Query 023457
Match_columns 282
No_of_seqs 289 out of 2417
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 8.9E-28 1.9E-32 198.8 12.0 169 57-243 3-172 (173)
2 KOG2793 Putative N2,N2-dimethy 99.8 7.4E-20 1.6E-24 157.2 16.8 197 47-255 29-231 (248)
3 KOG3201 Uncharacterized conser 99.7 4.9E-18 1.1E-22 134.5 5.1 153 72-250 8-164 (201)
4 COG4123 Predicted O-methyltran 99.7 1.3E-15 2.8E-20 131.0 16.1 164 76-273 31-215 (248)
5 PF05175 MTS: Methyltransferas 99.7 2E-15 4.4E-20 124.5 15.0 132 61-226 3-141 (170)
6 COG3897 Predicted methyltransf 99.7 3.7E-16 8.1E-21 127.8 9.3 130 70-233 56-186 (218)
7 PF06325 PrmA: Ribosomal prote 99.6 3.1E-15 6.7E-20 132.9 14.8 154 58-251 128-282 (295)
8 COG2813 RsmC 16S RNA G1207 met 99.6 1.8E-14 4E-19 126.4 18.5 190 31-270 102-299 (300)
9 COG2264 PrmA Ribosomal protein 99.6 2.5E-14 5.5E-19 126.2 16.4 159 58-253 129-289 (300)
10 COG2227 UbiG 2-polyprenyl-3-me 99.6 6.5E-15 1.4E-19 124.9 10.5 109 104-232 58-167 (243)
11 PRK15001 SAM-dependent 23S rib 99.6 1.6E-13 3.5E-18 126.0 19.9 178 49-272 190-375 (378)
12 PRK09489 rsmC 16S ribosomal RN 99.5 1.1E-12 2.4E-17 119.5 19.3 166 60-274 167-340 (342)
13 PF12847 Methyltransf_18: Meth 99.5 1.4E-13 3E-18 105.1 10.0 98 105-212 1-104 (112)
14 TIGR00537 hemK_rel_arch HemK-r 99.5 2.4E-12 5.1E-17 107.0 17.6 125 105-253 19-166 (179)
15 TIGR00406 prmA ribosomal prote 99.5 2.3E-12 5E-17 115.1 17.5 156 58-251 126-282 (288)
16 PF01209 Ubie_methyltran: ubiE 99.5 4E-13 8.8E-18 116.1 11.4 110 105-231 47-159 (233)
17 KOG1270 Methyltransferases [Co 99.5 1.2E-13 2.6E-18 118.1 6.9 110 105-230 89-199 (282)
18 PLN02396 hexaprenyldihydroxybe 99.5 1.8E-12 3.9E-17 117.0 14.8 98 104-212 130-228 (322)
19 COG2226 UbiE Methylase involve 99.5 8.1E-13 1.8E-17 113.7 11.8 108 105-229 51-160 (238)
20 PRK11207 tellurite resistance 99.4 5.7E-12 1.2E-16 106.4 16.1 102 105-225 30-134 (197)
21 PF13847 Methyltransf_31: Meth 99.4 2E-12 4.3E-17 104.5 11.3 98 105-212 3-103 (152)
22 PLN02244 tocopherol O-methyltr 99.4 4E-12 8.7E-17 116.1 13.9 106 104-225 117-223 (340)
23 PRK00517 prmA ribosomal protei 99.4 1.8E-11 4E-16 107.1 17.3 151 58-252 86-238 (250)
24 PRK00107 gidB 16S rRNA methylt 99.4 2.8E-11 6E-16 101.2 16.8 129 106-260 46-178 (187)
25 COG2230 Cfa Cyclopropane fatty 99.4 3.8E-12 8.3E-17 111.6 11.8 107 102-227 69-178 (283)
26 PRK14968 putative methyltransf 99.4 2.7E-11 5.9E-16 100.8 16.5 144 74-253 8-174 (188)
27 PRK11036 putative S-adenosyl-L 99.4 5.8E-12 1.3E-16 110.5 12.5 96 106-212 45-142 (255)
28 PF08241 Methyltransf_11: Meth 99.4 1.8E-12 3.8E-17 95.4 7.9 89 110-212 1-90 (95)
29 TIGR00138 gidB 16S rRNA methyl 99.4 1.4E-11 2.9E-16 102.7 13.8 92 105-212 42-135 (181)
30 TIGR00477 tehB tellurite resis 99.4 2.5E-11 5.4E-16 102.3 15.5 101 105-225 30-133 (195)
31 PRK15068 tRNA mo(5)U34 methylt 99.4 3.9E-11 8.4E-16 108.7 17.6 103 104-223 121-224 (322)
32 PRK12335 tellurite resistance 99.4 3.4E-11 7.3E-16 107.5 16.5 100 106-225 121-223 (287)
33 PF02353 CMAS: Mycolic acid cy 99.3 2E-11 4.4E-16 107.9 14.1 103 103-224 60-165 (273)
34 PRK14967 putative methyltransf 99.3 5E-11 1.1E-15 102.6 15.8 140 77-251 21-183 (223)
35 PLN02233 ubiquinone biosynthes 99.3 1.6E-11 3.4E-16 108.2 12.7 107 105-225 73-182 (261)
36 TIGR00452 methyltransferase, p 99.3 1.7E-11 3.7E-16 110.2 12.7 121 74-224 103-224 (314)
37 TIGR02752 MenG_heptapren 2-hep 99.3 4.7E-11 1E-15 103.0 14.5 105 104-225 44-151 (231)
38 PTZ00098 phosphoethanolamine N 99.3 3.9E-11 8.5E-16 105.8 14.2 103 104-225 51-156 (263)
39 PLN02490 MPBQ/MSBQ methyltrans 99.3 7.9E-11 1.7E-15 106.8 16.4 129 105-253 113-257 (340)
40 smart00828 PKS_MT Methyltransf 99.3 4.9E-11 1.1E-15 102.4 14.2 101 107-224 1-103 (224)
41 COG2263 Predicted RNA methylas 99.3 4.6E-11 9.9E-16 97.9 12.8 140 102-271 42-197 (198)
42 PRK00377 cbiT cobalt-precorrin 99.3 2.4E-10 5.2E-15 96.5 16.3 127 104-251 39-169 (198)
43 PRK00216 ubiE ubiquinone/menaq 99.3 2.4E-10 5.3E-15 98.6 16.7 98 105-212 51-151 (239)
44 PLN02336 phosphoethanolamine N 99.3 1.8E-10 4E-15 109.8 16.4 97 104-212 265-362 (475)
45 PRK11873 arsM arsenite S-adeno 99.2 8.6E-11 1.9E-15 104.0 12.5 104 104-224 76-182 (272)
46 TIGR02469 CbiT precorrin-6Y C5 99.2 6.1E-10 1.3E-14 86.1 14.6 95 105-212 19-115 (124)
47 PRK01683 trans-aconitate 2-met 99.2 2.3E-10 5E-15 100.5 13.5 98 104-224 30-129 (258)
48 PRK10258 biotin biosynthesis p 99.2 1.4E-10 3E-15 101.4 12.1 91 105-212 42-133 (251)
49 PF08242 Methyltransf_12: Meth 99.2 3.9E-12 8.4E-17 95.2 1.9 94 110-212 1-96 (99)
50 PRK14103 trans-aconitate 2-met 99.2 1.1E-10 2.4E-15 102.4 11.2 96 104-224 28-125 (255)
51 PRK05134 bifunctional 3-demeth 99.2 6.2E-10 1.3E-14 96.2 15.3 97 104-212 47-144 (233)
52 PF13659 Methyltransf_26: Meth 99.2 7.8E-11 1.7E-15 90.6 8.6 106 106-225 1-115 (117)
53 PF13489 Methyltransf_23: Meth 99.2 2.2E-10 4.8E-15 92.6 10.9 97 104-229 21-118 (161)
54 PF05401 NodS: Nodulation prot 99.2 3.5E-10 7.6E-15 93.8 11.8 126 106-253 44-181 (201)
55 PRK04266 fibrillarin; Provisio 99.2 1.7E-09 3.8E-14 93.1 16.2 134 104-256 71-214 (226)
56 PRK08287 cobalt-precorrin-6Y C 99.2 1.1E-09 2.3E-14 91.6 14.1 117 105-246 31-150 (187)
57 PRK08317 hypothetical protein; 99.2 1E-09 2.2E-14 94.5 14.2 104 104-225 18-124 (241)
58 PF03848 TehB: Tellurite resis 99.2 4.1E-10 8.8E-15 94.0 11.2 95 104-212 29-126 (192)
59 PRK00121 trmB tRNA (guanine-N( 99.1 5.1E-10 1.1E-14 94.9 11.9 125 105-248 40-177 (202)
60 PRK05785 hypothetical protein; 99.1 5.4E-10 1.2E-14 96.3 12.2 88 106-212 52-140 (226)
61 PF08003 Methyltransf_9: Prote 99.1 4.1E-10 8.8E-15 99.2 11.1 99 103-212 113-212 (315)
62 PRK07402 precorrin-6B methylas 99.1 4.2E-09 9.1E-14 88.8 17.0 101 105-225 40-142 (196)
63 COG2242 CobL Precorrin-6B meth 99.1 1.6E-09 3.6E-14 89.0 13.5 125 103-251 32-160 (187)
64 PRK10909 rsmD 16S rRNA m(2)G96 99.1 6.1E-10 1.3E-14 94.0 11.2 97 105-212 53-152 (199)
65 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.6E-09 3.5E-14 107.7 15.8 131 105-253 538-681 (702)
66 PRK15451 tRNA cmo(5)U34 methyl 99.1 4.7E-10 1E-14 98.0 10.6 96 105-212 56-157 (247)
67 COG2890 HemK Methylase of poly 99.1 5.4E-09 1.2E-13 92.9 17.5 92 108-212 113-231 (280)
68 PF13649 Methyltransf_25: Meth 99.1 1.6E-10 3.5E-15 86.7 6.3 92 109-212 1-100 (101)
69 TIGR02072 BioC biotin biosynth 99.1 1E-09 2.3E-14 94.5 12.1 93 105-212 34-128 (240)
70 PRK14966 unknown domain/N5-glu 99.1 6.8E-09 1.5E-13 96.0 17.7 127 106-253 252-406 (423)
71 PRK13944 protein-L-isoaspartat 99.1 2.7E-09 5.8E-14 90.7 14.0 92 105-212 72-166 (205)
72 PRK11705 cyclopropane fatty ac 99.1 1.4E-09 3E-14 100.9 13.1 92 104-212 166-260 (383)
73 TIGR03704 PrmC_rel_meth putati 99.1 4.7E-09 1E-13 91.9 15.6 124 106-251 87-239 (251)
74 TIGR03587 Pse_Me-ase pseudamin 99.1 9.8E-10 2.1E-14 93.3 10.9 90 105-212 43-134 (204)
75 KOG4300 Predicted methyltransf 99.1 7.4E-10 1.6E-14 91.8 9.6 117 107-240 78-197 (252)
76 TIGR00740 methyltransferase, p 99.1 1.4E-09 3.1E-14 94.5 11.7 96 105-212 53-154 (239)
77 PTZ00146 fibrillarin; Provisio 99.1 1.7E-08 3.8E-13 89.3 18.1 160 69-256 104-275 (293)
78 PRK14902 16S rRNA methyltransf 99.1 1.2E-08 2.7E-13 96.5 18.4 122 73-226 234-380 (444)
79 PRK14901 16S rRNA methyltransf 99.1 1.2E-08 2.7E-13 96.1 18.3 170 73-271 236-433 (434)
80 PLN02585 magnesium protoporphy 99.1 6.4E-09 1.4E-13 93.8 15.5 94 105-208 144-240 (315)
81 TIGR03534 RF_mod_PrmC protein- 99.1 6.5E-09 1.4E-13 90.6 15.2 95 106-212 88-210 (251)
82 TIGR03533 L3_gln_methyl protei 99.1 2.3E-09 4.9E-14 95.6 12.3 96 106-212 122-244 (284)
83 TIGR00080 pimt protein-L-isoas 99.0 6.1E-09 1.3E-13 89.1 14.4 98 104-224 76-176 (215)
84 PRK15128 23S rRNA m(5)C1962 me 99.0 3E-09 6.4E-14 98.9 13.3 134 105-251 220-368 (396)
85 PRK10901 16S rRNA methyltransf 99.0 2.5E-08 5.5E-13 93.9 19.4 118 104-237 243-384 (427)
86 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1E-08 2.2E-13 87.4 15.3 102 105-225 39-143 (223)
87 PRK11188 rrmJ 23S rRNA methylt 99.0 1.8E-08 3.8E-13 85.9 16.5 123 104-251 50-188 (209)
88 TIGR02021 BchM-ChlM magnesium 99.0 2.6E-09 5.7E-14 91.5 11.5 94 105-212 55-151 (219)
89 PRK13942 protein-L-isoaspartat 99.0 5.8E-09 1.3E-13 89.1 13.5 98 104-224 75-175 (212)
90 TIGR00536 hemK_fam HemK family 99.0 1E-08 2.3E-13 91.4 15.4 95 107-212 116-237 (284)
91 PRK07580 Mg-protoporphyrin IX 99.0 6.3E-09 1.4E-13 89.5 13.4 91 105-209 63-156 (230)
92 PRK13168 rumA 23S rRNA m(5)U19 99.0 1.6E-08 3.4E-13 95.7 17.2 126 105-251 297-423 (443)
93 PRK13255 thiopurine S-methyltr 99.0 1.9E-08 4.1E-13 86.3 16.1 153 105-271 37-218 (218)
94 KOG1540 Ubiquinone biosynthesi 99.0 4.5E-09 9.7E-14 89.9 11.9 110 102-225 97-214 (296)
95 TIGR02716 C20_methyl_CrtF C-20 99.0 3.8E-09 8.3E-14 95.1 12.2 102 105-224 149-253 (306)
96 TIGR01983 UbiG ubiquinone bios 99.0 3.2E-09 6.9E-14 91.0 11.1 97 104-212 44-142 (224)
97 PLN03075 nicotianamine synthas 99.0 7.3E-09 1.6E-13 91.9 13.0 98 105-212 123-226 (296)
98 TIGR03840 TMPT_Se_Te thiopurin 99.0 1.5E-08 3.2E-13 86.5 14.4 150 77-253 19-188 (213)
99 KOG1499 Protein arginine N-met 99.0 1.4E-09 3.1E-14 97.0 8.3 101 102-212 57-160 (346)
100 PRK11805 N5-glutamine S-adenos 99.0 4.9E-09 1.1E-13 94.4 11.8 95 107-212 135-256 (307)
101 COG4976 Predicted methyltransf 99.0 6.1E-10 1.3E-14 93.7 5.3 125 106-253 126-266 (287)
102 PRK01544 bifunctional N5-gluta 99.0 1.1E-08 2.3E-13 98.2 14.1 129 105-254 138-295 (506)
103 TIGR00095 RNA methyltransferas 99.0 4.7E-09 1E-13 88.0 10.2 100 104-212 48-152 (189)
104 TIGR01177 conserved hypothetic 99.0 1.4E-08 3E-13 92.4 14.2 106 104-227 181-296 (329)
105 PRK06202 hypothetical protein; 99.0 4.4E-09 9.6E-14 90.9 10.3 92 105-210 60-159 (232)
106 PRK03522 rumB 23S rRNA methylu 99.0 2E-08 4.4E-13 90.8 14.8 122 105-251 173-295 (315)
107 KOG2904 Predicted methyltransf 99.0 3.7E-08 8E-13 85.1 15.2 105 73-192 126-232 (328)
108 PRK09328 N5-glutamine S-adenos 98.9 3.4E-08 7.4E-13 87.3 15.7 96 105-212 108-231 (275)
109 TIGR00091 tRNA (guanine-N(7)-) 98.9 8E-09 1.7E-13 87.0 10.8 100 105-212 16-125 (194)
110 TIGR02081 metW methionine bios 98.9 1.5E-08 3.2E-13 85.2 12.4 89 105-210 13-103 (194)
111 COG4106 Tam Trans-aconitate me 98.9 4.3E-09 9.4E-14 87.9 8.8 101 104-227 29-131 (257)
112 cd02440 AdoMet_MTases S-adenos 98.9 1.1E-08 2.5E-13 75.0 9.8 95 108-212 1-97 (107)
113 TIGR00563 rsmB ribosomal RNA s 98.9 8.9E-08 1.9E-12 90.2 18.1 126 73-228 222-371 (426)
114 PRK06922 hypothetical protein; 98.9 7.2E-09 1.6E-13 100.2 10.7 103 104-224 417-536 (677)
115 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.3E-07 2.9E-12 83.4 17.9 126 69-227 51-201 (264)
116 PRK00312 pcm protein-L-isoaspa 98.9 3.9E-08 8.5E-13 83.8 14.0 98 104-225 77-175 (212)
117 PLN02781 Probable caffeoyl-CoA 98.9 2.3E-08 5.1E-13 86.6 12.4 99 105-212 68-171 (234)
118 PRK14903 16S rRNA methyltransf 98.9 1.9E-07 4.1E-12 88.0 19.1 108 104-228 236-369 (431)
119 KOG3010 Methyltransferase [Gen 98.9 5.1E-09 1.1E-13 88.9 7.5 106 108-231 36-142 (261)
120 PHA03411 putative methyltransf 98.9 2.8E-08 6E-13 87.1 12.0 119 106-247 65-209 (279)
121 PF03602 Cons_hypoth95: Conser 98.9 5.7E-09 1.2E-13 87.0 7.2 102 104-212 41-146 (183)
122 TIGR02085 meth_trns_rumB 23S r 98.9 5.1E-08 1.1E-12 90.2 14.2 122 105-251 233-355 (374)
123 PRK04457 spermidine synthase; 98.9 3.1E-08 6.8E-13 87.3 11.9 124 105-246 66-196 (262)
124 PF07021 MetW: Methionine bios 98.9 2.1E-08 4.6E-13 83.0 10.1 88 105-209 13-102 (193)
125 PLN02672 methionine S-methyltr 98.9 6.1E-08 1.3E-12 99.1 15.5 83 105-191 118-212 (1082)
126 PLN02336 phosphoethanolamine N 98.9 2.2E-08 4.8E-13 95.5 11.7 96 105-212 37-135 (475)
127 smart00650 rADc Ribosomal RNA 98.8 1.1E-07 2.4E-12 78.2 14.2 75 104-192 12-87 (169)
128 COG2518 Pcm Protein-L-isoaspar 98.8 4E-08 8.7E-13 82.5 11.2 99 104-226 71-170 (209)
129 smart00138 MeTrc Methyltransfe 98.8 1.2E-08 2.7E-13 89.9 8.4 103 105-212 99-235 (264)
130 KOG1271 Methyltransferases [Ge 98.8 1.2E-07 2.5E-12 77.4 13.1 147 73-247 40-200 (227)
131 KOG3191 Predicted N6-DNA-methy 98.8 1.5E-07 3.3E-12 76.7 13.5 140 106-270 44-208 (209)
132 PRK14904 16S rRNA methyltransf 98.8 5E-07 1.1E-11 85.6 19.2 107 104-228 249-380 (445)
133 COG2519 GCD14 tRNA(1-methylade 98.8 1.4E-07 3.1E-12 81.1 13.6 104 102-227 91-197 (256)
134 PRK11088 rrmA 23S rRNA methylt 98.8 7.4E-08 1.6E-12 85.4 12.2 92 105-225 85-181 (272)
135 PRK11727 23S rRNA mA1618 methy 98.8 2.9E-08 6.3E-13 89.4 9.2 86 105-196 114-203 (321)
136 KOG2920 Predicted methyltransf 98.8 1.9E-09 4.1E-14 93.9 1.2 125 71-212 91-227 (282)
137 PHA03412 putative methyltransf 98.8 3.8E-08 8.3E-13 84.4 9.1 90 106-212 50-156 (241)
138 TIGR00438 rrmJ cell division p 98.8 1.2E-06 2.5E-11 73.3 17.8 122 104-251 31-169 (188)
139 KOG1500 Protein arginine N-met 98.8 3.3E-08 7.1E-13 87.6 8.6 99 102-212 174-275 (517)
140 TIGR03438 probable methyltrans 98.7 1.1E-07 2.4E-12 85.5 12.0 101 105-212 63-170 (301)
141 PRK05031 tRNA (uracil-5-)-meth 98.7 2.9E-07 6.4E-12 84.8 15.0 123 107-252 208-343 (362)
142 PRK13943 protein-L-isoaspartat 98.7 2.5E-07 5.5E-12 83.7 14.0 91 105-212 80-173 (322)
143 TIGR00479 rumA 23S rRNA (uraci 98.7 1.8E-07 4E-12 88.2 13.1 126 105-251 292-419 (431)
144 TIGR02143 trmA_only tRNA (urac 98.7 5.6E-07 1.2E-11 82.7 15.4 123 107-251 199-333 (353)
145 COG4122 Predicted O-methyltran 98.7 2.4E-07 5.2E-12 78.8 11.9 96 105-212 59-159 (219)
146 PF01135 PCMT: Protein-L-isoas 98.7 1.2E-07 2.7E-12 80.6 9.4 99 104-225 71-172 (209)
147 PRK14121 tRNA (guanine-N(7)-)- 98.7 2.5E-07 5.4E-12 85.2 12.0 100 104-212 121-228 (390)
148 PRK13256 thiopurine S-methyltr 98.7 1.6E-06 3.5E-11 74.4 16.3 139 105-252 43-197 (226)
149 PF08704 GCD14: tRNA methyltra 98.7 5E-07 1.1E-11 78.5 13.3 122 103-245 38-164 (247)
150 PF01596 Methyltransf_3: O-met 98.7 2E-07 4.4E-12 79.0 10.4 99 105-212 45-148 (205)
151 TIGR00478 tly hemolysin TlyA f 98.7 3.3E-07 7.1E-12 78.9 11.8 109 73-212 55-165 (228)
152 PF05724 TPMT: Thiopurine S-me 98.7 4.4E-07 9.4E-12 77.8 12.5 171 77-271 22-218 (218)
153 PLN02476 O-methyltransferase 98.7 3.7E-07 8E-12 80.6 12.0 97 104-212 117-221 (278)
154 COG0742 N6-adenine-specific me 98.6 2.5E-07 5.4E-12 76.6 10.2 99 104-212 42-147 (187)
155 COG1092 Predicted SAM-dependen 98.6 9.8E-07 2.1E-11 81.4 14.2 134 105-251 217-365 (393)
156 TIGR00417 speE spermidine synt 98.6 7.3E-07 1.6E-11 79.0 12.2 101 106-212 73-179 (270)
157 PRK00811 spermidine synthase; 98.6 7.8E-07 1.7E-11 79.3 12.3 103 105-212 76-184 (283)
158 KOG2899 Predicted methyltransf 98.6 1E-06 2.2E-11 75.1 11.9 110 103-212 56-202 (288)
159 PF10672 Methyltrans_SAM: S-ad 98.6 3.8E-07 8.1E-12 81.0 9.3 124 105-242 123-253 (286)
160 KOG1541 Predicted protein carb 98.5 1.6E-06 3.6E-11 72.9 11.5 120 105-247 50-182 (270)
161 KOG3420 Predicted RNA methylas 98.5 1.7E-07 3.7E-12 73.6 4.9 80 102-193 45-125 (185)
162 KOG2361 Predicted methyltransf 98.5 3.3E-07 7.2E-12 78.0 6.7 97 108-212 74-176 (264)
163 PF05185 PRMT5: PRMT5 arginine 98.5 7.3E-07 1.6E-11 84.1 9.2 97 105-212 186-290 (448)
164 PLN02589 caffeoyl-CoA O-methyl 98.5 2.2E-06 4.8E-11 74.7 11.5 96 105-212 79-183 (247)
165 PRK04148 hypothetical protein; 98.4 1.3E-06 2.9E-11 68.6 8.8 96 80-211 3-100 (134)
166 PRK01581 speE spermidine synth 98.4 3.7E-06 8E-11 76.7 12.9 101 105-212 150-261 (374)
167 PRK04338 N(2),N(2)-dimethylgua 98.4 1.8E-06 3.9E-11 80.0 11.0 92 106-212 58-151 (382)
168 PRK00274 ksgA 16S ribosomal RN 98.4 1.3E-06 2.9E-11 77.4 9.0 73 105-192 42-115 (272)
169 PF06080 DUF938: Protein of un 98.4 1.4E-06 3.1E-11 73.1 8.6 100 108-212 28-134 (204)
170 PRK03612 spermidine synthase; 98.4 3.7E-06 8.1E-11 81.1 12.3 104 105-212 297-408 (521)
171 PLN02366 spermidine synthase 98.4 1.2E-05 2.6E-10 72.4 14.7 128 105-245 91-227 (308)
172 PRK14896 ksgA 16S ribosomal RN 98.4 3E-06 6.6E-11 74.5 10.4 74 104-193 28-102 (258)
173 PF05219 DREV: DREV methyltran 98.4 4.2E-06 9.2E-11 72.4 10.9 88 104-212 93-181 (265)
174 TIGR00308 TRM1 tRNA(guanine-26 98.3 3.2E-06 6.9E-11 78.0 10.2 93 106-212 45-140 (374)
175 PF02475 Met_10: Met-10+ like- 98.3 2E-06 4.3E-11 72.6 7.9 94 104-212 100-195 (200)
176 COG1041 Predicted DNA modifica 98.3 2.1E-05 4.5E-10 71.0 14.5 127 103-254 195-332 (347)
177 PTZ00338 dimethyladenosine tra 98.3 3.7E-06 8.1E-11 75.2 9.4 76 105-193 36-112 (294)
178 PF00891 Methyltransf_2: O-met 98.3 3E-06 6.4E-11 73.6 7.7 88 105-212 100-190 (241)
179 PF05958 tRNA_U5-meth_tr: tRNA 98.2 6.1E-05 1.3E-09 69.3 14.2 143 74-251 178-332 (352)
180 TIGR00755 ksgA dimethyladenosi 98.1 0.00012 2.6E-09 64.2 15.4 57 105-170 29-86 (253)
181 COG2520 Predicted methyltransf 98.1 5.3E-05 1.1E-09 68.7 13.2 95 104-212 187-282 (341)
182 TIGR02987 met_A_Alw26 type II 98.1 0.00011 2.3E-09 71.2 16.0 155 105-271 31-247 (524)
183 PF05148 Methyltransf_8: Hypot 98.1 8.9E-05 1.9E-09 62.3 13.2 127 106-274 73-201 (219)
184 COG2265 TrmA SAM-dependent met 98.1 5.2E-05 1.1E-09 71.3 12.9 125 105-251 293-419 (432)
185 PLN02823 spermine synthase 98.1 7.6E-05 1.6E-09 68.0 13.6 101 105-212 103-213 (336)
186 PRK11760 putative 23S rRNA C24 98.1 0.00023 5E-09 64.3 16.3 112 104-242 210-324 (357)
187 PF05971 Methyltransf_10: Prot 98.1 2.3E-05 5E-10 69.7 9.6 86 106-196 103-191 (299)
188 COG3963 Phospholipid N-methylt 98.1 4.5E-05 9.8E-10 61.6 10.2 117 73-212 28-149 (194)
189 PF03291 Pox_MCEL: mRNA cappin 98.0 2.3E-05 5E-10 71.3 9.1 128 72-212 41-179 (331)
190 PF05891 Methyltransf_PK: AdoM 98.0 6E-05 1.3E-09 63.8 10.4 144 105-268 55-217 (218)
191 PRK11933 yebU rRNA (cytosine-C 98.0 0.00048 1E-08 65.5 17.4 126 72-228 94-245 (470)
192 COG0357 GidB Predicted S-adeno 98.0 9.5E-05 2.1E-09 62.9 10.9 91 106-212 68-161 (215)
193 PF09445 Methyltransf_15: RNA 97.9 2.4E-05 5.3E-10 63.7 6.5 77 108-192 2-79 (163)
194 PF01170 UPF0020: Putative RNA 97.9 0.00025 5.4E-09 58.9 12.8 98 104-211 27-143 (179)
195 PF02390 Methyltransf_4: Putat 97.9 0.00011 2.4E-09 61.9 10.1 99 106-212 18-126 (195)
196 KOG1661 Protein-L-isoaspartate 97.9 6.7E-05 1.4E-09 62.8 8.4 104 104-224 81-192 (237)
197 PF02527 GidB: rRNA small subu 97.9 0.00013 2.9E-09 60.7 9.7 89 108-212 51-141 (184)
198 KOG2187 tRNA uracil-5-methyltr 97.8 8.9E-05 1.9E-09 69.7 9.3 125 76-227 366-491 (534)
199 PF01861 DUF43: Protein of unk 97.8 0.00081 1.7E-08 57.9 14.2 150 71-251 23-177 (243)
200 PF08123 DOT1: Histone methyla 97.8 9.6E-05 2.1E-09 62.7 8.3 105 105-212 42-151 (205)
201 TIGR01444 fkbM_fam methyltrans 97.7 0.00017 3.7E-09 57.1 8.1 57 108-170 1-59 (143)
202 COG0144 Sun tRNA and rRNA cyto 97.7 0.004 8.8E-08 57.3 18.1 141 73-243 140-306 (355)
203 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00048 1E-08 62.1 11.9 157 104-273 45-235 (311)
204 COG0293 FtsJ 23S rRNA methylas 97.7 0.005 1.1E-07 51.9 16.3 155 76-271 28-200 (205)
205 KOG0820 Ribosomal RNA adenine 97.7 0.00036 7.8E-09 60.7 9.4 95 69-189 35-130 (315)
206 KOG1975 mRNA cap methyltransfe 97.6 0.00024 5.2E-09 63.2 8.4 108 105-212 117-230 (389)
207 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00013 2.7E-09 63.9 6.4 142 103-252 54-239 (256)
208 KOG3045 Predicted RNA methylas 97.6 0.00092 2E-08 57.9 11.4 124 105-272 180-305 (325)
209 COG1189 Predicted rRNA methyla 97.6 0.00085 1.8E-08 57.5 11.1 110 73-212 59-171 (245)
210 COG0220 Predicted S-adenosylme 97.6 0.00061 1.3E-08 58.6 10.4 98 107-212 50-157 (227)
211 PLN02232 ubiquinone biosynthes 97.6 0.0002 4.4E-09 58.3 6.7 80 132-225 1-81 (160)
212 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.0015 3.3E-08 65.4 13.6 98 105-210 190-335 (702)
213 COG0030 KsgA Dimethyladenosine 97.5 0.00041 8.9E-09 60.6 8.4 76 105-193 30-106 (259)
214 COG4076 Predicted RNA methylas 97.5 0.00017 3.7E-09 59.4 5.6 93 106-212 33-128 (252)
215 PF11968 DUF3321: Putative met 97.5 0.0026 5.6E-08 53.9 12.8 138 75-251 29-180 (219)
216 PRK00536 speE spermidine synth 97.5 0.0023 5E-08 56.3 12.9 92 105-212 72-164 (262)
217 PF01728 FtsJ: FtsJ-like methy 97.5 0.00077 1.7E-08 55.8 9.5 53 76-138 4-59 (181)
218 PF09243 Rsm22: Mitochondrial 97.5 0.00096 2.1E-08 59.2 10.1 96 103-209 31-131 (274)
219 KOG2497 Predicted methyltransf 97.5 8.6E-05 1.9E-09 65.0 3.2 125 70-212 67-193 (262)
220 KOG2940 Predicted methyltransf 97.4 0.00026 5.6E-09 60.2 5.2 94 106-212 73-167 (325)
221 COG0421 SpeE Spermidine syntha 97.4 0.0016 3.5E-08 57.9 10.5 99 107-212 78-183 (282)
222 PF12147 Methyltransf_20: Puta 97.4 0.0048 1E-07 54.5 13.1 102 104-212 134-242 (311)
223 KOG1501 Arginine N-methyltrans 97.4 0.0011 2.4E-08 61.3 9.0 96 107-212 68-168 (636)
224 PF01269 Fibrillarin: Fibrilla 97.3 0.029 6.2E-07 47.9 16.6 155 70-252 46-213 (229)
225 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0023 5.1E-08 56.3 10.5 94 105-212 30-124 (262)
226 PF01564 Spermine_synth: Sperm 97.3 0.005 1.1E-07 53.8 12.1 129 105-246 76-213 (246)
227 COG2521 Predicted archaeal met 97.3 0.0014 3.1E-08 56.0 8.2 133 104-251 133-277 (287)
228 PHA01634 hypothetical protein 97.2 0.0013 2.9E-08 50.8 7.0 51 102-152 25-76 (156)
229 KOG3987 Uncharacterized conser 97.2 0.00021 4.6E-09 59.8 2.6 89 103-212 110-199 (288)
230 KOG1663 O-methyltransferase [S 97.2 0.0053 1.1E-07 52.4 10.8 99 105-212 73-176 (237)
231 PRK00050 16S rRNA m(4)C1402 me 97.2 0.0016 3.4E-08 58.3 7.9 45 104-148 18-65 (296)
232 PRK10742 putative methyltransf 97.2 0.0029 6.2E-08 54.9 9.1 86 108-199 91-180 (250)
233 PF01739 CheR: CheR methyltran 97.1 0.0011 2.4E-08 55.8 5.8 109 105-225 31-174 (196)
234 PF13679 Methyltransf_32: Meth 97.1 0.0016 3.5E-08 51.8 6.2 48 104-151 24-77 (141)
235 KOG2915 tRNA(1-methyladenosine 97.0 0.018 3.9E-07 50.4 12.7 97 103-212 103-202 (314)
236 COG1352 CheR Methylase of chem 97.0 0.0028 6E-08 55.9 7.7 103 105-212 96-234 (268)
237 PRK10611 chemotaxis methyltran 97.0 0.0042 9.1E-08 55.4 8.6 103 106-212 116-255 (287)
238 PF04816 DUF633: Family of unk 96.9 0.017 3.7E-07 49.0 11.6 118 109-248 1-120 (205)
239 PRK01544 bifunctional N5-gluta 96.9 0.007 1.5E-07 58.4 10.3 100 104-212 346-455 (506)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.9 0.027 5.9E-07 50.2 13.0 113 104-231 84-225 (283)
241 COG0116 Predicted N6-adenine-s 96.8 0.024 5.1E-07 52.2 12.1 98 105-212 191-337 (381)
242 PF03059 NAS: Nicotianamine sy 96.8 0.026 5.6E-07 50.0 12.0 97 106-212 121-223 (276)
243 KOG1709 Guanidinoacetate methy 96.6 0.0076 1.6E-07 51.0 7.0 98 104-212 100-199 (271)
244 COG0500 SmtA SAM-dependent met 96.6 0.054 1.2E-06 41.4 11.7 93 109-212 52-148 (257)
245 PF03141 Methyltransf_29: Puta 96.2 0.0088 1.9E-07 56.6 5.5 95 107-227 119-220 (506)
246 COG2384 Predicted SAM-dependen 96.2 0.2 4.4E-06 42.6 13.1 120 106-247 17-138 (226)
247 PF13578 Methyltransf_24: Meth 95.9 0.0024 5.2E-08 47.9 0.5 92 110-212 1-98 (106)
248 COG3129 Predicted SAM-dependen 95.9 0.02 4.4E-07 48.9 6.0 86 104-195 77-166 (292)
249 KOG4589 Cell division protein 95.9 0.21 4.7E-06 41.5 11.8 34 103-136 67-102 (232)
250 PF07942 N2227: N2227-like pro 95.9 0.33 7.2E-06 42.9 13.9 101 104-212 55-195 (270)
251 COG1889 NOP1 Fibrillarin-like 95.8 0.99 2.1E-05 38.1 16.7 158 72-257 51-219 (231)
252 PF02005 TRM: N2,N2-dimethylgu 95.8 0.066 1.4E-06 49.7 9.3 95 106-212 50-147 (377)
253 TIGR03439 methyl_EasF probable 95.7 0.17 3.8E-06 45.8 11.7 101 105-212 76-190 (319)
254 KOG2730 Methylase [General fun 95.6 0.02 4.4E-07 48.6 4.7 82 106-194 95-177 (263)
255 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.08 1.7E-06 48.3 8.9 99 106-225 53-154 (380)
256 cd00315 Cyt_C5_DNA_methylase C 95.4 0.51 1.1E-05 41.8 13.4 41 108-148 2-43 (275)
