viv~pd~g~~~ra~~~a~---~~~~~~~~k~R~~~~-~i~---~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~- 256 (282)
.++|+..-.|+.....+.+ ...+..+--+|+..+ +.. .-+..++++++|+|+|-|+.||+|+..+.+.|++.
T Consensus 72 i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G 151 (210)
T COG0035 72 IVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG 151 (210)
T ss_pred EEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC
Confidence 6667666666666555443 334555555676554 221 11345899999999999999999999999999999
Q ss_pred CCCEEEEEEEccccCCchhhhhc
Q 023455 257 GAAKKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 257 GA~~V~v~~tH~~fs~~~~~~~~ 279 (282)
|+++|.++|. +-++...++..
T Consensus 152 ~~~~I~~v~~--vAapeGi~~v~ 172 (210)
T COG0035 152 GPKNIKVVSL--VAAPEGIKAVE 172 (210)
T ss_pred CCceEEEEEE--EecHHHHHHHH
Confidence 8898888765 44555555543
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00027 Score=66.22 Aligned_cols=44 Identities=32% Similarity=0.317 Sum_probs=40.0
Q ss_pred ecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 224 KEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 224 ~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
+...++||+|+||||-|--|.|+.++.++||++||++|+....-
T Consensus 350 l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAs 393 (474)
T KOG0572|consen 350 LRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIAS 393 (474)
T ss_pred chhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecC
Confidence 45689999999999999999999999999999999999887543
No 82
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.03 E-value=0.032 Score=51.65 Aligned_cols=133 Identities=16% Similarity=0.109 Sum_probs=90.1
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhcccc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~~ 94 (282)
..+++-.-.+....+..+|+.|| +++.-+.-.+..+++.++......+++|++|+|+....+-..-| .-.++.|++.
T Consensus 161 ~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl--~~aa~~Lk~~ 237 (301)
T PRK07199 161 RPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTL--IEAARQLRAA 237 (301)
T ss_pred CcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHH--HHHHHHHHHC
Confidence 33444444567789999999996 88877666666666544444444578999999999987653332 2466889999
Q ss_pred CcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHH
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~ 174 (282)
||++|.++.-.-=. +.....++.. .|++.|++-|-+... .++ + +.++++|+
T Consensus 238 GA~~V~~~~tHgvf-------------s~~a~~~l~~------~~i~~iv~Tdti~~~------~~~--~--sva~lla~ 288 (301)
T PRK07199 238 GAASPDCVVVHALF-------------AGDAYSALAA------AGIARVVSTDTVPHP------SNA--I--SLAPLLAE 288 (301)
T ss_pred CCcEEEEEEEeeeC-------------ChHHHHHHHh------CCCCEEEEeCCccCC------CCE--E--ehHHHHHH
Confidence 99999988754322 2233444444 378999999965311 011 2 56889999
Q ss_pred HHhcC
Q 023455 175 RLHQL 179 (282)
Q Consensus 175 ~l~~~ 179 (282)
.|++.
T Consensus 289 ~i~~~ 293 (301)
T PRK07199 289 ALRRE 293 (301)
T ss_pred HHHHH
Confidence 99774
No 83
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.86 E-value=0.042 Score=50.41 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=84.2
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCch-hhHHHHHHHHhcccc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPG-VIFEQISVIYALPRL 94 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~-~lmelll~~~a~~~~ 94 (282)
.+++-...+...+|..+|+.|| +++..+.-.+...++..+. ....+++|++|+|+....+-. .+. -.+++|++.
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~~~~~~-~~~~~v~Gk~VlIVDDIi~TG~Tl~---~aa~~Lk~~ 230 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISPTEVEIA-PKNLDVKGKDVLIVDDIISTGGTMA---TAIKILKEQ 230 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEe-ccccccCCCEEEEEcCccccHHHHH---HHHHHHHHC
Confidence 3555455668899999999996 8887666555555533222 123468999999999887653 443 355788999
Q ss_pred CcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHH
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~ 174 (282)
||+++.++.-+-=.+ ....-++.. .|+|.|++.|-+.... ..+ +.+++||+
T Consensus 231 GA~~V~~~~~H~i~~-------------~~a~~~l~~------~~i~~i~~tnti~~~~--------~~~--~va~~la~ 281 (285)
T PRK00934 231 GAKKVYVACVHPVLV-------------GDAILKLYN------AGVDEIIVTDTLESEV--------SKI--SVAPLIAD 281 (285)
T ss_pred CCCEEEEEEEeeccC-------------cHHHHHHHh------CCCCEEEEcCCCCCCc--------eEE--EcHHHHHH
Confidence 999998887531111 112233444 3789999999874221 112 56789999
Q ss_pred HHh
Q 023455 175 RLH 177 (282)
Q Consensus 175 ~l~ 177 (282)
.|+
T Consensus 282 ~i~ 284 (285)
T PRK00934 282 LLK 284 (285)
T ss_pred HHh
Confidence 884
No 84
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.72 E-value=0.091 Score=49.03 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=89.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
...+++-.-.+....|+.+|+.||+.++..+.=.+..+++.+ ...+..+|+|++|+|+....+- ..+. -.+++|+
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~-~~~~~gdv~Gr~viIVDDIidTG~Tl~---~aa~~Lk 241 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT-VMNIIGDVQGKTCVLVDDLVDTAGTLC---AAAAALK 241 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceE-EEecccCCCCCEEEEEecccCchHHHH---HHHHHHH
Confidence 344555555678899999999994256655544444444322 3344568999999999998765 3443 4677899
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhcccCCCCcccccchHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFETGIP 170 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~--~~~~gff~~~v~~l~~~~~~ 170 (282)
+.||++|.++.-.-=++. ..+-++.+ +|+++|++-|-.. ...+.. ..+..+ +.++
T Consensus 242 ~~GA~~V~~~~THgvfs~-------------~a~~~l~~------s~i~~iv~Tdtip~~~~~~~~--~k~~~i--sva~ 298 (319)
T PRK04923 242 QRGALKVVAYITHPVLSG-------------PAVDNINN------SQLDELVVTDTIPLSEAARAC--AKIRQL--SVAE 298 (319)
T ss_pred HCCCCEEEEEEECcccCc-------------hHHHHHhh------CCCCEEEEeCCccCchhhccc--CCeEEE--EhHH
Confidence 999999998876543322 22334443 3899999999642 221111 112222 5688
Q ss_pred HHHHHHhcC
Q 023455 171 LLKQRLHQL 179 (282)
Q Consensus 171 ~la~~l~~~ 179 (282)
+||+.|.+.
T Consensus 299 lla~~i~~~ 307 (319)
T PRK04923 299 LLAETIRRI 307 (319)
T ss_pred HHHHHHHHH
Confidence 999999764
No 85
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.66 E-value=0.13 Score=47.77 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=89.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCC--CceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHh
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD--GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~d--GE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a 90 (282)
+..+.+-.-.+...+|+.+|+.|++.++.-+.-.+..+ |+. ....+..+|+|++|+|+..+.+- ..+. ..++.
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~-~~~~~~~dv~gr~viIVDDIi~TG~Tl~---~aa~~ 223 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQV-VANRVVGDVEGRTCVLVDDMIDTGGTIA---GAVRA 223 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCce-EEEecCcCCCCCEEEEEccccCcHHHHH---HHHHH
Confidence 34455555567888999999999427777776666533 332 24455678999999999998765 3443 45678
Q ss_pred ccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhcccCCCCcccccch
Q 023455 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFETG 168 (282)
Q Consensus 91 ~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~--~~~~gff~~~v~~l~~~~ 168 (282)
|++.|+++|.++.-+-=.+ ...+-++.+ .|++.|++.|-+. .... ...+..+ +.
T Consensus 224 Lk~~Ga~~I~~~~tH~v~~-------------~~a~~~l~~------~~~~~i~~t~tip~~~~~~---~~~~~~~--sv 279 (304)
T PRK03092 224 LKEAGAKDVIIAATHGVLS-------------GPAAERLKN------CGAREVVVTDTLPIPEEKR---FDKLTVL--SI 279 (304)
T ss_pred HHhcCCCeEEEEEEcccCC-------------hHHHHHHHH------CCCCEEEEeeeeccchhhc---CCCeEEE--Eh
Confidence 9999999999888432221 223334544 3789999999642 2210 0112222 56
Q ss_pred HHHHHHHHhcC
Q 023455 169 IPLLKQRLHQL 179 (282)
Q Consensus 169 ~~~la~~l~~~ 179 (282)
++++|+.|...
T Consensus 280 a~~la~~i~~~ 290 (304)
T PRK03092 280 APLLARAIREV 290 (304)
T ss_pred HHHHHHHHHHH
Confidence 88999999775
No 86
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=96.30 E-value=0.1 Score=44.61 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=68.4
Q ss_pred hhhhhhhC--CCCceEEEecCCCHHHHHHHHHHcCCcc--eeeeeEeeeCC-----CceeEEEecCCCCCCCeEEEEeec
Q 023455 5 REIKAKKS--QKKQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFAD-----GWPNLYINSAHDIRGQHVAFLASF 75 (282)
Q Consensus 5 ~~~~~~~~--~~~~~~i~~~~~~~~la~~ia~~l~~~~--~~~~~~~~F~d-----GE~~v~v~~~~~v~g~dV~iiqs~ 75 (282)
.||.+... .+..+.|--.+++-.+|..+++.|+ .+ +.-+...+|-| |+..+.-.+..+++|++|+||...
T Consensus 23 ~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDI 101 (178)
T PRK15423 23 RQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDI 101 (178)
T ss_pred HHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeee
Confidence 45554443 2345666666889999999999995 76 56788898974 443333335568999999999998
Q ss_pred CCchhhHHHHHHHHhccccCcceEEEEe-ecCCCCCc
Q 023455 76 SSPGVIFEQISVIYALPRLFVASFTLVL-PFFPTGSF 111 (282)
Q Consensus 76 ~~~~~lmelll~~~a~~~~~a~~i~~vi-PY~~YsRq 111 (282)
.+.-.-|. .+.+.++..+++++..+. =+-+-.|+
T Consensus 102 iDTG~TL~--~l~~~l~~~~~~~v~~avL~~K~~~r~ 136 (178)
T PRK15423 102 IDSGNTLS--KVREILSLREPKSLAICTLLDKPSRRE 136 (178)
T ss_pred cCchHHHH--HHHHHHHhCCCCEEEEEEEEECCCCCc
Confidence 76543333 344556777788875444 44444454
No 87
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.04 E-value=0.21 Score=46.67 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=86.2
Q ss_pred CceEEE-ecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccc
Q 023455 15 KQVHLF-YCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (282)
Q Consensus 15 ~~~~i~-~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~ 93 (282)
.+++|+ .-.+...+|+.+|+.|| +++.-+...+ .+.+. ....+..+|+|++|+|+....+-..- +...+++|++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r-~~~~~-~~~~i~gdV~gk~viIVDDIidTG~T--l~~aa~~Lk~ 243 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQ-DDSER-EEGYIIGDVAGKKAILIDDILNTGKT--FAEAAKIVER 243 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEEEEec-CCCcc-eeeccccccCCCEEEEEcceeCcHHH--HHHHHHHHHh
Confidence 344444 44668899999999996 8876555333 22221 12234468999999999998765332 2346778999
Q ss_pred cCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023455 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (282)
Q Consensus 94 ~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la 173 (282)
.||++|.++.-..=++. ....++.+ +|+|+|++-|-+..... ..+ .+..+ +.++++|
T Consensus 244 ~GA~~V~~~~tHgif~~-------------~a~~~l~~------s~i~~iv~TdTi~~~~~-~~~-k~~~i--sva~lla 300 (323)
T PRK02458 244 EGATEIYAVASHGLFAG-------------GAAEVLEN------APIKEILVTDSVATKER-VPK-NVTYL--SASELIA 300 (323)
T ss_pred CCCCcEEEEEEChhcCc-------------hHHHHHhh------CCCCEEEEECCcCCchh-cCC-CcEEE--EhHHHHH
Confidence 99999999876643332 22334443 38899999996532211 111 12222 5688999
Q ss_pred HHHhcC
Q 023455 174 QRLHQL 179 (282)
Q Consensus 174 ~~l~~~ 179 (282)
+.|.+.
T Consensus 301 ~~i~~~ 306 (323)
T PRK02458 301 DAIIRI 306 (323)
T ss_pred HHHHHH
Confidence 999764
No 88
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.02 E-value=0.41 Score=44.47 Aligned_cols=139 Identities=19% Similarity=0.107 Sum_probs=87.5
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccccC
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~~~ 95 (282)
.+++-...+...+|..+|+.|| +++.-++-.+..+++. ....+..+++|++|+|+....+-..-|. ..++.|++.|
T Consensus 160 ~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~-~~~~~~~~~~g~~vliVDDii~TG~T~~--~a~~~l~~~G 235 (309)
T PRK01259 160 LVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVS-EVMNIIGDVEGRDCILVDDMIDTAGTLC--KAAEALKERG 235 (309)
T ss_pred cEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeE-EEEeecccCCCCEEEEEecccCcHHHHH--HHHHHHHccC
Confidence 3444444668899999999996 9887766666555543 2334456899999999999876543322 4567889999
Q ss_pred cceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHH
Q 023455 96 VASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQR 175 (282)
Q Consensus 96 a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~la~~ 175 (282)
++++.++..+.=.+ ...+-++.+ .++|.|++.|-+...........+..+ +.++++|+.
T Consensus 236 a~~v~~~~tH~i~~-------------~~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~~k~~~i--sva~~ia~~ 294 (309)
T PRK01259 236 AKSVYAYATHPVLS-------------GGAIERIEN------SVIDELVVTDSIPLSEEAKKCDKIRVL--SVAPLLAEA 294 (309)
T ss_pred CCEEEEEEEeeeCC-------------hHHHHHHhc------CCCCEEEEecCcccchhhccCCCeEEE--EcHHHHHHH
Confidence 99998877532111 122223333 378999999964321110000112222 568899999
Q ss_pred HhcC
Q 023455 176 LHQL 179 (282)
Q Consensus 176 l~~~ 179 (282)
|...
T Consensus 295 i~~~ 298 (309)
T PRK01259 295 IRRI 298 (309)
T ss_pred HHHH
Confidence 9774
No 89
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.96 E-value=0.35 Score=45.15 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=87.1
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCC-CceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~d-GE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
..+++=.-.+....|+.+|+.|| .++.-++-++-.+ +.......+..+++|++|+||....+- ..+ .-.+++|+
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl---~~aa~~Lk 241 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTI---CHAADALA 241 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHH---HHHHHHHH
Confidence 34444444667899999999996 8876544433322 111222344568999999999998765 343 34677899
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~l 172 (282)
+.||++|.++.-..=++. ..+-++.+ +|++.|++-|-+....... ..++..+ +.+++|
T Consensus 242 ~~GA~~V~~~~tHglf~~-------------~a~~~l~~------~~i~~iv~Tdti~~~~~~~-~~k~~~i--sva~~l 299 (320)
T PRK02269 242 EAGATEVYASCTHPVLSG-------------PALDNIQK------SAIEKLVVLDTIYLPEERL-IDKIEQI--SIADLL 299 (320)
T ss_pred HCCCCEEEEEEECcccCc-------------hHHHHHHh------CCCCEEEEeCCCCCccccc-cCCeEEE--EhHHHH
Confidence 999999988876643332 22334433 3789999999642111111 1122222 568899
Q ss_pred HHHHhcC
Q 023455 173 KQRLHQL 179 (282)
Q Consensus 173 a~~l~~~ 179 (282)
|+.|.+.
T Consensus 300 a~~i~~~ 306 (320)
T PRK02269 300 GEAIIRI 306 (320)
T ss_pred HHHHHHH
Confidence 9999775
No 90
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=95.91 E-value=0.014 Score=50.29 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
..+.+++|||=+|||.|+..+++.|++.-+.+=+++++=
T Consensus 120 ~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL 158 (191)
T PF15609_consen 120 NARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASL 158 (191)
T ss_pred CCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEE
Confidence 467999999999999999999999998877665665553
No 91
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=95.72 E-value=0.6 Score=43.22 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred CceEEEec-CCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYC-VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
.++++++- .+...+|+.+++.|++.++..+.-.+..++... ...+..++.|++|+|+..+.+- ..++ ..+++|+
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~-~~~~~~~v~g~~viivDDii~TG~Tl~---~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE-VMNLIGDVKGKVAIMVDDMIDTAGTIT---KGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceee-eEecCCCCCCCEEEEEcCcccchHHHH---HHHHHHH
Confidence 34555444 567799999999993377777666665444322 3345678999999999987654 3443 3557889
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~l 172 (282)
+.|++++.++....=.+ ...+-++.+ ++++.|++.|-+.......|+ .+..+ +.+++|
T Consensus 227 ~~Ga~~v~~~~tH~v~~-------------~~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~-~~~~~--~v~~~l 284 (302)
T PLN02369 227 QEGAREVYACATHAVFS-------------PPAIERLSS------GLFQEVIVTNTIPVSEKNYFP-QLTVL--SVANLL 284 (302)
T ss_pred hCCCCEEEEEEEeeeeC-------------HHHHHHHHh------CCCCEEEEeCCCCChhhcccC-CceEE--EHHHHH
Confidence 99999999888322111 112223333 368999999865321111122 23333 568899
Q ss_pred HHHHhcC
Q 023455 173 KQRLHQL 179 (282)
Q Consensus 173 a~~l~~~ 179 (282)
|+.|.+.
T Consensus 285 a~~i~~~ 291 (302)
T PLN02369 285 GETIWRV 291 (302)
T ss_pred HHHHHHH
Confidence 9999775
No 92
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=95.56 E-value=0.24 Score=42.26 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=64.0
Q ss_pred hhhhhhCCCCceEEEecCCCHHHHHHHHHHcCCcce--eeeeEeeeCCCce--eEE--EecCCCCCCCeEEEEeecCCch
Q 023455 6 EIKAKKSQKKQVHLFYCVECEELARKVAAQSDLITL--QSINWRNFADGWP--NLY--INSAHDIRGQHVAFLASFSSPG 79 (282)
Q Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~--~~~~~~~F~dGE~--~v~--v~~~~~v~g~dV~iiqs~~~~~ 79 (282)
++......+..++|-..++...+|..+|+.|| +++ .-+...++.+++. +++ .....+++|++|+||....+..
T Consensus 32 ~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG 110 (181)
T PRK09162 32 EITADLADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEG 110 (181)
T ss_pred HHHHHcCCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcH
Confidence 34333333345566566778899999999995 764 3455566655432 122 2234579999999998877664
Q ss_pred hhHHHHHHHHhccccCcceEEEEeecC
Q 023455 80 VIFEQISVIYALPRLFVASFTLVLPFF 106 (282)
Q Consensus 80 ~lmelll~~~a~~~~~a~~i~~viPY~ 106 (282)
.-++ ..++.|++.|+++|.++.-+-
T Consensus 111 ~Tl~--~~~~~Lk~~Ga~~V~~avL~~ 135 (181)
T PRK09162 111 HTLA--AIRDRCLEMGAAEVYSAVLVD 135 (181)
T ss_pred HHHH--HHHHHHHhCCCCEEEEEEEEE
Confidence 4333 345668888999998876543
No 93
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.49 E-value=0.6 Score=45.40 Aligned_cols=137 Identities=9% Similarity=0.012 Sum_probs=88.0
Q ss_pred ceEEEec-CCCHHHHHHHHHHcCC-----cceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHH
Q 023455 16 QVHLFYC-VECEELARKVAAQSDL-----ITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (282)
Q Consensus 16 ~~~i~~~-~~~~~la~~ia~~l~~-----~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~ 88 (282)
+.++++- .++..-|+.+|+.|+. .++.-+.=.|..++|.+ ...+..+|.|++|+|+..+.+- ..+.+ .+
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~---aa 355 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE-KMDLVGNVYDSDVIIVDDMIDTSGTLCE---AA 355 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE-EEeccCCCCCCEEEEEcceeCcHHHHHH---HH
Confidence 3444443 3456789999999941 45555555566666643 3445679999999999998765 34443 56
Q ss_pred HhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCC--chhhhcccCCCCccccc
Q 023455 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH--ALQERFYFSDHVLPLFE 166 (282)
Q Consensus 89 ~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH--~~~~~gff~~~v~~l~~ 166 (282)
.+|++.||++|.++.-.-=. +...+.++.+ +|+++|++-|-+ ....... ..+..+
T Consensus 356 ~~Lk~~GA~~V~~~~THglf-------------s~~A~~rl~~------s~i~~IvvTdTIp~~~~~~~~--~k~~vi-- 412 (439)
T PTZ00145 356 KQLKKHGARRVFAFATHGLF-------------SGPAIERIEA------SPLEEVVVTDTVKSNKNIDSC--KKITKL-- 412 (439)
T ss_pred HHHHHcCCCEEEEEEEcccC-------------ChhHHHHHhc------CCCCEEEEeCCCcCchhhccc--CCeEEE--
Confidence 78899999999988755432 2334445544 378999999964 2221110 112222
Q ss_pred chHHHHHHHHhcC
Q 023455 167 TGIPLLKQRLHQL 179 (282)
Q Consensus 167 ~~~~~la~~l~~~ 179 (282)
+.+++||+.|...