257 COG4262 Predicted spermidine s 95.3 0.28 6E-06 44.9 11.2 134 105-251 289-435 (508)
258 COG5459 Predicted rRNA methyla 95.3 0.029 6.3E-07 50.8 4.9 101 102-212 110-218 (484)
259 PRK09424 pntA NAD(P) transhydr 95.0 0.11 2.3E-06 50.1 8.2 43 103-145 162-206 (509)
260 KOG0024 Sorbitol dehydrogenase 94.9 0.077 1.7E-06 47.7 6.4 43 103-145 167-212 (354)
261 KOG1269 SAM-dependent methyltr 94.7 0.079 1.7E-06 48.9 6.3 99 104-212 109-208 (364)
262 COG1064 AdhP Zn-dependent alco 94.2 0.42 9E-06 43.6 9.7 96 103-227 164-261 (339)
263 KOG1122 tRNA and rRNA cytosine 94.1 2.1 4.5E-05 40.1 13.9 138 100-253 236-399 (460)
264 PF06962 rRNA_methylase: Putat 94.0 0.78 1.7E-05 36.4 9.7 104 130-251 1-124 (140)
265 COG1568 Predicted methyltransf 94.0 0.6 1.3E-05 41.2 9.8 92 101-203 148-241 (354)
266 KOG3178 Hydroxyindole-O-methyl 94.0 0.24 5.3E-06 44.9 7.6 92 107-224 179-274 (342)
267 COG1063 Tdh Threonine dehydrog 93.7 0.69 1.5E-05 42.5 10.4 102 105-230 168-274 (350)
268 PF04672 Methyltransf_19: S-ad 93.7 0.34 7.4E-06 42.6 7.8 96 108-212 71-183 (267)
269 PF07091 FmrO: Ribosomal RNA m 93.6 0.27 6E-06 42.7 6.9 74 106-192 106-181 (251)
270 KOG1227 Putative methyltransfe 93.4 0.058 1.3E-06 47.9 2.6 93 105-212 194-288 (351)
271 KOG2352 Predicted spermine/spe 93.4 0.45 9.9E-06 45.1 8.6 101 107-226 50-162 (482)
272 PRK09880 L-idonate 5-dehydroge 93.1 0.79 1.7E-05 41.6 9.7 41 105-145 169-212 (343)
273 KOG2078 tRNA modification enzy 92.8 0.098 2.1E-06 48.6 3.1 60 104-168 248-308 (495)
274 PF01555 N6_N4_Mtase: DNA meth 92.4 0.41 9E-06 40.3 6.4 41 104-145 190-231 (231)
275 TIGR00006 S-adenosyl-methyltra 92.1 0.8 1.7E-05 41.2 8.1 46 104-149 19-66 (305)
276 COG1565 Uncharacterized conser 91.8 0.72 1.6E-05 42.2 7.4 43 106-148 78-130 (370)
277 COG0286 HsdM Type I restrictio 91.3 14 0.00031 35.5 16.3 157 105-275 186-380 (489)
278 PRK11524 putative methyltransf 91.0 0.88 1.9E-05 40.5 7.2 46 103-149 206-252 (284)
279 KOG1253 tRNA methyltransferase 90.9 0.32 6.9E-06 46.1 4.3 100 103-212 107-209 (525)
280 KOG2671 Putative RNA methylase 90.5 0.25 5.5E-06 44.8 3.2 80 104-193 207-294 (421)
281 KOG1331 Predicted methyltransf 90.5 0.32 6.8E-06 43.0 3.7 87 106-212 46-136 (293)
282 COG2961 ComJ Protein involved 90.0 5.1 0.00011 34.9 10.5 145 69-243 63-212 (279)
283 PRK13699 putative methylase; P 89.7 1.6 3.4E-05 37.6 7.5 45 104-149 162-207 (227)
284 PF03141 Methyltransf_29: Puta 89.7 0.88 1.9E-05 43.4 6.2 87 106-212 366-460 (506)
285 KOG3115 Methyltransferase-like 89.4 0.41 8.9E-06 40.3 3.4 46 106-151 61-108 (249)
286 PF11599 AviRa: RRNA methyltra 89.2 1.4 2.9E-05 37.6 6.3 46 105-150 51-100 (246)
287 TIGR02822 adh_fam_2 zinc-bindi 88.5 5.3 0.00011 36.1 10.4 89 104-225 164-254 (329)
288 PF04989 CmcI: Cephalosporin h 88.2 3 6.6E-05 35.3 7.9 105 105-226 32-147 (206)
289 cd08230 glucose_DH Glucose deh 88.1 4.2 9E-05 37.0 9.6 32 105-136 172-204 (355)
290 KOG2198 tRNA cytosine-5-methyl 87.9 18 0.00038 33.5 13.0 143 102-256 152-330 (375)
291 KOG2651 rRNA adenine N-6-methy 87.9 1.4 3E-05 40.7 6.0 32 106-137 154-185 (476)
292 PF04445 SAM_MT: Putative SAM- 87.9 0.96 2.1E-05 39.1 4.8 82 107-194 77-162 (234)
293 PF00107 ADH_zinc_N: Zinc-bind 87.2 2.5 5.4E-05 32.2 6.5 87 115-227 1-91 (130)
294 TIGR00561 pntA NAD(P) transhyd 87.2 5.7 0.00012 38.5 10.1 97 103-212 161-277 (511)
295 PRK15001 SAM-dependent 23S rib 86.9 12 0.00026 34.9 11.7 107 72-212 25-135 (378)
296 KOG4058 Uncharacterized conser 86.8 5.2 0.00011 32.2 7.9 49 104-152 71-120 (199)
297 PF07757 AdoMet_MTase: Predict 86.7 1.2 2.6E-05 33.6 4.1 30 106-136 59-88 (112)
298 KOG2798 Putative trehalase [Ca 86.1 20 0.00044 32.5 12.1 32 181-212 258-289 (369)
299 PRK10458 DNA cytosine methylas 86.0 23 0.0005 34.0 13.4 44 104-147 86-130 (467)
300 TIGR03366 HpnZ_proposed putati 85.5 5 0.00011 35.2 8.3 41 105-145 120-163 (280)
301 KOG3924 Putative protein methy 85.3 2.4 5.3E-05 39.2 6.2 107 103-212 190-301 (419)
302 KOG1596 Fibrillarin and relate 84.9 26 0.00056 30.7 13.5 61 67-136 126-189 (317)
303 TIGR01202 bchC 2-desacetyl-2-h 84.7 5.2 0.00011 35.7 8.1 39 105-143 144-185 (308)
304 PF10237 N6-adenineMlase: Prob 84.2 21 0.00046 29.0 11.7 106 76-212 10-116 (162)
305 PF02636 Methyltransf_28: Puta 83.9 2 4.3E-05 37.5 4.9 43 106-148 19-71 (252)
306 COG1748 LYS9 Saccharopine dehy 83.6 3.4 7.4E-05 38.5 6.5 73 107-193 2-79 (389)
307 COG0686 Ald Alanine dehydrogen 83.6 17 0.00037 32.9 10.5 118 77-212 141-261 (371)
308 PRK01747 mnmC bifunctional tRN 82.9 13 0.00028 37.2 10.8 31 106-136 58-101 (662)
309 cd08281 liver_ADH_like1 Zinc-d 82.1 8.9 0.00019 35.2 8.8 42 104-145 190-234 (371)
310 cd08237 ribitol-5-phosphate_DH 81.9 8.9 0.00019 34.8 8.6 41 104-144 162-206 (341)
311 cd08254 hydroxyacyl_CoA_DH 6-h 81.6 9.2 0.0002 34.0 8.5 42 104-145 164-207 (338)
312 PF05206 TRM13: Methyltransfer 81.5 3.9 8.4E-05 36.0 5.8 32 105-136 18-55 (259)
313 PF03686 UPF0146: Uncharacteri 81.2 4.1 8.8E-05 31.7 5.1 43 80-138 3-47 (127)
314 KOG1098 Putative SAM-dependent 80.3 2.9 6.3E-05 41.0 4.9 52 74-137 25-79 (780)
315 TIGR03451 mycoS_dep_FDH mycoth 80.1 5.1 0.00011 36.5 6.4 42 104-145 175-219 (358)
316 PF03492 Methyltransf_7: SAM d 79.8 6.5 0.00014 35.9 6.9 32 105-136 16-64 (334)
317 cd05188 MDR Medium chain reduc 79.8 14 0.0003 31.4 8.8 41 104-144 133-175 (271)
318 cd08239 THR_DH_like L-threonin 78.7 14 0.00031 33.1 8.8 41 104-144 162-205 (339)
319 TIGR00518 alaDH alanine dehydr 78.1 8.7 0.00019 35.6 7.3 41 104-144 165-207 (370)
320 PRK05786 fabG 3-ketoacyl-(acyl 77.9 40 0.00087 28.2 12.5 78 105-193 4-92 (238)
321 PF00145 DNA_methylase: C-5 cy 77.6 4.2 9E-05 36.3 4.9 41 108-148 2-43 (335)
322 COG0270 Dcm Site-specific DNA 77.2 5.9 0.00013 36.0 5.8 43 106-148 3-46 (328)
323 PLN03209 translocon at the inn 77.1 55 0.0012 32.3 12.6 85 103-190 77-167 (576)
324 PRK07326 short chain dehydroge 76.7 43 0.00094 28.0 11.3 76 105-191 5-91 (237)
325 COG1255 Uncharacterized protei 76.5 23 0.0005 27.2 7.7 78 107-212 15-94 (129)
326 PRK07523 gluconate 5-dehydroge 75.2 51 0.0011 28.0 13.0 80 103-192 7-97 (255)
327 PLN02586 probable cinnamyl alc 74.8 21 0.00046 32.6 8.9 33 104-136 182-215 (360)
328 PF03721 UDPG_MGDP_dh_N: UDP-g 74.4 22 0.00049 29.4 8.1 39 182-227 76-121 (185)
329 PRK06181 short chain dehydroge 74.2 55 0.0012 27.9 11.3 76 107-192 2-88 (263)
330 cd08283 FDH_like_1 Glutathione 73.9 6.3 0.00014 36.4 5.2 42 104-145 183-227 (386)
331 PRK08703 short chain dehydroge 73.8 27 0.00058 29.5 8.8 81 104-191 4-96 (239)
332 PLN02668 indole-3-acetate carb 73.8 2.5 5.4E-05 39.4 2.5 31 106-136 64-110 (386)
333 PF01262 AlaDh_PNT_C: Alanine 73.3 2 4.2E-05 35.0 1.5 43 103-145 17-61 (168)
334 cd08232 idonate-5-DH L-idonate 73.3 30 0.00066 30.9 9.5 40 105-144 165-207 (339)
335 PF11899 DUF3419: Protein of u 73.2 12 0.00025 35.0 6.7 58 73-147 19-77 (380)
336 TIGR00027 mthyl_TIGR00027 meth 72.5 26 0.00056 30.8 8.5 101 108-212 84-190 (260)
337 PF01795 Methyltransf_5: MraW 71.6 4.6 9.9E-05 36.5 3.5 60 104-170 19-80 (310)
338 PF05050 Methyltransf_21: Meth 71.4 12 0.00026 29.4 5.8 41 111-151 1-49 (167)
339 PRK07904 short chain dehydroge 71.4 62 0.0013 27.8 10.6 80 104-190 6-95 (253)
340 KOG2912 Predicted DNA methylas 71.2 5.1 0.00011 36.2 3.6 79 110-195 107-191 (419)
341 COG0275 Predicted S-adenosylme 71.2 25 0.00053 31.7 7.9 48 104-151 22-72 (314)
342 PTZ00357 methyltransferase; Pr 71.0 32 0.00069 34.7 9.2 104 107-211 702-823 (1072)
343 PF04378 RsmJ: Ribosomal RNA s 70.7 24 0.00052 30.8 7.6 147 67-243 30-181 (245)
344 PLN02178 cinnamyl-alcohol dehy 69.8 35 0.00077 31.4 9.2 34 105-138 178-213 (375)
345 PF02086 MethyltransfD12: D12 69.7 8.4 0.00018 33.3 4.8 39 105-144 20-59 (260)
346 PRK08213 gluconate 5-dehydroge 69.5 40 0.00087 28.8 9.0 80 102-191 8-98 (259)
347 PRK10309 galactitol-1-phosphat 68.7 36 0.00077 30.7 8.9 41 104-144 159-202 (347)
348 PRK06949 short chain dehydroge 68.7 56 0.0012 27.7 9.7 79 103-191 6-95 (258)
349 PRK05476 S-adenosyl-L-homocyst 68.3 57 0.0012 30.9 10.2 35 104-138 210-246 (425)
350 cd00401 AdoHcyase S-adenosyl-L 67.8 10 0.00022 35.8 5.1 41 104-144 200-242 (413)
351 TIGR03201 dearomat_had 6-hydro 67.8 10 0.00023 34.3 5.2 42 104-145 165-208 (349)
352 COG1893 ApbA Ketopantoate redu 67.7 39 0.00084 30.5 8.7 91 108-212 2-94 (307)
353 PF06859 Bin3: Bicoid-interact 67.4 5.9 0.00013 30.0 2.8 31 182-212 1-37 (110)
354 TIGR02825 B4_12hDH leukotriene 67.3 52 0.0011 29.2 9.6 41 104-144 137-180 (325)
355 PRK09291 short chain dehydroge 66.8 46 0.00099 28.2 8.8 76 106-191 2-82 (257)
356 PRK07102 short chain dehydroge 66.6 44 0.00094 28.2 8.6 75 107-190 2-84 (243)
357 PRK08945 putative oxoacyl-(acy 66.6 50 0.0011 27.9 9.0 81 103-190 9-100 (247)
358 cd08285 NADP_ADH NADP(H)-depen 66.4 49 0.0011 29.8 9.3 41 104-144 165-208 (351)
359 TIGR00675 dcm DNA-methyltransf 66.1 9.8 0.00021 34.4 4.6 40 109-148 1-41 (315)
360 PRK06125 short chain dehydroge 64.8 60 0.0013 27.7 9.2 79 104-191 5-90 (259)
361 PRK06124 gluconate 5-dehydroge 64.5 88 0.0019 26.5 13.4 79 103-191 8-97 (256)
362 TIGR01963 PHB_DH 3-hydroxybuty 64.3 46 0.001 28.1 8.3 75 107-191 2-87 (255)
363 PLN02740 Alcohol dehydrogenase 64.2 12 0.00026 34.4 4.9 42 104-145 197-241 (381)
364 PF11312 DUF3115: Protein of u 64.1 18 0.0004 32.6 5.7 46 105-150 86-155 (315)
365 COG4798 Predicted methyltransf 64.0 68 0.0015 27.2 8.6 31 104-134 47-79 (238)
366 COG0604 Qor NADPH:quinone redu 63.9 24 0.00052 32.0 6.7 41 104-144 141-184 (326)
367 PRK12826 3-ketoacyl-(acyl-carr 63.5 37 0.00079 28.6 7.5 79 105-193 5-94 (251)
368 PRK08339 short chain dehydroge 63.1 68 0.0015 27.6 9.3 78 104-190 6-93 (263)
369 KOG1201 Hydroxysteroid 17-beta 63.1 74 0.0016 28.6 9.2 77 102-189 34-121 (300)
370 TIGR02818 adh_III_F_hyde S-(hy 63.1 15 0.00032 33.7 5.2 42 104-145 184-228 (368)
371 PRK06139 short chain dehydroge 62.1 61 0.0013 29.3 9.0 78 104-191 5-93 (330)
372 COG3392 Adenine-specific DNA m 62.0 13 0.00029 32.7 4.3 36 102-138 24-59 (330)
373 PF01488 Shikimate_DH: Shikima 61.9 42 0.00092 26.0 7.0 77 103-195 9-88 (135)
374 PLN02514 cinnamyl-alcohol dehy 61.3 74 0.0016 28.9 9.5 37 104-140 179-217 (357)
375 TIGR02819 fdhA_non_GSH formald 61.1 1E+02 0.0023 28.5 10.6 42 104-145 184-228 (393)
376 KOG0822 Protein kinase inhibit 61.0 41 0.00088 32.8 7.6 95 106-212 368-471 (649)
377 PRK06172 short chain dehydroge 61.0 71 0.0015 27.0 8.9 79 104-192 5-94 (253)
378 PRK05708 2-dehydropantoate 2-r 60.7 63 0.0014 28.9 8.8 92 107-212 3-97 (305)
379 PRK08324 short chain dehydroge 60.7 87 0.0019 31.5 10.6 78 104-192 420-508 (681)
380 PRK08306 dipicolinate synthase 60.6 62 0.0013 28.9 8.6 40 104-143 150-191 (296)
381 cd05278 FDH_like Formaldehyde 60.6 34 0.00074 30.6 7.1 42 104-145 166-210 (347)
382 PRK07814 short chain dehydroge 60.5 64 0.0014 27.7 8.6 77 104-190 8-95 (263)
383 PRK07666 fabG 3-ketoacyl-(acyl 59.9 51 0.0011 27.7 7.7 76 105-190 6-92 (239)
384 cd08294 leukotriene_B4_DH_like 59.8 60 0.0013 28.6 8.5 42 104-145 142-186 (329)
385 PRK07576 short chain dehydroge 59.8 74 0.0016 27.3 8.9 77 104-190 7-94 (264)
386 PRK07533 enoyl-(acyl carrier p 59.6 59 0.0013 27.9 8.2 38 103-140 7-49 (258)
387 PF03269 DUF268: Caenorhabditi 59.4 8.2 0.00018 31.5 2.4 97 106-226 2-112 (177)
388 PRK05867 short chain dehydroge 59.4 1.1E+02 0.0024 25.9 10.4 80 103-192 6-96 (253)
389 PRK09242 tropinone reductase; 59.4 86 0.0019 26.6 9.2 81 103-191 6-97 (257)
390 PRK07774 short chain dehydroge 59.3 84 0.0018 26.4 9.1 79 104-192 4-93 (250)
391 PRK08862 short chain dehydroge 58.8 66 0.0014 27.2 8.2 76 105-190 4-91 (227)
392 PRK12548 shikimate 5-dehydroge 58.3 58 0.0012 29.0 8.0 79 104-193 124-210 (289)
393 KOG1198 Zinc-binding oxidoredu 57.2 17 0.00036 33.5 4.4 43 103-145 155-200 (347)
394 PRK08251 short chain dehydroge 57.1 90 0.002 26.2 8.9 77 106-190 2-89 (248)
395 PRK08085 gluconate 5-dehydroge 57.0 92 0.002 26.4 8.9 79 104-192 7-96 (254)
396 cd08265 Zn_ADH3 Alcohol dehydr 56.7 89 0.0019 28.7 9.3 41 104-144 202-245 (384)
397 cd01078 NAD_bind_H4MPT_DH NADP 56.4 83 0.0018 25.8 8.3 45 103-147 25-72 (194)
398 cd08234 threonine_DH_like L-th 56.1 86 0.0019 27.7 8.9 41 104-144 158-201 (334)
399 PF02558 ApbA: Ketopantoate re 55.7 95 0.0021 24.0 8.4 86 115-212 5-94 (151)
400 PRK07066 3-hydroxybutyryl-CoA 55.0 1.7E+02 0.0036 26.6 11.4 100 107-212 8-112 (321)
401 PRK05866 short chain dehydroge 54.8 79 0.0017 27.8 8.3 79 104-192 38-127 (293)
402 PF10354 DUF2431: Domain of un 54.7 1.2E+02 0.0025 24.7 8.7 63 180-249 73-149 (166)
403 PRK05872 short chain dehydroge 54.3 1.1E+02 0.0023 27.0 9.1 79 103-192 6-95 (296)
404 PRK06194 hypothetical protein; 54.3 60 0.0013 28.1 7.5 78 105-192 5-93 (287)
405 KOG2539 Mitochondrial/chloropl 54.2 16 0.00036 34.7 3.8 86 103-196 198-288 (491)
406 PRK12939 short chain dehydroge 54.1 1E+02 0.0022 25.8 8.7 77 104-190 5-92 (250)
407 COG1062 AdhC Zn-dependent alco 53.8 33 0.00071 31.5 5.5 44 102-145 182-228 (366)
408 PRK05599 hypothetical protein; 53.8 90 0.0019 26.5 8.3 76 108-192 2-87 (246)
409 PF05575 V_cholerae_RfbT: Vibr 53.6 10 0.00023 31.0 2.2 49 106-154 80-130 (286)
410 PRK06113 7-alpha-hydroxysteroi 53.6 1.2E+02 0.0026 25.7 9.1 78 104-191 9-97 (255)
411 PF00670 AdoHcyase_NAD: S-aden 53.4 47 0.001 27.0 6.0 32 104-137 21-56 (162)
412 PRK07063 short chain dehydroge 53.4 1.2E+02 0.0025 25.8 9.1 80 104-191 5-95 (260)
413 PRK12429 3-hydroxybutyrate deh 53.3 1.2E+02 0.0026 25.5 9.1 76 105-190 3-89 (258)
414 cd08236 sugar_DH NAD(P)-depend 53.1 1.1E+02 0.0023 27.3 9.1 41 104-144 158-201 (343)
415 cd08293 PTGR2 Prostaglandin re 52.8 89 0.0019 27.8 8.5 40 106-145 155-198 (345)
416 PRK08293 3-hydroxybutyryl-CoA 52.8 67 0.0014 28.3 7.5 40 108-147 5-46 (287)
417 KOG0023 Alcohol dehydrogenase, 52.5 71 0.0015 29.2 7.4 33 104-136 180-213 (360)
418 PRK05565 fabG 3-ketoacyl-(acyl 52.1 1.4E+02 0.003 24.9 11.6 77 105-191 4-92 (247)
419 PRK05854 short chain dehydroge 52.0 1.7E+02 0.0038 25.9 13.5 81 103-191 11-102 (313)
420 PRK07890 short chain dehydroge 51.8 1.1E+02 0.0025 25.8 8.7 78 105-192 4-92 (258)
421 PLN02662 cinnamyl-alcohol dehy 51.5 70 0.0015 28.2 7.6 77 105-189 3-83 (322)
422 KOG1099 SAM-dependent methyltr 51.5 51 0.0011 28.6 6.0 31 106-136 42-82 (294)
423 PF03435 Saccharop_dh: Sacchar 51.3 63 0.0014 29.8 7.4 69 109-190 1-75 (386)
424 PRK05650 short chain dehydroge 51.2 1.6E+02 0.0034 25.2 10.8 74 108-191 2-86 (270)
425 KOG3350 Uncharacterized conser 51.0 39 0.00085 28.1 5.1 56 162-226 116-172 (217)
426 PLN02253 xanthoxin dehydrogena 50.8 85 0.0018 27.1 7.8 77 103-190 15-102 (280)
427 PLN02827 Alcohol dehydrogenase 50.7 31 0.00067 31.8 5.2 41 104-144 192-235 (378)
428 PRK08265 short chain dehydroge 50.5 1.3E+02 0.0028 25.7 8.9 76 104-192 4-90 (261)
429 cd08301 alcohol_DH_plants Plan 50.3 30 0.00066 31.5 5.0 42 104-145 186-230 (369)
430 cd08300 alcohol_DH_class_III c 50.2 33 0.00072 31.3 5.3 41 104-144 185-228 (368)
431 cd01492 Aos1_SUMO Ubiquitin ac 49.5 1.5E+02 0.0033 24.6 9.3 30 105-136 20-53 (197)
432 PRK07454 short chain dehydroge 49.5 1.5E+02 0.0034 24.7 10.0 78 105-192 5-93 (241)
433 PF02737 3HCDH_N: 3-hydroxyacy 48.9 40 0.00086 27.7 5.1 92 109-212 2-107 (180)
434 cd01080 NAD_bind_m-THF_DH_Cycl 48.8 60 0.0013 26.5 6.0 49 73-136 26-76 (168)
435 TIGR03206 benzo_BadH 2-hydroxy 48.7 1.1E+02 0.0023 25.7 8.0 77 105-191 2-89 (250)
436 PRK05876 short chain dehydroge 48.5 1.3E+02 0.0028 26.1 8.6 78 104-191 4-92 (275)
437 PRK07677 short chain dehydroge 48.5 1.4E+02 0.0031 25.1 8.8 75 106-190 1-86 (252)
438 PRK07109 short chain dehydroge 48.3 2.1E+02 0.0045 25.8 13.4 79 104-192 6-95 (334)
439 PRK08217 fabG 3-ketoacyl-(acyl 48.2 1.6E+02 0.0035 24.5 9.1 77 105-191 4-91 (253)
440 PLN02657 3,8-divinyl protochlo 48.0 1.8E+02 0.004 26.9 9.9 77 103-189 57-143 (390)
441 PLN02989 cinnamyl-alcohol dehy 47.5 83 0.0018 27.9 7.4 77 106-190 5-85 (325)
442 PRK08643 acetoin reductase; Va 47.5 1.3E+02 0.0029 25.3 8.5 76 106-191 2-88 (256)
443 PRK07062 short chain dehydroge 47.5 1.8E+02 0.0038 24.8 10.4 81 104-192 6-97 (265)
444 cd08277 liver_alcohol_DH_like 47.1 38 0.00081 30.9 5.1 41 104-144 183-226 (365)
445 PRK08267 short chain dehydroge 47.0 1.8E+02 0.0039 24.7 11.5 73 107-191 2-86 (260)
446 PLN02896 cinnamyl-alcohol dehy 47.0 85 0.0018 28.4 7.4 76 104-190 8-87 (353)
447 PRK13394 3-hydroxybutyrate deh 46.7 1.8E+02 0.0038 24.5 9.4 79 104-192 5-94 (262)
448 PLN03154 putative allyl alcoho 46.4 40 0.00086 30.6 5.2 41 104-144 157-200 (348)
449 PTZ00075 Adenosylhomocysteinas 46.3 2.1E+02 0.0046 27.5 10.0 36 103-138 251-288 (476)
450 PRK05875 short chain dehydroge 46.0 1.3E+02 0.0028 25.9 8.2 79 104-190 5-94 (276)
451 PRK06138 short chain dehydroge 45.3 1.1E+02 0.0025 25.6 7.6 76 105-191 4-90 (252)
452 PRK06196 oxidoreductase; Provi 45.2 1.3E+02 0.0029 26.6 8.3 75 104-192 24-109 (315)
453 PRK07035 short chain dehydroge 45.1 1.9E+02 0.004 24.4 9.5 77 104-190 6-93 (252)
454 PRK08589 short chain dehydroge 45.0 2E+02 0.0043 24.8 9.2 79 104-192 4-92 (272)
455 PRK12829 short chain dehydroge 44.9 1.6E+02 0.0035 24.9 8.6 77 103-191 8-95 (264)
456 PRK07478 short chain dehydroge 44.5 1.9E+02 0.0042 24.3 9.0 77 105-191 5-92 (254)
457 PRK07024 short chain dehydroge 44.2 1.2E+02 0.0027 25.7 7.7 75 106-191 2-87 (257)
458 PF01210 NAD_Gly3P_dh_N: NAD-d 44.0 51 0.0011 26.3 4.9 89 109-212 2-96 (157)
459 COG4301 Uncharacterized conser 44.0 1.2E+02 0.0026 26.8 7.2 100 106-212 79-186 (321)
460 TIGR01470 cysG_Nterm siroheme 43.9 74 0.0016 26.8 6.0 34 103-136 6-40 (205)
461 PRK07097 gluconate 5-dehydroge 43.8 2E+02 0.0044 24.4 9.5 80 103-192 7-97 (265)
462 cd00755 YgdL_like Family of ac 43.3 1.2E+02 0.0025 26.2 7.3 32 105-136 10-43 (231)
463 PRK09186 flagellin modificatio 43.1 1.2E+02 0.0027 25.5 7.5 78 105-190 3-91 (256)
464 cd08238 sorbose_phosphate_red 42.9 44 0.00094 31.1 4.9 42 104-145 174-221 (410)
465 PF00106 adh_short: short chai 42.9 1.3E+02 0.0027 23.4 7.1 78 107-194 1-92 (167)
466 PF04072 LCM: Leucine carboxyl 42.8 93 0.002 25.4 6.4 45 107-151 80-125 (183)
467 KOG1209 1-Acyl dihydroxyaceton 42.6 92 0.002 26.9 6.2 71 105-188 6-87 (289)
468 PRK07889 enoyl-(acyl carrier p 42.5 1.1E+02 0.0023 26.2 7.1 33 104-136 5-41 (256)
469 PRK08594 enoyl-(acyl carrier p 42.3 1.4E+02 0.0031 25.5 7.8 33 104-136 5-41 (257)
470 PRK06940 short chain dehydroge 42.3 2.3E+02 0.0049 24.5 12.8 76 107-193 3-87 (275)
471 PRK08226 short chain dehydroge 42.3 1.9E+02 0.0041 24.5 8.6 78 104-192 4-92 (263)
472 TIGR01809 Shik-DH-AROM shikima 42.2 1.1E+02 0.0023 27.1 7.1 35 104-138 123-160 (282)
473 PRK13699 putative methylase; P 42.0 66 0.0014 27.6 5.5 41 198-248 51-92 (227)
474 PRK11064 wecC UDP-N-acetyl-D-m 42.0 1.5E+02 0.0033 27.8 8.4 35 107-143 4-42 (415)
475 cd05564 PTS_IIB_chitobiose_lic 42.0 1.3E+02 0.0029 21.8 7.1 27 180-212 44-70 (96)
476 COG0863 DNA modification methy 41.8 75 0.0016 27.8 6.1 48 103-151 220-268 (302)
477 KOG0022 Alcohol dehydrogenase, 41.7 53 0.0011 30.0 4.9 42 104-145 191-235 (375)
478 PRK06197 short chain dehydroge 41.6 2E+02 0.0044 25.2 8.9 81 103-191 13-104 (306)
479 PRK03369 murD UDP-N-acetylmura 41.6 45 0.00098 32.0 4.9 37 104-140 10-48 (488)
480 TIGR02354 thiF_fam2 thiamine b 41.6 2.1E+02 0.0045 23.9 9.0 33 104-136 19-53 (200)
481 COG2933 Predicted SAM-dependen 41.6 1.5E+02 0.0033 26.4 7.5 87 104-212 210-296 (358)
482 COG1179 Dinucleotide-utilizing 41.4 56 0.0012 28.6 4.9 40 104-143 28-70 (263)
483 PRK08277 D-mannonate oxidoredu 41.2 2.1E+02 0.0046 24.5 8.8 78 103-190 7-95 (278)
484 PRK00258 aroE shikimate 5-dehy 41.0 1.4E+02 0.003 26.3 7.6 43 104-146 121-166 (278)
485 PRK08644 thiamine biosynthesis 40.9 1.8E+02 0.0038 24.6 7.9 33 104-136 26-60 (212)
486 PRK00045 hemA glutamyl-tRNA re 40.9 1.5E+02 0.0033 27.9 8.3 38 103-140 179-219 (423)
487 cd08255 2-desacetyl-2-hydroxye 40.8 50 0.0011 28.4 4.7 41 104-144 96-139 (277)
488 PRK08303 short chain dehydroge 40.8 1.8E+02 0.0039 25.8 8.4 32 104-136 6-40 (305)
489 PRK06130 3-hydroxybutyryl-CoA 40.6 1.4E+02 0.0029 26.6 7.6 40 107-147 5-47 (311)
490 PRK12823 benD 1,6-dihydroxycyc 40.4 2.3E+02 0.0049 24.0 9.3 77 104-190 6-92 (260)
491 cd00757 ThiF_MoeB_HesA_family 40.4 1.1E+02 0.0023 26.1 6.6 32 105-136 20-53 (228)
492 PRK08416 7-alpha-hydroxysteroi 40.2 2.2E+02 0.0047 24.2 8.7 79 103-190 5-95 (260)
493 PRK07453 protochlorophyllide o 39.7 1.4E+02 0.003 26.5 7.6 77 105-191 5-92 (322)
494 TIGR03693 ocin_ThiF_like putat 39.6 2.4E+02 0.0053 28.2 9.4 82 102-189 125-211 (637)
495 PRK11524 putative methyltransf 39.3 30 0.00066 30.6 3.1 39 180-224 25-79 (284)
496 PRK06522 2-dehydropantoate 2-r 39.3 2.6E+02 0.0057 24.4 10.1 88 108-212 2-93 (304)
497 COG5379 BtaA S-adenosylmethion 39.2 72 0.0016 28.8 5.3 44 104-148 62-106 (414)
498 cd01487 E1_ThiF_like E1_ThiF_l 39.2 2.1E+02 0.0045 23.2 8.4 29 108-136 1-31 (174)
499 TIGR01832 kduD 2-deoxy-D-gluco 39.1 2.3E+02 0.005 23.7 8.7 78 104-192 3-90 (248)
500 PRK06114 short chain dehydroge 39.0 2.4E+02 0.0052 23.8 9.7 80 103-192 5-96 (254)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.95 E-value=8.9e-28 Score=198.75 Aligned_cols=169 Identities=39% Similarity=0.568 Sum_probs=99.1
Q ss_pred CceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEe
Q 023457 57 ESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTD 135 (282)
Q Consensus 57 ~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD 135 (282)
+..+.|+|....++|.++|+++.+|++||..+..... .....++++|||||||+|++|+.+++. .+++|++||
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~------~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD 76 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEF------NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTD 76 (173)
T ss_dssp --------------------HHHHHHHHHHH-------------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhccccc------chhhcCCceEEEECCccchhHHHHHhccCCceEEEec
Confidence 3567888888889999999999999999988642100 004567999999999999999999966 368999999
Q ss_pred hHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCC
Q 023457 136 LPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPE 215 (282)
Q Consensus 136 ~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~ 215 (282)
+++++++++.|++.|+.. ...++.+..++|++...... ....+||+||++||+|..+.++.|++++.++++++
T Consensus 77 ~~~~l~~l~~Ni~~N~~~---~~~~v~v~~L~Wg~~~~~~~-~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~--- 149 (173)
T PF10294_consen 77 YNEVLELLRRNIELNGSL---LDGRVSVRPLDWGDELDSDL-LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN--- 149 (173)
T ss_dssp -S-HHHHHHHHHHTT-----------EEEE--TTS-HHHHH-HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT----
T ss_pred cchhhHHHHHHHHhcccc---ccccccCcEEEecCcccccc-cccccCCEEEEecccchHHHHHHHHHHHHHHhCCC---
Confidence 944999999999998731 25689999999998321111 12458999999999999999999999999999998
Q ss_pred CCCceEEEEEEeecCcccHHHHHHHHhh
Q 023457 216 PKKKKMNFVMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 216 ~~~g~~~il~~~~~~~~~~~~f~~~~~~ 243 (282)
+. ++++. .+|......|++.+++
T Consensus 150 ---~~-vl~~~-~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 150 ---GK-VLLAY-KRRRKSEQEFFDRLKK 172 (173)
T ss_dssp ---TT-EEEEE-E-S-TGGCHHHHHH--
T ss_pred ---CE-EEEEe-CEecHHHHHHHHHhhh
Confidence 45 55554 4556667889998764
No 2
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.84 E-value=7.4e-20 Score=157.16 Aligned_cols=197 Identities=44% Similarity=0.545 Sum_probs=152.6