T Consensus 413 sVA~llAeaI~~i 425 (439)
T PTZ00145 413 SVSVLVADAIRRI 425 (439)
T ss_pred EhHHHHHHHHHHH
Confidence 5688999999774
No 94
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=95.09 E-value=0.23 Score=46.01 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=90.6
Q ss_pred ceEEEec-CCCHHHHHHHHHHcCCcceeeeeEeee-CCCceeEEEecCCCCCCCeEEEEeecCC-chhhHHHHHHHHhcc
Q 023455 16 QVHLFYC-VECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYINSAHDIRGQHVAFLASFSS-PGVIFEQISVIYALP 92 (282)
Q Consensus 16 ~~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F-~dGE~~v~v~~~~~v~g~dV~iiqs~~~-~~~lmelll~~~a~~ 92 (282)
+++|+|- .+.-.-|+.+|+.|| .++.-++=+|- .+.+.++.. +.-+|+||+++|+..+-+ ...+. ..+++|+
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~~v~~~~-~~gdV~gk~~iiVDDiIdTgGTi~---~Aa~~Lk 238 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRLG-APLAIIDKRRDSSPNVVEVMN-LIGDVEGKDVVIVDDIIDTGGTIA---KAAKALK 238 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHhC-CCEEEEEEeecCCCCeEEEee-cccccCCCEEEEEeccccccHHHH---HHHHHHH
Confidence 4555553 446688999999996 88888887776 556554433 456899999999998754 34443 3667899
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeC--CchhhhcccCCCCcccccchHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI--HALQERFYFSDHVLPLFETGIP 170 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdl--H~~~~~gff~~~v~~l~~~~~~ 170 (282)
+.||++|.++.-.-=++ ....+.+++ ..++.|++-|- |. ..+-+ . .+..+ +.++
T Consensus 239 ~~GAk~V~a~~tH~vfs--------------~~a~~~l~~-----~~i~~vivTnTi~~~-~~~~~-~-~~~~i--sva~ 294 (314)
T COG0462 239 ERGAKKVYAAATHGVFS--------------GAALERLEA-----SAIDEVIVTDTIPLP-EKKKI-P-KVSVI--SVAP 294 (314)
T ss_pred HCCCCeEEEEEEchhhC--------------hHHHHHHhc-----CCCCEEEEeCCcccc-ccccc-C-ceEEE--EhHH
Confidence 99999999876543332 234466664 24899999883 43 21111 1 22333 5789
Q ss_pred HHHHHHhcC
Q 023455 171 LLKQRLHQL 179 (282)
Q Consensus 171 ~la~~l~~~ 179 (282)
++|+.|.+.
T Consensus 295 liaeaI~ri 303 (314)
T COG0462 295 LIAEAIRRI 303 (314)
T ss_pred HHHHHHHHH
Confidence 999999875
No 95
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=94.99 E-value=0.55 Score=39.49 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=63.5
Q ss_pred hhhhhhhCCCCceEEEecCCCHHHHHHHHHHcCCcc--eeeeeEeeeCCC-----ceeEEEecCCCCCCCeEEEEeecCC
Q 023455 5 REIKAKKSQKKQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFSS 77 (282)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~--~~~~~~~~F~dG-----E~~v~v~~~~~v~g~dV~iiqs~~~ 77 (282)
.||......+..+++-..++.-.+|..+++.|+ .+ +..+.+..|.|+ +..+......++.|++|+|+..+.+
T Consensus 17 ~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~ 95 (166)
T TIGR01203 17 KQITEDYAGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVD 95 (166)
T ss_pred HHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeC
Confidence 445444333344555555778899999999996 64 556677767544 2223333566899999999998866
Q ss_pred c-hhhHHHHHHHHhccccCcceEEEEeecC
Q 023455 78 P-GVIFEQISVIYALPRLFVASFTLVLPFF 106 (282)
Q Consensus 78 ~-~~lmelll~~~a~~~~~a~~i~~viPY~ 106 (282)
. ..+.+ .+++|+..++++|.++.-+.
T Consensus 96 TG~Tl~~---~~~~l~~~g~~~i~~~~l~~ 122 (166)
T TIGR01203 96 TGLTLQY---LLDLLKARKPKSLKIVTLLD 122 (166)
T ss_pred cHHHHHH---HHHHHHHCCCCEEEEEEEEe
Confidence 5 34444 34466677888886665443
No 96
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=94.94 E-value=1.9 Score=40.48 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=87.8
Q ss_pred CceEEEec-CCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYC-VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
.+++|++- .+...+|+.+|+.|++.+...+.-.+-.+++. ....+..++.|++|+|+....+- ..+. -.+++|+
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~-~~~~~~~~v~g~~viiVDDii~TG~T~~---~a~~~L~ 254 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA-EVLNVIGDVKGKTAILVDDMIDTGGTIC---EGARLLR 254 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCcee-eeEeccccCCCCEEEEEccccCcHHHHH---HHHHHHh
Confidence 34555554 55778999999999536777666555544432 23344568999999999987665 3443 4568899
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchh-hhcccCCCCcccccchHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQ-ERFYFSDHVLPLFETGIPL 171 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~-~~gff~~~v~~l~~~~~~~ 171 (282)
+.|+++|.++...-=. +...+.++.+ .++|.|++.|-+..- ...| + .+..+ +.+++
T Consensus 255 ~~Ga~~v~~~~tH~v~-------------s~~a~~~l~~------~~id~iv~tnti~~~~~~~~-~-~~~~~--~va~l 311 (330)
T PRK02812 255 KEGAKQVYACATHAVF-------------SPPAIERLSS------GLFEEVIVTNTIPVPEERRF-P-QLKVL--SVANM 311 (330)
T ss_pred ccCCCeEEEEEEcccC-------------ChHHHHHHhh------CCCCEEEEeCCCCChhhccc-C-CceEE--EHHHH
Confidence 9999999998833111 1222334433 378999999976421 1112 1 22222 56889
Q ss_pred HHHHHhcC
Q 023455 172 LKQRLHQL 179 (282)
Q Consensus 172 la~~l~~~ 179 (282)
||+.|.+.
T Consensus 312 la~~i~~~ 319 (330)
T PRK02812 312 LGEAIWRI 319 (330)
T ss_pred HHHHHHHH
Confidence 99998764
No 97
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=94.17 E-value=1.2 Score=35.39 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=44.5
Q ss_pred chhHHHHhhhc--CCCEEEEEEEeeCCccEEEeecCCCCCCeEEEEeccccc-hHH---HHHHHHHHHHCCCCEEEEEEE
Q 023455 193 GAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQS-GGT---LIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 193 g~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~T-G~T---l~~~a~~Lk~~GA~~V~v~~t 266 (282)
+.-..+..+++ +.++..+.-.|-.+++....+.++++|++|+||=++... -.. +.-+++.+|+.||++|.++.-
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViP 87 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIP 87 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEES
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 44445555553 445555555666666654445789999999999998865 233 344778999999999988864
Q ss_pred c
Q 023455 267 L 267 (282)
Q Consensus 267 H 267 (282)
+
T Consensus 88 Y 88 (116)
T PF13793_consen 88 Y 88 (116)
T ss_dssp S
T ss_pred c
Confidence 3
No 98
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=93.82 E-value=1.5 Score=37.72 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=63.4
Q ss_pred hhhhhhhCCCCceEEEecCCCHHHHHHHHHHcCCc---c--eeeeeEeeeCCC-----ceeEEE-ecCCCCCCCeEEEEe
Q 023455 5 REIKAKKSQKKQVHLFYCVECEELARKVAAQSDLI---T--LQSINWRNFADG-----WPNLYI-NSAHDIRGQHVAFLA 73 (282)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~---~--~~~~~~~~F~dG-----E~~v~v-~~~~~v~g~dV~iiq 73 (282)
.||.+....+..+++--.++.-.+|..++..|+ . + +..+...+|.+| +..+.. .+..+++|++|+||.
T Consensus 26 ~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVD 104 (189)
T PLN02238 26 AQIASDYAGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVE 104 (189)
T ss_pred HHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEe
Confidence 445444323345555556778899999999995 6 3 345667777653 332322 334579999999999
Q ss_pred ecCCch-hhHHHHHHHHhccccCcceEEEEeecC
Q 023455 74 SFSSPG-VIFEQISVIYALPRLFVASFTLVLPFF 106 (282)
Q Consensus 74 s~~~~~-~lmelll~~~a~~~~~a~~i~~viPY~ 106 (282)
...+.- .+.+ +++.++..|++++.++.-+.
T Consensus 105 DIidTG~Tl~~---~~~~l~~~g~~~v~~avL~d 135 (189)
T PLN02238 105 DIVDTGNTLSA---LVAHLEAKGAASVSVCALLD 135 (189)
T ss_pred cccchHHHHHH---HHHHHHhCCCCEEEEEEEEE
Confidence 876653 3333 44677888999887665443
No 99
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=92.81 E-value=2.1 Score=37.55 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred ceEEEecCCCHHHHHHHHHHcCC--c--ceeeeeEeeeCCC-----ceeEEEecCCCCCCCeEEEEeecCCch-hhHHHH
Q 023455 16 QVHLFYCVECEELARKVAAQSDL--I--TLQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFSSPG-VIFEQI 85 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~--~--~~~~~~~~~F~dG-----E~~v~v~~~~~v~g~dV~iiqs~~~~~-~lmell 85 (282)
.++|--.++.-.+|..++..|+. + ++..+.+..|-|| +..+...+..+++|++|+||-..-+.- .+..
T Consensus 59 ~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~-- 136 (211)
T PTZ00271 59 LYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQY-- 136 (211)
T ss_pred eEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHH--
Confidence 34555568899999999999831 3 4678888888664 333333456789999999999876553 3333
Q ss_pred HHHHhccccCcceEEE-EeecCCCCC
Q 023455 86 SVIYALPRLFVASFTL-VLPFFPTGS 110 (282)
Q Consensus 86 l~~~a~~~~~a~~i~~-viPY~~YsR 110 (282)
+++.|+..+++++.. ++=+=|-.|
T Consensus 137 -v~~~l~~~~p~svk~avL~dK~~~r 161 (211)
T PTZ00271 137 -LMRFMLAKKPASLKTVVLLDKPSGR 161 (211)
T ss_pred -HHHHHHhcCCCEEEEEEEEEcccCC
Confidence 334555557777744 443333333
No 100
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=92.79 E-value=2 Score=36.62 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=62.4
Q ss_pred hhhhhhhCCCCceEEEecCCCHHHHHHHHHHcCCcc--eeeeeEeeeCCC-----ceeEEEecCCCCCCCeEEEEeecCC
Q 023455 5 REIKAKKSQKKQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFSS 77 (282)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~--~~~~~~~~F~dG-----E~~v~v~~~~~v~g~dV~iiqs~~~ 77 (282)
+||.+.-..+..++|--..++-.++..++..+. ++ +..+.+.+|-+| +..+.-.+.++++|+||+||...-+
T Consensus 26 ~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiD 104 (178)
T COG0634 26 AQITEDYGGKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIID 104 (178)
T ss_pred HHHHHhhCCCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccc
Confidence 344444444555666556888888888888873 54 567888888664 3333334678999999999988754
Q ss_pred chhhHHHHHHHHhccccCcceEEEEeec
Q 023455 78 PGVIFEQISVIYALPRLFVASFTLVLPF 105 (282)
Q Consensus 78 ~~~lmelll~~~a~~~~~a~~i~~viPY 105 (282)
...-|. .+.+-|+..+|+++..+.--
T Consensus 105 sG~TLs--~i~~~l~~r~a~sv~i~tLl 130 (178)
T COG0634 105 SGLTLS--KVRDLLKERGAKSVRIATLL 130 (178)
T ss_pred cChhHH--HHHHHHHhCCCCeEEEEEEe
Confidence 422221 23344556778887666543
No 101
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=91.89 E-value=1.6 Score=41.72 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=85.7
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCcee-----EEEec-CCCCCCCeEEEEeecCCc-hhhHHHHHHH
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPN-----LYINS-AHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~-----v~v~~-~~~v~g~dV~iiqs~~~~-~~lmelll~~ 88 (282)
.+++-.-.+.-..|+.+|+.|| .++.-+.-.|..+++.+ +...+ +.+|.|++|+|+..+.+- ..+ .-.+
T Consensus 209 ~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl---~~aa 284 (382)
T PRK06827 209 LMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSM---IDAA 284 (382)
T ss_pred cEEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHH---HHHH
Confidence 3444444557789999999996 88876665553322211 22233 338999999999998765 344 3467
Q ss_pred HhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeC--CchhhhcccCCCCccccc
Q 023455 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI--HALQERFYFSDHVLPLFE 166 (282)
Q Consensus 89 ~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdl--H~~~~~gff~~~v~~l~~ 166 (282)
+.|++.||++|.++....-++ ..+-++.+..+ ..++++|++-|- |....... ..+..+
T Consensus 285 ~~Lk~~GA~~V~~~~tH~vf~--------------~a~~~l~~~~~--~g~i~~iv~TdTi~~~~~~~~~--~~~~~i-- 344 (382)
T PRK06827 285 KELKSRGAKKIIVAATFGFFT--------------NGLEKFDKAYE--EGYFDRIIGTNLVYHPEELLSK--PWYIEV-- 344 (382)
T ss_pred HHHHHcCCCEEEEEEEeecCh--------------HHHHHHHhhcc--cCCCCEEEEeCCCcCchhhccc--CCeEEE--
Confidence 788999999998887764443 12223333211 124899999884 33222110 111222
Q ss_pred chHHHHHHHHhcC
Q 023455 167 TGIPLLKQRLHQL 179 (282)
Q Consensus 167 ~~~~~la~~l~~~ 179 (282)
+.++++|+.|.+.
T Consensus 345 sva~llA~~I~~~ 357 (382)
T PRK06827 345 DMSKLIARIIDAL 357 (382)
T ss_pred EcHHHHHHHHHHH
Confidence 5688999999774
No 102
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=91.85 E-value=2.3 Score=39.96 Aligned_cols=142 Identities=10% Similarity=0.029 Sum_probs=89.5
Q ss_pred CceEEEec-CCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 15 KQVHLFYC-VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 15 ~~~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
.+++|++- .+....|+.+|+.|| .++.-++-.+...++.+ ...+..++.|++|+||..+.+- ..+. ..++.++
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~-~~~~~gdv~Gk~VIIVDDIi~TG~Tl~---~aa~~Lk 242 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAE-SINVLGEVKNKNCLIVDDMIDTGGTVI---AAAKLLK 242 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEe-eEEeeccCCCCEEEEEeccccchHHHH---HHHHHHH
Confidence 44555554 447799999999996 88877766665555432 2333468999999999998765 3443 3557899
Q ss_pred ccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023455 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (282)
Q Consensus 93 ~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~~~v~~l~~~~~~~l 172 (282)
+.||++|.++.-..=++. ...-++.++.. ..|+|+|++-|-+....... ...+..+ +.++++
T Consensus 243 ~~GA~~V~~~atHglf~~-------------~a~~~l~~~~~--~~~i~~iv~Tntip~~~~~~-~~~~~~v--sva~~l 304 (332)
T PRK00553 243 KQKAKKVCVMATHGLFNK-------------NAIQLFDEAFK--KKLIDKLFVSNSIPQTKFEK-KPQFKVV--DLAHLY 304 (332)
T ss_pred HcCCcEEEEEEEeeecCc-------------hHHHHHHhccc--cCCCCEEEEeCCccCccccc-CCCeEEE--EhHHHH
Confidence 999999988876543322 23334432100 13789999999653211100 0112222 568899
Q ss_pred HHHHhcC
Q 023455 173 KQRLHQL 179 (282)
Q Consensus 173 a~~l~~~ 179 (282)
|+.|...
T Consensus 305 a~~i~~~ 311 (332)
T PRK00553 305 EEVLLCY 311 (332)
T ss_pred HHHHHHH
Confidence 9999764
No 103
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=91.24 E-value=3.1 Score=37.35 Aligned_cols=99 Identities=9% Similarity=0.118 Sum_probs=63.3
Q ss_pred hhhhhhhhCCCCceEEEecCCCHHHHHHHHHHcCC----------cce---eeeeEeeeCC----CceeEEEecCCCCCC
Q 023455 4 KREIKAKKSQKKQVHLFYCVECEELARKVAAQSDL----------ITL---QSINWRNFAD----GWPNLYINSAHDIRG 66 (282)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~----------~~~---~~~~~~~F~d----GE~~v~v~~~~~v~g 66 (282)
++||.+....+..++|--.++.-.++..+.+.|.. +++ ..+.++.|.| ||..+.-....++.|
T Consensus 71 A~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~g 150 (241)
T PTZ00149 71 AYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKD 150 (241)
T ss_pred HHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccccccCC
Confidence 45565555445556666668888888888887731 123 6677777755 444333233456899
Q ss_pred CeEEEEeecCCch-hhHHHHHHHHhccccCcceEEEEeec
Q 023455 67 QHVAFLASFSSPG-VIFEQISVIYALPRLFVASFTLVLPF 105 (282)
Q Consensus 67 ~dV~iiqs~~~~~-~lmelll~~~a~~~~~a~~i~~viPY 105 (282)
++|+||....+.. .+.++ ++.|++.|++++.++.-.
T Consensus 151 k~VLIVDDIidTG~Tl~~~---~~~L~~~g~~~V~va~L~ 187 (241)
T PTZ00149 151 KHVLIVEDIIDTGNTLVKF---CEYLKKFEPKTIRIATLF 187 (241)
T ss_pred CEEEEEEeEeChHHHHHHH---HHHHHhcCCCEEEEEEEE
Confidence 9999999886653 34333 356777888888666543
No 104
>PF15610 PRTase_3: PRTase ComF-like
Probab=88.95 E-value=0.68 Score=42.01 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
...++||.||.+|||--||++=..+.+.+++.|++....+.
T Consensus 133 ~~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yl 173 (274)
T PF15610_consen 133 KEFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYL 173 (274)
T ss_pred HHHhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEE
Confidence 34579999999999999999999999999999999854443
No 105
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=88.50 E-value=6.5 Score=34.25 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=59.6
Q ss_pred ceEEEe-cCCCHHHHHHHHHHcCCcceeeeeEeeeCC--CceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhc
Q 023455 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNFAD--GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (282)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~F~d--GE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~ 91 (282)
++++++ .++...++..+++.|+..+++.+...+... +....+.+++.++.|++|+|+..+-.- ..+.. .++.|
T Consensus 71 ~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~---ai~~L 147 (209)
T PRK00129 71 KLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIA---AIDLL 147 (209)
T ss_pred eEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHH---HHHHH
Confidence 344444 478899999999999756777777655422 122245567889999999999887544 34433 44566
Q ss_pred cccCcceEEEEee
Q 023455 92 PRLFVASFTLVLP 104 (282)
Q Consensus 92 ~~~~a~~i~~viP 104 (282)
++.|+++|.++.-
T Consensus 148 ~~~G~~~I~~~~l 160 (209)
T PRK00129 148 KKRGAKNIKVLCL 160 (209)
T ss_pred HHcCCCEEEEEEE
Confidence 7778999877765
No 106
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=88.47 E-value=0.69 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=33.2
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCE
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAK 260 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~ 260 (282)
..|+--|+|++.=-+++||.|+.+|.+.|+++|...