Q ss_pred cceeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCC--CCCcEEEeCCCCCHHHHHHH
Q 023457 47 ETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNG--CQLNILELGSGTGLVGMAAA 124 (282)
Q Consensus 47 ~~~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~--~g~~VLELGcGtG~~si~la 124 (282)
..+.+..+...+.+.+...+..+....+|+++..++.++..+... ++...+...+ +..+|||||+|||++|+.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~---~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa 105 (248)
T KOG2793|consen 29 EIQLGGIKSEESKTVIESGLEQGISAYLWSCATTLAQPLWERRRD---SELTATLIGFKTKYINVLELGSGTGLVGILAA 105 (248)
T ss_pred eeeeccccccceeeecccccccceeeEEeehhhccchhhhhhhcC---chhhhccccccccceeEEEecCCccHHHHHHH
Confidence 566677777777777777788899999999999999999776642 2222222212 46679999999999999999
Q ss_pred HHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC-ccEEEEcCccCCCCCHHHHHH
Q 023457 125 AILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE-FDVILASDVVYHDHLFDPLLV 203 (282)
Q Consensus 125 ~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~-fD~Ii~sd~ly~~~~~~~ll~ 203 (282)
..+++.|+.+|.+..+..++.|...|..........+.+..|+|+.. .+.....+. ||+|+++||+|+++.++.++.
T Consensus 106 ~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~--~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~ 183 (248)
T KOG2793|consen 106 LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNA--LDVSFRLPNPFDLILASDVVYEEESFEGLVK 183 (248)
T ss_pred HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCc--ccHhhccCCcccEEEEeeeeecCCcchhHHH
Confidence 88899999999988888888887777765544566899999999994 333333444 999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEEEEEeecCc---ccHHHHHHHHhhcCceEEEcccCC
Q 023457 204 TLRLFLNSGEPEPKKKKMNFVMAHLRRW---KKDSVFFKKAKKLFDVETIHADLP 255 (282)
Q Consensus 204 ~l~~ll~~g~~~~~~g~~~il~~~~~~~---~~~~~f~~~~~~~f~ve~v~~~~~ 255 (282)
++..++..+ + .++++++.|+. ..+..|+......|++........
T Consensus 184 tla~ll~~~------~-~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (248)
T KOG2793|consen 184 TLAFLLAKD------G-TIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQESFFKD 231 (248)
T ss_pred HHHHHHhcC------C-eEEEEEecccchHHHHHHHHhhhhhccceeeeEeccCc
Confidence 999999988 4 78888888874 335555555556788877665544
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=4.9e-18 Score=134.50 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=117.0
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCC-CCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSG-TGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcG-tG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+||+..+|+.++.+.. ....|++|||||.| ||+.|+++|.... ..|..||. ...++++++-+.
T Consensus 8 vciwpseeala~~~l~~~------------n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRDP------------NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred EEecccHHHHHHHHHhch------------hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHh
Confidence 479999999999997765 34679999999999 7999999985443 78999999 999999999888
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.|... ...++.+....|.. .. ......+||+|+++||+|..+..+.|+++|+.+|+|. |+ .+++++
T Consensus 76 ~n~~s---~~tsc~vlrw~~~~--aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~------g~-Al~fsP- 141 (201)
T KOG3201|consen 76 SNMAS---SLTSCCVLRWLIWG--AQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPS------GR-ALLFSP- 141 (201)
T ss_pred ccccc---ccceehhhHHHHhh--hH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcc------cc-eeEecC-
Confidence 87421 12334333333332 21 1122458999999999999999999999999999998 56 454544
Q ss_pred cCcccHHHHHHHHhh-cCceEEE
Q 023457 229 RRWKKDSVFFKKAKK-LFDVETI 250 (282)
Q Consensus 229 ~~~~~~~~f~~~~~~-~f~ve~v 250 (282)
||-.+.+.|.+.+.. ||.++.-
T Consensus 142 RRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred cccchHHHHHHHHHhceeEEEec
Confidence 555678999998874 8888643
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=131.03 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=131.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
--+..|+.|... ...++|||||||+|.+++++|++.. ++|+++|+ +.+.+.+++|++.|..
T Consensus 31 ~DaiLL~~~~~~----------------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l- 93 (248)
T COG4123 31 TDAILLAAFAPV----------------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL- 93 (248)
T ss_pred cHHHHHHhhccc----------------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-
Confidence 357888888822 2377999999999999999997755 89999999 9999999999999984
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC------------------CHHHHHHHHHHHHhcCCCC
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH------------------LFDPLLVTLRLFLNSGEPE 215 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~------------------~~~~ll~~l~~ll~~g~~~ 215 (282)
..++.+.+.|..+.... ....+||+|+|+.+.|... .++.+++...++|+++
T Consensus 94 ----~~ri~v~~~Di~~~~~~---~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~--- 163 (248)
T COG4123 94 ----EERIQVIEADIKEFLKA---LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG--- 163 (248)
T ss_pred ----hhceeEehhhHHHhhhc---ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC---
Confidence 77899988777663211 1134699999999988532 3889999999999999
Q ss_pred CCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccceEEEEEeeecC
Q 023457 216 PKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 216 ~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~~~v~~~~~~~~ 273 (282)
|.++++.. .+....+++.+.+ +|...++..-.+..+......+.+..|..+
T Consensus 164 ---G~l~~V~r----~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 164 ---GRLAFVHR----PERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred ---CEEEEEec----HHHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 77777643 3445778888876 899999999999888888888888877654
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.67 E-value=2e-15 Score=124.52 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=97.0
Q ss_pred EEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-Hh
Q 023457 61 VIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PH 138 (282)
Q Consensus 61 ~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~ 138 (282)
++...++.--...+-.++.+|++++.... +++|||||||+|.+++.+++..+. +|+++|+ +.
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~~----------------~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~ 66 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKHK----------------GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD 66 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHHT----------------TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhcc----------------CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 34444432223456778999999996642 669999999999999999976654 7999999 99
Q ss_pred HHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC-----HHHHHHHHHHHHhcCC
Q 023457 139 VLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL-----FDPLLVTLRLFLNSGE 213 (282)
Q Consensus 139 ~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~-----~~~ll~~l~~ll~~g~ 213 (282)
+++.+++|+..|+. .. +.+...|+.+ ... ..+||+|+++.+++.... ...+++...++|+++
T Consensus 67 a~~~a~~n~~~n~~-----~~-v~~~~~d~~~----~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~- 133 (170)
T PF05175_consen 67 ALELAKRNAERNGL-----EN-VEVVQSDLFE----ALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG- 133 (170)
T ss_dssp HHHHHHHHHHHTTC-----TT-EEEEESSTTT----TCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE-
T ss_pred HHHHHHHHHHhcCc-----cc-cccccccccc----ccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC-
Confidence 99999999999985 22 6666655544 111 478999999999875543 678899999999998
Q ss_pred CCCCCceEEEEEE
Q 023457 214 PEPKKKKMNFVMA 226 (282)
Q Consensus 214 ~~~~~g~~~il~~ 226 (282)
|.++++..
T Consensus 134 -----G~l~lv~~ 141 (170)
T PF05175_consen 134 -----GRLFLVIN 141 (170)
T ss_dssp -----EEEEEEEE
T ss_pred -----CEEEEEee
Confidence 66656544
No 6
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=3.7e-16 Score=127.81 Aligned_cols=130 Identities=25% Similarity=0.323 Sum_probs=106.8
Q ss_pred ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 70 LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 70 ~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
++...|.++++||+|+..+.. ..+|++|||+|+|+|++++++++.+++.|+++|+ +..+..++.|++
T Consensus 56 fwa~~WagG~~lAR~i~~~Pe------------tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 56 FWAFAWAGGQVLARYIDDHPE------------TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred HHHHHHhhhHHHHHHHhcCcc------------ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence 467999999999999988773 4689999999999999999999888889999999 999999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.|+. .+.+...+... .+..||+|+++|++|+......++.+..++...| ..+++..+.
T Consensus 124 angv-------~i~~~~~d~~g--------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g-------~~vlvgdp~ 181 (218)
T COG3897 124 ANGV-------SILFTHADLIG--------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG-------AAVLVGDPG 181 (218)
T ss_pred hccc-------eeEEeeccccC--------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCC-------CEEEEeCCC
Confidence 9985 33344332221 2578999999999999999999999777777665 667777776
Q ss_pred cCccc
Q 023457 229 RRWKK 233 (282)
Q Consensus 229 ~~~~~ 233 (282)
|.+-.
T Consensus 182 R~~lp 186 (218)
T COG3897 182 RAYLP 186 (218)
T ss_pred CCCCc
Confidence 76654
No 7
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.65 E-value=3.1e-15 Score=132.93 Aligned_cols=154 Identities=20% Similarity=0.341 Sum_probs=111.8
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.|.-.++..+|+...+++....++|..+. .+|++|||+|||||.+++++++.++.+|+++|+
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~--------------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiD 193 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV--------------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDID 193 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS--------------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESS
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc--------------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCC
Confidence 45667777888888889999999999998864 347899999999999999999766679999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.++.|+..|+. ..++.+. . ..+. ...+||+|+++-.. ..+..+...+.++++|+
T Consensus 194 p~Av~~a~~N~~~N~~-----~~~~~v~-----~--~~~~--~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~---- 252 (295)
T PF06325_consen 194 PLAVEAARENAELNGV-----EDRIEVS-----L--SEDL--VEGKFDLVVANILA---DVLLELAPDIASLLKPG---- 252 (295)
T ss_dssp CHHHHHHHHHHHHTT------TTCEEES-----C--TSCT--CCS-EEEEEEES-H---HHHHHHHHHCHHHEEEE----
T ss_pred HHHHHHHHHHHHHcCC-----CeeEEEE-----E--eccc--ccccCCEEEECCCH---HHHHHHHHHHHHhhCCC----
Confidence 9999999999999996 3344432 1 1111 13789999997332 33456777788889987
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+.++++.-... ....+.+.++++|.+....
T Consensus 253 ---G~lIlSGIl~~--~~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 253 ---GYLILSGILEE--QEDEVIEAYKQGFELVEER 282 (295)
T ss_dssp ---EEEEEEEEEGG--GHHHHHHHHHTTEEEEEEE
T ss_pred ---CEEEEccccHH--HHHHHHHHHHCCCEEEEEE
Confidence 55666655443 3455666666688776554
No 8
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-14 Score=126.44 Aligned_cols=190 Identities=22% Similarity=0.269 Sum_probs=127.4
Q ss_pred CCccccccCCCCCCCccceeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEE
Q 023457 31 LPMAMLTQDTLTSSSSETEQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNIL 110 (282)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VL 110 (282)
...||.+.++.+............ ...+.+...++.--..++..++.+|.+-|.. ..+.+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----------------~~~~~vl 163 (300)
T COG2813 102 MRLHYYSENPPPFADEPEWKVYLL--GHELTFKTLPGVFSRDKLDKGSRLLLETLPP----------------DLGGKVL 163 (300)
T ss_pred ceeEeecCCCCcccchhhhhhhhc--cCceEEEeCCCCCcCCCcChHHHHHHHhCCc----------------cCCCcEE
Confidence 345555554444444433333333 3445555545433356788899998887732 2244999
Q ss_pred EeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE
Q 023457 111 ELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA 188 (282)
Q Consensus 111 ELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~ 188 (282)
|||||.|.+|+.+++..+ .+++.+|. ..+++.+++|+..|+.. ...+..-+. ......+||.||+
T Consensus 164 DlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~------~~~v~~s~~-------~~~v~~kfd~Iis 230 (300)
T COG2813 164 DLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE------NTEVWASNL-------YEPVEGKFDLIIS 230 (300)
T ss_pred EeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC------ccEEEEecc-------cccccccccEEEe
Confidence 999999999999997775 79999999 89999999999999852 212222111 1122348999999
Q ss_pred cCccCCCCC-----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccc
Q 023457 189 SDVVYHDHL-----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVG 262 (282)
Q Consensus 189 sd~ly~~~~-----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~ 262 (282)
+.+++.-.. .+.++....+.|++| |.+.|+.. +. ..+...+++-| +++.+. ...+
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~g------GeL~iVan---~~---l~y~~~L~~~Fg~v~~la-------~~~g 291 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPG------GELWIVAN---RH---LPYEKKLKELFGNVEVLA-------KNGG 291 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccC------CEEEEEEc---CC---CChHHHHHHhcCCEEEEE-------eCCC
Confidence 999996433 347899999999998 67777665 22 22334455556 488888 4467
Q ss_pred eEEEEEee
Q 023457 263 VVVYRMTG 270 (282)
Q Consensus 263 ~~v~~~~~ 270 (282)
+.||+..|
T Consensus 292 f~Vl~a~k 299 (300)
T COG2813 292 FKVLRAKK 299 (300)
T ss_pred EEEEEEec
Confidence 88888765
No 9
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.5e-14 Score=126.18 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=117.7
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.|+..++..+|+...+.+....++|++.. .+|++|||+|||+|.++|++++.++++|+++|+
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~--------------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD 194 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL--------------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDID 194 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhh--------------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCC
Confidence 46778888888888889999999999998865 358999999999999999998766678999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
|.+++.++.|+..|+... .+... +.. ..... ...+||+|+++=.- .-+..|...+.++++||
T Consensus 195 p~AV~aa~eNa~~N~v~~-----~~~~~---~~~--~~~~~-~~~~~DvIVANILA---~vl~~La~~~~~~lkpg---- 256 (300)
T COG2264 195 PQAVEAARENARLNGVEL-----LVQAK---GFL--LLEVP-ENGPFDVIVANILA---EVLVELAPDIKRLLKPG---- 256 (300)
T ss_pred HHHHHHHHHHHHHcCCch-----hhhcc---ccc--chhhc-ccCcccEEEehhhH---HHHHHHHHHHHHHcCCC----
Confidence 999999999999998631 11111 111 11111 13589999997422 34568888899999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEccc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIHAD 253 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~~~ 253 (282)
+.++++.-... ......+.+ +++|.+..+..+
T Consensus 257 ---g~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 257 ---GRLILSGILED--QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ---ceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEec
Confidence 55666664444 246666666 469998876643
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.60 E-value=6.5e-15 Score=124.95 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=89.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|++|||+|||-|.++..+| +.|+.|+++|. +.+++.++.....++.. ++|.....+++....++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------------i~y~~~~~edl~~~~~~ 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGVN------------IDYRQATVEDLASAGGQ 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhcccc------------ccchhhhHHHHHhcCCC
Confidence 569999999999999999998 56799999999 99999999988887642 34444334455544579
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK 232 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~ 232 (282)
||+|+|.+|+.|.++.+.+++++.++++|+ +.++++...|+..
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~-------G~lf~STinrt~k 167 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPG-------GILFLSTINRTLK 167 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHcCCC-------cEEEEeccccCHH
Confidence 999999999999999999999999999998 6667676555543
No 11
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=1.6e-13 Score=125.99 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=115.8
Q ss_pred eeeecCCCCceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC
Q 023457 49 EQHYMPSIESTLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG 128 (282)
Q Consensus 49 ~~~~~~~~~~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~ 128 (282)
..|.+++ ..+.+...++.--+.++..++.+|.++|.. ..+.+|||||||+|.+++.+++..+
T Consensus 190 ~~~~~~~--~~~~~~~~~gVFs~~~LD~GtrllL~~lp~----------------~~~~~VLDLGCGtGvi~i~la~~~P 251 (378)
T PRK15001 190 VSWKLEG--TDWTIHNHANVFSRTGLDIGARFFMQHLPE----------------NLEGEIVDLGCGNGVIGLTLLDKNP 251 (378)
T ss_pred eEEEEcC--ceEEEEecCCccCCCCcChHHHHHHHhCCc----------------ccCCeEEEEeccccHHHHHHHHhCC
Confidence 3344443 334444333322256788899888887722 1245999999999999999987664
Q ss_pred -CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC-----CHHHH
Q 023457 129 -AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH-----LFDPL 201 (282)
Q Consensus 129 -~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~-----~~~~l 201 (282)
.+|+++|. +.+++.++.|++.|+... ..++.+..-|... .+ ...+||+|+++.+++... ....+
T Consensus 252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~~v~~~~~D~l~----~~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 252 QAKVVFVDESPMAVASSRLNVETNMPEA---LDRCEFMINNALS----GV--EPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCccc---CceEEEEEccccc----cC--CCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 69999999 899999999999886310 1234443322211 11 134799999998876432 35678
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccceEEEEEeeec
Q 023457 202 LVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVGVVVYRMTGKA 272 (282)
Q Consensus 202 l~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~~~v~~~~~~~ 272 (282)
++.+.+.|++| |.++++. .+..+ +...+++.| .++.+. ...+++||+..|.+
T Consensus 323 ~~~a~~~LkpG------G~L~iV~--nr~l~----y~~~L~~~fg~~~~va-------~~~kf~vl~a~k~~ 375 (378)
T PRK15001 323 FHHARRCLKIN------GELYIVA--NRHLD----YFHKLKKIFGNCTTIA-------TNNKFVVLKAVKLG 375 (378)
T ss_pred HHHHHHhcccC------CEEEEEE--ecCcC----HHHHHHHHcCCceEEc-------cCCCEEEEEEEeCC
Confidence 88999999998 6666653 23322 223344434 556554 45678899887743
No 12
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.52 E-value=1.1e-12 Score=119.46 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=111.5
Q ss_pred EEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-H
Q 023457 60 LVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-P 137 (282)
Q Consensus 60 i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~ 137 (282)
+.+...++.-....+..++..|.+.+.. ....+|||||||+|.+++.+++..+ .+|+++|+ +
T Consensus 167 l~i~~~pgvFs~~~lD~gt~lLl~~l~~----------------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~ 230 (342)
T PRK09489 167 LTVKTLPGVFSRDGLDVGSQLLLSTLTP----------------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA 230 (342)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHhccc----------------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH
Confidence 4444444333344566777777776632 1234899999999999999986654 58999999 9
Q ss_pred hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC-----CCHHHHHHHHHHHHhcC
Q 023457 138 HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD-----HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 138 ~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~-----~~~~~ll~~l~~ll~~g 212 (282)
.+++.++.|+..|+.. ..+...|... ...++||+|+++.+++.. ...+.+++.+.+.|++|
T Consensus 231 ~Al~~A~~nl~~n~l~-------~~~~~~D~~~-------~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 231 AALESSRATLAANGLE-------GEVFASNVFS-------DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred HHHHHHHHHHHHcCCC-------CEEEEccccc-------ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence 9999999999998741 1222222111 124689999999888752 34578999999999999
Q ss_pred CCCCCCceEEEEEEeecCcccHHHHHHHHhhcC-ceEEEcccCCCCCcccceEEEEEeeecCC
Q 023457 213 EPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLF-DVETIHADLPCNGARVGVVVYRMTGKAKS 274 (282)
Q Consensus 213 ~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f-~ve~v~~~~~~~~~~~~~~v~~~~~~~~~ 274 (282)
|.++++......+ .. .+++.| .++.+. ...++.||+..|.|..
T Consensus 297 ------G~L~iVan~~l~y---~~---~l~~~Fg~~~~la-------~~~~f~v~~a~~~~~~ 340 (342)
T PRK09489 297 ------GELRIVANAFLPY---PD---LLDETFGSHEVLA-------QTGRFKVYRAIMTRQA 340 (342)
T ss_pred ------CEEEEEEeCCCCh---HH---HHHHHcCCeEEEE-------eCCCEEEEEEEccCcC
Confidence 7777765433332 22 223334 456665 3356789998876643
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.51 E-value=1.4e-13 Score=105.10 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++. .+.+|+++|+ +.+++.+++++..++. ..++.+..-|+ . .......+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~----~~~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E----FDPDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H----GGTTTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c----cCcccCCC
Confidence 3779999999999999999963 5689999999 9999999999965553 56888888666 1 11112457
Q ss_pred ccEEEEcC-ccCC---CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASD-VVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd-~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.. ++.+ .+....+++.+.++|+||
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 99999988 3321 245678899999999998
No 14
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=2.4e-12 Score=107.01 Aligned_cols=125 Identities=25% Similarity=0.316 Sum_probs=90.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.+++.++... .+|+++|+ +.+++.+++|+..++. .+.+...|+.+. ...+|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~-------~~~~f 83 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV-------GLDVVMTDLFKG-------VRGKF 83 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcccccc-------cCCcc
Confidence 36689999999999999998554 59999999 9999999999987653 345555554331 13589
Q ss_pred cEEEEcCccCCCCC---------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHDHL---------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~~~---------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+|+++.++++... +..+++.+.++|+|| |.++++....++ ...+++.++
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g------G~~~~~~~~~~~---~~~~~~~l~ 154 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG------GRVQLIQSSLNG---EPDTFDKLD 154 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC------CEEEEEEeccCC---hHHHHHHHH
Confidence 99999987654321 467889999999998 666555433332 345555554
Q ss_pred -hcCceEEEccc
Q 023457 243 -KLFDVETIHAD 253 (282)
Q Consensus 243 -~~f~ve~v~~~ 253 (282)
.+|.++.+...
T Consensus 155 ~~gf~~~~~~~~ 166 (179)
T TIGR00537 155 ERGFRYEIVAER 166 (179)
T ss_pred hCCCeEEEEEEe
Confidence 58999887743
No 15
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.48 E-value=2.3e-12 Score=115.09 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=108.2
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.+...++..+|+..++.+....++|.... .++++|||+|||+|.+++.+++.++.+|+++|+
T Consensus 126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~--------------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid 191 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD--------------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDID 191 (288)
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHhhc--------------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECC
Confidence 34556666777777778898888888886543 247899999999999999988655569999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.+++|+..|+. ..++.+...+. ......+||+|+++-+. ..+..++..+.++|+||
T Consensus 192 ~~al~~a~~n~~~n~~-----~~~~~~~~~~~-------~~~~~~~fDlVvan~~~---~~l~~ll~~~~~~Lkpg---- 252 (288)
T TIGR00406 192 PLAVESARKNAELNQV-----SDRLQVKLIYL-------EQPIEGKADVIVANILA---EVIKELYPQFSRLVKPG---- 252 (288)
T ss_pred HHHHHHHHHHHHHcCC-----CcceEEEeccc-------ccccCCCceEEEEecCH---HHHHHHHHHHHHHcCCC----
Confidence 9999999999998874 22333332111 11124689999997442 34567889999999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|. ++++.... .....+.+.+++.|++..+.
T Consensus 253 --G~-li~sgi~~--~~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 253 --GW-LILSGILE--TQAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred --cE-EEEEeCcH--hHHHHHHHHHHccCceeeEe
Confidence 44 44444322 23455666666557666543
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.47 E-value=4e-13 Score=116.14 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+|.+|||+|||||.+++.+++..+ .+|+++|+ +.|++.+++++...+. .++.+.. .+.++++..++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~-----~da~~lp~~d~ 115 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQ-----GDAEDLPFPDN 115 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE------BTTB--S-TT
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEE-----cCHHHhcCCCC
Confidence 477999999999999999986544 69999999 9999999999887552 2454444 33555666678
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
+||+|+++..+.+..+....++.+.|+|+|| |.++++-......
T Consensus 116 sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG------G~l~ile~~~p~~ 159 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFPDRERALREMYRVLKPG------GRLVILEFSKPRN 159 (233)
T ss_dssp -EEEEEEES-GGG-SSHHHHHHHHHHHEEEE------EEEEEEEEEB-SS
T ss_pred ceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC------eEEEEeeccCCCC
Confidence 9999999999999999999999999999999 7777766554443
No 17
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.2e-13 Score=118.15 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=81.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.|++|||+|||+|+++..+| +.+++|+++|. +++++.++.....+... ...+ ...+.+.+.+ .+...+.|
T Consensus 89 ~g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~----~~~~-~y~l~~~~~~---~E~~~~~f 159 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVL----EGAI-AYRLEYEDTD---VEGLTGKF 159 (282)
T ss_pred CCceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchh----cccc-ceeeehhhcc---hhhccccc
Confidence 47899999999999999998 66799999999 99999998875544332 1111 1222333221 22234679
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
|.|+|++++.|..++..++..+.++|+|+ |. +|+..-.|.
T Consensus 160 DaVvcsevleHV~dp~~~l~~l~~~lkP~------G~-lfittinrt 199 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDPQEFLNCLSALLKPN------GR-LFITTINRT 199 (282)
T ss_pred ceeeeHHHHHHHhCHHHHHHHHHHHhCCC------Cc-eEeeehhhh
Confidence 99999999999999999999999999998 45 455544343
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=1.8e-12 Score=117.01 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=78.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++ ..+++|+++|. +.+++.++.+...+.. ..++.+...+ ..+++....+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~d-----ae~l~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTT-----AEKLADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecC-----HHHhhhccCC
Confidence 467899999999999999987 45789999999 9999999987665432 2244444432 2233333568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.++++|..+...+++.+.++|+||
T Consensus 199 FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 199 FDAVLSLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred CCEEEEhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=8.1e-13 Score=113.70 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+|.+|||+|||||-.++.+++..+ ++|+++|+ +.||+.+++.+...+. . .+ .|...+.+.++..+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----~-~i-----~fv~~dAe~LPf~D~s 119 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----Q-NV-----EFVVGDAENLPFPDNS 119 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----c-ce-----EEEEechhhCCCCCCc
Confidence 589999999999999999986654 79999999 9999999998875432 1 13 3334446678878899
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR 229 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~ 229 (282)
||+|.++..+.+..+.+.+|+.+.|+|+|| |+++++--...
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpg------G~~~vle~~~p 160 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPG------GRLLVLEFSKP 160 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCC------eEEEEEEcCCC
Confidence 999999999999999999999999999999 66666554433
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=5.7e-12 Score=106.39 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|+. +.+|+++|+ +.+++.+++++..++. .++.+...|+.+ +. ....|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~-----~~-~~~~f 96 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNN-----LT-FDGEY 96 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhh-----CC-cCCCc
Confidence 4679999999999999999854 689999999 9999999998887653 234555544433 11 13579
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++|+.. ....+++.+.++|+|| |.++++.
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg------G~~~~~~ 134 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPG------GYNLIVA 134 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCC------cEEEEEE
Confidence 9999999987643 5789999999999999 6655544
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=2e-12 Score=104.55 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=81.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..++.++... +++|+++|+ +.+++.++.++..++. .++.+...|+.+.... + ..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~-~---~~ 72 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQE-L---EE 72 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGC-S---ST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccc-c---CC
Confidence 47799999999999999998433 479999999 9999999999988763 3788888776651110 1 26
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++.++++......+++.+.++++++
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999998
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.41 E-value=4e-12 Score=116.10 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.+++++..++. ..++.+...|..+ ++..++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~-----~~~~~~~ 186 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALN-----QPFEDGQ 186 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCccc-----CCCCCCC
Confidence 457899999999999999998777789999999 9999999998887663 3456666655433 2333578
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++..+++|..+...+++.+.++|+|| |.+++..
T Consensus 187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG------G~lvi~~ 223 (340)
T PLN02244 187 FDLVWSMESGEHMPDKRKFVQELARVAAPG------GRIIIVT 223 (340)
T ss_pred ccEEEECCchhccCCHHHHHHHHHHHcCCC------cEEEEEE
Confidence 999999999999999999999999999999 6666543
No 23
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=1.8e-11 Score=107.10 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=103.7
Q ss_pred ceEEEEEeCCCCccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-
Q 023457 58 STLVIRQLPSQGLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL- 136 (282)
Q Consensus 58 ~~i~i~~~~~~g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~- 136 (282)
..+.+...++..+|...++.+..+.+++.... .++++|||+|||+|.+++.+++.+..+|+++|+
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~--------------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis 151 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLV--------------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID 151 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhc--------------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC
Confidence 34555666666667678999988888886532 247899999999999999887554457999999
Q ss_pred HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 023457 137 PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEP 216 (282)
Q Consensus 137 ~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~ 216 (282)
+.+++.+++|+..|+. ...+.+. .. ..+||+|+++-.. ..+..++..+.++|+||
T Consensus 152 ~~~l~~A~~n~~~~~~-----~~~~~~~-----~~--------~~~fD~Vvani~~---~~~~~l~~~~~~~Lkpg---- 206 (250)
T PRK00517 152 PQAVEAARENAELNGV-----ELNVYLP-----QG--------DLKADVIVANILA---NPLLELAPDLARLLKPG---- 206 (250)
T ss_pred HHHHHHHHHHHHHcCC-----CceEEEc-----cC--------CCCcCEEEEcCcH---HHHHHHHHHHHHhcCCC----
Confidence 9999999999998874 1222211 10 1269999986332 34567888999999998
Q ss_pred CCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEcc
Q 023457 217 KKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHA 252 (282)
Q Consensus 217 ~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~ 252 (282)
|. +++..... .....+...+. .+|.+..+..
T Consensus 207 --G~-lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 207 --GR-LILSGILE--EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --cE-EEEEECcH--hhHHHHHHHHHHCCCEEEEEEE
Confidence 44 44443222 23345555554 4788776553
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.39 E-value=2.8e-11 Score=101.23 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=90.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||||||+|..++.++... +.+|+++|. +.+++.+++|++.++. .++.+...+..+ +.. ..+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~-----~~~-~~~f 113 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEE-----FGQ-EEKF 113 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhh-----CCC-CCCc
Confidence 7899999999999999988544 479999999 9999999999998874 236666655433 222 4689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEE-cccCCCCCcc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETI-HADLPCNGAR 260 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v-~~~~~~~~~~ 260 (282)
|+|++.. ...++.+++.+.++|+|| |.++++.. .. ....+.+..+ .|+.++.+ ....+.-++.
T Consensus 114 DlV~~~~----~~~~~~~l~~~~~~LkpG------G~lv~~~~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (187)
T PRK00107 114 DVVTSRA----VASLSDLVELCLPLLKPG------GRFLALKG--RD--PEEEIAELPKALGGKVEEVIELTLPGLDGE 178 (187)
T ss_pred cEEEEcc----ccCHHHHHHHHHHhcCCC------eEEEEEeC--CC--hHHHHHHHHHhcCceEeeeEEEecCCCCCc
Confidence 9999864 246789999999999998 56555532 22 3344554444 38877543 3444433333
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=3.8e-12 Score=111.58 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=91.4
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
...+|++|||||||.|.+++.+|+..+.+|+++++ ++..+.+++.+..-++ ..++++.-.||.+. .
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~--------~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDF--------E 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEecccccc--------c
Confidence 45679999999999999999999888999999999 8999999999988775 45788888888772 3
Q ss_pred CCccEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
++||-|++..++.|... ++.+++.+.++|+|+ |.+++-+..
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~------G~~llh~I~ 178 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG------GRMLLHSIT 178 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC------ceEEEEEec
Confidence 45999999999998665 999999999999999 666554443
No 26
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=2.7e-11 Score=100.83 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=98.4
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-++-+.+|++++.. .++++|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+..++.
T Consensus 8 p~~~~~~l~~~~~~----------------~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 8 PAEDSFLLAENAVD----------------KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred cchhHHHHHHhhhc----------------cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 35566777777632 24779999999999999999865 799999999 9999999999988764
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC---------------------CCHHHHHHHHHHHHhc
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD---------------------HLFDPLLVTLRLFLNS 211 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~---------------------~~~~~ll~~l~~ll~~ 211 (282)
. ...+.+...|+.+ .+ ....||+|+++.+++.. ..+..+++.+.++|++
T Consensus 71 ~----~~~~~~~~~d~~~----~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~ 140 (188)
T PRK14968 71 R----NNGVEVIRSDLFE----PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP 140 (188)
T ss_pred C----CcceEEEeccccc----cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC
Confidence 2 1115555555543 11 12379999998765541 1245688999999999
Q ss_pred CCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEccc
Q 023457 212 GEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 212 g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~~~ 253 (282)
+ |.++++...... ...+...+. .+|.+..+...
T Consensus 141 g------G~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 141 G------GRILLLQSSLTG---EDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred C------eEEEEEEcccCC---HHHHHHHHHHCCCeeeeeeec
Confidence 8 666665543222 234444444 48887766543
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=5.8e-12 Score=110.54 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~f 183 (282)
+.+|||+|||+|..++.++. .+.+|+++|+ +.+++.+++++...+. ..++.+...+..+ +. .....|
T Consensus 45 ~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~-----l~~~~~~~f 113 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD-----IAQHLETPV 113 (255)
T ss_pred CCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH-----HhhhcCCCC
Confidence 67999999999999999985 4689999999 9999999999887653 2345555544332 21 225689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|++..++++..+...+++.+.++|+||
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCC
Confidence 99999999999889999999999999998
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.38 E-value=1.8e-12 Score=95.36 Aligned_cols=89 Identities=27% Similarity=0.349 Sum_probs=71.2
Q ss_pred EEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE
Q 023457 110 LELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA 188 (282)
Q Consensus 110 LELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~ 188 (282)
||||||+|..+..+++..+.+|+++|+ +.+++.++++..... +.+...+ ...++..+..||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------~~~~~~d-----~~~l~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------VSFRQGD-----AEDLPFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------EEEEESB-----TTSSSS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------chheeeh-----HHhCcccccccccccc
Confidence 899999999999998664789999999 899999988765432 3344433 3344555789999999
Q ss_pred cCccCCCCCHHHHHHHHHHHHhcC
Q 023457 189 SDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 189 sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++++.++...+++.+.++|+|+
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHEEEE
T ss_pred ccceeeccCHHHHHHHHHHHcCcC
Confidence 999999999999999999999998
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=1.4e-11 Score=102.70 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|.+++.++...+ ++|+++|. +.+++.+++|++.++. .++.+...++.+ +. ...+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~-----~~-~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAED-----FQ-HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhh-----cc-ccCC
Confidence 478999999999999999885553 68999999 8999999999987763 246666665544 11 2468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.. + ..++.+++.+.++|+||
T Consensus 110 fD~I~s~~-~---~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 110 FDVITSRA-L---ASLNVLLELTLNLLKVG 135 (181)
T ss_pred ccEEEehh-h---hCHHHHHHHHHHhcCCC
Confidence 99999854 2 45778889999999998
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=2.5e-11 Score=102.33 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+++ .+.+|+++|+ +.+++.+++++..++. .+.....+... .. ...+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~-----~~-~~~~f 95 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINA-----AA-LNEDY 95 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchh-----cc-ccCCC
Confidence 367999999999999999985 4689999999 9999999988876653 23333333322 11 13579
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
|+|+++.++++. .....+++.+.++|+|| |.++++.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPG------GYNLIVA 133 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCC------cEEEEEE
Confidence 999999988764 45788999999999998 5645543
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=3.9e-11 Score=108.73 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..++.++..++..|+++|. +.++...+......+ ...++.+...++.+ ++. ...
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----~~~~i~~~~~d~e~-----lp~-~~~ 189 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----NDQRAHLLPLGIEQ-----LPA-LKA 189 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----CCCCeEEEeCCHHH-----CCC-cCC
Confidence 458899999999999999998766678999999 777654433222111 02245665544433 232 568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
||+|++..++||..+...+++.+.+.|+|| |.+++
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG------G~lvl 224 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPG------GELVL 224 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCC------cEEEE
Confidence 999999999999999999999999999998 66654
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.36 E-value=3.4e-11 Score=107.54 Aligned_cols=100 Identities=24% Similarity=0.299 Sum_probs=78.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||+|..++.++. .+.+|+++|+ +.+++.+++++..++. ++.+...|.... . ..+.||
T Consensus 121 ~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~---~---~~~~fD 186 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSA---S---IQEEYD 186 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcc---c---ccCCcc
Confidence 55999999999999999985 4689999999 9999999999887653 344444443331 1 146899
Q ss_pred EEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|+++.++++. +....+++.+.++|+|| |.++++.
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg------G~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPG------GYNLIVC 223 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCC------cEEEEEE
Confidence 99999988764 46788999999999998 5655554
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=2e-11 Score=107.89 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=80.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+|.+|||||||.|.+++.+|+..+++|+++.+ ++-.+.+++.+...++ .+++.+...||.+ + ..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~-----~---~~ 126 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRD-----L---PG 126 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG-----------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccc-----c---CC
Confidence 3569999999999999999999888899999999 8899999999988775 5678887777655 1 34
Q ss_pred CccEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||.|++..++.|. ..++.+++.+.++|+|| |.+++-
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg------G~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG------GRLVLQ 165 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT------EEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC------cEEEEE
Confidence 89999999999986 57899999999999999 665543
No 34
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=5e-11 Score=102.58 Aligned_cols=140 Identities=22% Similarity=0.261 Sum_probs=94.3
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~ 155 (282)
.+..|++++..... .++.+|||+|||+|.+++.+++....+|+++|+ +.+++.+++|+..++.
T Consensus 21 ds~~l~~~l~~~~~-------------~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--- 84 (223)
T PRK14967 21 DTQLLADALAAEGL-------------GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--- 84 (223)
T ss_pred cHHHHHHHHHhccc-------------CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---
Confidence 45677777755331 246799999999999999998654359999999 9999999999987653
Q ss_pred cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC---------------------CHHHHHHHHHHHHhcCCC
Q 023457 156 LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH---------------------LFDPLLVTLRLFLNSGEP 214 (282)
Q Consensus 156 ~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~---------------------~~~~ll~~l~~ll~~g~~ 214 (282)
++.+...|+.. .+ ...+||+|+++.+.+... .+..+++.+.++|++|
T Consensus 85 ----~~~~~~~d~~~----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-- 152 (223)
T PRK14967 85 ----DVDVRRGDWAR----AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-- 152 (223)
T ss_pred ----eeEEEECchhh----hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC--
Confidence 34455544433 11 246899999986543221 1456788889999998
Q ss_pred CCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 215 EPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 215 ~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|.++++..... ....++..++ .+|.++.+.
T Consensus 153 ----G~l~~~~~~~~---~~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 153 ----GSLLLVQSELS---GVERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred ----cEEEEEEeccc---CHHHHHHHHHHCCCCeEEEE
Confidence 66555433322 2345555554 477776543
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=1.6e-11 Score=108.17 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||||..+..++...+ ++|+++|+ ++|++.++++....... ...++.+...+.. .++..++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~---~~~~i~~~~~d~~-----~lp~~~~ 144 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS---CYKNIEWIEGDAT-----DLPFDDC 144 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc---cCCCeEEEEcccc-----cCCCCCC
Confidence 477999999999999998886543 59999999 99999998765321100 1224555554433 3344457
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.++++..+...+++.+.++|+|| |.++++.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG------G~l~i~d 182 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPG------SRVSILD 182 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcC------cEEEEEE
Confidence 8999999999999999999999999999999 6666653
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.33 E-value=1.7e-11 Score=110.24 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=84.6
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-|.+......++.... ..++++|||||||+|..++.++..++..|+++|. +.++..++.......
T Consensus 103 e~~s~~~~~~~l~~l~-------------~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~- 168 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLS-------------PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD- 168 (314)
T ss_pred HHHHHHHHHHHHHhcC-------------CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-
Confidence 5766666555554322 3458899999999999998887665568999999 777765433221111
Q ss_pred ccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 153 LISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
...++.+..++..+ ++. ...||+|+++.++||..+...+++.+++.|+|| |.+++.
T Consensus 169 ----~~~~v~~~~~~ie~-----lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG------G~Lvle 224 (314)
T TIGR00452 169 ----NDKRAILEPLGIEQ-----LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK------GELVLE 224 (314)
T ss_pred ----cCCCeEEEECCHHH-----CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC------CEEEEE
Confidence 12244555444333 221 347999999999999999999999999999999 666653
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.32 E-value=4.7e-11 Score=103.00 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..+..++...+ .+|+++|+ +.+++.++.++..++. .++.+...|... ++...
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~-----~~~~~ 112 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME-----LPFDD 112 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc-----CCCCC
Confidence 3478999999999999999986643 69999999 9999999999876542 345555444332 22224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||+|+++.++.+.+....+++.+.++|+|| |.++++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g------G~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG------GKVVCLE 151 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcC------eEEEEEE
Confidence 68999999999988889999999999999998 5655443
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.32 E-value=3.9e-11 Score=105.77 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+..++...+.+|+++|+ +.+++.++++... ..++.+...|... .+....+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~-----~~~~~~~ 117 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILK-----KDFPENT 117 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCccc-----CCCCCCC
Confidence 357899999999999999887666789999999 9999999886543 2245555544432 2223568
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++.+++++.. +...+++.+.++|+|| |.+++.-
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG------G~lvi~d 156 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN------GILLITD 156 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC------cEEEEEE
Confidence 99999999887754 7889999999999999 5655543
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=7.9e-11 Score=106.84 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=90.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++.. +.+|+++|. +.+++.++++...+ ++.+...|.. +++...+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------~i~~i~gD~e-----~lp~~~~s 178 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIIEGDAE-----DLPFPTDY 178 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------CCeEEeccHH-----hCCCCCCc
Confidence 46799999999999998887654 469999999 99999998875421 2333333322 22323568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-------------cccHHHHHHHHhh-cCceE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-------------WKKDSVFFKKAKK-LFDVE 248 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-------------~~~~~~f~~~~~~-~f~ve 248 (282)
||+|+++.++++..+.+.+++.+.++|+|| |.++++...... .....++.+.+++ ||+..
T Consensus 179 FDvVIs~~~L~~~~d~~~~L~e~~rvLkPG------G~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIG------GKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred eeEEEEcChhhhCCCHHHHHHHHHHhcCCC------cEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 999999999998888999999999999999 676654322111 1123555555554 89766
Q ss_pred EEccc
Q 023457 249 TIHAD 253 (282)
Q Consensus 249 ~v~~~ 253 (282)
++...
T Consensus 253 ~i~~i 257 (340)
T PLN02490 253 KLKRI 257 (340)
T ss_pred EEEEc
Confidence 55543
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.31 E-value=4.9e-11 Score=102.40 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=82.3
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++|||||||+|..+..++...+ .+|+++|+ +.+++.+++++...+. ..++.+...|+... + ...+||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~-----~-~~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKD-----P-FPDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccC-----C-CCCCCC
Confidence 4799999999999999987663 79999999 9999999999887663 45677777665441 1 135799
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+|++..++++..+...+++.+.++|+|| |.+++.
T Consensus 70 ~I~~~~~l~~~~~~~~~l~~~~~~Lkpg------G~l~i~ 103 (224)
T smart00828 70 LVFGFEVIHHIKDKMDLFSNISRHLKDG------GHLVLA 103 (224)
T ss_pred EeehHHHHHhCCCHHHHHHHHHHHcCCC------CEEEEE
Confidence 9999999999999999999999999998 565554
No 41
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.6e-11 Score=97.94 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+..|++|+|||||||.+++.++..++..|+++|+ +++++.++.|+..+ .+++.+..-|..+ ..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~--------~~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSD--------FR 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhh--------cC
Confidence 35679999999999999999998666689999999 99999999999873 3456666544433 35
Q ss_pred CCccEEEEcCccCCC---CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh--hcCceEEE---cc
Q 023457 181 REFDVILASDVVYHD---HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK--KLFDVETI---HA 252 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~---~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~--~~f~ve~v---~~ 252 (282)
.++|.+|++.++-.. .+. .++....++. . ++...|+.. ...|..... .|+.+..+ ..
T Consensus 107 ~~~dtvimNPPFG~~~rhaDr-~Fl~~Ale~s----------~-vVYsiH~a~---~~~f~~~~~~~~G~~v~~~~~~~~ 171 (198)
T COG2263 107 GKFDTVIMNPPFGSQRRHADR-PFLLKALEIS----------D-VVYSIHKAG---SRDFVEKFAADLGGTVTHIERARF 171 (198)
T ss_pred CccceEEECCCCccccccCCH-HHHHHHHHhh----------h-eEEEeeccc---cHHHHHHHHHhcCCeEEEEEEEEE
Confidence 789999999887532 222 2333332222 2 333334333 455555443 36655433 11
Q ss_pred c-------CCCCCcccceEEEEEeee
Q 023457 253 D-------LPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 253 ~-------~~~~~~~~~~~v~~~~~~ 271 (282)
. +..+..+.++.+|++.|.
T Consensus 172 ~iP~~y~fH~k~~~~I~v~i~r~~k~ 197 (198)
T COG2263 172 PIPRTYPFHRKRVRRIEVDIFRFEKG 197 (198)
T ss_pred ecCccCchhhheeeeeeEEEEEEEec
Confidence 1 122444567788888774
No 42
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.28 E-value=2.4e-10 Score=96.52 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|.+++.+++..+ .+|+++|. +.+++.+++|+..++. ..++.+...+..+ .+....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~----~l~~~~ 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPE----ILFTIN 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhh----hHhhcC
Confidence 4578999999999999999986543 68999999 9999999999988763 2345555444322 122223
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
..||.|++.. ....+..+++.+.++|+|| |.+++... ...........++ .+|.++.+.
T Consensus 110 ~~~D~V~~~~---~~~~~~~~l~~~~~~Lkpg------G~lv~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 110 EKFDRIFIGG---GSEKLKEIISASWEIIKKG------GRIVIDAI---LLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCCCEEEECC---CcccHHHHHHHHHHHcCCC------cEEEEEee---cHHHHHHHHHHHHHcCCCeEEEE
Confidence 6799999853 2346788999999999998 56554332 3334455555553 478766544
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.28 E-value=2.4e-10 Score=98.56 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||+|||+|..+..++..++ .+|+++|+ +.+++.+++++..++. ..++.+...++.+. .....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~-----~~~~~ 120 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEAL-----PFPDN 120 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccC-----CCCCC
Confidence 467999999999999999987775 89999999 9999999998865432 23456665555441 12246
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++.++++......+++.+.++|+++
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCC
Confidence 8999999999999899999999999999998
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=1.8e-10 Score=109.78 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..++.++...+.+|+++|+ +.+++.+++|.... ..++.+...|+... +....+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~-----~~~~~~ 332 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKK-----TYPDNS 332 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccC-----CCCCCC
Confidence 357799999999999999998766789999999 89999998876522 23566666665541 222467
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++..+++|..+...+++.+.++|+||
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=8.6e-11 Score=104.03 Aligned_cols=104 Identities=22% Similarity=0.256 Sum_probs=81.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..++.+++..+ .+|+++|+ +.+++.+++|...++. .++.+...++.. ++...
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~-----l~~~~ 144 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEA-----LPVAD 144 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhh-----CCCCC
Confidence 3588999999999999888776554 47999999 9999999999887653 245555444432 22234
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG------G~l~i~ 182 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPG------GRFAIS 182 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC------cEEEEE
Confidence 68999999999988888999999999999998 665553
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=6.1e-10 Score=86.07 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..++.+++..+ .+|+++|+ +.+++.+++|+..++. .++.+...+... .......+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~ 88 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPE----ALEDSLPE 88 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccc----cChhhcCC
Confidence 467999999999999999987654 69999999 9999999999987653 234444433221 01112358
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.... .....+++.+.++|+++
T Consensus 89 ~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 89 PDRVFIGGSG---GLLQEILEAIWRRLRPG 115 (124)
T ss_pred CCEEEECCcc---hhHHHHHHHHHHHcCCC
Confidence 9999986543 35678999999999998
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.22 E-value=2.3e-10 Score=100.45 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++.. ++.+...|... +. ...
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~-----~~-~~~ 92 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIAS-----WQ-PPQ 92 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhc-----cC-CCC
Confidence 357899999999999999998665 479999999 999999887532 23333323222 11 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg------G~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPG------GVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCC------cEEEEE
Confidence 8999999999999889999999999999998 565554
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=1.4e-10 Score=101.44 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|.++..++. .+.+|+++|+ +.+++.++.+... ..+...|+. .++.....|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~-----~~~~~~~~f 104 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIE-----SLPLATATF 104 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcc-----cCcCCCCcE
Confidence 467899999999999988874 4689999999 9999988875421 122222222 222335689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++..+...++..+.++|+||
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence 99999999998889999999999999998
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.22 E-value=3.9e-12 Score=95.16 Aligned_cols=94 Identities=26% Similarity=0.356 Sum_probs=59.5
Q ss_pred EEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEE
Q 023457 110 LELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVIL 187 (282)
Q Consensus 110 LELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii 187 (282)
||||||+|..+..++... ..+|+++|+ +.+++.+++++..... .....+.+...+..... ...+||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------DNFERLRFDVLDLFDYD-PPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------EEEEE--SSS---CC-C----SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------cceeEEEeecCChhhcc-cccccceeh
Confidence 799999999999988664 479999999 8999888777766441 12223333331111110 124899999
Q ss_pred EcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 188 ASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 188 ~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++.++++.++...+++.+.++|+||
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT-TSS
T ss_pred hhhhHhhhhhHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998
No 50
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=102.40 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||||||+|.++..++... +.+|+++|+ +.|++.++++ .+.+...|.. .+. ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~-----~~~-~~~ 88 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVR-----DWK-PKP 88 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh-----hCC-CCC
Confidence 357899999999999999998664 479999999 9999888652 1233333322 221 246
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+||+|+++.++++..+...+++.+.++|+|| |.+++.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg------G~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG------SWIAVQ 125 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCC------cEEEEE
Confidence 8999999999999999999999999999999 666554
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.20 E-value=6.2e-10 Score=96.19 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..+..+++ .+.+|+++|. +.++..++.++..++. .+.+...++.+. ......+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~ 114 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL-------KIDYRQTTAEEL----AAEHPGQ 114 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEecCHHHh----hhhcCCC
Confidence 4588999999999999998875 4688999999 8999999988876542 334444333321 1112468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++......+++.+.++|+++
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998
No 52
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.20 E-value=7.8e-11 Score=90.55 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=79.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
|.+|||+|||+|...+.+++.+..+++++|+ +.+++.++.|+..++. ..++.+..-|+... . ......+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~--~-~~~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDL--P-EPLPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHH--H-HTCTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhc--h-hhccCceeE
Confidence 4589999999999999998665589999999 9999999999998764 45677777655431 1 012357899
Q ss_pred EEEEcCccCCC--------CCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 185 VILASDVVYHD--------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 185 ~Ii~sd~ly~~--------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|+++.+.... .....+++.+.++|+++ |.++++.
T Consensus 73 ~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g------G~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG------GVLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE------EEEEEEE
T ss_pred EEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC------eEEEEEe
Confidence 99998777642 13578899999999998 6666554
No 53
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.18 E-value=2.2e-10 Score=92.58 Aligned_cols=97 Identities=28% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++++|||||||+|..+..++ ..+.+|+++|+ +.+++. .+ +.....+ ..........