T Consensus 184 ppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017|consen 184 PPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred CCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCc
Confidence 568889999999999999999999999999999763
No 107
>PLN02440 amidophosphoribosyltransferase
Probab=88.21 E-value=8 Score=38.16 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=72.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeee-eEeeeC------------CCceeEEEec-CCCCCCCeEEEEeecCCch
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSI-NWRNFA------------DGWPNLYINS-AHDIRGQHVAFLASFSSPG 79 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~-~~~~F~------------dGE~~v~v~~-~~~v~g~dV~iiqs~~~~~ 79 (282)
+..+++-.-.+...+|..+++.+| +++... .-.++. ++....+... ...++|++|+||.....--
T Consensus 275 ~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittG 353 (479)
T PLN02440 275 DCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRG 353 (479)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHhC-CCchhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcH
Confidence 345666555667789999999996 887521 123332 1212223222 2458999999998765543
Q ss_pred hhHHHHHHHHhccccCcceEEEEeecCC--------CCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 023455 80 VIFEQISVIYALPRLFVASFTLVLPFFP--------TGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI 148 (282)
Q Consensus 80 ~lmelll~~~a~~~~~a~~i~~viPY~~--------YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdl 148 (282)
.-|. -+++.|+++||++|.+++---| ..=.+|.+.-+--.+...+++.| |+|.+..+.+
T Consensus 354 tTl~--~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~--------~~dsl~~l~~ 420 (479)
T PLN02440 354 TTSS--KIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFI--------GCDSLAFLPL 420 (479)
T ss_pred HHHH--HHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHh--------CCCEEEEecH
Confidence 3332 2567888999998877655322 22223333222234555666665 5677776654
No 108
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=86.66 E-value=9.6 Score=37.64 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=55.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeE-eeeC----------CCceeEEEec---CCCCCCCeEEEEeecCCc-
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINW-RNFA----------DGWPNLYINS---AHDIRGQHVAFLASFSSP- 78 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~-~~F~----------dGE~~v~v~~---~~~v~g~dV~iiqs~~~~- 78 (282)
...+++---.+...+|..+++.+| +++...-+ .+|- ..+..+++.. .+.++|++|++|.....-
T Consensus 295 ~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG 373 (479)
T PRK09123 295 DADVVVPVPDSGVPAAIGYAQESG-IPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRG 373 (479)
T ss_pred CCeEEEEcCccHHHHHHHHHHhcC-CCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCch
Confidence 344555555667789999999996 98753222 2332 0111233322 334789999999876544
Q ss_pred hhhHHHHHHHHhccccCcceEEEEe
Q 023455 79 GVIFEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 79 ~~lmelll~~~a~~~~~a~~i~~vi 103 (282)
..+. .+++.|+++||++|.+.+
T Consensus 374 ~Tl~---~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 374 TTSR---KIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred HHHH---HHHHHHHHcCCCEEEEEE
Confidence 3333 467788999999998887
No 109
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=85.95 E-value=4.5 Score=40.01 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=71.9
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeE------eee--CCC---ceeEEEe---cCCCCCCCeEEEEeecCCchh
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW------RNF--ADG---WPNLYIN---SAHDIRGQHVAFLASFSSPGV 80 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~------~~F--~dG---E~~v~v~---~~~~v~g~dV~iiqs~~~~~~ 80 (282)
..+++-.-++...+|..+|+.+| +++..--+ ++| |.. +.+++.. +...++|++|++|...-.--.
T Consensus 286 ~D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~ 364 (484)
T PRK07272 286 ADIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGT 364 (484)
T ss_pred CCEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchH
Confidence 34555444566789999999996 98643221 234 221 1122222 245688999999987644333
Q ss_pred hHHHHHHHHhccccCcceEEEEee--------cCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 023455 81 IFEQISVIYALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI 148 (282)
Q Consensus 81 lmelll~~~a~~~~~a~~i~~viP--------Y~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdl 148 (282)
-+. -++.+|+++||+.|.+.+- |++..++.+...-..-.+...+++.+ |+|.+..+.+
T Consensus 365 T~~--~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~--------~~dsl~~~~~ 430 (484)
T PRK07272 365 TSR--RIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDII--------GADSLTYLSV 430 (484)
T ss_pred HHH--HHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHh--------CCCEEEEecH
Confidence 222 3567888999999988877 55555555432111123445555554 5576666653
No 110
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=84.66 E-value=15 Score=30.86 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred CceEEEecCCCHHHHHHHHHHcC---Ccc--eeeeeEeeeCCCc-----e-eEE-EecCCCCCCCeEEEEeecCCch-hh
Q 023455 15 KQVHLFYCVECEELARKVAAQSD---LIT--LQSINWRNFADGW-----P-NLY-INSAHDIRGQHVAFLASFSSPG-VI 81 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~---~~~--~~~~~~~~F~dGE-----~-~v~-v~~~~~v~g~dV~iiqs~~~~~-~l 81 (282)
..+.+--..+.-.+|..+++.|+ +++ +..+....|-|+. . .++ ..+..++.|++|+|+....+.. .+
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl 111 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTI 111 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHH
Confidence 34445555778899999999993 132 4555566666542 1 111 2344578999999999876653 44
Q ss_pred HHHHHHHHhccccC-cceEEEEeec
Q 023455 82 FEQISVIYALPRLF-VASFTLVLPF 105 (282)
Q Consensus 82 melll~~~a~~~~~-a~~i~~viPY 105 (282)
.+ +++.|++.| ++++.++.-+
T Consensus 112 ~~---~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 112 RA---ALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred HH---HHHHHHhcCCCcEEEEEEEE
Confidence 33 345666666 5666554443
No 111
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=83.78 E-value=8.6 Score=37.59 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=59.4
Q ss_pred hhhCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeE-eeeC-----CCc-------eeEEEe-cCCCCCCCeEEEEee
Q 023455 9 AKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINW-RNFA-----DGW-------PNLYIN-SAHDIRGQHVAFLAS 74 (282)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~-~~F~-----dGE-------~~v~v~-~~~~v~g~dV~iiqs 74 (282)
++......+++-.-.+...+|..+|+.|| +++...-+ +++. +.+ ...++. +.+.++|++|+||..
T Consensus 270 ~~~~~~~d~Vv~vPd~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDD 348 (445)
T PRK08525 270 KKFPIKADFVVPVPDSGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDD 348 (445)
T ss_pred HHhcccCCeEEECCchHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEec
Confidence 33333344544444455688999999996 87642222 1121 111 112222 234589999999988
Q ss_pred cCCchhhHHHHHHHHhccccCcceEEEEeecCCCCC
Q 023455 75 FSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGS 110 (282)
Q Consensus 75 ~~~~~~lmelll~~~a~~~~~a~~i~~viPY~~YsR 110 (282)
...--.-|. -+++.|+++||++|.+++..=+.+.
T Consensus 349 vitTG~Tl~--~a~~~Lr~aGA~~V~v~~~hp~~~~ 382 (445)
T PRK08525 349 SIVRGTTSK--KIVSLLRAAGAKEIHLRIACPEIKF 382 (445)
T ss_pred ccCcHHHHH--HHHHHHHhcCCCEEEEEEECCCcCC
Confidence 755433332 3668899999999998876655444
No 112
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=83.64 E-value=14 Score=30.93 Aligned_cols=76 Identities=12% Similarity=0.008 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHcCCcceeeeeEeee------------CCCceeEEEecCCCCCCCeEEEEeecCCch-hhHHHHHHHH
Q 023455 23 VECEELARKVAAQSDLITLQSINWRNF------------ADGWPNLYINSAHDIRGQHVAFLASFSSPG-VIFEQISVIY 89 (282)
Q Consensus 23 ~~~~~la~~ia~~l~~~~~~~~~~~~F------------~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~-~lmelll~~~ 89 (282)
.+.-.+|..+|..|+ +++..+.-... .+|+..+.+......+|++|+||....+.- .+.+ +++
T Consensus 55 ~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~---a~~ 130 (169)
T TIGR01090 55 ARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEA---TDE 130 (169)
T ss_pred hccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHH---HHH
Confidence 455689999999995 88654332222 233323444323345899999998876653 3433 456
Q ss_pred hccccCcceEEEE
Q 023455 90 ALPRLFVASFTLV 102 (282)
Q Consensus 90 a~~~~~a~~i~~v 102 (282)
.++++|++.+.++
T Consensus 131 ~L~~~Ga~~v~~~ 143 (169)
T TIGR01090 131 LIRKLGGEVVEAA 143 (169)
T ss_pred HHHHcCCEEEEEE
Confidence 7777888765443
No 113
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=83.15 E-value=9 Score=37.71 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=56.3
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeE-eee-------CCC---ceeEEEe---cCCCCCCCeEEEEeecCCchh
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW-RNF-------ADG---WPNLYIN---SAHDIRGQHVAFLASFSSPGV 80 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~-~~F-------~dG---E~~v~v~---~~~~v~g~dV~iiqs~~~~~~ 80 (282)
..+++-.-.+...+|..+|+.|| +++...-+ .++ |+. +..++++ +...++|++|++|.....--.
T Consensus 289 ~D~Vv~vPdsg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGt 367 (469)
T PRK05793 289 ADIVIGVPDSGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGT 367 (469)
T ss_pred CCEEEEcCccHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchH
Confidence 34444444456789999999996 98854211 221 111 1112222 235689999999987654433
Q ss_pred hHHHHHHHHhccccCcceEEEEeecCCC
Q 023455 81 IFEQISVIYALPRLFVASFTLVLPFFPT 108 (282)
Q Consensus 81 lmelll~~~a~~~~~a~~i~~viPY~~Y 108 (282)
-|. -++..||++||++|.+.+..=|.
T Consensus 368 Tl~--~~~~~Lr~aGAk~V~~~~~~p~~ 393 (469)
T PRK05793 368 TSK--RLVELLRKAGAKEVHFRVSSPPV 393 (469)
T ss_pred HHH--HHHHHHHHcCCCEEEEEEECCCc
Confidence 332 26788999999999888765544
No 114
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=82.98 E-value=8.8 Score=37.52 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=54.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeC--------C-CceeEEEe---cCCCCCCCeEEEEeecCCchhh
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFA--------D-GWPNLYIN---SAHDIRGQHVAFLASFSSPGVI 81 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~--------d-GE~~v~v~---~~~~v~g~dV~iiqs~~~~~~l 81 (282)
...+++-.-.+...+|..+|+.+| +++...-+++.. . -+..++.+ +...++|++|++|...-.--.-
T Consensus 271 ~~D~Vv~VPdsg~~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtT 349 (442)
T PRK08341 271 EGDVVIAVPDSGRTAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTT 349 (442)
T ss_pred CCceEEEecCchHHHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccHHH
Confidence 345555444455578999999996 988653333221 1 22222222 2456789999999876443333
Q ss_pred HHHHHHHHhccccCcceEEEEe
Q 023455 82 FEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 82 melll~~~a~~~~~a~~i~~vi 103 (282)
+. .++++|+++||++|.+.+
T Consensus 350 l~--~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 350 MK--RIVKMLRDAGAREVHVRI 369 (442)
T ss_pred HH--HHHHHHHhcCCcEEEEEE
Confidence 32 256889999999998877
No 115
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=82.92 E-value=17 Score=31.50 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=59.7
Q ss_pred ceEEEe-cCCCHHHHHHHHHHcCCcceeeeeEeeeCC-Cc-eeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhc
Q 023455 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNFAD-GW-PNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (282)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~F~d-GE-~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~ 91 (282)
++.+++ .++...++..+.+.|+..+++.+...+... ++ ...+.++++++.|++|+++..+-.- ..++ .+++.+
T Consensus 69 ~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~---~ai~~L 145 (207)
T TIGR01091 69 KIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMI---AALDLL 145 (207)
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHH---HHHHHH
Confidence 344444 478889999999999756777766655322 22 2235677889999999999887543 3443 345677
Q ss_pred cccCcceEEEEee
Q 023455 92 PRLFVASFTLVLP 104 (282)
Q Consensus 92 ~~~~a~~i~~viP 104 (282)
++.|+++|.++..
T Consensus 146 ~~~G~~~I~v~~l 158 (207)
T TIGR01091 146 KKRGAKKIKVLSI 158 (207)
T ss_pred HHcCCCEEEEEEE
Confidence 7788999888776
No 116
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=81.84 E-value=18 Score=33.86 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=53.9
Q ss_pred CceEeecCCchhHHHHhhhc---CCCEEEEEEEeeCCccE--EEeecCCCCCCeEEEEeccccchHHHHH---HHHHHHH
Q 023455 184 NIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRI--VRIKEGNPAGCHVVIVDDLVQSGGTLIE---CQKVLAA 255 (282)
Q Consensus 184 ~~viv~pd~g~~~ra~~~a~---~~~~~~~~k~R~~~~~i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~~---~a~~Lk~ 255 (282)
+..+++ -.+....+..+++ +.++..+..+|-.+++. ......+++|++|+||=-..+- .-+.+ +++.|++
T Consensus 16 ~~~i~~-g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~ 93 (326)
T PLN02297 16 QVHLFY-CEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPK 93 (326)
T ss_pred CeEEEE-CCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHH
Confidence 334443 3455666666664 35666666677666643 2223578999999998775544 44444 6788999
Q ss_pred CCCCEEEEEEEc
Q 023455 256 HGAAKKTWRMLL 267 (282)
Q Consensus 256 ~GA~~V~v~~tH 267 (282)
+||++|.++.-+
T Consensus 94 ~ga~~i~~ViPY 105 (326)
T PLN02297 94 LFVASFTLVLPF 105 (326)
T ss_pred cCCCEEEEEeeC
Confidence 999999888654
No 117
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=81.76 E-value=13 Score=31.14 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=48.8
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEee-eC-----------CCceeEEEecCCCCCCCeEEEEeecCCc-hhhH
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRN-FA-----------DGWPNLYINSAHDIRGQHVAFLASFSSP-GVIF 82 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~-F~-----------dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lm 82 (282)
.+++-...+.-.+|..+|..|| +++.-+.-.+ ++ .|+..+++.-...++|++|+||....+. ..+.
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~ 131 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLE 131 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHH
Confidence 3444334556799999999995 8875432211 11 1333444432234789999999988665 3332
Q ss_pred HHHHHHHhccccCcceE
Q 023455 83 EQISVIYALPRLFVASF 99 (282)
Q Consensus 83 elll~~~a~~~~~a~~i 99 (282)
-+++.++++|++.+
T Consensus 132 ---~~~~~l~~~Ga~~v 145 (175)
T PRK02304 132 ---AAIKLLERLGAEVV 145 (175)
T ss_pred ---HHHHHHHHcCCEEE
Confidence 34556777888654
No 118
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=81.08 E-value=17 Score=35.49 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=52.9
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEe------ee--CCCc---eeEEEe---cCCCCCCCeEEEEeecCCchh
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWR------NF--ADGW---PNLYIN---SAHDIRGQHVAFLASFSSPGV 80 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~------~F--~dGE---~~v~v~---~~~~v~g~dV~iiqs~~~~~~ 80 (282)
..+++-.-.+....|..+|+.+| +++...-++ +| |+.+ ..++.. ....++|++|+||.....--.
T Consensus 274 ~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~ 352 (442)
T TIGR01134 274 ADVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGT 352 (442)
T ss_pred CEEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccccH
Confidence 34444444455688999999996 887542222 22 2220 011111 234578999999987654433
Q ss_pred hHHHHHHHHhccccCcceEEEEee
Q 023455 81 IFEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 81 lmelll~~~a~~~~~a~~i~~viP 104 (282)
-|. .++..|+++||+.+.+.+.
T Consensus 353 T~~--~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 353 TSR--QIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred HHH--HHHHHHHHcCCcEEEEEEc
Confidence 222 3557888999999988776
No 119
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=77.25 E-value=9.6 Score=32.76 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred cCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCC
Q 023455 60 SAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRG 138 (282)
Q Consensus 60 ~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~ 138 (282)
+-.+|.|++++|+..+.+. ..++ -.++.||+.||++|.++..+-=.+- ... +.|+. .
T Consensus 77 vVGDV~gk~~IIvDDiIdtg~Tl~---~aA~~Lk~~GA~~V~~~aTHgvfs~-------------~A~-~~l~~-----s 134 (184)
T PF14572_consen 77 VVGDVKGKICIIVDDIIDTGGTLI---KAAELLKERGAKKVYACATHGVFSG-------------DAP-ERLEE-----S 134 (184)
T ss_dssp EES--TTSEEEEEEEEESSTHHHH---HHHHHHHHTTESEEEEEEEEE---T-------------THH-HHHHH-----S
T ss_pred EEEEccCCeEeeecccccchHHHH---HHHHHHHHcCCCEEEEEEeCcccCc-------------hHH-HHHhh-----c
Confidence 3468999999999988654 4453 4677899999999999887654432 122 33443 3
Q ss_pred CCCEEEEEeC--CchhhhcccCCCCcccccchHHHHHHHHhcC
Q 023455 139 GPTSLVIYDI--HALQERFYFSDHVLPLFETGIPLLKQRLHQL 179 (282)
Q Consensus 139 g~d~Ii~vdl--H~~~~~gff~~~v~~l~~~~~~~la~~l~~~ 179 (282)
.+|.|++-|- |..+.... ..+..+ +.+++||+.|++.
T Consensus 135 ~Id~vvvTnTIp~~~~~~~~--~Ki~vl--dis~llaeaI~ri 173 (184)
T PF14572_consen 135 PIDEVVVTNTIPQEEQKLQC--PKIKVL--DISPLLAEAIRRI 173 (184)
T ss_dssp SESEEEEETTS--HHHHHH---TTEEEE----HHHHHHHHHHH
T ss_pred CCeEEEEeccccCchhhhcC--CCEeEe--ehHHHHHHHHHHH
Confidence 6799999884 44322211 122223 4688999998764
No 120
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=77.13 E-value=31 Score=26.49 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=54.2
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEe----------eeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHH
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWR----------NFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQ 84 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~----------~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmel 84 (282)
...+--..+.-.+|..+|..|+ .++...... ....+.........+.++|++|+||....+. ..+.+
T Consensus 29 ~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~- 106 (125)
T PF00156_consen 29 DVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKE- 106 (125)
T ss_dssp SEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHH-
T ss_pred CEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHH-
Confidence 3444445667899999999995 876444322 1112211222345678899999999987554 44544
Q ss_pred HHHHHhccccCcceEEEEee
Q 023455 85 ISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 85 ll~~~a~~~~~a~~i~~viP 104 (282)
+++.+++.|++.+.++..
T Consensus 107 --~~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 107 --AIELLKEAGAKVVGVAVL 124 (125)
T ss_dssp --HHHHHHHTTBSEEEEEEE
T ss_pred --HHHHHHhCCCcEEEEEEE
Confidence 445777888888877653
No 121
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=76.70 E-value=19 Score=31.08 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=52.7
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCcee-E--EEe-cCCCCCCCeEEEEeecCCc-hhhHHHHHHHHh
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPN-L--YIN-SAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~-v--~v~-~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a 90 (282)
.+++-...+.-.+|..+|..|+ .++..+.-.++..|+.. . .+. ....++|++|+||....+. ..+.+ .++.
T Consensus 87 D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~---ai~~ 162 (200)
T PRK02277 87 DVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKE---TIEY 162 (200)
T ss_pred CEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHH---HHHH
Confidence 4555444667899999999995 88766554554333211 1 111 0135789999999987655 45544 3456
Q ss_pred ccccCcceEEEEe
Q 023455 91 LPRLFVASFTLVL 103 (282)
Q Consensus 91 ~~~~~a~~i~~vi 103 (282)
+++.|++.+.++.
T Consensus 163 l~~~Ga~~v~v~v 175 (200)
T PRK02277 163 LKEHGGKPVAVVV 175 (200)
T ss_pred HHHcCCEEEEEEE
Confidence 7788887765444
No 122
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=73.37 E-value=36 Score=28.59 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCcc
Q 023455 23 VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVA 97 (282)
Q Consensus 23 ~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a~ 97 (282)
.+.-.+|..+|..|| .++.-+.-.+...|+..... .+++|++|+||....+. ..+.+ .++.|+++|++
T Consensus 65 ~gGi~~A~~~a~~l~-~p~~~~rK~~k~~g~~~~~~---g~~~g~~VlIVDDvi~TG~T~~~---~~~~l~~~Ga~ 133 (170)
T PRK13811 65 VGGVPLAVAVSLAAG-KPYAIIRKEAKDHGKAGLII---GDVKGKRVLLVEDVTTSGGSALY---GIEQLRAAGAV 133 (170)
T ss_pred cCcHHHHHHHHHHHC-CCEEEEecCCCCCCCcceEE---cccCCCEEEEEEecccccHHHHH---HHHHHHHCCCe
Confidence 446789999999995 88776665555567543333 36899999999987554 45544 44566677763
No 123
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=70.81 E-value=11 Score=30.20 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=32.8
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
.++++|++++|+ =+|++-..++..|.+.|+++|+++.