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~g~D~~~~~~~~------~~----------~~~~~~~-----~~~~~~~~~~ 78 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA-KRGFEVTGVDISPQMIEK------RN----------VVFDNFD-----AQDPPFPDGS 78 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH-HTTSEEEEEESSHHHHHH------TT----------SEEEEEE-----CHTHHCHSSS
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHHhh------hh----------hhhhhhh-----hhhhhccccc
Confidence 457899999999999999886 45679999999 888777 11 1111111 1112223679
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR 229 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~ 229 (282)
||+|++++++++..+...+++.+.++|+|| +.+++....+
T Consensus 79 fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg-------G~l~~~~~~~ 118 (161)
T PF13489_consen 79 FDLIICNDVLEHLPDPEEFLKELSRLLKPG-------GYLVISDPNR 118 (161)
T ss_dssp EEEEEEESSGGGSSHHHHHHHHHHHCEEEE-------EEEEEEEEBT
T ss_pred hhhHhhHHHHhhcccHHHHHHHHHHhcCCC-------CEEEEEEcCC
Confidence 999999999999999999999999999998 4455555444
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.18 E-value=3.5e-10 Score=93.75 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
-.++||+|||.|.++..+|.++ .+++++|+ +.+++.+++.+.. ..+|.+...+..+. .+.++||
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~------~P~~~FD 108 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEF------WPEGRFD 108 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---------SS-EE
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCC------CCCCCee
Confidence 4589999999999999998554 79999999 9999999987764 34677777655441 2367999
Q ss_pred EEEEcCccCCCCC---HHHHHHHHHHHHhcCCCCCCCceEEEEEEee----cCcc---cHHHHHHHHhhcC-ceEEEccc
Q 023457 185 VILASDVVYHDHL---FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL----RRWK---KDSVFFKKAKKLF-DVETIHAD 253 (282)
Q Consensus 185 ~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~----~~~~---~~~~f~~~~~~~f-~ve~v~~~ 253 (282)
+|+.+.++|+... +..++..+...|+|| |. ++++... ++|+ ..+...+.+.+.| +|+++.-.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pg------G~-LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~ 181 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPG------GH-LVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECR 181 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEE------EE-EEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCC------CE-EEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEc
Confidence 9999999998765 456778888889998 44 4444321 1222 2345555555544 67766644
No 55
>PRK04266 fibrillarin; Provisional
Probab=99.17 E-value=1.7e-09 Score=93.05 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.+|||+|||+|..++.++...+ .+|+++|. +.|++.+.+++... .++.....|... +........
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~~--~~~~~~l~~ 140 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADARK--PERYAHVVE 140 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCCC--cchhhhccc
Confidence 4578999999999999999986653 68999999 99999887776532 133333322221 100111235
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc----cH---HHHHHHHh-hcCceEEEccc
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK----KD---SVFFKKAK-KLFDVETIHAD 253 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~----~~---~~f~~~~~-~~f~ve~v~~~ 253 (282)
.||+|++.-. .+.....+++.+.++|+|| |.+++... .+..+ .. ....+.++ .||++.....-
T Consensus 141 ~~D~i~~d~~--~p~~~~~~L~~~~r~LKpG------G~lvI~v~-~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 141 KVDVIYQDVA--QPNQAEIAIDNAEFFLKDG------GYLLLAIK-ARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred cCCEEEECCC--ChhHHHHHHHHHHHhcCCC------cEEEEEEe-cccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 6999996311 1222345689999999999 67666432 12211 11 12233333 48988776654
Q ss_pred CCC
Q 023457 254 LPC 256 (282)
Q Consensus 254 ~~~ 256 (282)
.+.
T Consensus 212 ~p~ 214 (226)
T PRK04266 212 EPY 214 (226)
T ss_pred CCC
Confidence 333
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.15 E-value=1.1e-09 Score=91.62 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.+++..+ .+|+++|. +.+++.+++|+..++. .++.+...+... .....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-------~~~~~ 97 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-------ELPGK 97 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-------hcCcC
Confidence 477999999999999999987654 69999999 9999999999987763 234444422211 11357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCc
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFD 246 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ 246 (282)
||+|+++... ..+..+++.+.++|++| |.+++.... ......+...++ .+|.
T Consensus 98 ~D~v~~~~~~---~~~~~~l~~~~~~Lk~g------G~lv~~~~~---~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 98 ADAIFIGGSG---GNLTAIIDWSLAHLHPG------GRLVLTFIL---LENLHSALAHLEKCGVS 150 (187)
T ss_pred CCEEEECCCc---cCHHHHHHHHHHhcCCC------eEEEEEEec---HhhHHHHHHHHHHCCCC
Confidence 9999987543 35678899999999998 554442211 223445555554 3663
No 57
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=1e-09 Score=94.49 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=80.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+|||+|..+..++... .++|+++|+ +.+++.++++.... ..++.+...+... .+...
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~-----~~~~~ 85 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADG-----LPFPD 85 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEeccccc-----CCCCC
Confidence 457899999999999999998665 369999999 89999998873321 2345555544433 12224
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
..||+|++..++.+..+...+++.+.++|+|| |.+++..
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPG------GRVVVLD 124 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCC------cEEEEEe
Confidence 68999999999999899999999999999998 5655543
No 58
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.15 E-value=4.1e-10 Score=94.04 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.++||||||.|..++.+| ..|-.|+++|. +..++.+++.+...++ .+.....|..... ....
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~~~~------~~~~ 94 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLNDFD------FPEE 94 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-------TTT
T ss_pred cCCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecchhcc------ccCC
Confidence 357799999999999999998 56799999999 8899998887776553 4666666665521 1467
Q ss_pred ccEEEEcCccC--CCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
||+|++.-+++ +.+..+.+++.+...++||
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 99999876655 4667889999999999998
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=5.1e-10 Score=94.89 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=85.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~ 180 (282)
.+.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++++..++. .++.+...++. ..+. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~----~~l~~~~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAV----EVLLDMFPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHH----HHHHHHcCc
Confidence 577999999999999999986654 68999999 9999999999987652 34666655441 1222 224
Q ss_pred CCccEEEEcCccCCCC--------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceE
Q 023457 181 REFDVILASDVVYHDH--------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVE 248 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve 248 (282)
..||+|+++.+..+.. ....+++.+.++|+|+ |.+++.. . ........++.++ .+|.++
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg------G~l~i~~-~--~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG------GEIHFAT-D--WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC------CEEEEEc-C--CHHHHHHHHHHHHhCccccc
Confidence 6799999864332111 2578999999999998 5554433 2 2222344555554 466655
No 60
>PRK05785 hypothetical protein; Provisional
Probab=99.15 E-value=5.4e-10 Score=96.34 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+.+|||||||||..+..++...+.+|+++|+ ++|++.++.+. .....+ ...++..+++||
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d-----~~~lp~~d~sfD 112 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGS-----FEALPFRDKSFD 112 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEec-----hhhCCCCCCCEE
Confidence 6699999999999999998654679999999 99999887531 011212 223344467899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|+++.++++..+.+.+++.+.++|+|.
T Consensus 113 ~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 113 VVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999985
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.14 E-value=4.1e-10 Score=99.18 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.+|++|||||||.|..+..++.++++.|+++|. ...+-..+ +...-. .....+..+..+ .++++. .+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~--~i~~~l-----g~~~~~~~lplg---vE~Lp~-~~ 181 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFE--AIKHFL-----GQDPPVFELPLG---VEDLPN-LG 181 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHH--HHHHHh-----CCCccEEEcCcc---hhhccc-cC
Confidence 5679999999999999999998887789999998 54322211 111110 011122222111 223444 57
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|++..|+||..+.-..+..++..|++|
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 8999999999999999999999999999998
No 62
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.14 E-value=4.2e-09 Score=88.75 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++... +.+|+++|+ +.+++.+++|+..++. .++.+...+..+ .+......
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~----~~~~~~~~ 109 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPE----CLAQLAPA 109 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHH----HHhhCCCC
Confidence 47799999999999999987554 379999999 9999999999987763 245555433221 11112234
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+|.|+... ...+..+++.+.++|+|| |.+++..
T Consensus 110 ~d~v~~~~----~~~~~~~l~~~~~~Lkpg------G~li~~~ 142 (196)
T PRK07402 110 PDRVCIEG----GRPIKEILQAVWQYLKPG------GRLVATA 142 (196)
T ss_pred CCEEEEEC----CcCHHHHHHHHHHhcCCC------eEEEEEe
Confidence 67765521 245688999999999998 5655544
No 63
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.13 E-value=1.6e-09 Score=89.02 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=90.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
..+|.+++|+|||||.+++.+|..++ .+|+++|. +++++.+++|++..+. +++.+..-+- +..+.. .
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~g~A----p~~L~~-~ 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVEGDA----PEALPD-L 100 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEeccc----hHhhcC-C
Confidence 45688999999999999999984444 69999999 9999999999998773 4566655221 222222 2
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcC-ceEEEc
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLF-DVETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f-~ve~v~ 251 (282)
.+||.|+.... ..++.+++++...|++| |++++-+... +.....++.++ .+| ++.++.
T Consensus 101 ~~~daiFIGGg----~~i~~ile~~~~~l~~g------grlV~naitl---E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 101 PSPDAIFIGGG----GNIEEILEAAWERLKPG------GRLVANAITL---ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CCCCEEEECCC----CCHHHHHHHHHHHcCcC------CeEEEEeecH---HHHHHHHHHHHHcCCceEEEEE
Confidence 37999998755 57889999999999999 7877766543 34444455444 366 555443
No 64
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.12 E-value=6.1e-10 Score=93.97 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|.+++.++...+++|+++|. +.+++.+++|++.++. .++.+..-|+.. .+......|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~----~l~~~~~~f 122 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALS----FLAQPGTPH 122 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHH----HHhhcCCCc
Confidence 36799999999999999765566689999999 9999999999998873 246666655433 121123469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHH--HhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLF--LNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~l--l~~g 212 (282)
|+|++..+ |.....+.+++.|... +.++
T Consensus 123 DlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~ 152 (199)
T PRK10909 123 NVVFVDPP-FRKGLLEETINLLEDNGWLADE 152 (199)
T ss_pred eEEEECCC-CCCChHHHHHHHHHHCCCcCCC
Confidence 99999766 6666677777777653 5555
No 65
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=1.6e-09 Score=107.70 Aligned_cols=131 Identities=19% Similarity=0.138 Sum_probs=91.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++|||||||||..++.++..++.+|+++|+ +.+++.+++|+..|+.. ..++.+...|..+ .+.....+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~----~l~~~~~~f 609 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLA----WLKEAREQF 609 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHH----HHHHcCCCc
Confidence 47899999999999999998654568999999 99999999999999852 1356666655433 111124689
Q ss_pred cEEEEcCccCCC-----------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEc
Q 023457 184 DVILASDVVYHD-----------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~-----------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~ 251 (282)
|+||+..+-+.. ..+..++..+.++|++| |. ++++......... ...+ +.+|.++.+.
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g------G~-l~~~~~~~~~~~~---~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG------GT-LYFSNNKRGFKMD---EEGLAKLGLKAEEIT 679 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC------CE-EEEEeCCccCChh---HHHHHhCCCeEEEEe
Confidence 999997654421 23567888889999998 44 4444433433322 2333 3588888877
Q ss_pred cc
Q 023457 252 AD 253 (282)
Q Consensus 252 ~~ 253 (282)
..
T Consensus 680 ~~ 681 (702)
T PRK11783 680 AK 681 (702)
T ss_pred cC
Confidence 54
No 66
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.12 E-value=4.7e-10 Score=98.04 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||+|..++.++.. .+.+|+++|+ +.|++.+++++..++. ..++.+...++.+ ++ .
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~-----~~--~ 123 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD-----IA--I 123 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhh-----CC--C
Confidence 4679999999999999888753 2479999999 9999999999987653 3356666544333 21 2
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
..+|+|+++.++++.. ....+++.+.+.|+||
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 4589999988887653 3568999999999998
No 67
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=5.4e-09 Score=92.88 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=70.1
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
+|||||||+|.+++.+|...+ +.|+++|+ +.+++.+++|+..|++ .++.+...+|-.. ..++||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~-------~~~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEP-------LRGKFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeecccc-------cCCceeE
Confidence 899999999999999997776 59999999 9999999999999984 2344444466551 2348999
Q ss_pred EEEcCccCCCC-------------------------CHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDH-------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g 212 (282)
|++|.+.=..+ .+..++..+.+.++++
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~ 231 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG 231 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC
Confidence 99985532211 2556777777888886
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.11 E-value=1.6e-10 Score=86.75 Aligned_cols=92 Identities=26% Similarity=0.424 Sum_probs=68.9
Q ss_pred EEEeCCCCCHHHHHHHHHh--C--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 109 ILELGSGTGLVGMAAAAIL--G--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~--~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
|||||||+|.....++... + .+++++|+ +++++.++++....+. ++++...|+.+ ++...++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------~~~~~~~D~~~-----l~~~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------KVRFVQADARD-----LPFSDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------TSEEEESCTTC-----HHHHSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------ceEEEECCHhH-----CcccCCCe
Confidence 7999999999999998664 2 79999999 9999999998876432 45555555433 45557799
Q ss_pred cEEEEcCc-cCC--CCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDV-VYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~-ly~--~~~~~~ll~~l~~ll~~g 212 (282)
|+|+++.. +++ .+....+++.+.++++||
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999544 554 346789999999999987
No 69
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.10 E-value=1e-09 Score=94.50 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+++|||||||+|..+..++..+. .+|+++|+ +.++..++.+.. .++.+...|..+ .+....+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~-----~~~~~~~ 98 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEK-----LPLEDSS 98 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhh-----CCCCCCc
Confidence 357999999999999999986654 57999999 888888776443 133444444333 2223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.++++..+...++..+.++|++|
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence 999999999999989999999999999998
No 70
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=6.8e-09 Score=96.04 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||||||+|.+++.++... +.+|+++|+ +.+++.+++|+..++. ++.+...||.+.. .+ ...+|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-------rV~fi~gDl~e~~---l~-~~~~F 320 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-------RVEFAHGSWFDTD---MP-SEGKW 320 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------cEEEEEcchhccc---cc-cCCCc
Confidence 5589999999999999988654 479999999 9999999999987652 5677777765421 11 13479
Q ss_pred cEEEEcCccCCCC-------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHH
Q 023457 184 DVILASDVVYHDH-------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFF 238 (282)
Q Consensus 184 D~Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~ 238 (282)
|+|+++.+..... .+..+++.+.+.|+|+ |.+++.... .......
T Consensus 321 DLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg------G~lilEiG~----~Q~e~V~ 390 (423)
T PRK14966 321 DIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG------GFLLLEHGF----DQGAAVR 390 (423)
T ss_pred cEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC------cEEEEEECc----cHHHHHH
Confidence 9999987632111 1446777777889988 554443322 2223344
Q ss_pred HHHh-hcCceEEEccc
Q 023457 239 KKAK-KLFDVETIHAD 253 (282)
Q Consensus 239 ~~~~-~~f~ve~v~~~ 253 (282)
+.+. .+|....+..+
T Consensus 391 ~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 391 GVLAENGFSGVETLPD 406 (423)
T ss_pred HHHHHCCCcEEEEEEc
Confidence 4443 47765444433
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=2.7e-09 Score=90.66 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..+..++...+ ++|+++|+ +.+++.+++|+..++. ..++.+...|..+. ++ ...
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~----~~-~~~ 141 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRG----LE-KHA 141 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccC----Cc-cCC
Confidence 477999999999999988886653 69999999 9999999999988763 23456665444331 11 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|++...+.+ +.+.+.+.|++|
T Consensus 142 ~fD~Ii~~~~~~~------~~~~l~~~L~~g 166 (205)
T PRK13944 142 PFDAIIVTAAAST------IPSALVRQLKDG 166 (205)
T ss_pred CccEEEEccCcch------hhHHHHHhcCcC
Confidence 8999999866543 235677889998
No 72
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.09 E-value=1.4e-09 Score=100.85 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.+++.+++..+.+|+++|+ +.+++.+++++.. . .+.+...++.. + .++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-------~v~~~~~D~~~-----l---~~~ 228 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-------PVEIRLQDYRD-----L---NGQ 228 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-------eEEEEECchhh-----c---CCC
Confidence 357899999999999999998777789999999 9999999987742 1 24444434332 1 367
Q ss_pred ccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|++..++++.. .++.+++.+.++|+||
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999988753 4678999999999998
No 73
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=4.7e-09 Score=91.89 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|.+++.++...+ .+|+++|+ +.+++.+++|+..|+. .+...|+.+..... ...+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~---------~~~~~D~~~~l~~~---~~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG---------TVHEGDLYDALPTA---LRGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------EEEEeechhhcchh---cCCCE
Confidence 45899999999999999986553 59999999 9999999999987652 34455554311111 13579
Q ss_pred cEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 184 DVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 184 D~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
|+|+++.+..... .+..+++.+.++|+++ |.+++.... . .....
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g------G~l~l~~~~-~---~~~~v 224 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG------GHLLVETSE-R---QAPLA 224 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC------CEEEEEECc-c---hHHHH
Confidence 9999986643211 1347778888999998 565554322 2 23345
Q ss_pred HHHHh-hcCceEEEc
Q 023457 238 FKKAK-KLFDVETIH 251 (282)
Q Consensus 238 ~~~~~-~~f~ve~v~ 251 (282)
...+. .+|....+.
T Consensus 225 ~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 225 VEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHCCCCceeeE
Confidence 55444 478777665
No 74
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.09 E-value=9.8e-10 Score=93.27 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|..+..++... +.+|+++|+ +.+++.++++.. .+.+...+..+ +....+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~------~~~~~s 105 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD------PFKDNF 105 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC------CCCCCC
Confidence 46789999999999999987653 579999999 999999987532 12333333222 223568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|+++.+++|.. .+.+.+.+.++.+-.
T Consensus 106 fD~V~~~~vL~hl~-p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 106 FDLVLTKGVLIHIN-PDNLPTAYRELYRCS 134 (204)
T ss_pred EEEEEECChhhhCC-HHHHHHHHHHHHhhc
Confidence 99999999998764 333444444444433
No 75
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=7.4e-10 Score=91.81 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=83.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~~fD 184 (282)
..|||+|||||..--..-...+.+|+++|. +.|.+.+.+.+..|.. ..+. ..-... .++++. .+.++|
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~--~fvva~--ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------LQVE--RFVVAD--GENLPQLADGSYD 147 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------cceE--EEEeec--hhcCcccccCCee
Confidence 368999999999876654334579999999 9999999999888742 2332 112222 223331 367999
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC-cccHHHHHHH
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR-WKKDSVFFKK 240 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~-~~~~~~f~~~ 240 (282)
+|++.-++...++....+..+.++|+|| |++++ .-|.+. +.....++..
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpg------G~iif-iEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPG------GRIIF-IEHVAGEYGFWNRILQQ 197 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCC------cEEEE-EecccccchHHHHHHHH
Confidence 9999999999999999999999999999 56555 445443 3333444443
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.07 E-value=1.4e-09 Score=94.46 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++.+|||||||+|..+..+++.. +.+|+++|+ +.|++.+++++...+. ..++.+...|+.+ ++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~-----~~--~ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRH-----VE--I 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh-----CC--C
Confidence 46799999999999999888653 478999999 9999999998875432 2356666655543 11 2
Q ss_pred CCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
..+|+|+++.++++.. ....+++.+.+.|+||
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3589999988887653 4578999999999998
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.06 E-value=1.7e-08 Score=89.28 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=91.7
Q ss_pred Cccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~ 144 (282)
++-+++|+- ---||.-|..-.... ...++.+|||||||+|..+..++...+ ..|+++|+ +.+++.+.
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~l---------~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl 174 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVANI---------PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCccee---------ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence 445799982 234444442322211 345688999999999999999997764 68999999 77665544
Q ss_pred HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 145 FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..+.. ..++....-|... +..+......||+|++.- . .+.+...++.++.++|+++ |.+++
T Consensus 175 ~~ak~--------r~NI~~I~~Da~~--p~~y~~~~~~vDvV~~Dv-a-~pdq~~il~~na~r~LKpG------G~~vI- 235 (293)
T PTZ00146 175 NMAKK--------RPNIVPIIEDARY--PQKYRMLVPMVDVIFADV-A-QPDQARIVALNAQYFLKNG------GHFII- 235 (293)
T ss_pred HHhhh--------cCCCEEEECCccC--hhhhhcccCCCCEEEEeC-C-CcchHHHHHHHHHHhccCC------CEEEE-
Confidence 43322 1123333323222 111222235799998854 2 3455667778899999998 66655
Q ss_pred EEeecCcc----cHHHHH---HHHh-hcCceEEEcccCCC
Q 023457 225 MAHLRRWK----KDSVFF---KKAK-KLFDVETIHADLPC 256 (282)
Q Consensus 225 ~~~~~~~~----~~~~f~---~~~~-~~f~ve~v~~~~~~ 256 (282)
....+... ....|- +.++ .+|++.++..-.+.
T Consensus 236 ~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 236 SIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred EEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 32222221 123332 2333 37987655433333
No 78
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.2e-08 Score=96.50 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=84.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++. ..++.+|||+|||+|..++.++... .++|+++|+ +.+++.+++|+..
T Consensus 234 ~qd~~s~lv~~~l~----------------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 234 IQDESSMLVAPALD----------------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred EEChHHHHHHHHhC----------------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44556777776662 2347799999999999999998765 479999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC----------------------CHHHHHHHHHH
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH----------------------LFDPLLVTLRL 207 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~----------------------~~~~ll~~l~~ 207 (282)
++. ..+.+...|+... .......||+|++....+... ....++..+.+
T Consensus 298 ~g~------~~v~~~~~D~~~~----~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 367 (444)
T PRK14902 298 LGL------TNIETKALDARKV----HEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQ 367 (444)
T ss_pred cCC------CeEEEEeCCcccc----cchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 774 2366665554431 011125799999854322110 12457888899
Q ss_pred HHhcCCCCCCCceEEEEEE
Q 023457 208 FLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~ 226 (282)
+|+|| |.+++..+
T Consensus 368 ~LkpG------G~lvystc 380 (444)
T PRK14902 368 YLKKG------GILVYSTC 380 (444)
T ss_pred HcCCC------CEEEEEcC
Confidence 99998 67665433
No 79
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.2e-08 Score=96.14 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=105.6
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..-.++..++.++ ...+|.+|||+|||+|..++.++...+ ++|+++|+ +.+++.+++|+..
T Consensus 236 ~qd~~s~l~~~~l----------------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 236 VQDRSAQLVAPLL----------------DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred EECHHHHHHHHHh----------------CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3455666666655 223578999999999999999986643 68999999 9999999999998
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcC------ccCCCCC----------------HHHHHHHHHH
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASD------VVYHDHL----------------FDPLLVTLRL 207 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd------~ly~~~~----------------~~~ll~~l~~ 207 (282)
++. .++.+...|..... .........||.|++.. ++...++ ...++..+.+
T Consensus 300 ~g~------~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 300 LGL------KSIKILAADSRNLL-ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred cCC------CeEEEEeCChhhcc-cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 874 23555554433210 00001235799999732 2222221 3578889999
Q ss_pred HHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh--cCceEEEcc-cCCCCCcccceEEEEEeee
Q 023457 208 FLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK--LFDVETIHA-DLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~--~f~ve~v~~-~~~~~~~~~~~~v~~~~~~ 271 (282)
+++|| |.+++..+.....+........+++ .|+++.... ..|....-.|+.+-+++|+
T Consensus 373 ~lkpg------G~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 373 LLKPG------GTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred hcCCC------CEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 99998 6777665554333333333333333 565543221 2344334567777777664
No 80
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=6.4e-09 Score=93.76 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.+++.++. .+.+|+++|+ +.|++.++++........ .....+.+...|+.. ....|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~--------l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLES--------LSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhh--------cCCCc
Confidence 478999999999999999985 4689999999 999999999887542100 001234444433322 24689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHH
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLF 208 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~l 208 (282)
|+|++.++++|... ...+++.+.++
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 99999999876543 33455655543
No 81
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=6.5e-09 Score=90.55 Aligned_cols=95 Identities=25% Similarity=0.414 Sum_probs=71.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|..++.++...+ .+|+++|+ +.+++.++.|+..++. .++.+...++... + ...+|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~----~--~~~~f 155 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP----L--PGGKF 155 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc----C--cCCce
Confidence 56899999999999999986653 69999999 9999999999988763 2466666555431 1 14689
Q ss_pred cEEEEcCccCCCCC--------------------------HHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHL--------------------------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--------------------------~~~ll~~l~~ll~~g 212 (282)
|+|+++.+...... +..+++.+.++|++|
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 99999766442111 246788888999998
No 82
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=2.3e-09 Score=95.59 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|..++.++... ..+|+++|+ +.+++.+++|+..|+. ..++.+...|+.+ .+ ...+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~----~~--~~~~f 190 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFA----AL--PGRKY 190 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhh----cc--CCCCc
Confidence 5689999999999999998665 369999999 9999999999998874 3467777766543 11 13479
Q ss_pred cEEEEcCccCCCC-------------------------CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH-------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~-------------------------~~~~ll~~l~~ll~~g 212 (282)
|+|+++.+..... .+..+++.+.++|++|
T Consensus 191 D~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 191 DLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred cEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 9999975532111 1356788888999998
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.05 E-value=6.1e-09 Score=89.06 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++...+ .+|+++|+ +.+++.+++|+..++. .++.+...|.... . ...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~----~-~~~ 144 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQG----W-EPL 144 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccC----C-ccc
Confidence 3578999999999999999986654 36999999 9999999999988763 3456555444331 1 113
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.+||+|++..... .+...+.+.|++| |.+++.
T Consensus 145 ~~fD~Ii~~~~~~------~~~~~~~~~L~~g------G~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGP------KIPEALIDQLKEG------GILVMP 176 (215)
T ss_pred CCCCEEEEcCCcc------cccHHHHHhcCcC------cEEEEE
Confidence 5799999875442 2345677889998 665554
No 84
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.05 E-value=3e-09 Score=98.86 Aligned_cols=134 Identities=18% Similarity=0.083 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++++|||+|||||..++.++...+.+|+++|. +.+++.+++|+..|+.. ..++.+...|..+.. ..+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l-~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLL-RTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHH-HHHHhcCCCC
Confidence 47899999999999999877544469999999 99999999999999852 135666655443310 0111124579
Q ss_pred cEEEEcCccCCCC---------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcCceEE
Q 023457 184 DVILASDVVYHDH---------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~~---------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f~ve~ 249 (282)
|+||+..+.+... .+..++....++|++| +.++++.. ...-....|.+.+. .+-.++.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g-------G~lv~~sc-s~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG-------GILLTFSC-SGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC-------eEEEEEeC-CCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999876655332 3556666778899988 44444432 22223455555443 2345555
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 367 l~ 368 (396)
T PRK15128 367 IE 368 (396)
T ss_pred EE
Confidence 54
No 85
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.5e-08 Score=93.89 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+|||+|||+|..++.++...+ .+|+++|. +.++..+++|+..++. .+.+...|..+ .... ....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~--~~~~-~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD--PAQW-WDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc--chhh-cccC
Confidence 3578999999999999999987654 69999999 9999999999998764 23444433322 1000 1135
Q ss_pred CccEEEEcCccCCC------C----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHH
Q 023457 182 EFDVILASDVVYHD------H----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVF 237 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~------~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f 237 (282)
+||.|++..+.... + ....++..+.++|+|| |.+++..+..-..+.....
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG------G~lvystcs~~~~Ene~~v 384 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG------GTLLYATCSILPEENEQQI 384 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC------CEEEEEeCCCChhhCHHHH
Confidence 79999964432210 0 1246888999999999 6776665544333333333
No 86
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.04 E-value=1e-08 Score=87.45 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||+|||+|..+..++...+ .+++++|+ +.+++.++++... ..++.+...+..+ .+...+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~-----~~~~~~ 105 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEA-----LPFEDN 105 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhc-----CCCCCC
Confidence 578999999999999999987776 49999999 8999999887651 2245555544433 112245
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
+||+|+++.++++......+++.+.++|+|| |.++++.
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~g------G~l~~~~ 143 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPG------GRLVILE 143 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCC------cEEEEEE
Confidence 7999999999988889999999999999998 5655543
No 87
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=1.8e-08 Score=85.91 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc-cch--hh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA-NDV--AV 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~-~~~--~~ 178 (282)
.++.+|||||||||..+..+++..+ .+|+++|+..+ +. ...+.+.+.|+.+... ..+ ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------~~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------IVGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------CCCcEEEecCCCChHHHHHHHHHh
Confidence 3577999999999999999987654 58999999332 11 1235666666655210 000 11
Q ss_pred cCCCccEEEEcCccCCCCC-----------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCce
Q 023457 179 VGREFDVILASDVVYHDHL-----------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~-----------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~v 247 (282)
....||+|+++.+.+.... ...+++.+.++|+|| |.+++... +......|+..+...|.-
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG------G~~vi~~~---~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG------GSFVVKVF---QGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC------CEEEEEEe---cCcCHHHHHHHHHhCceE
Confidence 2468999999765543321 256889999999998 56555332 223567788888777755
Q ss_pred EEEc
Q 023457 248 ETIH 251 (282)
Q Consensus 248 e~v~ 251 (282)
-.+.
T Consensus 185 v~~~ 188 (209)
T PRK11188 185 VKVR 188 (209)
T ss_pred EEEE
Confidence 5444
No 88
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.03 E-value=2.6e-09 Score=91.48 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++. .+.+|+++|+ +.++..+++++..+.. ..++.+...++.. . ..+|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~-----~---~~~f 120 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLS-----L---CGEF 120 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhh-----C---CCCc
Confidence 478999999999999999974 4679999999 9999999998876542 2345555544433 1 2679
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
|+|++++++++.. ....+++.+.++++++
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999987643 4566777777776543
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=5.8e-09 Score=89.09 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||||||+|..+..++...+ ++|+++|+ +++++.+++|+..++. .++.+...|.... . ...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~----~-~~~ 143 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLG----Y-EEN 143 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccC----C-CcC
Confidence 3578999999999999998886654 69999999 9999999999987663 3455555432221 1 124
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.+||+|++...+. .+...+.+.|++| |.+++.
T Consensus 144 ~~fD~I~~~~~~~------~~~~~l~~~Lkpg------G~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGP------DIPKPLIEQLKDG------GIMVIP 175 (212)
T ss_pred CCcCEEEECCCcc------cchHHHHHhhCCC------cEEEEE
Confidence 6899999865442 2334667789998 665554
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.02 E-value=1e-08 Score=91.39 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=72.5
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.+|||+|||+|.+++.++...+ .+|+++|+ +.+++.+++|+..++. ..++.+...||.+. +. ..+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~----~~--~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP----LA--GQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc----Cc--CCCcc
Confidence 6899999999999999987664 69999999 9999999999998874 33577777666541 11 23799
Q ss_pred EEEEcCccCCC-------------C------------CHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHD-------------H------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~-------------~------------~~~~ll~~l~~ll~~g 212 (282)
+|+++.+.... + .+..++..+.++|++|
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 99997432211 1 3556788888899998
No 91
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.02 E-value=6.3e-09 Score=89.52 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. +.+|+++|+ +.+++.++++....+. ..++.+...++.. ....|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~--------~~~~f 128 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES--------LLGRF 128 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh--------ccCCc
Confidence 4679999999999999999854 568999999 9999999998876542 2345555544322 24679
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHH
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFL 209 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll 209 (282)
|+|++.+++++.+ ....+++.+.+++
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 9999999986633 4556666666654
No 92
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.02 E-value=1.6e-08 Score=95.75 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|.. +++|+++|. +.+++.+++|+..|+. .++.+...|+.+.. .........|
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l-~~~~~~~~~f 368 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDF-TDQPWALGGF 368 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhh-hhhhhhcCCC
Confidence 4679999999999999999854 589999999 9999999999998874 24777776665421 1111123579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|++..+ |.- ....++.+.++ +++ +++++++.......+ .....+.+|+++.+.
T Consensus 369 D~Vi~dPP-r~g--~~~~~~~l~~~-~~~-------~ivyvSCnp~tlaRD--l~~L~~~gY~l~~i~ 423 (443)
T PRK13168 369 DKVLLDPP-RAG--AAEVMQALAKL-GPK-------RIVYVSCNPATLARD--AGVLVEAGYRLKRAG 423 (443)
T ss_pred CEEEECcC-CcC--hHHHHHHHHhc-CCC-------eEEEEEeChHHhhcc--HHHHhhCCcEEEEEE
Confidence 99998544 332 34555666553 444 677777643332222 222335789998775
No 93
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=1.9e-08 Score=86.25 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc---------cCCCcEEEEEEEeCCCCcc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS---------LRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~---------~~~~~v~~~~ld~~~~~~~ 174 (282)
++.+||++|||.|..++.+| ..|.+|+++|+ +.+++.+.. .+++... ....++.+..-|..+....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 46799999999999999998 56789999999 888887532 2222100 0123455555444432111
Q ss_pred chhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee--cC---c---ccHHHHHHHHhhc
Q 023457 175 DVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL--RR---W---KKDSVFFKKAKKL 244 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~--~~---~---~~~~~f~~~~~~~ 244 (282)
....||+|+-.-++.+ .+.....++.+.++|+|| |..+++.... .. + -...++.+.+...
T Consensus 113 ----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg------G~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~ 182 (218)
T PRK13255 113 ----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG------CRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGC 182 (218)
T ss_pred ----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC------CeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCC
Confidence 1257999997766554 345678999999999998 5444433211 11 1 1134455555555
Q ss_pred CceEEEcccCCCC---------CcccceEEEEEeee
Q 023457 245 FDVETIHADLPCN---------GARVGVVVYRMTGK 271 (282)
Q Consensus 245 f~ve~v~~~~~~~---------~~~~~~~v~~~~~~ 271 (282)
|+++.+......+ ....-..+|.++|+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T PRK13255 183 FEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLERK 218 (218)
T ss_pred ceEEEeeeccccccCchhhhcCcchhheEEEEEEeC
Confidence 8888776543211 12233467777764
No 94
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.01 E-value=4.5e-09 Score=89.89 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=88.7
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC-------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG-------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEA 173 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~-------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~ 173 (282)
....+.++||++||||-+++.+..... .+|++.|+ ++||...++.....++. .+ ....|...+.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~-----~~---~~~~w~~~dA 168 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK-----AS---SRVEWVEGDA 168 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC-----cC---CceEEEeCCc
Confidence 345689999999999999998875543 58999999 99999998877664431 11 1345666667
Q ss_pred cchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 174 NDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 174 ~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++++..+..||...++.-+.+..+++..+++..|+|+|| |++.++-
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG------Grf~cLe 214 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG------GRFSCLE 214 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC------cEEEEEE
Confidence 788877889999999999999999999999999999999 6665544
No 95
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.01 E-value=3.8e-09 Score=95.11 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=80.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..++.+++..+ .+++++|.+.+++.+++|+...+. .+++.+...|..+. . .+.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~---~----~~~~ 216 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE---S----YPEA 216 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----cceEEEEecCccCC---C----CCCC
Confidence 467999999999999999987765 689999998899999999988764 45677777665431 1 1347
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
|+|+.+.++|+... ...+++.+.+.|+|| |++++.
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pg------G~l~i~ 253 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSG------GRLLIL 253 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCC------CEEEEE
Confidence 99999999886543 467999999999998 666554
No 96
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.01 E-value=3.2e-09 Score=91.02 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~ 181 (282)
..+.+|||||||+|..+..+++ .+.+|+++|. +.+++.++.++..++. ..+.+...++.+ ... ...
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-----~~~~~~~ 111 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVED-----LAEKGAK 111 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHH-----hhcCCCC
Confidence 3578999999999999998875 4578999999 8999999998876542 124444333322 111 136
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|+++.++++......+++.+.++|+++
T Consensus 112 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 112 SFDVVTCMEVLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred CccEEEehhHHHhCCCHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999998
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=98.99 E-value=7.3e-09 Score=91.94 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCCC-HHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh-cccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTG-LVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA-NAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG-~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~-n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.+++|+|||||.| +.++.++... +++++++|. +++++.+++++.. .++ ..++.+...|..+. ...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~-----~~~ 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDV-----TES 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhc-----ccc
Confidence 6789999999966 4455555333 368999999 9999999998864 332 45677777665441 111
Q ss_pred CCCccEEEEcCccCC-CCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYH-DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~-~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|++.-++|. .+....+++.+.+.|+||
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhcCCC
Confidence 368999999944554 378999999999999998
No 98
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.99 E-value=1.5e-08 Score=86.55 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~ 155 (282)
-...|.+++..... .++.+||++|||.|..++.+| ..|.+|+++|+ +.+++.+.. .++....
T Consensus 19 p~~~l~~~~~~l~~-------------~~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~ 81 (213)
T TIGR03840 19 VNPLLVKHWPALGL-------------PAGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFA---ENGLTPT 81 (213)
T ss_pred CCHHHHHHHHhhCC-------------CCCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHH---HcCCCcc
Confidence 34567777754321 236799999999999999998 56789999999 888887533 1221100
Q ss_pred ---------cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 156 ---------LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 156 ---------~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
....++++...|+.+... ...++||.|+-.-++.+ .+.....++.+.++|+|| |.++++
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg------G~~ll~ 151 (213)
T TIGR03840 82 VTQQGEFTRYRAGNIEIFCGDFFALTA----ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG------ARQLLI 151 (213)
T ss_pred eeccccceeeecCceEEEEccCCCCCc----ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC------CeEEEE
Confidence 012345555555544211 01257999998766554 334577899999999998 665555
Q ss_pred EEeec--C---c---ccHHHHHHHHhhcCceEEEccc
Q 023457 225 MAHLR--R---W---KKDSVFFKKAKKLFDVETIHAD 253 (282)
Q Consensus 225 ~~~~~--~---~---~~~~~f~~~~~~~f~ve~v~~~ 253 (282)
+.... . . -......+.+...|+++.+...
T Consensus 152 ~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~ 188 (213)
T TIGR03840 152 TLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR 188 (213)
T ss_pred EEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence 43321 1 1 1134455555557888776644
No 99
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-09 Score=97.04 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.+++++|||+|||||.+++++|++++.+|+++|.+.+.+.+++.+..|+. .+.+.+..-...+ +..+.+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----~~ii~vi~gkvEd-----i~LP~e 126 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----EDVITVIKGKVED-----IELPVE 126 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----cceEEEeecceEE-----EecCcc
Confidence 457899999999999999999999888999999998888999999999985 4445555433322 222257
Q ss_pred CccEEEEc---CccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILAS---DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~s---d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.|+|++- .++++...++.++-.=.+.|++|
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~ 160 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEG 160 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCC
Confidence 89999974 34445556666666667888887
No 100
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=4.9e-09 Score=94.37 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=72.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..++. ..++.+...|+.+ .++ ..+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~----~l~--~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFA----ALP--GRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhh----hCC--CCCcc
Confidence 6899999999999999986653 69999999 9999999999998774 3457777666543 111 34799
Q ss_pred EEEEcCccCCC-------------------------CCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHD-------------------------HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~-------------------------~~~~~ll~~l~~ll~~g 212 (282)
+|+++.+.... ..+..+++.+.++|+||
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 99997543211 11357788888999998
No 101
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.98 E-value=6.1e-10 Score=93.68 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=84.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~~~~ 182 (282)
=+++||||||||+.|..+ +....+.+++|+ .+|++.+.++-.-..+. + .+ ...+. ....+
T Consensus 126 F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~YD~L~---------~-----Ae--a~~Fl~~~~~er 188 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGLYDTLY---------V-----AE--AVLFLEDLTQER 188 (287)
T ss_pred cceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccchHHHH---------H-----HH--HHHHhhhccCCc
Confidence 359999999999999998 467789999999 88998886532211110 0 00 00011 12568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE-----------eecCcccHHHHHH-HHh-hcCceEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA-----------HLRRWKKDSVFFK-KAK-KLFDVET 249 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~-----------~~~~~~~~~~f~~-~~~-~~f~ve~ 249 (282)
||+|.++||+-+...++.++.....+|++| |-+.|-+- ..+|+...+.+.. .+. .||++-.
T Consensus 189 ~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g------GlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 189 FDLIVAADVLPYLGALEGLFAGAAGLLAPG------GLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred ccchhhhhHHHhhcchhhHHHHHHHhcCCC------ceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 999999999999999999999999999998 44444332 2233433444444 333 4887766
Q ss_pred Eccc
Q 023457 250 IHAD 253 (282)
Q Consensus 250 v~~~ 253 (282)
+...
T Consensus 263 ~~~t 266 (287)
T COG4976 263 IEDT 266 (287)
T ss_pred eecc
Confidence 5544
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.97 E-value=1.1e-08 Score=98.20 Aligned_cols=129 Identities=21% Similarity=0.333 Sum_probs=85.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||||||+|.+++.++... +++|+++|+ +.+++.++.|+..++. .+++.+...||.. .+ ...+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~----~~--~~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFE----NI--EKQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhh----hC--cCCC
Confidence 35689999999999999988665 479999999 9999999999988764 3456666666543 11 1357
Q ss_pred ccEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHH
Q 023457 183 FDVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSV 236 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~ 236 (282)
||+|+++.+..... .+..+++.+.++|+++ |.+++-.. +.....
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g------G~l~lEig----~~q~~~ 276 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN------GKIILEIG----FKQEEA 276 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC------CEEEEEEC----CchHHH
Confidence 99999975432110 1345677788899998 55544322 112233
Q ss_pred HHHHHh-hcCceEEEcccC
Q 023457 237 FFKKAK-KLFDVETIHADL 254 (282)
Q Consensus 237 f~~~~~-~~f~ve~v~~~~ 254 (282)
....+. .+|....+..+.
T Consensus 277 v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 277 VTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred HHHHHHhcCCCceEEEecC
Confidence 333333 477665554443
No 103
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=4.7e-09 Score=88.00 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--C
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV--G 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~--~ 180 (282)
..+.+||||+||+|.+|+.++.+++++|+++|. +.+++.+++|++.|+. ..++.+...|... .+... .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~----~l~~~~~~ 118 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALR----ALKFLAKK 118 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHH----HHHHhhcc
Confidence 358899999999999999999776679999999 9999999999999874 2345555544322 11111 2
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHH--HHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRL--FLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~--ll~~g 212 (282)
..++.||..|+-|.....+.++..+.. +++++
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 234445555888877777777776644 45444
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.97 E-value=1.4e-08 Score=92.43 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||||...+.++ ..+.+|+++|+ +.|+..++.|+..++.. .+.+...|..+ ++.....
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~------~i~~~~~D~~~-----l~~~~~~ 248 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIE------DFFVKRGDATK-----LPLSSES 248 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCC------CCeEEecchhc-----CCcccCC
Confidence 457899999999999998876 45789999999 99999999999887641 24444433332 2222468
Q ss_pred ccEEEEcCccCCC---------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 183 FDVILASDVVYHD---------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 183 fD~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
||+|+++.+.-.. ..+..+++.+.++|++| |.++++...
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g------G~lv~~~~~ 296 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE------GWIVYAVPT 296 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC------cEEEEEEcC
Confidence 9999997553211 12578999999999998 777776654
No 105
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=4.4e-09 Score=90.91 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
++.+|||||||+|.++..++... ..+|+++|+ +.|++.++.+...++ +.+...+-.. ++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~-----l~~ 125 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------VTFRQAVSDE-----LVA 125 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------CeEEEEeccc-----ccc
Confidence 46799999999999998887432 248999999 999999988754332 2222222111 122
Q ss_pred cCCCccEEEEcCccCCCCC--HHHHHHHHHHHHh
Q 023457 179 VGREFDVILASDVVYHDHL--FDPLLVTLRLFLN 210 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~ 210 (282)
.+.+||+|+++.+++|..+ ...+++.+.++++
T Consensus 126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 2568999999999998765 3468888888775
No 106
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=2e-08 Score=90.85 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=80.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|. .+++|+++|. +.+++.+++|+..|+. .++.+...|..+. .......|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~----~~~~~~~~ 241 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQF----ATAQGEVP 241 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHH----HHhcCCCC
Confidence 367999999999999999985 4589999999 9999999999998874 2466665444321 11123479
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|+...+ + ......+++.+.+ +.++ +++++++.......+ +..+ .+|+++.+.
T Consensus 242 D~Vv~dPP-r-~G~~~~~~~~l~~-~~~~-------~ivyvsc~p~t~~rd---~~~l-~~y~~~~~~ 295 (315)
T PRK03522 242 DLVLVNPP-R-RGIGKELCDYLSQ-MAPR-------FILYSSCNAQTMAKD---LAHL-PGYRIERVQ 295 (315)
T ss_pred eEEEECCC-C-CCccHHHHHHHHH-cCCC-------eEEEEECCcccchhH---Hhhc-cCcEEEEEE
Confidence 99999765 2 2234455555443 2333 666666543332222 2222 589888776
No 107
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=3.7e-08 Score=85.10 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=75.0
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
--|+.-..+-..++...+. ...++..|||+|||+|..++.++..++ ..|+|+|. +.++.++.+|+.++
T Consensus 126 PRpETEE~V~~Vid~~~~~----------~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNS----------EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL 195 (328)
T ss_pred cCccHHHHHHHHHHHHhhh----------hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH
Confidence 3566665555555444332 224456899999999999999986665 68999999 99999999999998
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV 192 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l 192 (282)
.+ .+++.+.+.+.........+...+++|+|+++.+.
T Consensus 196 ~l-----~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 196 KL-----SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred hh-----cCceEEEecccccccccccccccCceeEEecCCCc
Confidence 86 67788886654432222223346789999998653
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=3.4e-08 Score=87.33 Aligned_cols=96 Identities=26% Similarity=0.462 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++.+|||+|||+|..++.++...+ .+|+++|+ +.+++.+++|+..+. ..++.+...|+... +. ..+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~------~~~i~~~~~d~~~~----~~--~~~ 175 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL------GARVEFLQGDWFEP----LP--GGR 175 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC------CCcEEEEEccccCc----CC--CCc
Confidence 467999999999999999986653 79999999 999999999988221 34677777766441 11 368
Q ss_pred ccEEEEcCccCCCC--------------------------CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDH--------------------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~--------------------------~~~~ll~~l~~ll~~g 212 (282)
||+|+++.+..... .+..+++.+.++|++|
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 99999975532211 1356777888999998
No 109
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.94 E-value=8e-09 Score=86.97 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
...+|||||||+|..++.+|...+ ..|+++|+ +.+++.+++++..++. .++.+...|.... .........
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~--~~~~~~~~~ 87 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANEL--LDKFFPDGS 87 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHH--HHhhCCCCc
Confidence 356999999999999999987654 68999999 9999999999887653 2566655444320 000011347
Q ss_pred ccEEEEcCcc--CCCC------CHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVV--YHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~l--y~~~------~~~~ll~~l~~ll~~g 212 (282)
+|.|+++-+. +... ..+.+++.+.++|++|
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 9999986432 2111 1267999999999998
No 110
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.94 E-value=1.5e-08 Score=85.24 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-hhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~~~~~~ 182 (282)
++.+|||||||+|..+..++...+..++++|+ +.++..++.+ .+.+...+..+ .+ +....+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~----~l~~~~~~s 75 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDE----GLEAFPDKS 75 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhh----cccccCCCC
Confidence 36799999999999998887555678899999 8888776531 12333334332 11 122468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHh
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLN 210 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~ 210 (282)
||+|+++.++++..+...+++.+.+.++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 9999999999999888888887776654
No 111
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.94 E-value=4.3e-09 Score=87.94 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=79.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+..+|.|||||+|..+-.++++.+ +.|+++|. ++|++.++... .++++..-|...+. +..
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~------p~~ 91 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWK------PEQ 91 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcC------CCC
Confidence 3466999999999999999987775 79999999 99999986532 23444444433321 146
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
.+|+|+++-++.+.+++..++..+...|.|| |.+.+-+..
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg------g~LAVQmPd 131 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPG------GVLAVQMPD 131 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCC------ceEEEECCC
Confidence 8999999999999999999999999999999 566665543
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.92 E-value=1.1e-08 Score=75.02 Aligned_cols=95 Identities=29% Similarity=0.353 Sum_probs=71.9
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
+|+|+|||+|..+..++.....+++++|. +.++..++++...+. ...+.+...++.+... ....+||+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPP----EADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhcc----ccCCceEEE
Confidence 58999999999998887535579999999 888888875433322 2345565555554211 124689999
Q ss_pred EEcCccCC-CCCHHHHHHHHHHHHhcC
Q 023457 187 LASDVVYH-DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 187 i~sd~ly~-~~~~~~ll~~l~~ll~~g 212 (282)
+++.++++ ......+++.+.++++++
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHcCCC
Confidence 99999988 888999999999999998
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.92 E-value=8.9e-08 Score=90.17 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=85.5
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
..-.++..++.++. ..+|.+|||+|||+|..++.++...+ ++|+++|+ +.+++.+++|+..+
T Consensus 222 ~Qd~~s~~~~~~L~----------------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~ 285 (426)
T TIGR00563 222 VQDASAQWVATWLA----------------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL 285 (426)
T ss_pred EECHHHHHHHHHhC----------------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 44567787777772 23478999999999999999986654 79999999 99999999999987
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc------CccCCCCC----------------HHHHHHHHHHH
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS------DVVYHDHL----------------FDPLLVTLRLF 208 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s------d~ly~~~~----------------~~~ll~~l~~l 208 (282)
+. ...+.....+... .... ....+||.|++. .++...+. ...++..+.++
T Consensus 286 g~-----~~~v~~~~~d~~~--~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~ 357 (426)
T TIGR00563 286 GL-----TIKAETKDGDGRG--PSQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL 357 (426)
T ss_pred CC-----CeEEEEecccccc--cccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 64 1122222222211 0000 124579999962 23332222 35788999999
Q ss_pred HhcCCCCCCCceEEEEEEee
Q 023457 209 LNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 209 l~~g~~~~~~g~~~il~~~~ 228 (282)
|+|| |.+++..+..
T Consensus 358 Lkpg------G~lvystcs~ 371 (426)
T TIGR00563 358 LKTG------GTLVYATCSV 371 (426)
T ss_pred cCCC------cEEEEEeCCC
Confidence 9999 7777766654
No 114
>PRK06922 hypothetical protein; Provisional
Probab=98.92 E-value=7.2e-09 Score=100.21 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~ 179 (282)
.++.+|||+|||+|..+..++... +.+|+++|+ +.|++.++++...++ .++.+...|..+ ++ ..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~d-----Lp~~fe 484 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAIN-----LSSSFE 484 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHh-----CccccC
Confidence 357899999999999988887554 479999999 899999998876433 133443333222 21 22
Q ss_pred CCCccEEEEcCccCCC-------------CCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 180 GREFDVILASDVVYHD-------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~-------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+++||+|+++.++++. .....+++.+.++|+|| |.+++.
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG------GrLII~ 536 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG------GRIIIR 536 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC------cEEEEE
Confidence 4689999998777532 35678999999999998 565554
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.91 E-value=1.3e-07 Score=83.41 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred CccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHH
Q 023457 69 GLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 69 g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~ 145 (282)
|.-.....++.+.+..| ...+|.+|||+|||+|..++.++...+ +.|+++|+ +.+++.+++
T Consensus 51 G~~~~qd~~s~~~~~~l----------------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~ 114 (264)
T TIGR00446 51 GLYYIQEASSMIPPLAL----------------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA 114 (264)
T ss_pred CeEEEECHHHHHHHHHh----------------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 43334566776666555 123478999999999999999886653 58999999 999999999
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC------C----------------CHHHHHH
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD------H----------------LFDPLLV 203 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~------~----------------~~~~ll~ 203 (282)
|+..++. .++.+...|... +......||+|++..+.... + ....+++
T Consensus 115 n~~~~g~------~~v~~~~~D~~~-----~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~ 183 (264)
T TIGR00446 115 NINRCGV------LNVAVTNFDGRV-----FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELID 183 (264)
T ss_pred HHHHcCC------CcEEEecCCHHH-----hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHH
Confidence 9998773 235555433222 22223469999974332211 0 1245888
Q ss_pred HHHHHHhcCCCCCCCceEEEEEEe
Q 023457 204 TLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 204 ~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
.+.++++|| |.+++..+.
T Consensus 184 ~a~~~lkpg------G~lvYstcs 201 (264)
T TIGR00446 184 SAFDALKPG------GVLVYSTCS 201 (264)
T ss_pred HHHHhcCCC------CEEEEEeCC
Confidence 888999998 666655444
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=3.9e-08 Score=83.80 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=69.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||+|||+|..+..++.. ..+|+++|. +.+++.+++|+..++. .++.+...+... .+. ...+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~-~~~~ 144 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWK----GWP-AYAP 144 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCccc----CCC-cCCC
Confidence 35789999999999999888754 469999999 9999999999987653 235555544322 111 1367
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|++...+. .+.+.+.++|++| |.+++..
T Consensus 145 fD~I~~~~~~~------~~~~~l~~~L~~g------G~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAP------EIPRALLEQLKEG------GILVAPV 175 (212)
T ss_pred cCEEEEccCch------hhhHHHHHhcCCC------cEEEEEE
Confidence 99999875442 3345677899998 5655543
No 117
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=2.3e-08 Score=86.62 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--c
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~ 179 (282)
++++|||||||+|..++.++... .++|+++|. +++++.+++|++.++. .+++.+...+..+.. ..+.. .
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L-~~l~~~~~ 141 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSAL-DQLLNNDP 141 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHH-HHHHhCCC
Confidence 47799999999999988887654 369999999 9999999999999885 456777665544310 01111 1
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|+.- .- ...+..++..+.+++++|
T Consensus 142 ~~~fD~VfiD-a~--k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 142 KPEFDFAFVD-AD--KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CCCCCEEEEC-CC--HHHHHHHHHHHHHhcCCC
Confidence 3589999983 21 245678889999999998
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=1.9e-07 Score=88.01 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~ 179 (282)
.+|.+|||+|||+|..++.++... +++|+++|+ +.+++.+++|+...+. ..+.+...|... +. ..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~-----l~~~~ 304 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAER-----LTEYV 304 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhh-----hhhhh
Confidence 347899999999999999988665 479999999 9999999999998763 235555544433 11 12
Q ss_pred CCCccEEEEcCccCC------CC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 180 GREFDVILASDVVYH------DH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~------~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
...||.|++.-+... .+ ....++..+.++|+|| |.+++..+..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG------G~LvYsTCs~ 369 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG------GILLYSTCTV 369 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC------CEEEEEECCC
Confidence 457999997322211 11 1356788889999998 6766655543
No 119
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=5.1e-09 Score=88.91 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=74.5
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
.++|+|||+|..++.+|. ...+|++||+ +.||+.+++.-.. +-......+.+....++...+++.|+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~----------~y~~t~~~ms~~~~v~L~g~e~SVDlI 104 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPV----------TYCHTPSTMSSDEMVDLLGGEESVDLI 104 (261)
T ss_pred eEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCc----------ccccCCccccccccccccCCCcceeee
Confidence 899999999988888874 4689999999 9999987652211 111111122222222333336799999
Q ss_pred EEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 187 LASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 187 i~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
+++.++|+. +.+.+.+.+.++|++. |+++.+..+....
T Consensus 105 ~~Aqa~HWF-dle~fy~~~~rvLRk~------Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 105 TAAQAVHWF-DLERFYKEAYRVLRKD------GGLIAVWNYNDDF 142 (261)
T ss_pred hhhhhHHhh-chHHHHHHHHHHcCCC------CCEEEEEEccCCC
Confidence 999999876 6889999999999998 5566666554333
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.88 E-value=2.8e-08 Score=87.13 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||+|||+|.+++.++... +.+|+++|+ +.+++.+++|.. ++.+..-|... +. ...+|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e-----~~-~~~kF 127 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFE-----FE-SNEKF 127 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhh-----hc-ccCCC
Confidence 4589999999999999887654 479999999 999999887632 22333322222 11 13579
Q ss_pred cEEEEcCccCCCCC--------------------HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc---cHHHHHHH
Q 023457 184 DVILASDVVYHDHL--------------------FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK---KDSVFFKK 240 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--------------------~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~---~~~~f~~~ 240 (282)
|+|+++.++++... +..+++....+|+|+ |...++....+-|. ...++...
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~------G~~~~~yss~~~y~~sl~~~~y~~~ 201 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPT------GSAGFAYSGRPYYDGTMKSNKYLKW 201 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCC------ceEEEEEeccccccccCCHHHHHHH
Confidence 99999998875321 245666667777887 55444433323222 13444444
Q ss_pred Hh-hcCce
Q 023457 241 AK-KLFDV 247 (282)
Q Consensus 241 ~~-~~f~v 247 (282)
++ .||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 44 36654
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.87 E-value=5.7e-09 Score=87.01 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..|.+||||-||||.+|+.++.+++++|+++|. +.++..+++|++.-+. ..++.+...|.... .........+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~-l~~~~~~~~~ 114 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKF-LLKLAKKGEK 114 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHH-HHHHHHCTS-
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHH-HHhhcccCCC
Confidence 358899999999999999998888899999999 9999999999997664 23455554332210 0011112578
Q ss_pred ccEEEEcCccCCCCC-HHHHHHHHH--HHHhcC
Q 023457 183 FDVILASDVVYHDHL-FDPLLVTLR--LFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~-~~~ll~~l~--~ll~~g 212 (282)
||+|++ |+-|.... +..++..+. .+|+++
T Consensus 115 fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~ 146 (183)
T PF03602_consen 115 FDIIFL-DPPYAKGLYYEELLELLAENNLLNED 146 (183)
T ss_dssp EEEEEE---STTSCHHHHHHHHHHHHTTSEEEE
T ss_pred ceEEEE-CCCcccchHHHHHHHHHHHCCCCCCC
Confidence 999988 77777776 488888887 567765
No 122
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.87 E-value=5.1e-08 Score=90.24 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+.+|||||||+|..++.+|. .+.+|+++|. +.+++.+++|+..|+. .++.+...|..+. ......+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~----~~~~~~~~ 301 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKF----ATAQMSAP 301 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHH----HHhcCCCC
Confidence 367999999999999999984 4589999999 9999999999998874 2456655444321 11112469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
|+|++..+ |. .....+++.+.. ++|+ +++++.+.......+-. .+ .+|+++.+.
T Consensus 302 D~vi~DPP-r~-G~~~~~l~~l~~-~~p~-------~ivyvsc~p~TlaRDl~---~L-~gy~l~~~~ 355 (374)
T TIGR02085 302 ELVLVNPP-RR-GIGKELCDYLSQ-MAPK-------FILYSSCNAQTMAKDIA---EL-SGYQIERVQ 355 (374)
T ss_pred CEEEECCC-CC-CCcHHHHHHHHh-cCCC-------eEEEEEeCHHHHHHHHH---Hh-cCceEEEEE
Confidence 99998655 43 455667777754 4554 66776654332222222 22 689998765
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.86 E-value=3.1e-08 Score=87.25 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
++++|||||||+|.++..++...+ .+|+++|+ +.+++.++++...+.. ..++.+..-|..+ .+.....+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~----~l~~~~~~ 136 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAE----YIAVHRHS 136 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHH----HHHhCCCC
Confidence 367899999999999998876654 68999999 9999999988765431 3456665533322 12222468
Q ss_pred ccEEEEcCccCCCC-----CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 183 FDVILASDVVYHDH-----LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 183 fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
||+|++. .+.... ....+++.+.++|+|+ |.+++... .+......+++.+++.|.
T Consensus 137 yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pg------Gvlvin~~--~~~~~~~~~l~~l~~~F~ 196 (262)
T PRK04457 137 TDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSD------GIFVVNLW--SRDKRYDRYLERLESSFE 196 (262)
T ss_pred CCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCC------cEEEEEcC--CCchhHHHHHHHHHHhcC
Confidence 9999973 322111 2378999999999998 55544322 222235667777777785
No 124
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.86 E-value=2.1e-08 Score=82.99 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-hcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~ 182 (282)
+|.+|||||||.|.+--.+....+.+..++|+ ++.+..+.+ + .+.+.+.|... .+. ..+++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r---------Gv~Viq~Dld~----gL~~f~d~s 75 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R---------GVSVIQGDLDE----GLADFPDQS 75 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c---------CCCEEECCHHH----hHhhCCCCC
Confidence 47899999999999988887656788999999 654443322 1 34567766665 232 34789
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHH
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFL 209 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll 209 (282)
||+||++.++......+.+++.+.|+-
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVg 102 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVG 102 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhc
Confidence 999999999988888888877765543
No 125
>PLN02672 methionine S-methyltransferase
Probab=98.86 E-value=6.1e-08 Score=99.13 Aligned_cols=83 Identities=22% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccc----------ccCCCcEEEEEEEeCCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLI----------SLRGGSVHVAPLRWGEAE 172 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~----------~~~~~~v~~~~ld~~~~~ 172 (282)
++++|||||||+|.+++.+++..+ ++|+++|+ +.+++.+++|+..|+... +....++.+..-||...
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 467999999999999999987764 79999999 999999999999886420 00124677777777652
Q ss_pred ccchhhcCCCccEEEEcCc
Q 023457 173 ANDVAVVGREFDVILASDV 191 (282)
Q Consensus 173 ~~~~~~~~~~fD~Ii~sd~ 191 (282)
+.....+||+||++.+
T Consensus 197 ---~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 197 ---CRDNNIELDRIVGCIP 212 (1082)
T ss_pred ---ccccCCceEEEEECCC
Confidence 1111236999999855
No 126
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.85 E-value=2.2e-08 Score=95.52 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|..+..++.. ..+|+++|+ +.+++.++. .++. ..++.+...+.... .++....+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~---~~~~-----~~~i~~~~~d~~~~---~~~~~~~~f 104 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES---INGH-----YKNVKFMCADVTSP---DLNISDGSV 104 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH---Hhcc-----CCceEEEEeccccc---ccCCCCCCE
Confidence 4679999999999999999854 579999999 888876543 2221 23556666555431 122235689
Q ss_pred cEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
|+|+++.++++... ...+++.+.++|+||
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987654 678999999999998
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=1.1e-07 Score=78.17 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++|+.. ..++.+...|+.+. ......