T Consensus 7 ~~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 7 FGDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp HSTGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 468899999986 4899999999999999999998874
No 124
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=70.70 E-value=48 Score=28.48 Aligned_cols=79 Identities=16% Similarity=0.065 Sum_probs=48.9
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccc
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPR 93 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~ 93 (282)
..+++-...+.-.+|..+|..|+ +++.-..-.....|+. -.+. ...++|++|+||...-+. ..+.+. ++.+++
T Consensus 65 ~d~Ivgi~~gG~~~A~~la~~L~-~~~~~~rk~~~~~g~~-~~~~-~~~~~g~~VliVDDvi~tG~Tl~~~---~~~l~~ 138 (202)
T PRK00455 65 FDVVAGPATGGIPLAAAVARALD-LPAIFVRKEAKDHGEG-GQIE-GRRLFGKRVLVVEDVITTGGSVLEA---VEAIRA 138 (202)
T ss_pred CCEEEecccCcHHHHHHHHHHhC-CCEEEEecccCCCCCC-ceEE-ccCCCCCEEEEEecccCCcHHHHHH---HHHHHH
Confidence 34444444678899999999995 8876543322233321 1222 235679999999987554 445443 456677
Q ss_pred cCcceE
Q 023455 94 LFVASF 99 (282)
Q Consensus 94 ~~a~~i 99 (282)
.|++.+
T Consensus 139 ~Ga~~v 144 (202)
T PRK00455 139 AGAEVV 144 (202)
T ss_pred cCCEEE
Confidence 777654
No 125
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=69.63 E-value=71 Score=27.28 Aligned_cols=80 Identities=16% Similarity=0.021 Sum_probs=49.5
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcc
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~ 92 (282)
+..+++=...+.-.+|..+|..|+ .+.... ++.. |+..+.... .-.+|++|+||....+. ..+.+ +++.++
T Consensus 58 ~~d~Ivgi~~gGi~~A~~la~~L~-~~~i~~--~k~~-~~~~~~~~~-~l~~G~~VLIVDDIi~TG~Tl~~---a~~~l~ 129 (187)
T TIGR01367 58 KVDFIVGPAMGGVILGYEVARQLS-VRSIFA--EREG-GGMKLRRGF-AVKPGEKFVAVEDVVTTGGSLLE---AIRAIE 129 (187)
T ss_pred CCCEEEEEccCcHHHHHHHHHHhC-CCeEEE--EEeC-CcEEEeecc-cCCCCCEEEEEEeeecchHHHHH---HHHHHH
Confidence 334555444678899999999995 875432 3333 543322221 12579999999987665 33433 345668
Q ss_pred ccCcceEEE
Q 023455 93 RLFVASFTL 101 (282)
Q Consensus 93 ~~~a~~i~~ 101 (282)
+.|++.+.+
T Consensus 130 ~~Ga~vv~~ 138 (187)
T TIGR01367 130 GQGGQVVGL 138 (187)
T ss_pred HcCCeEEEE
Confidence 888876633
No 126
>PLN02501 digalactosyldiacylglycerol synthase
Probab=64.65 E-value=63 Score=33.82 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=59.2
Q ss_pred ecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCcee--EEEecCCCCCCCeEEEEeecCCc----hhhHHHHHHHHhcccc
Q 023455 21 YCVECEELARKVAAQSDLITLQSINWRNFADGWPN--LYINSAHDIRGQHVAFLASFSSP----GVIFEQISVIYALPRL 94 (282)
Q Consensus 21 ~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~--v~v~~~~~v~g~dV~iiqs~~~~----~~lmelll~~~a~~~~ 94 (282)
..+++.+|--+||+.|. .. -.+|-+|=.. .+-.+.+ .+++|.|+.+.+-| .++.-|+..+.-.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~--~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~- 353 (794)
T PLN02501 283 SDNHNDELDLRIASVLQ-ST-----GHCYDGGFWTDSSKHELSD--GKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKS- 353 (794)
T ss_pred cccccccchhhhhhhhh-cc-----CccccCCcccCcccccccc--CCCeEEEEEcccCcccccccccHHHHHHHhccc-
Confidence 34556678888888773 21 1223333100 0111111 25899999887766 355555665555554
Q ss_pred CcceEEEEeecCCCCCccccccCCCeee-----HHHHHHHHhc
Q 023455 95 FVASFTLVLPFFPTGSFERMEEEGDVAT-----AFTMARILSN 132 (282)
Q Consensus 95 ~a~~i~~viPY~~YsRqdr~~~~g~~~s-----a~~~a~lL~~ 132 (282)
|-.+||+|+|+++.+-|...+-++-.+. -..+-++|..
T Consensus 354 ~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~ 396 (794)
T PLN02501 354 AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEE 396 (794)
T ss_pred CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHH
Confidence 4579999999999776655543222222 2346778865
No 127
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=64.14 E-value=49 Score=28.63 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCc-ceeeeeEeeeCC-----CceeEEEecCCC-CCCCeEEEEeecCCchhhHH
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLI-TLQSINWRNFAD-----GWPNLYINSAHD-IRGQHVAFLASFSSPGVIFE 83 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~-~~~~~~~~~F~d-----GE~~v~v~~~~~-v~g~dV~iiqs~~~~~~lme 83 (282)
..+..++|.-+++---.|+-+|..|| + ++.-+.+..+.+ ||..++-.+.-+ ++|++|+||....+-..-|+
T Consensus 27 ~~~PDvIiaiaRGG~~pariLsd~L~-~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~ 104 (192)
T COG2236 27 GFKPDVIVAIARGGLIPARILSDFLG-VKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLE 104 (192)
T ss_pred CCCCCEEEEEcCCceehHHHHHHHhC-CCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHH
Confidence 36677888888888899999999997 6 778888877765 344444444445 88999999999876544444
No 128
>PLN02293 adenine phosphoribosyltransferase
Probab=63.26 E-value=96 Score=26.51 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=48.5
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCC------------ceeEEEecCCCC-CCCeEEEEeecCCc-hhh
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG------------WPNLYINSAHDI-RGQHVAFLASFSSP-GVI 81 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dG------------E~~v~v~~~~~v-~g~dV~iiqs~~~~-~~l 81 (282)
..++-...+.-.||..+|..|| .++.-+.-.+..+| +..+.+.. ..+ +|+.|+|+...-.. ..+
T Consensus 64 d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~-~~i~~G~rVlIVDDvitTG~T~ 141 (187)
T PLN02293 64 SVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHV-GAVEPGERALVIDDLIATGGTL 141 (187)
T ss_pred CEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEc-CccCCCCEEEEEeccccchHHH
Confidence 3333333556789999999996 88665444333223 22222222 234 79999999987654 444
Q ss_pred HHHHHHHHhccccCcceEEE
Q 023455 82 FEQISVIYALPRLFVASFTL 101 (282)
Q Consensus 82 melll~~~a~~~~~a~~i~~ 101 (282)
.+ +++.++++|+..+.+
T Consensus 142 ~~---~~~~l~~~Ga~~v~~ 158 (187)
T PLN02293 142 CA---AINLLERAGAEVVEC 158 (187)
T ss_pred HH---HHHHHHHCCCEEEEE
Confidence 44 446777788765433
No 129
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=62.91 E-value=74 Score=26.88 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=51.4
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCC-CCCeEEEEeecCCc-hhhHHHHHHHHhccc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDI-RGQHVAFLASFSSP-GVIFEQISVIYALPR 93 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v-~g~dV~iiqs~~~~-~~lmelll~~~a~~~ 93 (282)
...+-...+.-.+|..+|..|| .++.-..-.+-..|+... +. ..+ +|++|+||...-+. ..+.+ +++++++
T Consensus 60 d~ivg~~~ggi~lA~~lA~~l~-~p~~~~rk~~k~yg~~~~-~~--g~~~~g~~VlIVDDvitTG~Tl~~---~~~~l~~ 132 (176)
T PRK13812 60 TKLAGVALGAVPLVAVTSVETG-VPYVIARKQAKEYGTGNR-IE--GRLDEGEEVVVLEDIATTGQSAVD---AVEALRE 132 (176)
T ss_pred CEEEEeecchHHHHHHHHHHHC-CCEEEEeccCCcCCCCCe-EE--ecCCCcCEEEEEEEeeCCCHHHHH---HHHHHHH
Confidence 3333334556789999999996 887655554444464322 22 244 79999999987544 45554 4456667
Q ss_pred cCcce--EEEEeec
Q 023455 94 LFVAS--FTLVLPF 105 (282)
Q Consensus 94 ~~a~~--i~~viPY 105 (282)
+|++- +.+++-+
T Consensus 133 ~Ga~vv~~~vlvdr 146 (176)
T PRK13812 133 AGATVNRVLVVVDR 146 (176)
T ss_pred CCCeEEEEEEEEEC
Confidence 77653 4444554
No 130
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=61.09 E-value=17 Score=26.01 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=28.4
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
.-+++.+++++ .+|.....++..|++.|-..|+.+
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 34678899988 578888999999999999986643
No 131
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=60.12 E-value=47 Score=32.76 Aligned_cols=88 Identities=9% Similarity=0.020 Sum_probs=53.5
Q ss_pred CCceEEEecCCCHHHHHHHHHHcCCcceeeeeEe-ee-----C--CC---ceeEE--Ee-cCCCCCCCeEEEEeecCCch
Q 023455 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWR-NF-----A--DG---WPNLY--IN-SAHDIRGQHVAFLASFSSPG 79 (282)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~-~F-----~--dG---E~~v~--v~-~~~~v~g~dV~iiqs~~~~~ 79 (282)
...+++-.-.+...+|..+|+.+| +++...-++ ++ . +. +.+++ .. +.+.++|+.|++|.....--
T Consensus 283 ~~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittG 361 (471)
T PRK06781 283 EADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRG 361 (471)
T ss_pred CCcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccc
Confidence 344555444456788999999996 987542222 22 2 11 11121 11 24568899999997754332
Q ss_pred hhHHHHHHHHhccccCcceEEEEee
Q 023455 80 VIFEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 80 ~lmelll~~~a~~~~~a~~i~~viP 104 (282)
.-++ -++.+|+++||++|.+.+-
T Consensus 362 tTl~--~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 362 TTSK--RIVRMLREAGATEVHVRIA 384 (471)
T ss_pred hHHH--HHHHHHHHcCCcEEEEEEC
Confidence 2222 3667899999999988764
No 132
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=60.02 E-value=19 Score=26.62 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=26.7
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
++++++++++ +|.....++..|++.|-.+|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 5678899864 78888889999999999877553
No 133
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=59.35 E-value=69 Score=31.85 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=51.8
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCc-----------eeEEEe---cCCCCCCCeEEEEeecCCchhh
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGW-----------PNLYIN---SAHDIRGQHVAFLASFSSPGVI 81 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE-----------~~v~v~---~~~~v~g~dV~iiqs~~~~~~l 81 (282)
.+++-.-.+...+|..+|+.+| +++...-+++--.|- .+++.. ..+.++|++|++|.....--.-
T Consensus 295 D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaT 373 (501)
T PRK09246 295 DVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTT 373 (501)
T ss_pred cEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHH
Confidence 3444333445678999999996 887532222211111 011111 2456889999999876554333
Q ss_pred HHHHHHHHhccccCcceEEEEee
Q 023455 82 FEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 82 melll~~~a~~~~~a~~i~~viP 104 (282)
+. -++.+|+++||++|.+++-
T Consensus 374 l~--~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 374 SE--QIVQMAREAGAKKVYFASA 394 (501)
T ss_pred HH--HHHHHHHHcCCCEEEEEEE
Confidence 32 2567899999999877653
No 134
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=58.47 E-value=21 Score=25.20 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.1
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 228 PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
-+++.|+++++- |.....++..|++.|-..|+.+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 467888888876 7788889999999998888754
No 135
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=58.27 E-value=18 Score=26.40 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.6
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.+++++. +|.+...++..|++.|-..|+.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEE
Confidence 5778888877 8899999999999999988763
No 136
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=58.15 E-value=68 Score=31.96 Aligned_cols=85 Identities=9% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCc-----------ee--EEE-ecCCCCCCCeEEEEeecCCc-h
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGW-----------PN--LYI-NSAHDIRGQHVAFLASFSSP-G 79 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE-----------~~--v~v-~~~~~v~g~dV~iiqs~~~~-~ 79 (282)
..+++=.-.+.-.+|..+|+.+| +++...-+++.--|. .. +++ .+.+.++|+.|++|.....- .
T Consensus 313 ~DvVv~VP~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGt 391 (500)
T PRK07349 313 ADLVIGVPDSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGT 391 (500)
T ss_pred CcEEEEeccccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcH
Confidence 34444333445678999999996 988643333221211 11 121 13456789999999876443 3
Q ss_pred hhHHHHHHHHhccccCcceEEEEe
Q 023455 80 VIFEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 80 ~lmelll~~~a~~~~~a~~i~~vi 103 (282)
.+. .++.+||++||+.|.+.+
T Consensus 392 Tl~---~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 392 TSR---KIVKALRDAGATEVHMRI 412 (500)
T ss_pred HHH---HHHHHHHHhCCeEEEEEe
Confidence 333 356789999999987764
No 137
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.36 E-value=13 Score=28.71 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=49.6
Q ss_pred hCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHH
Q 023455 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (282)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~ 89 (282)
..+.+.+.+++..++..+|+..+.+| .+++.....-++.++. .-.....+.-.|++|+-|.+.. .++++++ .
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l--~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~vi~is~sg~~~~~~~~~---~ 74 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKL--QKLGRIVVISYEAGEF--FHGPLENLDPDDLVIIISYSGETRELIELL---R 74 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHH--HHHHSSEEEEEEHHHH--HTTGGGGCSTTEEEEEEESSSTTHHHHHHH---H
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHH--HHhcCcceeccchHHH--hhhhcccccccceeEeeeccccchhhhhhh---H
Confidence 34667888888888888999998888 3455555554555541 1111234555788888885543 3455544 4
Q ss_pred hccccCcce
Q 023455 90 ALPRLFVAS 98 (282)
Q Consensus 90 a~~~~~a~~ 98 (282)
.+|+.|++-
T Consensus 75 ~ak~~g~~v 83 (131)
T PF01380_consen 75 FAKERGAPV 83 (131)
T ss_dssp HHHHTTSEE
T ss_pred HHHhcCCeE
Confidence 666677543
No 138
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=56.25 E-value=69 Score=31.68 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=52.9
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEe-e-----eCCC-----ceeEEEe---cCCCCCCCeEEEEeecCCchh
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWR-N-----FADG-----WPNLYIN---SAHDIRGQHVAFLASFSSPGV 80 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~-~-----F~dG-----E~~v~v~---~~~~v~g~dV~iiqs~~~~~~ 80 (282)
..+++-.-.+...+|..+|+.+| +++...-++ + |..- +.+++.. +.+.++|+.|++|.....--.
T Consensus 284 ~D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGt 362 (475)
T PRK07631 284 ADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGT 362 (475)
T ss_pred CcEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHH
Confidence 34444333445678999999996 987542222 1 3222 1111111 245688999999987544333
Q ss_pred hHHHHHHHHhccccCcceEEEEee
Q 023455 81 IFEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 81 lmelll~~~a~~~~~a~~i~~viP 104 (282)
-+. -++.+|+++||++|.+.+.
T Consensus 363 Tl~--~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 363 TSR--RIVTMLREAGATEVHVRIS 384 (475)
T ss_pred HHH--HHHHHHHHcCCCEEEEEEe
Confidence 333 3567899999999988764
No 139
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=55.52 E-value=49 Score=28.39 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHcCCcceeeeeEeeeCCCce-----eEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCc
Q 023455 23 VECEELARKVAAQSDLITLQSINWRNFADGWP-----NLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (282)
Q Consensus 23 ~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~-----~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a 96 (282)
.|--+||..+|..|| .++.-..=+++-.-|. -+.=++ .+|.||+++|+....+. ..++|. ++.+++.|+
T Consensus 95 ~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NF-a~V~gK~cvIVDDvittG~Ti~E~---Ie~lke~g~ 169 (203)
T COG0856 95 ISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNF-ASVEGKRCVIVDDVITTGSTIKET---IEQLKEEGG 169 (203)
T ss_pred ecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeeccc-ccccCceEEEEecccccChhHHHH---HHHHHHcCC
Confidence 345689999999997 8776555444433210 122233 37889999999987554 567774 567788887
Q ss_pred ceEEE
Q 023455 97 ASFTL 101 (282)
Q Consensus 97 ~~i~~ 101 (282)
+-+.+
T Consensus 170 kpv~v 174 (203)
T COG0856 170 KPVLV 174 (203)
T ss_pred CcEEE
Confidence 54433
No 140
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=55.34 E-value=31 Score=28.19 Aligned_cols=55 Identities=18% Similarity=-0.035 Sum_probs=36.8
Q ss_pred cCCCCCCeEEEEeccccch--------HHHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhc
Q 023455 225 EGNPAGCHVVIVDDLVQSG--------GTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG--------~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~ 279 (282)
..|++||-||+.....+.. ++...=.+.+.++||.-|.++.--.--+...|+++.
T Consensus 45 ~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~~~~~~~~~~~ 107 (137)
T cd04820 45 GLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRSEKIRPWERSV 107 (137)
T ss_pred CCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcccccCCHHHHh
Confidence 3589999998888776422 356677888899999988877543322222444443
No 141
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=53.53 E-value=1.1e+02 Score=25.62 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHcCCcc-----eeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCc
Q 023455 23 VECEELARKVAAQSDLIT-----LQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (282)
Q Consensus 23 ~~~~~la~~ia~~l~~~~-----~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a 96 (282)
.+.-.+|..+|..|+ .+ +.-..-.....|+... +. .+..+|+.|+||....+. ..+.+ .++.++++|+
T Consensus 63 ~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~~-~~-g~~~~g~~VlIVDDvi~TG~Tl~~---a~~~l~~~Ga 136 (173)
T TIGR00336 63 LGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGGN-IE-GELLEGDKVVVVEDVITTGTSILE---AVEIIQAAGG 136 (173)
T ss_pred cChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCCc-ee-cCCCCCCEEEEEeccccChHHHHH---HHHHHHHcCC
Confidence 456689999999995 77 3332211123354322 22 234579999999988665 44544 4466777776
Q ss_pred c
Q 023455 97 A 97 (282)
Q Consensus 97 ~ 97 (282)
+
T Consensus 137 ~ 137 (173)
T TIGR00336 137 Q 137 (173)
T ss_pred e
Confidence 4
No 142
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=52.97 E-value=17 Score=31.19 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=38.2
Q ss_pred EeecCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcc
Q 023455 222 RIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 222 ~~~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~ 268 (282)
+.+.++.+.+..+|+|-+.. |..+-++++++.|-+-+|++-||-
T Consensus 23 tYll~d~~~~~AviIDPV~e---t~~RD~qlikdLgl~LiYa~NTH~ 66 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLE---TVSRDAQLIKDLGLDLIYALNTHV 66 (237)
T ss_pred EEEeeeCCCCceEEecchhh---cccchHHHHHhcCceeeeeeccee
Confidence 34578899999999999995 567888999999999999999985
No 143
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.77 E-value=55 Score=25.96 Aligned_cols=94 Identities=10% Similarity=-0.061 Sum_probs=56.3
Q ss_pred hhhhhhhCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHH
Q 023455 5 REIKAKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQ 84 (282)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmel 84 (282)
.++-+.....+.+.+++..++...|...+.++ .+.+.+...-|.++|. .-...+.+...+++|+-|.... .--++
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl--~e~~~i~~~~~~~~e~--~hg~~~~~~~~~~vi~is~~g~-t~~~~ 78 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGPNYGTALEGALKL--KETSYIHAEAYSAGEF--KHGPIALVDEGTPVIFLAPEDR-LEEKL 78 (153)
T ss_pred HHHHHHHhccCcEEEEcCCCCHHHHHHHHHHH--HHHHhhcceeccHHHh--ccChhhhccCCCcEEEEecCCh-hHHHH
Confidence 34445556677788877777888888888887 4566666677777753 3222344555667666664332 11123
Q ss_pred HHHHHhccccCcceEEEEee
Q 023455 85 ISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 85 ll~~~a~~~~~a~~i~~viP 104 (282)
.-++..+++.++ .+.++..
T Consensus 79 ~~~~~~~~~~~~-~vi~it~ 97 (153)
T cd05009 79 ESLIKEVKARGA-KVIVITD 97 (153)
T ss_pred HHHHHHHHHcCC-EEEEEec
Confidence 345567776664 4445544
No 144
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=50.33 E-value=1.1e+02 Score=30.54 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHcCCcceeeeeEee------e--CC---CceeEEEec---CCCCCCCeEEEEeecCCchhhHHHHHHH
Q 023455 23 VECEELARKVAAQSDLITLQSINWRN------F--AD---GWPNLYINS---AHDIRGQHVAFLASFSSPGVIFEQISVI 88 (282)
Q Consensus 23 ~~~~~la~~ia~~l~~~~~~~~~~~~------F--~d---GE~~v~v~~---~~~v~g~dV~iiqs~~~~~~lmelll~~ 88 (282)
.+.-..|..+|+.+| +++...-.+. | |. -+..++++. .+.+.||.|++|.....--.-+. .++
T Consensus 311 ~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~~--~~~ 387 (510)
T PRK07847 311 ESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQR--ALV 387 (510)
T ss_pred CchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCchHHHH--HHH
Confidence 345678999999996 9875542221 1 11 111234332 44578999999987654433333 467
Q ss_pred HhccccCcceEEEEee
Q 023455 89 YALPRLFVASFTLVLP 104 (282)
Q Consensus 89 ~a~~~~~a~~i~~viP 104 (282)
..|+++|+++|.+-+-
T Consensus 388 ~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 388 RMLREAGAAEVHVRIS 403 (510)
T ss_pred HHHHHcCCCEEEEEEC
Confidence 7889999999887664
No 145
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=49.95 E-value=1.6e+02 Score=25.03 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=46.9
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCC------------ceeEEEecCCCCCCCeEEEEeecCCc-hhhH
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG------------WPNLYINSAHDIRGQHVAFLASFSSP-GVIF 82 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dG------------E~~v~v~~~~~v~g~dV~iiqs~~~~-~~lm 82 (282)
...+=.-.+.-.+|..+|..++ .++..+.-.+++.. ..+-.+......+|++|+||...-.. ..+.