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~-----~~~~~~ 77 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKF-----DLPKLQ 77 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcC-----CccccC
Confidence 34679999999999999999865 689999999 8999999988753 22556665554441 112336
Q ss_pred ccEEEEcCcc
Q 023457 183 FDVILASDVV 192 (282)
Q Consensus 183 fD~Ii~sd~l 192 (282)
||+|+++.+.
T Consensus 78 ~d~vi~n~Py 87 (169)
T smart00650 78 PYKVVGNLPY 87 (169)
T ss_pred CCEEEECCCc
Confidence 8999986544
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4e-08 Score=82.55 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=70.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|..+-.+| ++..+|+.+|. +...+.+++|+...+. .++.+..-|=.. .++ ...+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~----G~~-~~aP 138 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSK----GWP-EEAP 138 (209)
T ss_pred CCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCccc----CCC-CCCC
Confidence 458899999999999999998 45569999999 9999999999998774 246665533222 111 1468
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||.|+..-..- ..++. +..-|++| |++++-..
T Consensus 139 yD~I~Vtaaa~--~vP~~----Ll~QL~~g------Grlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAP--EVPEA----LLDQLKPG------GRLVIPVG 170 (209)
T ss_pred cCEEEEeeccC--CCCHH----HHHhcccC------CEEEEEEc
Confidence 99999864442 22344 44567888 67766554
No 129
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.83 E-value=1.2e-08 Score=89.93 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCH----HHHHHHHHh------CCEEEEEeh-HhHHHHHHHHHHh----cccc----------------
Q 023457 105 CQLNILELGSGTGL----VGMAAAAIL------GAKVTVTDL-PHVLTNLQFNVDA----NAGL---------------- 153 (282)
Q Consensus 105 ~g~~VLELGcGtG~----~si~la~~~------~~~V~~tD~-~~~l~~~~~n~~~----n~~~---------------- 153 (282)
++.+|+++|||||- +++.++... ..+|++||+ +.|++.+++.+-. ....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999996 455555433 258999999 9999999875411 0000
Q ss_pred cc-cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 154 IS-LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 ~~-~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
+. ....++.+...|..+ .+...++||+|++..++.+.. ....+++.+.+.|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~-----~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLA-----ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCC-----CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00 001245555544443 112256899999998887654 5568999999999998
No 130
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.82 E-value=1.2e-07 Score=77.42 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=93.6
Q ss_pred eeehh---HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHH
Q 023457 73 KLWPA---ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 73 ~~W~~---a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~ 147 (282)
.+|-+ -....+||..+.... +......+|||||||.|.+-..+++..- ...+++|+ +.++++++...
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~--------rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niA 111 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVIS--------RVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIA 111 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhh--------hhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHH
Confidence 57754 355666776654311 0111223999999999999999886543 45999999 99999987766
Q ss_pred HhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCc---cCC-----CCCHHHHHHHHHHHHhcCCCCCCCc
Q 023457 148 DANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDV---VYH-----DHLFDPLLVTLRLFLNSGEPEPKKK 219 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~---ly~-----~~~~~~ll~~l~~ll~~g~~~~~~g 219 (282)
++++. .+.+++.++|..+++ ...++||+|+--.. +-- ..-+...+..+.++|+|+ |
T Consensus 112 e~~~~-----~n~I~f~q~DI~~~~-----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~------g 175 (227)
T KOG1271|consen 112 ERDGF-----SNEIRFQQLDITDPD-----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG------G 175 (227)
T ss_pred HhcCC-----CcceeEEEeeccCCc-----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC------c
Confidence 77764 556999999988731 12467787773221 110 112245678889999998 6
Q ss_pred eEEEEEEeecCcccHHHHHHHHhh-cCce
Q 023457 220 KMNFVMAHLRRWKKDSVFFKKAKK-LFDV 247 (282)
Q Consensus 220 ~~~il~~~~~~~~~~~~f~~~~~~-~f~v 247 (282)
.++|.++ ++ +..+..+.... +|.+
T Consensus 176 ifvItSC---N~-T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 176 IFVITSC---NF-TKDELVEEFENFNFEY 200 (227)
T ss_pred EEEEEec---Cc-cHHHHHHHHhcCCeEE
Confidence 6666554 33 34555555543 4543
No 131
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.5e-07 Score=76.70 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+.+||||||+|.++-++++..+ +.+.+||+ +.+++...+.+..|+. .+.+..-|... .+. .++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------~~~~V~tdl~~----~l~--~~~ 110 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------HIDVVRTDLLS----GLR--NES 110 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------ccceeehhHHh----hhc--cCC
Confidence 56899999999999999987665 57899999 9999999998888874 23344433332 111 367
Q ss_pred ccEEEEcCccCCC---------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH
Q 023457 183 FDVILASDVVYHD---------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA 241 (282)
Q Consensus 183 fD~Ii~sd~ly~~---------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~ 241 (282)
.|+++-+...--. +..+.++..+..+|.|. |.++++.. .++. ..+.++.+
T Consensus 111 VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~------Gv~Ylv~~-~~N~--p~ei~k~l 181 (209)
T KOG3191|consen 111 VDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR------GVFYLVAL-RANK--PKEILKIL 181 (209)
T ss_pred ccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC------ceEEeeeh-hhcC--HHHHHHHH
Confidence 8888876443211 12567777777888887 45555443 3442 34455544
Q ss_pred h-hcCceEEEcccCCCCCcccceEEEEEee
Q 023457 242 K-KLFDVETIHADLPCNGARVGVVVYRMTG 270 (282)
Q Consensus 242 ~-~~f~ve~v~~~~~~~~~~~~~~v~~~~~ 270 (282)
+ ++|.+.....+.. ....+.+++++|
T Consensus 182 ~~~g~~~~~~~~Rk~---~~E~l~ilkf~r 208 (209)
T KOG3191|consen 182 EKKGYGVRIAMQRKA---GGETLSILKFTR 208 (209)
T ss_pred hhcccceeEEEEEec---CCceEEEEEEEe
Confidence 4 5888876654432 224466777765
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=5e-07 Score=85.58 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||+|||+|..++.++... +++|+++|+ +.+++.+++|+..++. .++.+...|... +. ..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~-----~~-~~ 316 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARS-----FS-PE 316 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccc-----cc-cC
Confidence 347899999999999998887654 369999999 9999999999988763 245555544433 11 23
Q ss_pred CCccEEEEcC------ccCCCC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 181 REFDVILASD------VVYHDH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 181 ~~fD~Ii~sd------~ly~~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
..||+|++-. ++...+ ....++..+.++++|| |.+++..+..
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg------G~lvystcs~ 380 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG------GVLVYATCSI 380 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC------cEEEEEeCCC
Confidence 5799999621 111110 1236899999999999 6777765543
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.4e-07 Score=81.08 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=81.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+|.+|||.|.|+|.++..+|...+ ++|+..|+ ++.++.+++|+...++ .+++....-|..+. .
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~-----~- 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREG-----I- 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccc-----c-
Confidence 446799999999999999999986554 69999999 9999999999998764 34466655444331 1
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
....||.|+. +.++...++..+..+|+|| |.+++.++.
T Consensus 160 ~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpg------g~~~~y~P~ 197 (256)
T COG2519 160 DEEDVDAVFL-----DLPDPWNVLEHVSDALKPG------GVVVVYSPT 197 (256)
T ss_pred cccccCEEEE-----cCCChHHHHHHHHHHhCCC------cEEEEEcCC
Confidence 1238999998 3468899999999999999 676666554
No 134
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.79 E-value=7.4e-08 Score=85.36 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=63.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
...+|||+|||+|..+..++...+ ..|+++|+ +.++..++++. ..+.+...+.. .++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~-----~lp~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSH-----RLPFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecc-----cCCCc
Confidence 356899999999999988875543 37999999 99999887642 12333333322 23333
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
++.||+|++... . ..++.+.++|+|| |.++++.
T Consensus 149 ~~sfD~I~~~~~---~----~~~~e~~rvLkpg------G~li~~~ 181 (272)
T PRK11088 149 DQSLDAIIRIYA---P----CKAEELARVVKPG------GIVITVT 181 (272)
T ss_pred CCceeEEEEecC---C----CCHHHHHhhccCC------CEEEEEe
Confidence 568999998532 2 2457888999998 6665554
No 135
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=89.44 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=60.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEE-EeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPL-RWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~l-d~~~~~~~~~~~~~ 180 (282)
.+.+|||||||+|.+...++.+ .+.+++++|+ +.+++.+++|++.| ++ ..++.+... +-.. ....+....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~-i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKA-IFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhh-hhhcccccC
Confidence 4679999999999877666644 3579999999 99999999999999 54 445655421 1111 000111124
Q ss_pred CCccEEEEcCccCCCC
Q 023457 181 REFDVILASDVVYHDH 196 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~ 196 (282)
..||+|+++.++|...
T Consensus 188 ~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 188 ERFDATLCNPPFHASA 203 (321)
T ss_pred CceEEEEeCCCCcCcc
Confidence 5899999999988644
No 136
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=1.9e-09 Score=93.89 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=80.6
Q ss_pred cceeehhHHHHHHHHhhcC-CCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH-HHH
Q 023457 71 SFKLWPAATTLVTLLDQFC-SHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ-FNV 147 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~-~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~-~n~ 147 (282)
|.++|.++..|..++.... .. -.+.+++|||||||+|+.++.+.......+.+.|+ ...++... .|+
T Consensus 91 g~k~wecS~dl~~~l~~e~~~~----------~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 91 GLKLWECSVDLLPYLKEEIGAQ----------MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred ceEEeecHHHHHHHHHHHhhhh----------eEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 7899999999999997542 22 24679999999999999999998776689999999 76663322 222
Q ss_pred HhcccccccCCCc---EEEEEE---EeCCCCccchhhcC--CCccEEEEcCccCCCCCHHHH-HHHHHHHHhcC
Q 023457 148 DANAGLISLRGGS---VHVAPL---RWGEAEANDVAVVG--REFDVILASDVVYHDHLFDPL-LVTLRLFLNSG 212 (282)
Q Consensus 148 ~~n~~~~~~~~~~---v~~~~l---d~~~~~~~~~~~~~--~~fD~Ii~sd~ly~~~~~~~l-l~~l~~ll~~g 212 (282)
..|...-..+.+. ..+..- ||.. ... ..||+|+++..+|.......+ ..+...++++.
T Consensus 161 ~~~~~~~~~~~e~~~~~~i~~s~l~dg~~-------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D 227 (282)
T KOG2920|consen 161 LVNSHAGVEEKENHKVDEILNSLLSDGVF-------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTD 227 (282)
T ss_pred ecchhhhhhhhhcccceeccccccccchh-------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCcc
Confidence 2221100000000 011111 3311 112 389999999999999888877 44444555555
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.77 E-value=3.8e-08 Score=84.43 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
+.+|||+|||+|.+++.++... ..+|+++|+ +.+++.++.|+.. +.+..-|+.. .. ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~~-----~~-~~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADALT-----TE-FD 112 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchhc-----cc-cc
Confidence 5699999999999999988642 358999999 9999999987531 2333333322 11 14
Q ss_pred CCccEEEEcCccCCCC------------CHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDH------------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~------------~~~~ll~~l~~ll~~g 212 (282)
.+||+||++.+.+... ....++....+++++|
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 5899999998887321 1456888888877776
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.76 E-value=1.2e-06 Score=73.32 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-ch--h
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DV--A 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~--~ 177 (282)
.++.+|||||||+|.++..++.... .+|+++|+ +.+ . ...+.+...++.+.... .+ .
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---------CCCceEEEeeCCChhHHHHHHHH
Confidence 4588999999999999998886652 57999999 533 0 11345555555441100 00 0
Q ss_pred hcCCCccEEEEcCccC----C-CC------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCc
Q 023457 178 VVGREFDVILASDVVY----H-DH------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFD 246 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly----~-~~------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ 246 (282)
....+||+|++....+ + .. ..+.++..+.++|+|| |.+++.... ......++..+++.|.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg------G~lvi~~~~---~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK------GNFVVKVFQ---GEEIDEYLNELRKLFE 164 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC------CEEEEEEcc---CccHHHHHHHHHhhhc
Confidence 1245799999853321 1 11 1367899999999998 666654422 2234566676666664
Q ss_pred eEEEc
Q 023457 247 VETIH 251 (282)
Q Consensus 247 ve~v~ 251 (282)
-..+.
T Consensus 165 ~~~~~ 169 (188)
T TIGR00438 165 KVKVT 169 (188)
T ss_pred eEEEe
Confidence 33333
No 139
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.76 E-value=3.3e-08 Score=87.60 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=78.0
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.++.++.|||+|||+|.+++++|.+++++|++++-++|.+.+++-++.|.+ .+++.+......+ ++ .++
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----~~rItVI~GKiEd-----ie-LPE 242 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----ADRITVIPGKIED-----IE-LPE 242 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----cceEEEccCcccc-----cc-Cch
Confidence 568899999999999999999998888999999999999999999999874 5677777644433 22 257
Q ss_pred CccEEEEcCc---cCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDV---VYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~---ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.|+||+-.+ +++...++..+- .++.|+|+
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~ 275 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLH-ARKWLKPN 275 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHH-HHhhcCCC
Confidence 8999998644 445555665553 34889988
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.75 E-value=1.1e-07 Score=85.53 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
++.+|||||||+|..+..++..+ +.+|+++|+ ++||+.+++++..... ..++.....|+.+. ..+...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~--~~~~~~~~ 135 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQP--LALPPEPA 135 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccch--hhhhcccc
Confidence 46789999999999999888776 479999999 9999999988765321 22344445555431 111110
Q ss_pred CCCccEEEEcCccCCC--CCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHD--HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g 212 (282)
.....++++..++++. +....+++.+.+.|+||
T Consensus 136 ~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 1123345555566654 34667999999999998
No 141
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.75 E-value=2.9e-07 Score=84.82 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-------
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV------- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~------- 178 (282)
.+||||+||+|.+++.+++ ...+|+++|. +.+++.+++|+..|+. .++.+...|..+... .+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~-~~~~~~~~~~~ 279 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQ-AMNGVREFNRL 279 (362)
T ss_pred CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHH-HHhhccccccc
Confidence 4799999999999998874 4579999999 9999999999999874 256666555433100 0100
Q ss_pred -----cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEcc
Q 023457 179 -----VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHA 252 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~ 252 (282)
...+||+|+.-.+ + ....+.+++.|.+ +. +++++.+... +...=+..+..+|+++.+.-
T Consensus 280 ~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~-------~ivyvSC~p~---tlarDl~~L~~gY~l~~v~~ 343 (362)
T PRK05031 280 KGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YE-------RILYISCNPE---TLCENLETLSQTHKVERFAL 343 (362)
T ss_pred ccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cC-------CEEEEEeCHH---HHHHHHHHHcCCcEEEEEEE
Confidence 0125899998444 5 4456666666654 44 6677766432 22221222224899987763
No 142
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.74 E-value=2.5e-07 Score=83.65 Aligned_cols=91 Identities=21% Similarity=0.144 Sum_probs=64.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++.+|||||||+|..+..+++..+ ..|+++|. +.+++.+++++..++. .++.+...|... ......
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~-----~~~~~~ 148 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYY-----GVPEFA 148 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhh-----cccccC
Confidence 478999999999999999986654 37999999 9999999999988763 245544433222 111125
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||+|+++..+ ..+...+.+.|++|
T Consensus 149 ~fD~Ii~~~g~------~~ip~~~~~~Lkpg 173 (322)
T PRK13943 149 PYDVIFVTVGV------DEVPETWFTQLKEG 173 (322)
T ss_pred CccEEEECCch------HHhHHHHHHhcCCC
Confidence 79999986433 22344566788888
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.72 E-value=1.8e-07 Score=88.19 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=81.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+|||+|..++.+|. .+.+|+++|+ +.+++.+++|+..|+. .++.+...|+.+.. ..+......|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~-~~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l-~~~~~~~~~~ 363 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVL-PKQPWAGQIP 363 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHH-hCCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHH-HHHHhcCCCC
Confidence 357999999999999999985 4579999999 9999999999998874 25666655443210 0111113469
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~ve~v~ 251 (282)
|+|++..+ + ......+++.+.+ ++++ +++++++. ..+...-+..+ ..+|.++.+.
T Consensus 364 D~vi~dPP-r-~G~~~~~l~~l~~-l~~~-------~ivyvsc~---p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 364 DVLLLDPP-R-KGCAAEVLRTIIE-LKPE-------RIVYVSCN---PATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CEEEECcC-C-CCCCHHHHHHHHh-cCCC-------EEEEEcCC---HHHHHHHHHHHHHCCeeEEEEE
Confidence 99998544 2 2334666666654 4554 55665543 23333333333 4578887665
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.70 E-value=5.6e-07 Score=82.67 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=79.4
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--hc----
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--VV---- 179 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--~~---- 179 (282)
.+|||||||+|..++.++.. ..+|+++|. +.+++.+++|+..|+. .++.+...|..+....... ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999988744 579999999 9999999999999874 2466665554331100000 00
Q ss_pred -----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 180 -----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 180 -----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
...||+|+.-.+ .....+.+++.+.+ ++ +++++.+.......+-. .+..+|+++.+.
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~-------~ivYvsC~p~tlaRDl~---~L~~~Y~l~~v~ 333 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YE-------RILYISCNPETLKANLE---QLSETHRVERFA 333 (353)
T ss_pred ccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CC-------cEEEEEcCHHHHHHHHH---HHhcCcEEEEEE
Confidence 124899998554 34556666666644 44 67777765333322222 222458888776
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.70 E-value=2.4e-07 Score=78.84 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEE-EEeCCCCccchhh-c
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAP-LRWGEAEANDVAV-V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~-ld~~~~~~~~~~~-~ 179 (282)
..++|||||.++|.-++.+|..++ ++++.+|+ ++..+.+++|++..+. .+++.+.. +|+.+ .+.. .
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~~~~~gdal~----~l~~~~ 129 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIELLLGGDALD----VLSRLL 129 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEEecCcHHH----HHHhcc
Confidence 478999999999999999997766 68999999 9999999999999885 44555555 34443 2332 3
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+||.- .....++..+..+.++|+||
T Consensus 130 ~~~fDliFID---adK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 130 DGSFDLVFID---ADKADYPEYLERALPLLRPG 159 (219)
T ss_pred CCCccEEEEe---CChhhCHHHHHHHHHHhCCC
Confidence 5799999982 23457889999999999998
No 146
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.67 E-value=1.2e-07 Score=80.57 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+|.+|||||||+|..+-.++...+ ..|+++|. +.+.+.+++|+...+. .++.+..-|-.. ..+ ..
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~----g~~-~~ 139 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSE----GWP-EE 139 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGG----TTG-GG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhh----ccc-cC
Confidence 3588999999999999999986665 37999999 9999999999998764 356666543222 111 14
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+||.|+..-.+. ..... +...|++| |++++..
T Consensus 140 apfD~I~v~~a~~--~ip~~----l~~qL~~g------GrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVP--EIPEA----LLEQLKPG------GRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBS--S--HH----HHHTEEEE------EEEEEEE
T ss_pred CCcCEEEEeeccc--hHHHH----HHHhcCCC------cEEEEEE
Confidence 5899999976663 22333 44567888 5655544
No 147
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.67 E-value=2.5e-07 Score=85.19 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=74.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+..+||||||+|...+.+|...+ ..|+|+|+ +.++..+.+++..+++ .++.+...|..... . ....+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll-~--~~~~~ 191 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLL-E--LLPSN 191 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhh-h--hCCCC
Confidence 4567999999999999999997764 69999999 9999999999988763 35666654433210 0 11256
Q ss_pred CccEEEEcCccCCCCC------HHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHL------FDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~------~~~ll~~l~~ll~~g 212 (282)
.+|.|+++-+.-+... .+.+++.+.++|++|
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 8999998744433221 268999999999998
No 148
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=1.6e-06 Score=74.43 Aligned_cols=139 Identities=11% Similarity=0.019 Sum_probs=89.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc------ccccccCCCcEEEEEEEeCCCCccchh
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN------AGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n------~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
++.+||..|||.|.-.+.+| ..|.+|+++|+ +.+++.+.+..... +.........+.+.+.|+-+.... .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~--~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI--A 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--c
Confidence 46799999999999999998 55789999999 88888765421100 000001134566666666552110 0
Q ss_pred hcCCCccEEEEcCccC--CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc---c----cHHHHHHHHhhcCceE
Q 023457 178 VVGREFDVILASDVVY--HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW---K----KDSVFFKKAKKLFDVE 248 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~---~----~~~~f~~~~~~~f~ve 248 (282)
...+.||+|+-.-++. .++.....++.+.++|+|| |.++++....... + +...........|+++
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg------g~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN------TQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC------cEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 1135799988644443 4566788999999999998 5666655432111 1 1445555666788888
Q ss_pred EEcc
Q 023457 249 TIHA 252 (282)
Q Consensus 249 ~v~~ 252 (282)
.+..
T Consensus 194 ~l~~ 197 (226)
T PRK13256 194 LIDS 197 (226)
T ss_pred Eeee
Confidence 8774
No 149
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.67 E-value=5e-07 Score=78.55 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+|.+|||-|.|+|.++..+++..+ ++|+..|. ++..+.+++|+..+++ ..++.+..-|....... ...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~--~~~ 110 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFD--EEL 110 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--S--TT-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceeccccc--ccc
Confidence 35699999999999999999997765 79999999 9999999999999885 55788887776531110 112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHH-hcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFL-NSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LF 245 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll-~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f 245 (282)
...+|.|+. |+ +.....+..+.+.| ++| |.+++. ....+..+.....+++ +|
T Consensus 111 ~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~g------G~i~~f---sP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 111 ESDFDAVFL-DL----PDPWEAIPHAKRALKKPG------GRICCF---SPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEE------EEEEEE---ESSHHHHHHHHHHHHHTTE
T ss_pred cCcccEEEE-eC----CCHHHHHHHHHHHHhcCC------ceEEEE---CCCHHHHHHHHHHHHHCCC
Confidence 467999988 33 56777888899999 777 454444 3455555666666654 67
No 150
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.66 E-value=2e-07 Score=79.02 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=73.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
+.++||||||++|.-++.+|...+ ++|+.+|. ++..+.+++++...+. .+++++...+..+.. ..+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l-~~l~~~~~ 118 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVL-PELANDGE 118 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHH-HHHHHTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhH-HHHHhccC
Confidence 467999999999999999997654 79999999 9999999999998875 457777764433200 011111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+|+.- . ....+...+..+.++|++|
T Consensus 119 ~~~fD~VFiD-a--~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 119 EGQFDFVFID-A--DKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp TTSEEEEEEE-S--TGGGHHHHHHHHHHHEEEE
T ss_pred CCceeEEEEc-c--cccchhhHHHHHhhhccCC
Confidence 2479999983 2 3457888888899999997
No 151
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.66 E-value=3.3e-07 Score=78.92 Aligned_cols=109 Identities=20% Similarity=0.135 Sum_probs=71.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHH-HHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTN-LQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~-~~~n~~~n 150 (282)
.+++++..|...+.... ...++++|||+|||||.++..++..++.+|+++|. +.++.. ++.+..-
T Consensus 55 ~vsr~~~kL~~~l~~~~------------~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v- 121 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFN------------IDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERV- 121 (228)
T ss_pred hhhhhHHHHHHHHHhcC------------CCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCe-
Confidence 57899999999997754 23568899999999999999998765679999999 766654 3332110
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.. .....+..++|.+.. .....+|+++++-. .++..+..+++++
T Consensus 122 ---~~--~~~~ni~~~~~~~~~-----~d~~~~DvsfiS~~--------~~l~~i~~~l~~~ 165 (228)
T TIGR00478 122 ---KV--LERTNIRYVTPADIF-----PDFATFDVSFISLI--------SILPELDLLLNPN 165 (228)
T ss_pred ---eE--eecCCcccCCHhHcC-----CCceeeeEEEeehH--------hHHHHHHHHhCcC
Confidence 00 011122234444421 11236888887533 3577888888874
No 152
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.66 E-value=4.4e-07 Score=77.76 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH-HHHhcccc-
Q 023457 77 AATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF-NVDANAGL- 153 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~-n~~~n~~~- 153 (282)
....|.+|+.... ..++.+||..|||.|.-.+.+|. .|.+|+++|+ +.+++.+.+ +.......
T Consensus 22 ~~p~L~~~~~~l~-------------~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~ 87 (218)
T PF05724_consen 22 PNPALVEYLDSLA-------------LKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTS 87 (218)
T ss_dssp STHHHHHHHHHHT-------------TSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTT
T ss_pred CCHHHHHHHHhcC-------------CCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCccc
Confidence 3677888887632 23467999999999999999984 5789999999 888887632 22111100
Q ss_pred c----ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc--CCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 154 I----SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV--YHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 154 ~----~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l--y~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
. .....++.+..-|+-..... ..++||+|+=.-++ -.++......+.+.++|+|+ |..++++..
T Consensus 88 ~~~~~~~~~~~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~------g~~lLi~l~ 157 (218)
T PF05724_consen 88 VGGFKRYQAGRITIYCGDFFELPPE----DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG------GRGLLITLE 157 (218)
T ss_dssp CTTEEEETTSSEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE------EEEEEEEEE
T ss_pred ccceeeecCCceEEEEcccccCChh----hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC------CcEEEEEEE
Confidence 0 01234566666555442111 12479999964443 35678899999999999998 563333322
Q ss_pred -e-cCc--c----cHHHHHHHHhhcCceEEEcccCCCC---------CcccceEEEEEeee
Q 023457 228 -L-RRW--K----KDSVFFKKAKKLFDVETIHADLPCN---------GARVGVVVYRMTGK 271 (282)
Q Consensus 228 -~-~~~--~----~~~~f~~~~~~~f~ve~v~~~~~~~---------~~~~~~~v~~~~~~ 271 (282)
. ... + ......+.+..+|+++.+....... .....-.+|+++||
T Consensus 158 ~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 158 YPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp S-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred cCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 1 111 1 1456666667889988776442221 12233478888875
No 153
>PLN02476 O-methyltransferase
Probab=98.65 E-value=3.7e-07 Score=80.63 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV- 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~- 179 (282)
.+.++|||||+|+|..++.+|... .++|+.+|. ++..+.+++|++.++. .+++.+...+..+ .++..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e----~L~~l~ 187 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAE----SLKSMI 187 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHH----HHHHHH
Confidence 457899999999999999998655 368999999 9999999999999885 3466666533222 12211
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+||+|+.- . ....+...++.+.++|++|
T Consensus 188 ~~~~~~~FD~VFID-a--~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 188 QNGEGSSYDFAFVD-A--DKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred hcccCCCCCEEEEC-C--CHHHHHHHHHHHHHhcCCC
Confidence 3589999983 2 2456788899999999998
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.5e-07 Score=76.56 Aligned_cols=99 Identities=24% Similarity=0.285 Sum_probs=70.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR- 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~- 181 (282)
..|.++|||-||+|.+|+.++.+++..++++|. ..++..+++|++.-+. ..++.+..-|-.. -+.....
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~----~L~~~~~~ 112 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALR----ALKQLGTR 112 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHH----HHHhcCCC
Confidence 569999999999999999999888899999999 9999999999987653 2344444322211 1122223
Q ss_pred -CccEEEEcCccCCCCCHHHHHHHHH----HHHhcC
Q 023457 182 -EFDVILASDVVYHDHLFDPLLVTLR----LFLNSG 212 (282)
Q Consensus 182 -~fD~Ii~sd~ly~~~~~~~ll~~l~----~ll~~g 212 (282)
.||+|+. |+-|+....+..+..+. .+|+++
T Consensus 113 ~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~ 147 (187)
T COG0742 113 EPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPG 147 (187)
T ss_pred CcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCC
Confidence 4999998 77777666643333333 457776
No 155
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.61 E-value=9.8e-07 Score=81.44 Aligned_cols=134 Identities=19% Similarity=0.101 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++||++-|=||..|+.+|..++++||.+|. ..+++.+++|++.|+.. ..+..+.+.|.-+. .........+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~-l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKW-LRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHH-HHHHHhcCCcc
Confidence 49999999999999999998555559999999 89999999999999963 22333333221110 00111124589
Q ss_pred cEEEEcCccCCC---------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-----hcCceEE
Q 023457 184 DVILASDVVYHD---------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-----KLFDVET 249 (282)
Q Consensus 184 D~Ii~sd~ly~~---------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-----~~f~ve~ 249 (282)
|+||.-++-|.. .++..++..+.++|+|| |.+++..++ +. -....|.+.+. .+..++.
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg------G~l~~~s~~-~~-~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG------GTLVTSSCS-RH-FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC------CEEEEEecC-Cc-cCHHHHHHHHHHHHHhcCCcEEE
Confidence 999997666532 35778889999999998 444443332 32 23455555443 2445555
Q ss_pred Ec
Q 023457 250 IH 251 (282)
Q Consensus 250 v~ 251 (282)
+.
T Consensus 364 ~~ 365 (393)
T COG1092 364 IE 365 (393)
T ss_pred ee
Confidence 53
No 156
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.59 E-value=7.3e-07 Score=78.96 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+++||+||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ...++.+.. .+. ...+.....+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--~~~~v~i~~---~D~-~~~l~~~~~~y 146 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--DDPRVDLQI---DDG-FKFLADTENTF 146 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--cCCceEEEE---Cch-HHHHHhCCCCc
Confidence 5599999999999988887554 368999999 999999998875432111 123444443 221 01112224689
Q ss_pred cEEEEcCc--cCCCCC--HHHHHHHHHHHHhcC
Q 023457 184 DVILASDV--VYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~--ly~~~~--~~~ll~~l~~ll~~g 212 (282)
|+|++... ...... ...+++.+.++|+||
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 99998432 211112 467889999999998
No 157
>PRK00811 spermidine synthase; Provisional
Probab=98.58 E-value=7.8e-07 Score=79.30 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+++||+||||+|..+..+++.. ..+|+++|+ +.+++.+++++....... ....++.+..-|... -+.....+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~----~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIK----FVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHH----HHhhCCCc
Confidence 46799999999999999887553 369999999 999999999875422100 013455555433222 12222468
Q ss_pred ccEEEEc--CccCCCC--CHHHHHHHHHHHHhcC
Q 023457 183 FDVILAS--DVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~s--d~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
||+|++. +...... ....+++.+++.|+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9999983 2221111 1367788999999998
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=1e-06 Score=75.06 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCC---------CcEEEE-------
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRG---------GSVHVA------- 164 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~---------~~v~~~------- 164 (282)
.+.++.+|||||-+|.+++.+|+..+ ..|+++|+ +..+..|++++..-.-...... ....+.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 46788999999999999999998876 57999999 9999999998874321100000 000000
Q ss_pred --EEE-----eCCCC------ccchhhcCCCccEEEEcCccC------CCCCHHHHHHHHHHHHhcC
Q 023457 165 --PLR-----WGEAE------ANDVAVVGREFDVILASDVVY------HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 165 --~ld-----~~~~~------~~~~~~~~~~fD~Ii~sd~ly------~~~~~~~ll~~l~~ll~~g 212 (282)
..+ |.... ..-+......||+|+|-.+.- +.+-+..+++.|.++|.||
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 000 00000 000111256899999965532 3456889999999999998
No 159
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.55 E-value=3.8e-07 Score=80.96 Aligned_cols=124 Identities=18% Similarity=0.087 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|++||++-|=||..|+.++..++.+|+.+|. ..+++.+++|+..|+.. ..++.+...|.-+. ...+. ...+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~-l~~~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKF-LKRLK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHH-HHHHH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHH-HHHHh-cCCCC
Confidence 38899999999999999988555568999999 89999999999999963 34566665443320 00111 24689
Q ss_pred cEEEEcCccCCC------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHD------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~ 242 (282)
|+||+-.+-|.. .++..++..+.+++++| +.++++...... ....|.+.+.