T Consensus 53 D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~ 131 (187)
T PRK12560 53 DKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVI 131 (187)
T ss_pred CEEEEEccccHHHHHHHHHhhC-CCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHH
Confidence 3333333556789999999995 88755442222221 11111222234579999999987554 4453
Q ss_pred HHHHHHHhccccCcceE
Q 023455 83 EQISVIYALPRLFVASF 99 (282)
Q Consensus 83 elll~~~a~~~~~a~~i 99 (282)
+ +++.++++|+..+
T Consensus 132 ~---ai~ll~~aGa~vv 145 (187)
T PRK12560 132 A---LIKAIENSGGIVS 145 (187)
T ss_pred H---HHHHHHHCCCEEE
Confidence 3 4567777887653
No 146
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=48.88 E-value=30 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCC
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAA 259 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~ 259 (282)
+++.++++ |.+|..-..+++.|++.|-.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 46677775 78999989999999999987
No 147
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.71 E-value=67 Score=24.65 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=44.2
Q ss_pred eEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccccCc
Q 023455 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFV 96 (282)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~~~a 96 (282)
+.+++..++...|...+.+|. .++.....-++.+|... . ......+|++|+-|.+... -|++-+++.+++.|+
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~--~~~~~~~~~~~~~~~~~--~-~~~~~~~d~~I~iS~sG~t--~e~~~~~~~a~~~g~ 74 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLE--RLAGIPVEVEAASEFRY--R-RPLLDEDTLVIAISQSGET--ADTLAALRLAKEKGA 74 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHH--HhcCCceEEEehhHhhh--c-CCCCCCCcEEEEEeCCcCC--HHHHHHHHHHHHcCC
Confidence 445555556677777777772 33323333334443211 1 1235568898888865432 134556677777775
Q ss_pred ceEEEEeec
Q 023455 97 ASFTLVLPF 105 (282)
Q Consensus 97 ~~i~~viPY 105 (282)
++.++..+
T Consensus 75 -~vi~iT~~ 82 (126)
T cd05008 75 -KTVAITNV 82 (126)
T ss_pred -eEEEEECC
Confidence 45555443
No 148
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=47.42 E-value=38 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.+++++ .+|..-..++..|++.|.+.|+.
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~~~v~~ 91 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGFKNVYQ 91 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCCcceee
Confidence 567888886 47888888899999999987754
No 149
>PRK11595 DNA utilization protein GntX; Provisional
Probab=47.13 E-value=74 Score=27.88 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCcceeeeeEeeeCC--------C-c--eeE--EEecCCCCCCCeEEEEeecCCch-hhHHHHHHHHhc
Q 023455 26 EELARKVAAQSDLITLQSINWRNFAD--------G-W--PNL--YINSAHDIRGQHVAFLASFSSPG-VIFEQISVIYAL 91 (282)
Q Consensus 26 ~~la~~ia~~l~~~~~~~~~~~~F~d--------G-E--~~v--~v~~~~~v~g~dV~iiqs~~~~~-~lmelll~~~a~ 91 (282)
..+|+.++..+| +++..--+.+-.+ . | .++ ...+..++.|++|+||....+-. .+.+ .+++|
T Consensus 135 ~~la~~la~~~~-~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~Tl~~---~~~~L 210 (227)
T PRK11595 135 DLLCRPLARWLG-CDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGSTVAE---IAQLL 210 (227)
T ss_pred HHHHHHHHHHHC-CCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchHHHHH---HHHHH
Confidence 367999999995 7653211111111 0 0 000 11223568899999999876653 3433 55678
Q ss_pred cccCcceEEEE
Q 023455 92 PRLFVASFTLV 102 (282)
Q Consensus 92 ~~~~a~~i~~v 102 (282)
++.|+.+|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 88999888765
No 150
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=45.87 E-value=42 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=26.7
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
+++.++++++ +|.....++..|++.|-..|+.+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEe
Confidence 4778888854 68888899999999999877643
No 151
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=45.01 E-value=35 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCCeEEEEeccccchHH--HHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGT--LIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~T--l~~~a~~Lk~~GA~~V~v 263 (282)
+++.++++. .+|.. ...+++.|++.|-++|+.
T Consensus 49 ~~~~ivl~c---~~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYG---EGGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEe---CCCCchHHHHHHHHHHHcCccCEEE
Confidence 466788885 46643 578899999999998874
No 152
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=44.67 E-value=40 Score=25.05 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=27.4
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
+++.+++++ .+|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCCccceec
Confidence 577888884 578888889999999999888665
No 153
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=44.62 E-value=1.6e+02 Score=29.17 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHcCCcceeeeeE------eeeC--CCc---eeEEEe---cCCCCCCCeEEEEeecCCchhhHHHHHHHH
Q 023455 24 ECEELARKVAAQSDLITLQSINW------RNFA--DGW---PNLYIN---SAHDIRGQHVAFLASFSSPGVIFEQISVIY 89 (282)
Q Consensus 24 ~~~~la~~ia~~l~~~~~~~~~~------~~F~--dGE---~~v~v~---~~~~v~g~dV~iiqs~~~~~~lmelll~~~ 89 (282)
+....|..+|+.+| +++...-+ ++|- ..+ ..+++. +.+.+.|++|++|.....--.-+. -+++
T Consensus 301 s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~--~~~~ 377 (474)
T PRK06388 301 SGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMR--FIVK 377 (474)
T ss_pred CcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECcHHHHH--HHHH
Confidence 34467999999996 88743211 2221 211 113333 223567899999987654433333 4677
Q ss_pred hccccCcceEEEEee
Q 023455 90 ALPRLFVASFTLVLP 104 (282)
Q Consensus 90 a~~~~~a~~i~~viP 104 (282)
+|+++||+.|.+.+-
T Consensus 378 ~L~~aGak~V~~ri~ 392 (474)
T PRK06388 378 IMRKYGAKEVHVRIG 392 (474)
T ss_pred HHHHcCCCEEEEEeC
Confidence 889999999887654
No 154
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.09 E-value=69 Score=24.57 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=51.2
Q ss_pred hhhCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHH
Q 023455 9 AKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVI 88 (282)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~ 88 (282)
....+.+.+.+++...+..+|...+..|. .++. ...-.++.+. . ......+...|.+|+-|..... .+++-++
T Consensus 8 ~~i~~~~~i~i~g~g~s~~~a~~~~~~l~--~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~i~iS~~g~~--~~~~~~~ 80 (139)
T cd05013 8 DLLAKARRIYIFGVGSSGLVAEYLAYKLL--RLGK-PVVLLSDPHL-Q-LMSAANLTPGDVVIAISFSGET--KETVEAA 80 (139)
T ss_pred HHHHhCCEEEEEEcCchHHHHHHHHHHHH--HcCC-ceEEecCHHH-H-HHHHHcCCCCCEEEEEeCCCCC--HHHHHHH
Confidence 34445677888888788889999988883 3433 3334455542 1 1111233446788887765432 2334455
Q ss_pred HhccccCcceEEEEee
Q 023455 89 YALPRLFVASFTLVLP 104 (282)
Q Consensus 89 ~a~~~~~a~~i~~viP 104 (282)
+.+++.|+ ++.++..
T Consensus 81 ~~a~~~g~-~iv~iT~ 95 (139)
T cd05013 81 EIAKERGA-KVIAITD 95 (139)
T ss_pred HHHHHcCC-eEEEEcC
Confidence 67777775 4555544
No 155
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=43.73 E-value=51 Score=27.08 Aligned_cols=42 Identities=29% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEeccccc-------hH-------HHHHHHHHHHHCCCCEEEEEEEc
Q 023455 226 GNPAGCHVVIVDDLVQS-------GG-------TLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~T-------G~-------Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
.|++||-|++..+-++. |+ ++..=.+...++||.-|.++..-
T Consensus 44 ~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 44 LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 48999999998765521 11 57777888999999998887643
No 156
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=41.26 E-value=87 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=26.7
Q ss_pred ceEEEecCCCHHHHHHHHHHc--CCcceeeeeEeeeCCC
Q 023455 16 QVHLFYCVECEELARKVAAQS--DLITLQSINWRNFADG 52 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l--~~~~~~~~~~~~F~dG 52 (282)
...++++++...|+++|.+.| | +++.---.-.|..+
T Consensus 5 ~Yr~lt~~d~~~fc~rVt~aL~~G-W~l~GsP~~t~~~~ 42 (54)
T PF08410_consen 5 HYRVLTGPDDSAFCHRVTEALNEG-WQLYGSPTYTFDGG 42 (54)
T ss_pred eeEEEECCChHHHHHHHHHHHHcC-CEecCCceEEECCC
Confidence 477899999999999999988 4 55544444555543
No 157
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.96 E-value=1.5e+02 Score=22.68 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=45.0
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcccc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~ 94 (282)
.+.+++..++..+|+.++..|. .++. ...-..++|. +. .....+.-+|++|+-|.+.. .++++ ++..+|+.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~--~~g~-~~~~~~~~~~-~~-~~~~~~~~~d~vi~iS~sG~t~~~~~---~~~~a~~~ 73 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLS--STGT-PAFFLHPTEA-LH-GDLGMVTPGDVVIAISNSGETDELLN---LLPHLKRR 73 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhh--cCCC-ceEEcccchh-hc-cccCcCCCCCEEEEEeCCCCCHHHHH---HHHHHHHC
Confidence 3567777778888998888873 2332 2223355542 22 22234556789888887653 34544 44566777
Q ss_pred CcceEEEE
Q 023455 95 FVASFTLV 102 (282)
Q Consensus 95 ~a~~i~~v 102 (282)
|++ +.++
T Consensus 74 g~~-vi~i 80 (128)
T cd05014 74 GAP-IIAI 80 (128)
T ss_pred CCe-EEEE
Confidence 754 4444
No 158
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=40.72 E-value=48 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKT 262 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~ 262 (282)
+++.+++ +|.+|.....++..|++.|...|+
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~ 83 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAY 83 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEE
Confidence 4566666 578999889999999999988654
No 159
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=39.98 E-value=60 Score=29.51 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
+++||+|+|+ =+|++-..++..|.+.|+++|+++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4688998866 6899999999999999999998874
No 160
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=39.98 E-value=59 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++++++. ++|.....++..|++.|- +|..
T Consensus 51 ~~~vvl~c---~~g~~a~~~a~~L~~~G~-~v~~ 80 (90)
T cd01524 51 DKEIIVYC---AVGLRGYIAARILTQNGF-KVKN 80 (90)
T ss_pred CCcEEEEc---CCChhHHHHHHHHHHCCC-CEEE
Confidence 56778874 468888889999999998 5543
No 161
>PLN02962 hydroxyacylglutathione hydrolase
Probab=38.76 E-value=49 Score=29.67 Aligned_cols=42 Identities=7% Similarity=-0.107 Sum_probs=30.1
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccCC
Q 023455 228 PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGS 272 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~ 272 (282)
..++.++|||--- .......+.+++.|.+-..++.||+=+..
T Consensus 33 ~~~~~avlIDP~~---~~~~~~l~~l~~~g~~i~~Il~TH~H~DH 74 (251)
T PLN02962 33 HPDKPALLIDPVD---KTVDRDLSLVKELGLKLIYAMNTHVHADH 74 (251)
T ss_pred CCCCEEEEECCCC---CcHHHHHHHHHHCCCeeEEEEcCCCCchh
Confidence 3467899999421 23445567888899888899999986543
No 162
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=38.23 E-value=1e+02 Score=27.36 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEec-CCCCCCCeEEEEeecCC
Q 023455 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS-AHDIRGQHVAFLASFSS 77 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~-~~~v~g~dV~iiqs~~~ 77 (282)
..+++.|++|+-+..+++++.+.+. +++ ++... =.++. ..-..|.+|++++....
T Consensus 153 ~~~nlILVGGPvaN~~t~~l~~~~~-i~i--------~~~~~-gvi~~~~~~~n~~~VivvAG~Dr 208 (222)
T PF05124_consen 153 IDKNLILVGGPVANKLTKELNDEFP-IKI--------PGENP-GVIQVIKNPFNGYDVIVVAGSDR 208 (222)
T ss_pred CCCCEEEECCchHHHHHHHHHhcCc-ccc--------cCCCc-eEEEEEecCCCCCEEEEEeCCCH
Confidence 5689999999999999999999884 654 32111 12221 12223889999987543
No 163
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=37.81 E-value=2e+02 Score=25.00 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHcCCcceeeeeEeeeCCCcee-EEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCcc
Q 023455 24 ECEELARKVAAQSDLITLQSINWRNFADGWPN-LYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVA 97 (282)
Q Consensus 24 ~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~-v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a~ 97 (282)
+.-.+|..+|..++ .++....=..--.|+.. +.+. ....+|++|+||...-+. ..+.+ .+++++++|++
T Consensus 77 ~Gi~~A~~vA~~l~-~p~~~~RK~~K~~G~~~~~~~~-g~~~~g~~VlIVDDViTTG~Ti~~---a~~~L~~~G~~ 147 (206)
T PRK13809 77 TALTLATSISLKYN-IPMVLRRKELKNVDPSDAIKVE-GLFTPGQTCLVINDMVSSGKSIIE---TAVALEEEGLV 147 (206)
T ss_pred ccHHHHHHHHHHhC-CCEEEEeCCCCCCCCcCEEEEc-cccCCCCEEEEEEeccccCHHHHH---HHHHHHHCCCE
Confidence 35689999999995 88765543222234432 2222 123578999999987544 45544 34566667765
No 164
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=37.18 E-value=2.5e+02 Score=23.54 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=47.1
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEee--eCCCce------------eEE-Ee--cCCCCCCCeEEEEeecCCc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRN--FADGWP------------NLY-IN--SAHDIRGQHVAFLASFSSP 78 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~--F~dGE~------------~v~-v~--~~~~v~g~dV~iiqs~~~~ 78 (282)
..++-...+.-.+|..+|..|| .++.-+.-.+ +.+++. +.. .+ ....++|++|+||....+.
T Consensus 54 d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT 132 (178)
T PRK07322 54 DVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVST 132 (178)
T ss_pred CEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccc
Confidence 4444344567789999999995 8865432221 112210 011 00 1124679999999987665
Q ss_pred h-hhHHHHHHHHhccccCcceEE
Q 023455 79 G-VIFEQISVIYALPRLFVASFT 100 (282)
Q Consensus 79 ~-~lmelll~~~a~~~~~a~~i~ 100 (282)
- .+. -+++.|+++|++.+.
T Consensus 133 G~Tl~---aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 133 GGTLT---ALERLVERAGGQVVA 152 (178)
T ss_pred cHHHH---HHHHHHHHcCCEEEE
Confidence 3 343 355567888887544
No 165
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=36.22 E-value=69 Score=23.69 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.+++++ ++|.+...++..|+..|-..|+.
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~ 95 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVCI 95 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEEE
Confidence 367778865 57777788889999999998864
No 166
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=35.57 E-value=3.4e+02 Score=26.54 Aligned_cols=106 Identities=10% Similarity=0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCcceeeee--Eeee--CCCcee-EEEecCCCCCCCeEEEEee--cCCchhhHHHHHHHHhccccCcceEE
Q 023455 28 LARKVAAQSDLITLQSIN--WRNF--ADGWPN-LYINSAHDIRGQHVAFLAS--FSSPGVIFEQISVIYALPRLFVASFT 100 (282)
Q Consensus 28 la~~ia~~l~~~~~~~~~--~~~F--~dGE~~-v~v~~~~~v~g~dV~iiqs--~~~~~~lmelll~~~a~~~~~a~~i~ 100 (282)
.|-.++..+| +++..+. +.+| +.|-.+ ++.++ .+..+.||.. .++|+.+...|-.+..+......+++
T Consensus 298 aAia~a~~lG-i~~~~i~~~l~~~~~~~gR~~~~r~~~----~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i 372 (479)
T PRK14093 298 AVLAAAELAG-ADLALAALALSQVQPAAGRGVRHTLEV----GGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRI 372 (479)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHhCCCcCCcceEEEeec----CCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEE
Confidence 3555677786 8765554 5666 444211 22221 1334566764 34577776666655544211123445
Q ss_pred EEe-ec-CCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCch
Q 023455 101 LVL-PF-FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHAL 151 (282)
Q Consensus 101 ~vi-PY-~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~ 151 (282)
+|+ |- --|+|..+. -+.+++.+.. .++|.|+.+..++.
T Consensus 373 ~V~G~m~elg~~~~~~--------h~~~~~~~~~-----~~~d~v~~~G~~~~ 412 (479)
T PRK14093 373 AVLGDMLELGPRGPEL--------HRGLAEAIRA-----NAIDLVFCCGPLMR 412 (479)
T ss_pred EEECChHHcCcHHHHH--------HHHHHHHHHH-----cCCCEEEEEchhHH
Confidence 554 43 235553332 2467777764 36899999986553
No 167
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=35.56 E-value=41 Score=24.69 Aligned_cols=32 Identities=19% Similarity=-0.027 Sum_probs=25.6
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.+++++ .+|.....++..|++.|...|+.
T Consensus 60 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYC---ASGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEc---CCCCcHHHHHHHHHHcChHHhEe
Confidence 467888886 46777788999999999887764
No 168
>PRK15482 transcriptional regulator MurR; Provisional
Probab=34.42 E-value=81 Score=28.39 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=50.2
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHh
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a 90 (282)
...+.+.+++..++..+|..++..|. .++. .+.-+.|+.. .......+...||+|+-|.+.. .++++ +++.
T Consensus 133 ~~A~~I~i~G~G~S~~~A~~l~~~l~--~~g~-~~~~~~d~~~--~~~~~~~~~~~Dv~i~iS~sg~t~~~~~---~~~~ 204 (285)
T PRK15482 133 SKAPFIQITGLGGSALVGRDLSFKLM--KIGY-RVACEADTHV--QATVSQALKKGDVQIAISYSGSKKEIVL---CAEA 204 (285)
T ss_pred HhCCeeEEEEeChhHHHHHHHHHHHH--hCCC-eeEEeccHhH--HHHHHhcCCCCCEEEEEeCCCCCHHHHH---HHHH
Confidence 35567888888888899999988873 2332 2222345421 1112234556799999887654 34444 4556
Q ss_pred ccccCcceEEEEe
Q 023455 91 LPRLFVASFTLVL 103 (282)
Q Consensus 91 ~~~~~a~~i~~vi 103 (282)
+++.|++ ++++.
T Consensus 205 a~~~g~~-iI~IT 216 (285)
T PRK15482 205 ARKQGAT-VIAIT 216 (285)
T ss_pred HHHCCCE-EEEEe
Confidence 7777754 55544
No 169
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=34.24 E-value=92 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=26.3
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.++++ |.+|.....++..|++.|-..|+.
T Consensus 57 ~~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 57 KNDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 34566666 778999999999999999998865
No 170
>PLN02160 thiosulfate sulfurtransferase
Probab=33.91 E-value=70 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
++++++++ |.+|.+-..++..|++.|.+.|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 45667776 6899999999999999999887543
No 171
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=33.86 E-value=41 Score=28.50 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEeccccchHHHHHHH-HHHHHCCCCEEEEEEEcc
Q 023455 234 VIVDDLVQSGGTLIECQ-KVLAAHGAAKKTWRMLLP 268 (282)
Q Consensus 234 lIVDDIi~TG~Tl~~~a-~~Lk~~GA~~V~v~~tH~ 268 (282)
+||||++.++..+.++. +.|. | ..|..+-+|+
T Consensus 86 VIvD~v~~~~~~l~d~l~~~L~--~-~~vl~VgV~C 118 (174)
T PF07931_consen 86 VIVDDVFLGPRWLQDCLRRLLA--G-LPVLFVGVRC 118 (174)
T ss_dssp EEEEE--TTTHHHHHHHHHHHT--T-S-EEEEEEE-
T ss_pred EEEecCccCcHHHHHHHHHHhC--C-CceEEEEEEC
Confidence 78899999998878777 5553 3 4444444444
No 172
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=33.78 E-value=95 Score=31.31 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.3
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP 78 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~ 78 (282)
+..+++.++.|+-...|.+++...++ +++. .-+.|+ ...+..-..|.+|+|+....+.
T Consensus 501 ~~~~nlILVGGPv~N~ltk~l~~~~~-i~i~-----n~~p~~---~~~~~~~~ng~~vlvvAG~dr~ 558 (571)
T TIGR01564 501 NADKNLILVGGPVANKLTKELADAGK-VPKT-----ESSPAT---YAEKCGAANGYDVLVVAGGDRE 558 (571)
T ss_pred cCCCCEEEECCcchhHHHHHHHhcCc-eecc-----CCCcce---eeeeccccCCceEEEEeCCChH
Confidence 46799999999999999999998874 6544 455564 2233345668999999876554
No 173
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=33.77 E-value=86 Score=29.60 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=31.2
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
.+++.||+|+|| -+|.+-..+++.|.+.|+++|.++
T Consensus 169 ~~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 169 RQKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred hCCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEE
Confidence 367899999986 489999999999999999888776
No 174
>PRK05320 rhodanese superfamily protein; Provisional
Probab=33.66 E-value=76 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=28.7
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEE
Q 023455 228 PAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKT 262 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~ 262 (282)
+++|.++++ |++|..-..++..|++.|-+.|+
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~ 204 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVY 204 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceE
Confidence 478888888 89999999999999999999886
No 175
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=32.33 E-value=88 Score=23.51 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=24.4
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCE-EE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAK-KT 262 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~-V~ 262 (282)
+++.++++ |.+|..-..++..|++.|-+. |+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~ 96 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVA 96 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCccee
Confidence 45677777 678887777899999999876 54
No 176
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=32.00 E-value=1.9e+02 Score=26.93 Aligned_cols=98 Identities=6% Similarity=0.044 Sum_probs=57.4
Q ss_pred hhhCCCCceEEEecCC-CHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHH
Q 023455 9 AKKSQKKQVHLFYCVE-CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQIS 86 (282)
Q Consensus 9 ~~~~~~~~~~i~~~~~-~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll 86 (282)
.+.....+..+.|-.. --.=+..+|..|. .....+.-.+=.--|...+..+-.+|+|+-++++..+.+. ..+.+
T Consensus 157 ~~~~~~~~~vivSPdaGgaKR~~s~ad~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~--- 232 (316)
T KOG1448|consen 157 ENIPDSENAVIVSPDAGGAKRVTSLADRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIK--- 232 (316)
T ss_pred hhCCCccceEEECCCcchhhhhHHHHHhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHHH---
Confidence 3334566666665433 2344666777774 5443332222222233322333469999999999988543 34432
Q ss_pred HHHhccccCcceEEEEeecCCCCC
Q 023455 87 VIYALPRLFVASFTLVLPFFPTGS 110 (282)
Q Consensus 87 ~~~a~~~~~a~~i~~viPY~~YsR 110 (282)
..+-|.+.||++|.++.+..=++.
T Consensus 233 aa~~L~~~GA~kV~a~~THgVfs~ 256 (316)
T KOG1448|consen 233 AADKLLEHGAKKVYAIVTHGVFSG 256 (316)
T ss_pred HHHHHHhcCCceEEEEEcceeccc
Confidence 344556689999999998876654
No 177
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=31.46 E-value=1.6e+02 Score=26.63 Aligned_cols=114 Identities=14% Similarity=0.060 Sum_probs=63.3
Q ss_pred hhhhhhhC-CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCC-------CceeEEEecCCCCCCCeEEEEeecC
Q 023455 5 REIKAKKS-QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-------GWPNLYINSAHDIRGQHVAFLASFS 76 (282)
Q Consensus 5 ~~~~~~~~-~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~d-------GE~~v~v~~~~~v~g~dV~iiqs~~ 76 (282)
..+..+.. .+..+.|+.||.=-.|++.+.... .+++++ +-.||. |. +.. ..+.|++|+++++..
T Consensus 11 ~~i~~~~~~~~~~i~iI~GsGl~~~~~~~~~~~-~~~y~~--ip~f~~~~v~gh~~~--~~~---G~l~g~~Vv~~~g~~ 82 (272)
T PRK08202 11 AFIREKTGAFKPEIGLILGSGLGALADEIENAV-VIPYAD--IPGFPVSTVEGHAGE--LVL---GRLGGKPVLAMQGRF 82 (272)
T ss_pred HHHHHhcCCCCCCEEEEeCCchhHHHHHhcCcE-EEeccc--CCCCCCCCCcCCCce--EEE---EEECCEEEEEEccCC
Confidence 34555555 667899999998777766553322 122222 234553 53 333 245689999999765
Q ss_pred C---chhhHHHHHHHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHH
Q 023455 77 S---PGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARI 129 (282)
Q Consensus 77 ~---~~~lmelll~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~l 129 (282)
+ +...-+.-..+.+++..|++.|...--=-+- + ..+++|+.+-...+.++
T Consensus 83 H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL-~--~~l~~GDiVi~~d~i~~ 135 (272)
T PRK08202 83 HYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGL-N--PDFGPGDLMLISDHINL 135 (272)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCEEEEecccccC-C--CCCCCCCEEEEchhhhh
Confidence 2 1111122345667888888887665332222 2 22455666655555444
No 178
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=31.18 E-value=1e+02 Score=28.36 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
.+++|++++|+ =.||+-..++-.|++.|+++|.++-
T Consensus 122 ~~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 122 VDVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred cccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 35678999976 5999999999999999999998873
No 179
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=31.02 E-value=89 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.2
Q ss_pred hhhhhhhhCCCC--ceEEEecCCCHHHHHHHHHHcCCcc
Q 023455 4 KREIKAKKSQKK--QVHLFYCVECEELARKVAAQSDLIT 40 (282)
Q Consensus 4 ~~~~~~~~~~~~--~~~i~~~~~~~~la~~ia~~l~~~~ 40 (282)
+.+++++..+.+ .+.+++..-+.. |.+.|+.|| ++
T Consensus 34 k~~lYek~~grk~~r~ivVtp~id~~-a~~~A~~LG-Ie 70 (70)
T PF07788_consen 34 KAELYEKVHGRKVDRLIVVTPYIDDR-AKEMAEELG-IE 70 (70)
T ss_pred HHHHHHHHHCCCcceEEEEEeecCHH-HHHHHHHhC-CC
Confidence 567788777665 566666655666 999999997 63
No 180
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=31.01 E-value=72 Score=24.68 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.0
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCC-CEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGA-AKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA-~~V~v~ 264 (282)
+++.++++ |.+|.....+++.|++.|- ..|+.+
T Consensus 71 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~~v~~l 104 (122)
T cd01526 71 KDSPIYVV---CRRGNDSQTAVRKLKELGLERFVRDI 104 (122)
T ss_pred CCCcEEEE---CCCCCcHHHHHHHHHHcCCccceeee
Confidence 46778887 4688888889999999999 666544
No 181
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=30.87 E-value=2.9e+02 Score=23.88 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=40.0
Q ss_pred eHHHHHHHHhcCCCCCCCCCEEEEEeCCchhh-hcccCCCCcccccchHHHHHHHHhcCCCCCCceEeecCCchhHHHHh
Q 023455 122 TAFTMARILSNIPTSRGGPTSLVIYDIHALQE-RFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHK 200 (282)
Q Consensus 122 sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~-~gff~~~v~~l~~~~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~ 200 (282)
..-.+|+.++. .|++.++.+|+..... .+. | .+ +.+.+.+. .+.++.++-.......+..
T Consensus 31 dp~~~a~~~~~-----~g~~~i~i~dl~~~~~~~~~-n----------~~-~~~~i~~~--~~~pv~~~ggi~~~~d~~~ 91 (232)
T TIGR03572 31 DPVNAARIYNA-----KGADELIVLDIDASKRGREP-L----------FE-LISNLAEE--CFMPLTVGGGIRSLEDAKK 91 (232)
T ss_pred CHHHHHHHHHH-----cCCCEEEEEeCCCcccCCCC-C----------HH-HHHHHHHh--CCCCEEEECCCCCHHHHHH
Confidence 44567888875 4899999999987532 222 1 12 23333332 2456777665556665555
Q ss_pred hhc-CCCEEEE
Q 023455 201 MLD-HFPTVVC 210 (282)
Q Consensus 201 ~a~-~~~~~~~ 210 (282)
+.. +++...+
T Consensus 92 ~~~~G~~~vil 102 (232)
T TIGR03572 92 LLSLGADKVSI 102 (232)
T ss_pred HHHcCCCEEEE
Confidence 432 4544433
No 182
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=30.74 E-value=1.4e+02 Score=26.63 Aligned_cols=102 Identities=9% Similarity=-0.049 Sum_probs=61.0
Q ss_pred eEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeC-------CCceeEEEecCCCCCCCeEEEEeec---CCchhhHHHHH
Q 023455 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------DGWPNLYINSAHDIRGQHVAFLASF---SSPGVIFEQIS 86 (282)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~-------dGE~~v~v~~~~~v~g~dV~iiqs~---~~~~~lmelll 86 (282)
+.|+.||.=..+++.+.+.. .+++++ +-.|| .|+ +.+ ..+.|+.|++++.- +++..+-+.-.
T Consensus 2 i~iI~GSGl~~~~~~~~~~~-~ipY~~--ip~fp~~tv~gH~g~--l~~---G~l~g~~V~~l~Gr~H~yeg~~~~~v~~ 73 (237)
T TIGR01698 2 MAIVLGSGWGGAVEALGEPV-ELPYAE--IPGFPAPTVSGHAGE--LIR---VRIGDGPVLVLGGRTHAYEGGDARAVVH 73 (237)
T ss_pred EEEEEeCCHHHHHHhhcCce-Eeeccc--CCCCCCCcccCccce--EEE---EEECCEEEEEEcCCCcccCCCcHHHhHH
Confidence 45777888667777775544 244433 44566 352 233 25568999999843 23445555678
Q ss_pred HHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHHHHHH
Q 023455 87 VIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARI 129 (282)
Q Consensus 87 ~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~a~l 129 (282)
.+.+++..|++++.+.--==+- + ..+++|+.+..+.+-++
T Consensus 74 ~i~al~~lGv~~ii~tna~Gsl-~--~~~~pGdlv~~~D~I~~ 113 (237)
T TIGR01698 74 PVRTARATGAETLILTNAAGGL-R--QDWGPGTPVLISDHINL 113 (237)
T ss_pred HHHHHHHcCCCEEEEEcccccC-C--CCCCCCCEEeechhccc
Confidence 8999999999988765322111 2 23566776655544444
No 183
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=30.73 E-value=95 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=26.8
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
+++++++++ .+|.....++..|+..|-..|+.+
T Consensus 77 ~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~~l 109 (118)
T cd01449 77 PDKPVIVYC---GSGVTACVLLLALELLGYKNVRLY 109 (118)
T ss_pred CCCCEEEEC---CcHHHHHHHHHHHHHcCCCCeeee
Confidence 688899985 567778889999999998877654
No 184
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=30.62 E-value=1e+02 Score=22.50 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKT 262 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~ 262 (282)
+++.+++++ .+|.....++..|+..|-+ |+
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~-v~ 84 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE-VY 84 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE-EE
Confidence 467778774 5788888889999999987 54
No 185
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.45 E-value=28 Score=31.07 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=54.2
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEE---------------ecCCCCCCCeEEEEeecCC--
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYI---------------NSAHDIRGQHVAFLASFSS-- 77 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v---------------~~~~~v~g~dV~iiqs~~~-- 77 (282)
..+.++.-++|..+-.+..+.++ -+=..+...|+|-.. .+.. .+..+ .+-||+.+..++.
T Consensus 8 ~riGlIvpssn~t~E~e~~~~~~-p~~v~~h~sRi~~~~-~vt~e~L~~m~~~l~~aa~~ll~~-a~~dvi~~~cTsgs~ 84 (239)
T TIGR02990 8 KRIGLVILATDHTSERDFARMVA-SDRIGVYVNRIPYAN-PTTPENLRKMQPRLTEAAALILPD-EELDVVAYSCTSASV 84 (239)
T ss_pred ceEEEEECCCCCchHHHHHHHhC-cCCeEEEEeceeCCC-CCCHHHHHHHhhhHHHHHHHhcCC-CCCCEEEEccchhhe
Confidence 45667777888877777777762 222455666675431 0100 01111 1357777766543
Q ss_pred ---chhhHHHH--------------HHHHhccccCcceEEEEeecCCC
Q 023455 78 ---PGVIFEQI--------------SVIYALPRLFVASFTLVLPFFPT 108 (282)
Q Consensus 78 ---~~~lmell--------------l~~~a~~~~~a~~i~~viPY~~Y 108 (282)
++.+.+.+ -+++||+..|++||.++.||.+.
T Consensus 85 ~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~ 132 (239)
T TIGR02990 85 VIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTPE 132 (239)
T ss_pred ecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcHH
Confidence 23333333 35678898999999999999865
No 186
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=29.74 E-value=76 Score=32.71 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCCCeEEEE-----eccccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 023455 228 PAGCHVVIV-----DDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTF 270 (282)
Q Consensus 228 v~gk~vlIV-----DDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~f 270 (282)
...++||+| ||++.-|||+. .|.++|.....++.|-|--
T Consensus 367 ~~~~rvLv~spHPDDevi~~GGTla----rl~~~G~~V~vv~~TsG~~ 410 (652)
T PRK02122 367 PYPKRVIIFSPHPDDDVISMGGTFR----RLVEQGHDVHVAYQTSGNI 410 (652)
T ss_pred cCCceEEEEEeCCCchHhhhHHHHH----HHHHCCCcEEEEEecCCcc
Confidence 445788887 88999999995 5667899888888898763
No 187
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=29.32 E-value=95 Score=27.40 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred CceEEEec-CCCHHHHHHHHHHcCCcceeeeeEeee--CC-----------CceeEEE----------------------
Q 023455 15 KQVHLFYC-VECEELARKVAAQSDLITLQSINWRNF--AD-----------GWPNLYI---------------------- 58 (282)
Q Consensus 15 ~~~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F--~d-----------GE~~v~v---------------------- 58 (282)
++..+.+. .+--..|-+||+.|| .++.-+-+++- |+ |-..+..
T Consensus 25 ~~~iVlaLpRGGvpva~evA~~lg-a~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~i~~~~i~~~~~~e~ 103 (220)
T COG1926 25 KDVIVLALPRGGVPVAFEVAQALG-APLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLGIDDAYIEAAAARER 103 (220)
T ss_pred CCcEEEEecCCCchHHHHHHHHhC-CCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhccCCHHHHHHHHHHHH
Confidence 44444444 456789999999996 88776666552 22 1100100
Q ss_pred -------------ecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHH
Q 023455 59 -------------NSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFT 125 (282)
Q Consensus 59 -------------~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~ 125 (282)
+-.-+.+|++|+|+.....-..-|- ..+.+||..+++.|.+..|-.| ..
T Consensus 104 ~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~--aAi~~~r~~~~~~IviAVPV~p----------------~~ 165 (220)
T COG1926 104 KELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMK--AAVRALRAKGPKEIVIAVPVAP----------------ED 165 (220)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHH--HHHHHHHhcCCceEEEEcccCC----------------HH
Confidence 1133677899999987654433333 4678999999999999988665 34
Q ss_pred HHHHHhcCCCCCCCCCEEEEEeCCch--hhhcccCCCCcccccchHHHHHHHHhcC
Q 023455 126 MARILSNIPTSRGGPTSLVIYDIHAL--QERFYFSDHVLPLFETGIPLLKQRLHQL 179 (282)
Q Consensus 126 ~a~lL~~~~~~~~g~d~Ii~vdlH~~--~~~gff~~~v~~l~~~~~~~la~~l~~~ 179 (282)
.++.|.+ -+|.|+++..-.. ....||. .+..+ ...+..++|.+.
T Consensus 166 a~~~l~s------~~D~vvc~~~P~~F~AVg~~Y~-dF~q~---sdeEV~~lL~~a 211 (220)
T COG1926 166 AAAELES------EADEVVCLYMPAPFEAVGEFYR-DFRQV---SDEEVRALLRRA 211 (220)
T ss_pred HHHHHHh------hcCeEEEEcCCccHHHHHHHHH-HHhhc---CHHHHHHHHHhc
Confidence 5566765 3689999875432 1222222 11111 456677777664
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=28.94 E-value=1.3e+02 Score=25.32 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEeccccchHHHHH-HHHHHHHCCCCEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIE-CQKVLAAHGAAKKTW 263 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~-~a~~Lk~~GA~~V~v 263 (282)
++++||+|+||= .|++... +++.|.+.|+ +|.+
T Consensus 40 ~~l~gk~vlViG----~G~~~G~~~a~~L~~~g~-~V~v 73 (168)
T cd01080 40 IDLAGKKVVVVG----RSNIVGKPLAALLLNRNA-TVTV 73 (168)
T ss_pred CCCCCCEEEEEC----CcHHHHHHHHHHHhhCCC-EEEE
Confidence 578999999873 5666566 8999999998 4443
No 189
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=28.73 E-value=1.3e+02 Score=22.93 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
+++.++++ |++|.....++..|.+.|-..|+.
T Consensus 59 ~~~~IVly---C~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 59 KNDTVKLY---CNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred CCCeEEEE---eCCChHHHHHHHHHHHcCCCeEEe
Confidence 35667777 568989899999999999988754
No 190
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=28.51 E-value=53 Score=29.82 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCCceEEEecCCC---HHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEE--eec---CCchhhHH
Q 023455 12 SQKKQVHLFYCVEC---EELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL--ASF---SSPGVIFE 83 (282)
Q Consensus 12 ~~~~~~~i~~~~~~---~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~ii--qs~---~~~~~lme 83 (282)
|.+..+.|+.||+- ..|+..+-... .+++++ |.|+ +.+ ..+.|++|+++ |.- ++|..+ .
T Consensus 5 ~~~~~igiIgGSGl~~~~~l~~~~~~~~-~tpyg~------p~~~--l~~---g~l~g~~v~~l~RhGr~H~y~~~~i-~ 71 (267)
T PRK08564 5 NEKASIGIIGGSGLYDPGIFENSKEVKV-YTPYGE------PSDN--III---GEIEGVEVAFLPRHGRGHRIPPHKI-N 71 (267)
T ss_pred CCCceEEEEecCCCCCCcccccceeeeE-EcCCCC------CccC--EEE---EEECCEEEEEEeCCCCCcccCCccC-c
Confidence 45667889999886 34444333223 133332 4564 233 24568999999 432 233332 2
Q ss_pred HHHHHHhccccCcceEEEEeecCCCCCccccccCCCeeeHHHH
Q 023455 84 QISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTM 126 (282)
Q Consensus 84 lll~~~a~~~~~a~~i~~viPY~~YsRqdr~~~~g~~~sa~~~ 126 (282)
.-.-+.+++.+|++.+.++----+- +.+ +++|+.+-...+
T Consensus 72 ~~a~i~aLk~LGvk~iI~tnavGsl-~~~--~~pGDlVv~~D~ 111 (267)
T PRK08564 72 YRANIWALKELGVEWVIAVSAVGSL-RED--YKPGDFVIPDQF 111 (267)
T ss_pred chHHHHHHHHCCCcEEEEecccccc-CCC--CCCCCEEeehhh
Confidence 3466788999999988776433332 222 566776644444
No 191
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=28.40 E-value=1.3e+02 Score=30.46 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCeEEEEeecCCchhhHHHHHHHHhccccCcceEEEEee
Q 023455 66 GQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 66 g~dV~iiqs~~~~~~lmelll~~~a~~~~~a~~i~~viP 104 (282)
++.+.|+. -++-|-+-...++..++++.|+..+...+|
T Consensus 69 ~e~I~I~g-DyD~DGitstail~~~L~~~g~~~~~~~IP 106 (575)
T PRK11070 69 GTRIIVVG-DFDADGATSTALSVLALRSLGCSNVDYLVP 106 (575)
T ss_pred CCEEEEEE-ecCccHHHHHHHHHHHHHHcCCCceEEEeC
Confidence 45565554 455566666777888999999866766666
No 192
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.33 E-value=1.7e+02 Score=24.88 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=43.5
Q ss_pred hhhhhhCCCCceEEEecCC-CHHHHHHHHHHcCCc-----ceeeeeEeeeCCCceeEE-----E---ecCCCCCCCeEEE
Q 023455 6 EIKAKKSQKKQVHLFYCVE-CEELARKVAAQSDLI-----TLQSINWRNFADGWPNLY-----I---NSAHDIRGQHVAF 71 (282)
Q Consensus 6 ~~~~~~~~~~~~~i~~~~~-~~~la~~ia~~l~~~-----~~~~~~~~~F~dGE~~v~-----v---~~~~~v~g~dV~i 71 (282)
|+-+++..-.++.+++-.+ --+||++|++.++.+ +++.+.+.-|-|-=.... + .++.++.|+.|++
T Consensus 22 eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VIL 101 (179)
T COG2065 22 EIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGKRVIL 101 (179)
T ss_pred HHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCcccccCCEEEE
Confidence 4555555556777766644 679999999987433 478888887777521111 0 1244567788877
Q ss_pred Eee
Q 023455 72 LAS 74 (282)
Q Consensus 72 iqs 74 (282)
+..
T Consensus 102 VDD 104 (179)
T COG2065 102 VDD 104 (179)
T ss_pred Eee
Confidence 765
No 193
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=66 Score=26.91 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=40.3
Q ss_pred CCCCeEEEEe------ccccchH--HHHHHHHHHHHCCCCEEEEEEEccccCCchhhhhcC
Q 023455 228 PAGCHVVIVD------DLVQSGG--TLIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSLS 280 (282)
Q Consensus 228 v~gk~vlIVD------DIi~TG~--Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~~ 280 (282)
.+||+|+|+- --|++-. -..+.++.+++.|...|+|+++--.|-.++|++.+.
T Consensus 35 f~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g 95 (165)
T COG0678 35 FKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQG 95 (165)
T ss_pred cCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcC
Confidence 5788888763 2233211 146788999999999999999999999999998653
No 194
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.95 E-value=1.3e+02 Score=27.10 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
+++||+|+|+ =+|++-..++..|.+.|+.+|.++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5788998877 47999999999999999888888743
No 195
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.63 E-value=1.5e+02 Score=22.91 Aligned_cols=79 Identities=8% Similarity=-0.132 Sum_probs=42.3
Q ss_pred EEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhccccCc
Q 023455 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (282)
Q Consensus 18 ~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~~a 96 (282)
.+++..++...|......+ .++......-+.+.|.. . .....+...|++|+-|.+.. .++++ .++.+|+.|+
T Consensus 3 ~i~G~G~S~~~A~~~~~~l--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~dl~I~iS~SG~t~~~~~---~~~~a~~~g~ 75 (120)
T cd05710 3 FFVGCGGSLADMYPAKYFL--KKESKLPVFVYNAAEFL-H-TGPKRLTEKSVVILASHSGNTKETVA---AAKFAKEKGA 75 (120)
T ss_pred EEEEecHHHHHHhHHHHHH--HHhcCCceEEEcHHHHh-h-cCcccCCCCcEEEEEeCCCCChHHHH---HHHHHHHcCC
Confidence 4444445555566555555 23434455556666531 1 11234555788888886643 34444 4556666775
Q ss_pred ceEEEEee
Q 023455 97 ASFTLVLP 104 (282)
Q Consensus 97 ~~i~~viP 104 (282)
.+.++..
T Consensus 76 -~vi~iT~ 82 (120)
T cd05710 76 -TVIGLTD 82 (120)
T ss_pred -eEEEEEC
Confidence 4555544
No 196
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=27.61 E-value=83 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHHCCCCEEEE
Q 023455 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
++.++++ |.+|.+...++..|++.|...|+.
T Consensus 58 ~~~ivv~---c~~g~~s~~a~~~L~~~G~~~v~~ 88 (108)
T PRK00162 58 DTPVMVM---CYHGNSSQGAAQYLLQQGFDVVYS 88 (108)
T ss_pred CCCEEEE---eCCCCCHHHHHHHHHHCCchheEE
Confidence 4555555 456777778888999999987763
No 197
>PHA01634 hypothetical protein
Probab=27.56 E-value=55 Score=26.79 Aligned_cols=33 Identities=18% Similarity=-0.001 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
.+++||+|++| |+.+-..+=...-.||++|+++
T Consensus 25 idvk~KtV~dI------GA~iGdSaiYF~l~GAK~Vva~ 57 (156)
T PHA01634 25 LNVYQRTIQIV------GADCGSSALYFLLRGASFVVQY 57 (156)
T ss_pred eeecCCEEEEe------cCCccchhhHHhhcCccEEEEe
Confidence 47899998876 5555555666667899999876
No 198
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=27.40 E-value=1.1e+02 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=23.8
Q ss_pred eEEEEeccccchHHHHHHHHHHHHC-CCCEEEEEE
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAH-GAAKKTWRM 265 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~-GA~~V~v~~ 265 (282)
.+.++||--.+-..+.++.+.|++. +.+++.++.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~ 47 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVF 47 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEE
Confidence 4667777888889999999999887 555555543
No 199
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=27.17 E-value=1.1e+02 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=26.0
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
+++.++++ |.+|.+...++..|++.|-.+|+.+
T Consensus 63 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 63 KDRPVLLL---CRSGNRSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCeEEEE---cCCCccHHHHHHHHHHCCCCeEEEC
Confidence 45677775 4678888889999999999887654
No 200
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.14 E-value=61 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCEEEEEEEccccCCchhhhhc
Q 023455 246 LIECQKVLAAHGAAKKTWRMLLPTFGSRIRARSL 279 (282)
Q Consensus 246 l~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~~~~ 279 (282)
+.+-++.|++.|...|+|++.--.|..++|.+.+
T Consensus 67 yi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~ 100 (171)
T KOG0541|consen 67 YIEKADELKSKGVDEIICVSVNDPFVMKAWAKSL 100 (171)
T ss_pred HHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhc
Confidence 5677899999999999999999999999998765
No 201
>PLN02469 hydroxyacylglutathione hydrolase
Probab=27.03 E-value=91 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=28.5
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccC
Q 023455 229 AGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFG 271 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs 271 (282)
.++.++||| .| ....+.+.+++.|..--+++.||+=+.
T Consensus 21 ~~~~~vlID----p~-~~~~il~~l~~~g~~l~~Il~TH~H~D 58 (258)
T PLN02469 21 STKDAAVVD----PV-DPEKVLQAAHEHGAKIKLVLTTHHHWD 58 (258)
T ss_pred CCCeEEEEC----CC-ChHHHHHHHHHcCCcccEEEecCCCCc
Confidence 456788888 34 356777888888987778999997543
No 202
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=26.58 E-value=1.9e+02 Score=24.14 Aligned_cols=43 Identities=23% Similarity=0.062 Sum_probs=28.8
Q ss_pred cCCCCCCeEEEEeccc---------cch------HHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 225 EGNPAGCHVVIVDDLV---------QSG------GTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi---------~TG------~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
.-||+||.|++..+-- ..| ++...=.+.+.++||.-|..+...
T Consensus 45 g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 45 GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999998884322 112 234456778889999988777543
No 203
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.55 E-value=2.1e+02 Score=25.17 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=44.5
Q ss_pred ceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHhcccc
Q 023455 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (282)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a~~~~ 94 (282)
.+.+|+..++..+|+..+.+|- .++.. +.-+.+.+. .......+...|++|+-|.+.. .+++ -++..+|+.
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~--~~g~~-~~~~~~~~~--~~~~~~~~~~~d~~i~iS~sG~t~~~~---~~~~~a~~~ 73 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFA--STGTP-SFFLHPTEA--MHGDLGMVEPNDVVLMISYSGESLELL---NLIPHLKRL 73 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHH--hcCCc-eEEeCHhHH--hhcccCCCCCCCEEEEEeCCCCCHHHH---HHHHHHHHc
Confidence 3566666677788888888772 33322 222455542 1122235566899999887653 3443 455677777
Q ss_pred CcceE
Q 023455 95 FVASF 99 (282)
Q Consensus 95 ~a~~i 99 (282)
|++-|
T Consensus 74 g~~ii 78 (268)
T TIGR00393 74 SHKII 78 (268)
T ss_pred CCcEE
Confidence 76543
No 204
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=26.32 E-value=1.4e+02 Score=21.73 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=27.4
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
..+++||-||+-..-+ ++..-++..+++||.-|.++-
T Consensus 29 ~~~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 29 GSDVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TSTCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred CccccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 3578998888832222 678888888999999988876
No 205
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=25.78 E-value=1.4e+02 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=29.4
Q ss_pred cCCCCCCeEEEEecc--------ccch------HHHHHHHHHHHHCCCCEEEEEE
Q 023455 225 EGNPAGCHVVIVDDL--------VQSG------GTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 225 ~~~v~gk~vlIVDDI--------i~TG------~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
..|++||-||+..+. ...| .|+..=++...++||.-|.++.
T Consensus 43 giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 43 GLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 358999999887663 1111 3667777888999999888774
No 206
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.60 E-value=1.4e+02 Score=26.87 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=50.6
Q ss_pred hCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHH
Q 023455 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (282)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~ 89 (282)
....+.+.+|+..++..+|..++.+|. .++ ....-++|.+. ...........|++|+-|.+.. .++ .-++.
T Consensus 137 i~~A~~I~i~G~G~S~~~A~~l~~~l~--~~g-~~~~~~~d~~~--~~~~~~~~~~~Dl~I~iS~sG~t~~~---~~~~~ 208 (292)
T PRK11337 137 FYQARQRDLYGAGGSAAIARDVQHKFL--RIG-VRCQAYDDAHI--MLMSAALLQEGDVVLVVSHSGRTSDV---IEAVE 208 (292)
T ss_pred HHcCCeEEEEEecHHHHHHHHHHHHHh--hCC-CeEEEcCCHHH--HHHHHhcCCCCCEEEEEeCCCCCHHH---HHHHH
Confidence 345577788887788888998888773 233 22334566532 1111123445899999887654 334 44666
Q ss_pred hccccCcceEEEEe
Q 023455 90 ALPRLFVASFTLVL 103 (282)
Q Consensus 90 a~~~~~a~~i~~vi 103 (282)
.+++.|+ +++++.
T Consensus 209 ~ak~~g~-~ii~IT 221 (292)
T PRK11337 209 LAKKNGA-KIICIT 221 (292)
T ss_pred HHHHCCC-eEEEEe
Confidence 7888886 455554
No 207
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.55 E-value=1.6e+02 Score=26.18 Aligned_cols=84 Identities=8% Similarity=-0.039 Sum_probs=50.7
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHh
Q 023455 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (282)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a 90 (282)
.+.+.+.+++..++..+|+.++..|. .++... .-..|.. ........+.-+||+|+-|.+.. .++++ ++..
T Consensus 126 ~~a~~I~i~G~G~s~~~A~~~~~~l~--~~g~~~-~~~~d~~--~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~---~~~~ 197 (278)
T PRK11557 126 RSARRIILTGIGASGLVAQNFAWKLM--KIGINA-VAERDMH--ALLATVQALSPDDLLLAISYSGERRELNL---AADE 197 (278)
T ss_pred hcCCeEEEEecChhHHHHHHHHHHHh--hCCCeE-EEcCChH--HHHHHHHhCCCCCEEEEEcCCCCCHHHHH---HHHH
Confidence 45678899998889999999998883 333322 2234432 11111124556899998887654 34444 4456
Q ss_pred ccccCcceEEEEee
Q 023455 91 LPRLFVASFTLVLP 104 (282)
Q Consensus 91 ~~~~~a~~i~~viP 104 (282)
+|+.|+ +|.++..
T Consensus 198 ak~~ga-~iI~IT~ 210 (278)
T PRK11557 198 ALRVGA-KVLAITG 210 (278)
T ss_pred HHHcCC-CEEEEcC
Confidence 777775 4444443
No 208
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.40 E-value=84 Score=28.34 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=29.4
Q ss_pred CeEEEEeccccchHH--HHHHHHHHHHC-CCCEEEEEEEcc
Q 023455 231 CHVVIVDDLVQSGGT--LIECQKVLAAH-GAAKKTWRMLLP 268 (282)
Q Consensus 231 k~vlIVDDIi~TG~T--l~~~a~~Lk~~-GA~~V~v~~tH~ 268 (282)
-+++|+|-+++.|-. ..+|.+.+.+. --....++++|-
T Consensus 166 pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 389999999999966 45687777665 344788889994
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=25.34 E-value=88 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=23.8
Q ss_pred ccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 238 DLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 238 DIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
|..++..-+..+.+.|+.+|+++|+.+.+
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEEC
Confidence 55556788999999999999999976653
No 210
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.21 E-value=4.6e+02 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.1
Q ss_pred eHHHHHHHHhcCCCCCCCCCEEEEEeCCch
Q 023455 122 TAFTMARILSNIPTSRGGPTSLVIYDIHAL 151 (282)
Q Consensus 122 sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~ 151 (282)
....+|+.++. .|++.++.+|+...
T Consensus 28 d~~~~a~~~~~-----~G~~~i~i~d~~~~ 52 (243)
T cd04731 28 DPVELAKRYNE-----QGADELVFLDITAS 52 (243)
T ss_pred CHHHHHHHHHH-----CCCCEEEEEcCCcc
Confidence 45578888886 48999999999874
No 211
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.04 E-value=1.2e+02 Score=26.01 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCC-chhhHHHHHHHHhc
Q 023455 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSS-PGVIFEQISVIYAL 91 (282)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~-~~~lmelll~~~a~ 91 (282)
....+.++.-+.+...++++.. +| .++. ...|.|-| .+.+.++|-|++++..... +..+-...-+++|+
T Consensus 21 ~~~~V~~l~R~~~~~~~~~l~~-~g-~~vv---~~d~~~~~-----~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDPSSDRAQQLQA-LG-AEVV---EADYDDPE-----SLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSSHHHHHHHHHH-TT-TEEE---ES-TT-HH-----HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEeccchhhhhhhhc-cc-ceEe---ecccCCHH-----HHHHHHcCCceEEeecCcchhhhhhhhhhHHHhh
Confidence 5566777776665666666544 44 4432 23344443 1235678988887766544 45566666789999
Q ss_pred cccCcceEE
Q 023455 92 PRLFVASFT 100 (282)
Q Consensus 92 ~~~~a~~i~ 100 (282)
+++|.++++
T Consensus 91 ~~agVk~~v 99 (233)
T PF05368_consen 91 KAAGVKHFV 99 (233)
T ss_dssp HHHT-SEEE
T ss_pred hccccceEE
Confidence 999987774
No 212
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=24.99 E-value=1.5e+02 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
.+++||+++|+ =+||+-..++-.|.+.|+++|+++.
T Consensus 120 ~~~~~k~vlvl----GaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 120 FDIKGKTMVLL----GAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CCcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 35788988865 4899988888889899999998885
No 213
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.92 E-value=1.1e+02 Score=25.27 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred CeEEEEeecCCchhhHHHH-HHHHhccccCcceEE-EEeecCCCCC--------ccccccCCCeeeHHHHHHHHh
Q 023455 67 QHVAFLASFSSPGVIFEQI-SVIYALPRLFVASFT-LVLPFFPTGS--------FERMEEEGDVATAFTMARILS 131 (282)
Q Consensus 67 ~dV~iiqs~~~~~~lmell-l~~~a~~~~~a~~i~-~viPY~~YsR--------qdr~~~~g~~~sa~~~a~lL~ 131 (282)
-||+.+.|++.- .++|. -++++||+.|...|. ++-+-.|..- -|+.|.+|.++ ...+..++.
T Consensus 64 v~vIgvSsl~g~--h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~-~~~~~~v~~ 135 (143)
T COG2185 64 VDVIGVSSLDGG--HLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPI-EEALSDLLT 135 (143)
T ss_pred CCEEEEEeccch--HHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCH-HHHHHHHHH
Confidence 588888887542 23333 388999999999998 4444444321 24455666555 333444443
No 214
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=24.57 E-value=57 Score=29.83 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHHHCCCCEEEEEEEccccCCc
Q 023455 241 QSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSR 273 (282)
Q Consensus 241 ~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~ 273 (282)
|.|+|-....+..++.++..+.++.+|+.|.+.
T Consensus 96 Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~ 128 (279)
T COG0287 96 DVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPE 128 (279)
T ss_pred ecccccHHHHHHHHHhccCCCeeEecCCCCCCc
Confidence 377777788888888887766999999999984
No 215
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=24.51 E-value=1.8e+02 Score=21.53 Aligned_cols=31 Identities=6% Similarity=0.096 Sum_probs=18.3
Q ss_pred eecCCchhhHHHHHHHHhccccCcceEEEEee
Q 023455 73 ASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104 (282)
Q Consensus 73 qs~~~~~~lmelll~~~a~~~~~a~~i~~viP 104 (282)
+.+...+.+.+++..+++.. .+.....++-+
T Consensus 20 rrF~~~~~L~~v~~fv~~~g-~~~~~f~L~t~ 50 (82)
T cd01773 20 IALPEQAKLLALVRHVQSKG-YPNERFELLTN 50 (82)
T ss_pred EEeCCCCcHHHHHHHHHhcC-CCCCCEEEecC
Confidence 34555567888888888743 33455555543
No 216
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.44 E-value=1.7e+02 Score=29.96 Aligned_cols=37 Identities=32% Similarity=0.534 Sum_probs=31.0
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
+..||+|+||- .|.|-.+++..+.+.|+++|.++.-+
T Consensus 465 ~~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 465 NTAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred cCCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 35789999985 88888899999899999999877654
No 217
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.34 E-value=4e+02 Score=21.90 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=48.4
Q ss_pred hhhCCCCceEEEecCCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCc-hhhHHHHHH
Q 023455 9 AKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISV 87 (282)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~ 87 (282)
+...+.+.+.+++..++..+|+.++.+|. .++ ..+.-.+|-. ......+|++|+-|.+.. .++++ +
T Consensus 28 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~--~~g-~~~~~~~~~~-------~~~~~~~D~vI~iS~sG~t~~~i~---~ 94 (179)
T cd05005 28 SAILNAKRIFVYGAGRSGLVAKAFAMRLM--HLG-LNVYVVGETT-------TPAIGPGDLLIAISGSGETSSVVN---A 94 (179)
T ss_pred HHHHhCCeEEEEecChhHHHHHHHHHHHH--hCC-CeEEEeCCCC-------CCCCCCCCEEEEEcCCCCcHHHHH---H
Confidence 33445677888888888888998888772 121 1222223321 124556899999887654 34443 4
Q ss_pred HHhccccCcceEEEEe
Q 023455 88 IYALPRLFVASFTLVL 103 (282)
Q Consensus 88 ~~a~~~~~a~~i~~vi 103 (282)
++.+++.|++ +.++.
T Consensus 95 ~~~ak~~g~~-iI~IT 109 (179)
T cd05005 95 AEKAKKAGAK-VVLIT 109 (179)
T ss_pred HHHHHHCCCe-EEEEE
Confidence 4567777764 44443
No 218
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.98 E-value=79 Score=28.03 Aligned_cols=28 Identities=7% Similarity=-0.068 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEccccC
Q 023455 244 GTLIECQKVLAAHGAAKKTWRMLLPTFG 271 (282)
Q Consensus 244 ~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs 271 (282)
-+...++.+|++.|+.+|..+=.+|+=.
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~ 162 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKH 162 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCccc
Confidence 5788899999999999999998888643
No 219
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.75 E-value=3.8e+02 Score=23.31 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=51.9
Q ss_pred ceEEEecCC--CHHHHHHHHHHcCC-cceeeeeEeeeCCCcee-EEEecCCCCCCCeEEEEeecCCc-hhhHHHHHHHHh
Q 023455 16 QVHLFYCVE--CEELARKVAAQSDL-ITLQSINWRNFADGWPN-LYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (282)
Q Consensus 16 ~~~i~~~~~--~~~la~~ia~~l~~-~~~~~~~~~~F~dGE~~-v~v~~~~~v~g~dV~iiqs~~~~-~~lmelll~~~a 90 (282)
++-++.|.. .-++|..+|..| + .+. -+..++++.+.-. -.+.. ..+.|+.|+||....+- .+++| .+++
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l-~~~~~-~~~~Rke~K~hG~~~~ieG-~~~~G~kVvvVEDViTTG~Si~e---ai~~ 134 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALAL-AHLPP-MAYVRKEAKDHGTGGLIEG-GEVKGEKVVVVEDVITTGGSILE---AVEA 134 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHh-ccCCc-EEEEeceeccCCCcceeEe-cCCCCCEEEEEEecccCCHhHHH---HHHH
Confidence 344455554 458899999888 2 112 4556666654222 22332 34489999999987554 67766 4567
Q ss_pred ccccCcc--eEEEEeecC
Q 023455 91 LPRLFVA--SFTLVLPFF 106 (282)
Q Consensus 91 ~~~~~a~--~i~~viPY~ 106 (282)
++++|+. .+.+++.|-
T Consensus 135 l~~~G~~V~gv~~ivDR~ 152 (201)
T COG0461 135 LREAGAEVVGVAVIVDRQ 152 (201)
T ss_pred HHHcCCeEEEEEEEEecc
Confidence 7788763 455666554
No 220
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=23.73 E-value=1.4e+02 Score=24.65 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=26.1
Q ss_pred CCCeEEEEeccccchH-HHHHHHHHHHHCCCCEEEEE
Q 023455 229 AGCHVVIVDDLVQSGG-TLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 229 ~gk~vlIVDDIi~TG~-Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
+++.|++++. +|. .-..++..|++.|-+.|+.+
T Consensus 115 ~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~l 148 (162)
T TIGR03865 115 KDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYWY 148 (162)
T ss_pred CCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEEe
Confidence 7889999966 565 45668899999999988754
No 221
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=23.44 E-value=4.3e+02 Score=21.89 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHcC
Q 023455 25 CEELARKVAAQSD 37 (282)
Q Consensus 25 ~~~la~~ia~~l~ 37 (282)
-..+|+.|++.|+
T Consensus 11 TkkvA~aI~~~l~ 23 (160)
T PF12641_consen 11 TKKVAEAIAEALG 23 (160)
T ss_pred HHHHHHHHHHHCC
Confidence 3589999999996
No 222
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.08 E-value=4.3e+02 Score=22.62 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEeCCchhh-hcccCCCCcccccchHHHHHHHHhcCCCCCCceEeecCCchhHHHHhh
Q 023455 123 AFTMARILSNIPTSRGGPTSLVIYDIHALQE-RFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (282)
Q Consensus 123 a~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~-~gff~~~v~~l~~~~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~ 201 (282)
.-.+|+.+++ .|+|.+..+|+..... .++ . ..+.+.+.+. .+.++.++-.......+..+
T Consensus 31 p~~~a~~~~~-----~g~d~l~v~dl~~~~~~~~~-----------~-~~~i~~i~~~--~~~pv~~~GgI~~~e~~~~~ 91 (234)
T cd04732 31 PVEVAKKWEE-----AGAKWLHVVDLDGAKGGEPV-----------N-LELIEEIVKA--VGIPVQVGGGIRSLEDIERL 91 (234)
T ss_pred HHHHHHHHHH-----cCCCEEEEECCCccccCCCC-----------C-HHHHHHHHHh--cCCCEEEeCCcCCHHHHHHH
Confidence 3368888875 3899999999876311 111 1 2234445443 23456664333334444444
Q ss_pred hc-CCCEEEEEEEee-------------CCccEEEeecCCCCCCeEEEEecc-ccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 202 LD-HFPTVVCAKVRE-------------GDKRIVRIKEGNPAGCHVVIVDDL-VQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 202 a~-~~~~~~~~k~R~-------------~~~~i~~~~~~~v~gk~vlIVDDI-i~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
.. +.+..++...-. ....+. ..-++++..++ .+.. -.+..+..+.++.+.+.|+..+.+.
T Consensus 92 ~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~--~sid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 92 LDLGVSRVIIGTAAVKNPELVKELLKEYGGERIV--VGLDAKDGKVA-TKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHcCCCEEEECchHHhChHHHHHHHHHcCCceEE--EEEEeeCCEEE-ECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 32 554333211100 000111 11222222222 2211 1245677888999999999987654
No 223
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.88 E-value=1.8e+02 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=25.3
Q ss_pred CCeEEEEeccccch-HHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 230 GCHVVIVDDLVQSG-GTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 230 gk~vlIVDDIi~TG-~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
++.++|++|.-+.+ ..+.++++.+++.|. .|+++...
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I-~v~~IgiG 145 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENI-RVSVIGLS 145 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCc-EEEEEEec
Confidence 34677778765442 356788999999885 57777653
No 224
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=22.72 E-value=1.6e+02 Score=26.94 Aligned_cols=35 Identities=29% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
+++||+++| +=+||+-..++-.|.+.|+++|+++-
T Consensus 124 ~~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 124 NAKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CcCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 467888875 46899999999999999999998874
No 225
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.66 E-value=3.7e+02 Score=25.83 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCcceeeee--EeeeCCCceeEEEecCCCCCCCeEEEEe-ec-CCchhhHHHHHHHHhccccCcceEEEEe
Q 023455 28 LARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLA-SF-SSPGVIFEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 28 la~~ia~~l~~~~~~~~~--~~~F~dGE~~v~v~~~~~v~g~dV~iiq-s~-~~~~~lmelll~~~a~~~~~a~~i~~vi 103 (282)
.|-.+|..+| ++...+. +..|..-+. |.+.-....| +.++. +- +.|+....++ ++++...-+++++|+
T Consensus 280 aAia~a~~lg-i~~~~i~~~L~~f~g~~~--R~e~v~~~~g--v~~idDs~atN~~a~~~al---~~l~~~~~~~iilI~ 351 (448)
T PRK03803 280 AALALGEAAG-LPKEAMLEVLRTFTGLPH--RCEWVREVAG--VDYYNDSKGTNVGATVAAI---EGLGAHIQGKLVLIA 351 (448)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhhCCCCCC--ceEEEEEeCC--eEEEEcCCcCCHHHHHHHH---HhhhhcCCCCEEEEE
Confidence 4666677785 7655444 566653221 4432112222 43444 32 2344554433 344322114677776
Q ss_pred ecCCCCCccccccCCCeeeHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccC--CCCcccccchHHHHHHHHhcCCC
Q 023455 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS--DHVLPLFETGIPLLKQRLHQLPD 181 (282)
Q Consensus 104 PY~~YsRqdr~~~~g~~~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~~gff~--~~v~~l~~~~~~~la~~l~~~~~ 181 (282)
.-+. + +.-+. .+.+++.. -++.++.+..+...+...+. .++... .......+++.+...
T Consensus 352 Gg~~--k-~~d~~--------~l~~~l~~------~~~~vil~G~~~~~i~~~l~~~~~~~~~--~~~~~a~~~a~~~a~ 412 (448)
T PRK03803 352 GGDG--K-GADFS--------PLREPVAK------YVRAVVLIGRDADKIAAALGGAVPLVRV--ATLAEAVAKAAELAQ 412 (448)
T ss_pred CCCC--C-CCCHH--------HHHHHHHh------hCCEEEEECCCHHHHHHHHhcCCCEEEe--CCHHHHHHHHHHhCC
Confidence 4321 1 22222 24455543 24778888766655432221 111111 122333344433223
Q ss_pred CCCceEeecCCchhHHHHhhh
Q 023455 182 ANNIVIAFPDDGAWKRFHKML 202 (282)
Q Consensus 182 ~~~~viv~pd~g~~~ra~~~a 202 (282)
.++.++++|-.+++..++.+.
T Consensus 413 ~gdvVL~SPa~aSfd~f~~~~ 433 (448)
T PRK03803 413 AGDIVLLSPACASLDMFKNFE 433 (448)
T ss_pred CCCEEEeCchhhcccccCCHH
Confidence 456789999888876655543
No 226
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=22.60 E-value=1.6e+02 Score=27.45 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred CCceEeecCCchhHHHHhhhcCC-CEEEE-EEEeeCCcc----EEEe--ecCCCCCCeEEEEeccccchHHHHHHHHHHH
Q 023455 183 NNIVIAFPDDGAWKRFHKMLDHF-PTVVC-AKVREGDKR----IVRI--KEGNPAGCHVVIVDDLVQSGGTLIECQKVLA 254 (282)
Q Consensus 183 ~~~viv~pd~g~~~ra~~~a~~~-~~~~~-~k~R~~~~~----i~~~--~~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk 254 (282)
+-.|+=-|..|+...++... +. |+.-. +.....++. ..++ ..|.++|.+|.||=|+- -|.|...-++.|+
T Consensus 104 D~iViRH~~egaa~~~a~~~-~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlk-hsRva~S~~~~L~ 181 (316)
T COG0540 104 DAIVIRHPEEGAARLLAEFS-GVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVGDLK-HSRVAHSNIQALK 181 (316)
T ss_pred CEEEEeCccccHHHHHHHhc-CCCceEECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEcccc-chHHHHHHHHHHH
Confidence 44455567777776666655 33 43211 122222221 1111 25789999999999987 8899999999999
Q ss_pred HCCCCEEEEEEEccccC
Q 023455 255 AHGAAKKTWRMLLPTFG 271 (282)
Q Consensus 255 ~~GA~~V~v~~tH~~fs 271 (282)
..| .+|+.++---+..
T Consensus 182 ~~g-a~v~lvsP~~L~~ 197 (316)
T COG0540 182 RFG-AEVYLVSPETLLP 197 (316)
T ss_pred HcC-CEEEEECchHhCC
Confidence 999 7777764433333
No 227
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=22.47 E-value=1.5e+02 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
+++.||+++|| =+|++-..+++.|.+.|+.+|+++.
T Consensus 177 ~~l~~kkvlvi----GaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 177 DNISSKNVLII----GAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred cCccCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 57889998864 6899999999999999999888774
No 228
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=22.41 E-value=84 Score=27.83 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCeEEEE----ecc-ccchHHHHHHHHHHHHCCCCEEEEEEEccccCCchhh
Q 023455 230 GCHVVIV----DDL-VQSGGTLIECQKVLAAHGAAKKTWRMLLPTFGSRIRA 276 (282)
Q Consensus 230 gk~vlIV----DDI-i~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs~~~~~ 276 (282)
..++++| ||. +.-|+|+... .++|....++++|+|-.+.....
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~----~~~G~~V~v~~lT~Ge~g~~~~~ 57 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKL----AARGVEVTVVCLTLGEAGENGGE 57 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHH----HHCCCeEEEEEccCCcccccCCc
Confidence 3444554 666 8899998754 67899999999999977765544
No 229
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=22.35 E-value=3.6e+02 Score=26.63 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=50.9
Q ss_pred CceEEEecCCCHHHHHHHHHHcCCcceeeeeE------eee--CCC---ceeEEEe---cCCCCCCCeEEEEeec-CCch
Q 023455 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW------RNF--ADG---WPNLYIN---SAHDIRGQHVAFLASF-SSPG 79 (282)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~------~~F--~dG---E~~v~v~---~~~~v~g~dV~iiqs~-~~~~ 79 (282)
..+++=--.|+...|--.|+.+| +++..--+ ++| |.. |.-|+.+ +.+.++||.|++|..- -.-.
T Consensus 284 aDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGT 362 (470)
T COG0034 284 ADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGT 362 (470)
T ss_pred ccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEccccccCc
Confidence 35555555677889999999996 87533222 222 322 2222222 3566889999998642 2111
Q ss_pred hhHHHHHHHHhccccCcceEEEEe
Q 023455 80 VIFEQISVIYALPRLFVASFTLVL 103 (282)
Q Consensus 80 ~lmelll~~~a~~~~~a~~i~~vi 103 (282)
. + -.+++.+|++||+.|.+-+
T Consensus 363 T-s--r~IV~mlReAGAkEVHvri 383 (470)
T COG0034 363 T-S--RRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred c-H--HHHHHHHHHhCCCEEEEEe
Confidence 1 1 1345678899999987754
No 230
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=22.25 E-value=2e+02 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEE
Q 023455 227 NPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
+++||+++|+ =+||+-..++..|.+.|+++|.++.
T Consensus 123 ~~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 123 DVKGKKLTVI----GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4678888865 4678888888899999999888874
No 231
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.17 E-value=1.1e+02 Score=20.35 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHCCCCEEE
Q 023455 242 SGGTLIECQKVLAAHGAAKKT 262 (282)
Q Consensus 242 TG~Tl~~~a~~Lk~~GA~~V~ 262 (282)
+=||+..|.+.|++.||-++.
T Consensus 19 s~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred chhHHHHHHHHHHHCCcEEee
Confidence 568999999999999987654
No 232
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=22.15 E-value=87 Score=30.10 Aligned_cols=27 Identities=33% Similarity=0.256 Sum_probs=24.1
Q ss_pred EeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 236 VDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 236 VDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
|||+ ||.-+..+.+.|.++||..|+..
T Consensus 254 iDD~--t~E~lg~~~e~L~~~GAlDV~~t 280 (382)
T TIGR00299 254 VDDI--SGEALGYLLESLLEQGALDVFTI 280 (382)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 6887 89999999999999999988765
No 233
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.14 E-value=4.3e+02 Score=23.53 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEeCCchhh-hcccCCCCcccccchHHHHHHHHhcCCCCCCceEeecCCchhHHHHhh
Q 023455 123 AFTMARILSNIPTSRGGPTSLVIYDIHALQE-RFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (282)
Q Consensus 123 a~~~a~lL~~~~~~~~g~d~Ii~vdlH~~~~-~gff~~~v~~l~~~~~~~la~~l~~~~~~~~~viv~pd~g~~~ra~~~ 201 (282)
.-.+|+.+.. .|++.++.+|+..... ++- ..+ +.+.+.+. ...++.++-.......+..+
T Consensus 32 p~~~a~~~~~-----~g~~~l~i~Dl~~~~~~~~~-----------n~~-~i~~i~~~--~~~pv~~gGGi~s~~d~~~l 92 (258)
T PRK01033 32 PINAVRIFNE-----KEVDELIVLDIDASKRGSEP-----------NYE-LIENLASE--CFMPLCYGGGIKTLEQAKKI 92 (258)
T ss_pred HHHHHHHHHH-----cCCCEEEEEECCCCcCCCcc-----------cHH-HHHHHHHh--CCCCEEECCCCCCHHHHHHH
Confidence 3367777775 4899999999987532 221 112 33334332 23456665544455555444
Q ss_pred hc-CCCEEEEEEEeeCC-------------ccEEEeecCCCC----CCeEEEEecc-ccchHHHHHHHHHHHHCCCCEEE
Q 023455 202 LD-HFPTVVCAKVREGD-------------KRIVRIKEGNPA----GCHVVIVDDL-VQSGGTLIECQKVLAAHGAAKKT 262 (282)
Q Consensus 202 a~-~~~~~~~~k~R~~~-------------~~i~~~~~~~v~----gk~vlIVDDI-i~TG~Tl~~~a~~Lk~~GA~~V~ 262 (282)
.. +.....+...-..+ ..+. +.-|++ |+.-+.++.= -.+..+..+.++.+.+.|+..+.
T Consensus 93 ~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~--vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii 170 (258)
T PRK01033 93 FSLGVEKVSINTAALEDPDLITEAAERFGSQSVV--VSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEIL 170 (258)
T ss_pred HHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEE--EEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEE
Confidence 42 44333322111010 1111 111222 2112222211 12456678889999999998776
Q ss_pred EEEEc
Q 023455 263 WRMLL 267 (282)
Q Consensus 263 v~~tH 267 (282)
+-..+
T Consensus 171 ~~~i~ 175 (258)
T PRK01033 171 LNSID 175 (258)
T ss_pred EEccC
Confidence 65333
No 234
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.10 E-value=1.3e+02 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=25.8
Q ss_pred ecCCCCCCeEEEEeccccchHHHHHH-HHHHHHCCCCEEEEEE
Q 023455 224 KEGNPAGCHVVIVDDLVQSGGTLIEC-QKVLAAHGAAKKTWRM 265 (282)
Q Consensus 224 ~~~~v~gk~vlIVDDIi~TG~Tl~~~-a~~Lk~~GA~~V~v~~ 265 (282)
+.-+++|++|+|| .||.+..- ++.|.+.||+ |.+++
T Consensus 19 i~l~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVa 55 (223)
T PRK05562 19 ISLLSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILS 55 (223)
T ss_pred eEEECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEc
Confidence 3456789999998 77776653 6677788865 55554
No 235
>PRK04194 hypothetical protein; Provisional
Probab=22.02 E-value=87 Score=30.21 Aligned_cols=27 Identities=30% Similarity=0.158 Sum_probs=24.0
Q ss_pred EeccccchHHHHHHHHHHHHCCCCEEEEE
Q 023455 236 VDDLVQSGGTLIECQKVLAAHGAAKKTWR 264 (282)
Q Consensus 236 VDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~ 264 (282)
|||+ ||.-+..+.+.|.++||..|+..
T Consensus 255 iDD~--t~E~lg~~~e~L~~~GAlDV~~t 281 (392)
T PRK04194 255 IDDL--SPEVLGYLFERLLEAGALDVFIT 281 (392)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 6887 89999999999999999987655
No 236
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.85 E-value=54 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHHHhccccCcceEEEEeecCCC
Q 023455 86 SVIYALPRLFVASFTLVLPFFPT 108 (282)
Q Consensus 86 l~~~a~~~~~a~~i~~viPY~~Y 108 (282)
-.++||+..++++|.++.||.--
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~e 130 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDE 130 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhh
Confidence 35679999999999999999843
No 237
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=21.48 E-value=1.4e+02 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEE
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRML 266 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~t 266 (282)
.+.+||+|+|| -+|.|-..++..|.+.| ++|.++.=
T Consensus 163 ~~~~~k~V~VV----G~G~SA~d~a~~l~~~g-~~V~~~~R 198 (203)
T PF13738_consen 163 EDFKGKRVVVV----GGGNSAVDIAYALAKAG-KSVTLVTR 198 (203)
T ss_dssp GGCTTSEEEEE------SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred hhcCCCcEEEE----cChHHHHHHHHHHHhhC-CEEEEEec
Confidence 35789999965 68999999999999988 88887753
No 238
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.45 E-value=5.3e+02 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHCCCCEEEE
Q 023455 242 SGGTLIECQKVLAAHGAAKKTW 263 (282)
Q Consensus 242 TG~Tl~~~a~~Lk~~GA~~V~v 263 (282)
++....+.++.|.+.|+..|.+
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iiv 174 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILL 174 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEE
Confidence 4566788999999999997766
No 239
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.96 E-value=3.5e+02 Score=19.98 Aligned_cols=73 Identities=10% Similarity=-0.073 Sum_probs=41.0
Q ss_pred eEEEec-CCCHHHHHHHHHHcCCcceeeeeEeeeCCCceeEEEecCCCCCCCeEEEEeecCCchhhHHHHHHHHhccccC
Q 023455 17 VHLFYC-VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (282)
Q Consensus 17 ~~i~~~-~~~~~la~~ia~~l~~~~~~~~~~~~F~dGE~~v~v~~~~~v~g~dV~iiqs~~~~~~lmelll~~~a~~~~~ 95 (282)
+.|++| ..+..--+++.+..| .+.... .=.+|...-.-+++..+...|++|+.+-+-..+.|. .+.+.|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G-~~~~~h---g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~--~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYG-GKLIHH---GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMW--KVKKAAKKYG 75 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcC-CEEEEE---ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHH--HHHHHHHHcC
Confidence 567777 345555566666676 443222 113332212212567788889999988655545544 4456677655
No 240
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=20.87 E-value=1.5e+02 Score=28.82 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred cCCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccccC
Q 023455 225 EGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTFG 271 (282)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~fs 271 (282)
..+.+||+|++| =+|.|-..++..|.+.| ++|..++=++.+.
T Consensus 170 ~~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 170 PEDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQRSPPHI 211 (443)
T ss_pred ccccCCCeEEEE----CCCccHHHHHHHHHhcC-CeeEEEecCCCce
Confidence 357899999986 59999999999999999 8999888776554
No 241
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=20.66 E-value=2.3e+02 Score=22.25 Aligned_cols=40 Identities=20% Similarity=-0.057 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEc
Q 023455 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLL 267 (282)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH 267 (282)
.+++||-|++-...+. .+..+-++...++||.-|.++..+
T Consensus 41 ~~v~GkIvlv~~g~~~--~~~~~k~~~A~~~GA~avi~~~~~ 80 (127)
T cd04819 41 LDLEGKIAVVKRDDPD--VDRKEKYAKAVAAGAAAFVVVNTV 80 (127)
T ss_pred CCCCCeEEEEEcCCCc--hhHHHHHHHHHHCCCEEEEEEeCC
Confidence 4689987755443331 256777888999999998888544
No 242
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=20.63 E-value=1.1e+02 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=25.2
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEcccc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPTF 270 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~f 270 (282)
+.+++|| +|. -....+.|++.|.+--.++.||+=.
T Consensus 22 ~~~ilID----pg~-~~~vl~~l~~~g~~l~~IllTH~H~ 56 (251)
T PRK10241 22 GRCLIVD----PGE-AEPVLNAIAENNWQPEAIFLTHHHH 56 (251)
T ss_pred CcEEEEC----CCC-hHHHHHHHHHcCCccCEEEeCCCCc
Confidence 4577777 453 3567788888887766899999643
No 243
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=20.52 E-value=4.1e+02 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=20.6
Q ss_pred eeHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 023455 121 ATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (282)
Q Consensus 121 ~sa~~~a~lL~~~~~~~~g~d~Ii~vdlH 149 (282)
+..++..++|+. |+.|+.+|..+|=.
T Consensus 29 LG~Rval~Lle~---HRGGperi~v~Dgq 54 (217)
T COG4015 29 LGVRVALDLLEV---HRGGPERIYVFDGQ 54 (217)
T ss_pred hhHHHHHHHHHH---hcCCCeEEEEecCc
Confidence 456888899985 46799999999843
No 244
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=20.37 E-value=70 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=17.0
Q ss_pred eEEEEeccccchHHHHHHHHHHHHCCC
Q 023455 232 HVVIVDDLVQSGGTLIECQKVLAAHGA 258 (282)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~~a~~Lk~~GA 258 (282)
.-++|||+.||+..+. ..|+-+|.
T Consensus 40 ~~vlI~DilDtl~i~~---~~l~~~Gi 63 (210)
T PF03192_consen 40 YPVLIDDILDTLHIYK---KHLELMGI 63 (210)
T ss_dssp S-BEEEEETTHHHHHH---HHHHHTT-
T ss_pred CCEEEEEcCCCHHHHH---HHHHHcCC
Confidence 4578999999998887 45555554
No 245
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=20.32 E-value=2.2e+02 Score=20.78 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=21.5
Q ss_pred CCCCeEEEEeccccchHHHHHH--HHHHHHCCCCEEEEE
Q 023455 228 PAGCHVVIVDDLVQSGGTLIEC--QKVLAAHGAAKKTWR 264 (282)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~~--a~~Lk~~GA~~V~v~ 264 (282)
-++++|++.+.--..+.....+ ...|++.|...|+.+
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l 103 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYIL 103 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEE
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEe
Confidence 3566888888333333333332 223888898876543
No 246
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=20.20 E-value=1.4e+02 Score=26.47 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred CeEEEEeccccchHHHHHHHHHHHHCCCCEEEEEEEccc
Q 023455 231 CHVVIVDDLVQSGGTLIECQKVLAAHGAAKKTWRMLLPT 269 (282)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~~a~~Lk~~GA~~V~v~~tH~~ 269 (282)
+.++||| +|.. ....+.|++.|.+--+++.||.=
T Consensus 20 ~~~ilID----~g~~-~~i~~~l~~~g~~l~~Il~TH~H 53 (248)
T TIGR03413 20 GQAAVVD----PGEA-EPVLDALEARGLTLTAILLTHHH 53 (248)
T ss_pred CCEEEEc----CCCh-HHHHHHHHHcCCeeeEEEeCCCC
Confidence 4678888 5543 56778888888776788999963
No 247
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=20.07 E-value=1.4e+02 Score=22.82 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEE
Q 023455 243 GGTLIECQKVLAAHGAAKKTWRM 265 (282)
Q Consensus 243 G~Tl~~~a~~Lk~~GA~~V~v~~ 265 (282)
-..+.++.+.|+++||+.|.++-
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~ 95 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEec
Confidence 46788999999999999998763
Done!