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g-------G~l~~~scs~~i-~~~~l~~~~~ 253 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG-------GLLLTCSCSHHI-SPDFLLEAVA 253 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE-------EEEEEEE--TTS--HHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CEEEEEcCCccc-CHHHHHHHHH
Confidence 999997665532 24677888888999997 545555443333 3345555443
No 160
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.51 E-value=1.6e-06 Score=72.86 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=79.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...-|||||||+|+.+-.+. .-+-..+++|+ +.||+.+...--. + .+...|.+. .++...++|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e-g----------dlil~DMG~----GlpfrpGtF 113 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE-G----------DLILCDMGE----GLPFRPGTF 113 (270)
T ss_pred CCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh-c----------CeeeeecCC----CCCCCCCcc
Confidence 45679999999999998885 44578899999 9999998752111 1 234446665 345557899
Q ss_pred cEEEEcCccCC---------CC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHH-hhcCce
Q 023457 184 DVILASDVVYH---------DH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKA-KKLFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~---------~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~-~~~f~v 247 (282)
|-+|+...+.+ .+ -+-.++.+|..+++++ ++.++-.+. .+....+.....+ ..||.=
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg------~raV~QfYp-en~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG------ARAVLQFYP-ENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC------ceeEEEecc-cchHHHHHHHHHHHhhccCC
Confidence 99987544432 11 1445788899999998 576665543 4444444444444 357743
No 161
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.7e-07 Score=73.63 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=61.0
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.+..|+.++|||||+|.+++.++...+..|+++|+ +++++..++|.+.-.. ++.+.+-++.+ +....
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------qidlLqcdild-----le~~~ 112 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------QIDLLQCDILD-----LELKG 112 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------hhheeeeeccc-----hhccC
Confidence 35789999999999999998887545579999999 9999999999987543 23444444443 22224
Q ss_pred CCccEEEEcCccC
Q 023457 181 REFDVILASDVVY 193 (282)
Q Consensus 181 ~~fD~Ii~sd~ly 193 (282)
+.||..+.+..+-
T Consensus 113 g~fDtaviNppFG 125 (185)
T KOG3420|consen 113 GIFDTAVINPPFG 125 (185)
T ss_pred CeEeeEEecCCCC
Confidence 7899999988875
No 162
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=3.3e-07 Score=77.97 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred cEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|||+|||.|-....+.+..+ -.|.+.|. +.+++.++++...+. .++.....|...... .-+...+.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~-~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSL-KEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhc-cCCCCcCcc
Confidence 899999999999888864443 37999999 999999999877654 234444444443211 112235789
Q ss_pred cEEEEcCccC--CCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVY--HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g 212 (282)
|+|.+.-++- +++.+...+..+.++++||
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 9999877765 4667899999999999998
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.46 E-value=7.3e-07 Score=84.14 Aligned_cols=97 Identities=26% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+++.||++|||+|.++..+++++ +.+|++++- +.+...++..+..|+ +.++|++..-|..+...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-----w~~~V~vi~~d~r~v~l----- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-----WGDKVTVIHGDMREVEL----- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-----TTTTEEEEES-TTTSCH-----
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-----CCCeEEEEeCcccCCCC-----
Confidence 47899999999999998887554 369999999 888888888778887 47789998866655221
Q ss_pred cCCCccEEEEc--CccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILAS--DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~s--d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+.|+||+- ..+-..+.....+....++|+|+
T Consensus 256 -pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 256 -PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp -SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred -CCceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 3589999973 22223446777888889999987
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.46 E-value=2.2e-06 Score=74.67 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-- 179 (282)
+.++|||||+++|.-++.+|...+ ++|+.+|. ++..+.++.++...+. .+++.+...+..+ .++..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e----~L~~l~~ 149 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALP----VLDQMIE 149 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHH----HHHHHHh
Confidence 467999999999999999986653 69999999 9999999999998775 4567666544322 22221
Q ss_pred ----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 ----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||+|+.- . +...+...+..+.+++++|
T Consensus 150 ~~~~~~~fD~iFiD-a--dK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 150 DGKYHGTFDFIFVD-A--DKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred ccccCCcccEEEec-C--CHHHhHHHHHHHHHhcCCC
Confidence 2589999982 2 2456778888888999998
No 165
>PRK04148 hypothetical protein; Provisional
Probab=98.44 E-value=1.3e-06 Score=68.59 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccC
Q 023457 80 TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLR 157 (282)
Q Consensus 80 ~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~ 157 (282)
.+++||..+.. ..++++|||||||+|. ++..++ ..+..|+++|+ +.+++.++.+.
T Consensus 3 ~i~~~l~~~~~------------~~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~---------- 59 (134)
T PRK04148 3 TIAEFIAENYE------------KGKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG---------- 59 (134)
T ss_pred HHHHHHHHhcc------------cccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC----------
Confidence 36777766542 2346799999999996 888887 56799999999 88877776531
Q ss_pred CCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhc
Q 023457 158 GGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNS 211 (282)
Q Consensus 158 ~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~ 211 (282)
+.+..-|+.+.+.. .-..+|+|.+.- -...+...+.++.+.
T Consensus 60 ---~~~v~dDlf~p~~~----~y~~a~liysir------pp~el~~~~~~la~~ 100 (134)
T PRK04148 60 ---LNAFVDDLFNPNLE----IYKNAKLIYSIR------PPRDLQPFILELAKK 100 (134)
T ss_pred ---CeEEECcCCCCCHH----HHhcCCEEEEeC------CCHHHHHHHHHHHHH
Confidence 34455555542211 124577777742 334444444444443
No 166
>PRK01581 speE spermidine synthase; Validated
Probab=98.44 E-value=3.7e-06 Score=76.65 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH---hcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD---ANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~---~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++||+||||+|.....+++..+ .+|+++|+ +++++.++..-. .|... ....++.+..-|-.. -+...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--~~DpRV~vvi~Da~~----fL~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--FFDNRVNVHVCDAKE----FLSSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--CCCCceEEEECcHHH----HHHhc
Confidence 356999999999998877765433 69999999 999999986211 11110 013456555433222 12223
Q ss_pred CCCccEEEEcCccCCC-----CC-HHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHD-----HL-FDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~-----~~-~~~ll~~l~~ll~~g 212 (282)
..+||+||+. +.... .. -..+++.+++.|+||
T Consensus 224 ~~~YDVIIvD-l~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 224 SSLYDVIIID-FPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred CCCccEEEEc-CCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 5689999984 22110 11 256889999999998
No 167
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.43 E-value=1.8e-06 Score=80.03 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.+|||++||+|..++.+|...+ .+|+++|+ +.+++.+++|++.|+.. .+.+...|... -+.. ...|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~------~~~v~~~Da~~----~l~~-~~~f 126 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE------NEKVFNKDANA----LLHE-ERKF 126 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------ceEEEhhhHHH----HHhh-cCCC
Confidence 45899999999999999986654 48999999 99999999999999852 23344333221 1111 3579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+. |+. .....++....+.++++
T Consensus 127 D~V~l-DP~---Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 127 DVVDI-DPF---GSPAPFLDSAIRSVKRG 151 (382)
T ss_pred CEEEE-CCC---CCcHHHHHHHHHHhcCC
Confidence 99999 553 44567777755667776
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.40 E-value=1.3e-06 Score=77.40 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++... .+|+++|+ +.+++.+++++.. .++.+...|+.+.. ++ .-.+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~---~~--~~~~ 106 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVD---LS--ELQP 106 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCC---HH--HcCc
Confidence 47799999999999999998664 59999999 9999999876632 35666766665521 11 1115
Q ss_pred cEEEEcCcc
Q 023457 184 DVILASDVV 192 (282)
Q Consensus 184 D~Ii~sd~l 192 (282)
+.|+++.+.
T Consensus 107 ~~vv~NlPY 115 (272)
T PRK00274 107 LKVVANLPY 115 (272)
T ss_pred ceEEEeCCc
Confidence 888888664
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.40 E-value=1.4e-06 Score=73.08 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=71.6
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch---hhcCCC
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV---AVVGRE 182 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~---~~~~~~ 182 (282)
+|||||||||-.+..+|..++ -+-.-+|+ +..+..++..+...+.. .-.....+|......... ......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecCCCCCccccccccCCCC
Confidence 699999999999999998876 46678999 77778888877765532 112233455444211110 112468
Q ss_pred ccEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
||.|+++.++|- ....+.+++...++|++|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 999999999985 346789999999999998
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=3.7e-06 Score=81.14 Aligned_cols=104 Identities=20% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc-cCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS-LRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~-~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+.++||+||||+|.....+++... .+|+++|+ +++++.+++|...+..... ....++++..-|-.+ .+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~----~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN----WLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----HHHhCCC
Confidence 467999999999999988875544 69999999 9999999985322111000 012456555433221 1222346
Q ss_pred CccEEEEcCccCCCC-----CHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDH-----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g 212 (282)
+||+|++.-.-.... ....+++.++++|+|+
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 899999952211111 1246888999999998
No 171
>PLN02366 spermidine synthase
Probab=98.38 E-value=1.2e-05 Score=72.38 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~ 181 (282)
..++||+||||.|.+...+++... .+|+++|+ +.+++.+++......... ...++++..-|-.. -+... ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~--~dpRv~vi~~Da~~----~l~~~~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF--DDPRVNLHIGDGVE----FLKNAPEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc--CCCceEEEEChHHH----HHhhccCC
Confidence 467999999999999988875533 68999999 899999998775421111 23466666533211 11111 35
Q ss_pred CccEEEEcCccCC--CC---CHHHHHHHHHHHHhcCCCCCCCceEEEEEEe-ecCcccHHHHHHHHhhcC
Q 023457 182 EFDVILASDVVYH--DH---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH-LRRWKKDSVFFKKAKKLF 245 (282)
Q Consensus 182 ~fD~Ii~sd~ly~--~~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~-~~~~~~~~~f~~~~~~~f 245 (282)
+||+||+ |..-. .. ....+++.+++.|+|+ |.++..+.. .........+...++.-|
T Consensus 165 ~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pg------Gvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 165 TYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPG------GVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred CCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCC------cEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 7999998 33211 11 1356889999999998 443332211 112223455666677777
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=3e-06 Score=74.49 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.++.++.. ..++.+...|+.+. . ...
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~-----~--~~~ 91 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKV-----D--LPE 91 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccC-----C--chh
Confidence 35789999999999999999865 679999999 9999999887753 12566666555431 1 135
Q ss_pred ccEEEEcCccC
Q 023457 183 FDVILASDVVY 193 (282)
Q Consensus 183 fD~Ii~sd~ly 193 (282)
||.|+++.+.+
T Consensus 92 ~d~Vv~NlPy~ 102 (258)
T PRK14896 92 FNKVVSNLPYQ 102 (258)
T ss_pred ceEEEEcCCcc
Confidence 79999987754
No 173
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.37 E-value=4.2e-06 Score=72.42 Aligned_cols=88 Identities=25% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
....++||||+|-|-++..++ ..-.+|++|+. +.|...+++ .+ --.+...+|.+ .+.+
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~----kg--------~~vl~~~~w~~--------~~~~ 151 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSK----KG--------FTVLDIDDWQQ--------TDFK 151 (265)
T ss_pred ccCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHh----CC--------CeEEehhhhhc--------cCCc
Confidence 456789999999999999997 44588999999 777665554 22 11223344554 1357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.|-.++-.-..+..+++.|++.|+|+
T Consensus 152 fDvIscLNvLDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 152 FDVISCLNVLDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred eEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence 999999999988888999999999999998
No 174
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.34 E-value=3.2e-06 Score=78.05 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+.+|||+.||+|..|+.+++.. ...|++.|+ +.+++.+++|++.|+. .++.+...|... -+......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~----~l~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAAN----VLRYRNRK 114 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHH----HHHHhCCC
Confidence 4589999999999999999763 479999999 9999999999999874 234444433322 11222357
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.. |+ |. ....++..+.+.++++
T Consensus 115 fDvIdl-DP-fG--s~~~fld~al~~~~~~ 140 (374)
T TIGR00308 115 FHVIDI-DP-FG--TPAPFVDSAIQASAER 140 (374)
T ss_pred CCEEEe-CC-CC--CcHHHHHHHHHhcccC
Confidence 999998 77 43 3356777777778776
No 175
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.33 E-value=2e-06 Score=72.60 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+|+|+.||.|..++.+|+. .++.|++.|+ |.+++.+++|+..|+. .+++.+...|... +.. ..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~-----~~~-~~ 168 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDARE-----FLP-EG 168 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG---------TT
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHH-----hcC-cc
Confidence 35889999999999999999863 3478999999 9999999999999985 4567777766544 221 57
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.||.|+++.+- ....++..+..+++++
T Consensus 169 ~~drvim~lp~----~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 169 KFDRVIMNLPE----SSLEFLDAALSLLKEG 195 (200)
T ss_dssp -EEEEEE--TS----SGGGGHHHHHHHEEEE
T ss_pred ccCEEEECChH----HHHHHHHHHHHHhcCC
Confidence 89999997543 3335666777788776
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.1e-05 Score=70.99 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
-.+|..|||=-||||..-+.+. ..|++|+++|+ ..|+.-++.|+..-+. .+......+| ...++....
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~D-----a~~lpl~~~ 263 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLD-----ATNLPLRDN 263 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecc-----cccCCCCCC
Confidence 4578899999999999999986 77899999999 8999999999997652 1111111112 223332234
Q ss_pred CccEEEEcCccCCCC----------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 182 EFDVILASDVVYHDH----------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~----------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
.+|-|++ |+-|... .+..+++++.+.|++| |.++|.+. ...+.+..+.+|++....
T Consensus 264 ~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g------G~~vf~~p-------~~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 264 SVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPG------GRIVFAAP-------RDPRHELEELGFKVLGRF 329 (347)
T ss_pred ccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcC------cEEEEecC-------CcchhhHhhcCceEEEEE
Confidence 6998887 7777432 3778899999999998 56666554 122234445689887655
Q ss_pred ccC
Q 023457 252 ADL 254 (282)
Q Consensus 252 ~~~ 254 (282)
...
T Consensus 330 ~~~ 332 (347)
T COG1041 330 TMR 332 (347)
T ss_pred EEe
Confidence 443
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.30 E-value=3.7e-06 Score=75.24 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=57.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||||+|.++..++.. +.+|+++|+ +.+++.+++++..++. ..++.+..-|+... + ...|
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~---~----~~~~ 102 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKT---E----FPYF 102 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhh---c----cccc
Confidence 5779999999999999998754 678999999 9999999999876542 24566666554431 1 2468
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
|+|+++-+.|
T Consensus 103 d~VvaNlPY~ 112 (294)
T PTZ00338 103 DVCVANVPYQ 112 (294)
T ss_pred CEEEecCCcc
Confidence 9888765544
No 178
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.26 E-value=3e-06 Score=73.64 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..++|||||+|+|..++.++++.+ .+++..|+|.+++.+++ .+++.+...|+-+ .+ +. +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------------~~rv~~~~gd~f~----~~---P~-~ 159 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------------ADRVEFVPGDFFD----PL---PV-A 159 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------------TTTEEEEES-TTT----CC---SS-E
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------------ccccccccccHHh----hh---cc-c
Confidence 346899999999999999987776 69999999999888877 3478888877654 22 23 9
Q ss_pred cEEEEcCccCCCC--CHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDH--LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g 212 (282)
|+|+.+.++|+.. ....+++.+...++||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999998644 5678999999999975
No 179
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.15 E-value=6.1e-05 Score=69.25 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
-+.....|.+++...... .++ +||||-||+|..|+.+| ....+|+++|. +.+++.+++|+..|+.
T Consensus 178 N~~~~~~l~~~~~~~l~~------------~~~-~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDL------------SKG-DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-------------TT-EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHhhc------------CCC-cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 445556666666554421 223 79999999999999998 55689999999 9999999999999985
Q ss_pred ccccCCCcEEEEEEEeCCCCc-----cch------hhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceE
Q 023457 153 LISLRGGSVHVAPLRWGEAEA-----NDV------AVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~-----~~~------~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
.++.+...+-.+... ..+ ......+|+||. |+-.. ...+.+++.+. +.. ++
T Consensus 244 ------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR~-G~~~~~~~~~~---~~~-------~i 305 (352)
T PF05958_consen 244 ------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPRA-GLDEKVIELIK---KLK-------RI 305 (352)
T ss_dssp -------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----TT--SCHHHHHHHH---HSS-------EE
T ss_pred ------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCCC-CchHHHHHHHh---cCC-------eE
Confidence 356665543221100 000 011236898887 33221 12344555443 333 77
Q ss_pred EEEEEeecCcccHHHHHHHHhhcCceEEEc
Q 023457 222 NFVMAHLRRWKKDSVFFKKAKKLFDVETIH 251 (282)
Q Consensus 222 ~il~~~~~~~~~~~~f~~~~~~~f~ve~v~ 251 (282)
+++++... +..+=+..+.++|.++.+.
T Consensus 306 vYvSCnP~---tlaRDl~~L~~~y~~~~v~ 332 (352)
T PF05958_consen 306 VYVSCNPA---TLARDLKILKEGYKLEKVQ 332 (352)
T ss_dssp EEEES-HH---HHHHHHHHHHCCEEEEEEE
T ss_pred EEEECCHH---HHHHHHHHHhhcCEEEEEE
Confidence 88776533 3222223334689998765
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.15 E-value=0.00012 Score=64.17 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
++.+|||||||+|.++..++.. +..|+++|. +.+++.++.+... ..++.+...|+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALK 86 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhc
Confidence 4779999999999999999855 467999999 9999998877642 2355666555444
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=5.3e-05 Score=68.70 Aligned_cols=95 Identities=22% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..|.+|||+-||.|..++.+|+....+|+++|+ |.+++.+++|+.+|+. .+.+.....|-.. +......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~re-----v~~~~~~ 256 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDARE-----VAPELGV 256 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHH-----hhhcccc
Confidence 358999999999999999999776666999999 9999999999999995 4445555544332 2222267
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||-|+++.+- ....++....++++++
T Consensus 257 aDrIim~~p~----~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 257 ADRIIMGLPK----SAHEFLPLALELLKDG 282 (341)
T ss_pred CCEEEeCCCC----cchhhHHHHHHHhhcC
Confidence 9999997554 3345555666677766
No 182
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.12 E-value=0.00011 Score=71.24 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=90.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~ 174 (282)
...+|||.|||+|...+.++.... ..+++.|+ +.++..++.|+...+. ..+.+...++......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999988875552 47899999 9999999998876541 1122222222111000
Q ss_pred chhhcCCCccEEEEcCccCCCCC----------------------------------------------HHHHH-HHHHH
Q 023457 175 DVAVVGREFDVILASDVVYHDHL----------------------------------------------FDPLL-VTLRL 207 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~----------------------------------------------~~~ll-~~l~~ 207 (282)
......+.||+||++.+.-.... +..++ +...+
T Consensus 105 ~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~ 184 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLE 184 (524)
T ss_pred ccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHH
Confidence 00111357999999977643210 11122 45567
Q ss_pred HHhcCCCCCCCceEEEEEEeecCc-ccHHHHHHHHhhcCceEEEccc----CCCCCcccceEEEEEeee
Q 023457 208 FLNSGEPEPKKKKMNFVMAHLRRW-KKDSVFFKKAKKLFDVETIHAD----LPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 208 ll~~g~~~~~~g~~~il~~~~~~~-~~~~~f~~~~~~~f~ve~v~~~----~~~~~~~~~~~v~~~~~~ 271 (282)
+++++ |.+.++.+...-. .....|.+.+.+.+.+..+... ..+.+......++.+.+.
T Consensus 185 lL~~~------G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 185 IANKN------GYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred hcCCC------CEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEECC
Confidence 78887 7888877642221 2234555555555666655432 123334444566666654
No 183
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.12 E-value=8.9e-05 Score=62.35 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=76.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+..|-|+|||-+.++..+. ...+|...|+ +. ...|. .-|.. ..+..+...|
T Consensus 73 ~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-------------------n~~Vt--acdia-----~vPL~~~svD 124 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-------------------NPRVT--ACDIA-----NVPLEDESVD 124 (219)
T ss_dssp TS-EEEES-TT-HHHHH----S---EEEEESS-S-------------------STTEE--ES-TT-----S-S--TT-EE
T ss_pred CEEEEECCCchHHHHHhcc--cCceEEEeeccCC-------------------CCCEE--EecCc-----cCcCCCCcee
Confidence 5699999999999884432 2356999998 42 12222 22322 3344467899
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccce
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVGV 263 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~~ 263 (282)
++|.+-.+-. .++..++....|+|+++ +.+.++--..|......|.+.+.. ||++..-. ....-+
T Consensus 125 v~VfcLSLMG-Tn~~~fi~EA~RvLK~~-------G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d------~~n~~F 190 (219)
T PF05148_consen 125 VAVFCLSLMG-TNWPDFIREANRVLKPG-------GILKIAEVKSRFENVKQFIKALKKLGFKLKSKD------ESNKHF 190 (219)
T ss_dssp EEEEES---S-S-HHHHHHHHHHHEEEE-------EEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--------STTE
T ss_pred EEEEEhhhhC-CCcHHHHHHHHheeccC-------cEEEEEEecccCcCHHHHHHHHHHCCCeEEecc------cCCCeE
Confidence 9998766543 47889999999999998 666667666777778999998875 88877643 234567
Q ss_pred EEEEEeeecCC
Q 023457 264 VVYRMTGKAKS 274 (282)
Q Consensus 264 ~v~~~~~~~~~ 274 (282)
.+|.|.|....
T Consensus 191 ~~f~F~K~~~~ 201 (219)
T PF05148_consen 191 VLFEFKKIRKK 201 (219)
T ss_dssp EEEEEEE-SSS
T ss_pred EEEEEEEcCcc
Confidence 88888887643
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.2e-05 Score=71.29 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=83.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||+=||.|..|+.+| ....+|+++++ +++++.+++|++.|+. .++.+...+-....... .....|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~--~~~~~~ 363 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAW--WEGYKP 363 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhc--cccCCC
Confidence 46799999999999999998 55689999999 9999999999999985 24666654433211100 013578
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceEEEc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve~v~ 251 (282)
|+||.-.+= ...-+.+++.+.++-.+ +++++++ +..+..+-+..+. .++.++++.
T Consensus 364 d~VvvDPPR--~G~~~~~lk~l~~~~p~--------~IvYVSC---NP~TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 364 DVVVVDPPR--AGADREVLKQLAKLKPK--------RIVYVSC---NPATLARDLAILASTGYEIERVQ 419 (432)
T ss_pred CEEEECCCC--CCCCHHHHHHHHhcCCC--------cEEEEeC---CHHHHHHHHHHHHhCCeEEEEEE
Confidence 999984331 12334666666554432 5666665 4445555555444 577788776
No 185
>PLN02823 spermine synthase
Probab=98.10 E-value=7.6e-05 Score=68.00 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||.||+|.|.....+++.. ..+|+++|+ +.+++.+++....+.... ...++++..-|-.. -+.....+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~--~dprv~v~~~Da~~----~L~~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF--CDKRLELIINDARA----ELEKRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc--cCCceEEEEChhHH----HHhhCCCC
Confidence 46799999999999998877543 368999999 999999998876543211 13456555432211 12223568
Q ss_pred ccEEEEcCccCC----CC---CHHHHHH-HHHHHHhcC
Q 023457 183 FDVILASDVVYH----DH---LFDPLLV-TLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~----~~---~~~~ll~-~l~~ll~~g 212 (282)
||+|++ |+.-. +. .-..+++ .+++.|+++
T Consensus 177 yDvIi~-D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 177 FDVIIG-DLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred ccEEEe-cCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 999997 33210 01 1245676 889999998
No 186
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.09 E-value=0.00023 Score=64.32 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|+++|||||++|..+..+++. +.+|+++|...+-..+ .. ..+|....-+-... .+ ....+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~L----~~--------~~~V~h~~~d~fr~----~p-~~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQSL----MD--------TGQVEHLRADGFKF----RP-PRKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHhh----hC--------CCCEEEEeccCccc----CC-CCCCC
Confidence 57899999999999999999754 6799999984333333 21 33444444322111 11 14579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE---eecCcccHHHHHHHHh
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA---HLRRWKKDSVFFKKAK 242 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~---~~~~~~~~~~f~~~~~ 242 (282)
|+|++ |++ ..+..+.+.+..++..|- .+..|+.- .+.++.....+++.+.
T Consensus 272 DwvVc-Dmv---e~P~rva~lm~~Wl~~g~-----cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 272 DWLVC-DMV---EKPARVAELMAQWLVNGW-----CREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred CEEEE-ecc---cCHHHHHHHHHHHHhcCc-----ccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99888 776 345577777788887762 33334332 3466666666666544
No 187
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.08 E-value=2.3e-05 Score=69.75 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=50.2
Q ss_pred CCcEEEeCCCCC-HHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhc-ccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTG-LVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDAN-AGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG-~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n-~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
..++||||+|.. ...+..++..+-+++|||+ +..++.+++|++.| .+ ..++.+....=...-...+......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 568999999975 4466666666789999999 99999999999999 64 5677776532111001111122458
Q ss_pred ccEEEEcCccCCCC
Q 023457 183 FDVILASDVVYHDH 196 (282)
Q Consensus 183 fD~Ii~sd~ly~~~ 196 (282)
||+.+|+.++|...
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999999654
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.07 E-value=4.5e-05 Score=61.62 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=76.1
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+=|+|..||+-+.... ....|+-|||+|.|||..+-.+.+++ ...++++++ ++....+.+..
T Consensus 28 aI~PsSs~lA~~M~s~I------------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 28 AILPSSSILARKMASVI------------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred eecCCcHHHHHHHHhcc------------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 35677777888775543 23468899999999999999887554 268999999 88877776532
Q ss_pred cccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC--HHHHHHHHHHHHhcC
Q 023457 150 NAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL--FDPLLVTLRLFLNSG 212 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll~~g 212 (282)
..+.+.+.|-.+.+..--....+.||.||++-.+-..+. --.+++.+...+..|
T Consensus 94 ---------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 94 ---------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred ---------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 223333322222110011123568999999877665443 346777777778777
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.05 E-value=2.3e-05 Score=71.26 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=75.3
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.--|--+.+...|+..... ..++.+|||||||-|. +.-+. ......++++|+ ...++.+++....
T Consensus 41 fNNwvKs~LI~~~~~~~~~------------~~~~~~VLDl~CGkGGDL~Kw~-~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQ------------NRPGLTVLDLCCGKGGDLQKWQ-KAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCC------------TTTT-EEEEET-TTTTTHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhc------------cCCCCeEEEecCCCchhHHHHH-hcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4568888888888864332 1268899999999765 55444 455589999999 8899999887732
Q ss_pred cccccccCCCcEEEEE-EEeCCCCccchh----hcCCCccEEEEcCccCC----CCCHHHHHHHHHHHHhcC
Q 023457 150 NAGLISLRGGSVHVAP-LRWGEAEANDVA----VVGREFDVILASDVVYH----DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 150 n~~~~~~~~~~v~~~~-ld~~~~~~~~~~----~~~~~fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g 212 (282)
..........+..+.. ....+.....+. ....+||+|=+--.+|+ .+....+++++...|+||
T Consensus 108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 1110000011111211 122221111111 11258999999887774 345677999999999998
No 190
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.02 E-value=6e-05 Score=63.82 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+.||.|||.|.++-.+......+|..+|. +..++.+++.+.... .....+...- .+++.....+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~g-----LQ~f~P~~~~Y 123 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVG-----LQDFTPEEGKY 123 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES------GGG----TT-E
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC------CCcceEEecC-----HhhccCCCCcE
Confidence 45699999999999997765455589999999 999999987654421 1112222221 12222224689
Q ss_pred cEEEEcCccCCC--CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc-------------cHHHHHHHHhh-cCce
Q 023457 184 DVILASDVVYHD--HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK-------------KDSVFFKKAKK-LFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~~--~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~-------------~~~~f~~~~~~-~f~v 247 (282)
|+|++--|+-|- .++-.+++.++..|+|+ +++++=-.....+ +...|.+.+++ |+.+
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L~~~-------G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQALKPN-------GVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHEEEE-------EEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EE
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhCcCC-------cEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEE
Confidence 999998887654 45778999999999997 4444321111000 25666666654 7776
Q ss_pred EEEc--ccCCCCCcccceEEEEE
Q 023457 248 ETIH--ADLPCNGARVGVVVYRM 268 (282)
Q Consensus 248 e~v~--~~~~~~~~~~~~~v~~~ 268 (282)
-.-. ...|.+ =-.|.+|.+
T Consensus 197 v~~~~Q~~fP~~--L~pV~myaL 217 (218)
T PF05891_consen 197 VKEEKQKGFPKE--LYPVRMYAL 217 (218)
T ss_dssp EEEEE-TT--TT--S-EEEEEEE
T ss_pred EEeccccCCCcc--ceEEEEEEe
Confidence 4333 234443 234566655
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.00 E-value=0.00048 Score=65.53 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred ceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~ 148 (282)
...-++|+..+..|... ..+|.+|||++||.|.=+..+|..++ ..|++.|+ +.-+..+++|++
T Consensus 94 yvQd~sS~l~~~~L~~~--------------~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 94 YIQEASSMLPVAALFAD--------------DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred EEECHHHHHHHHHhccC--------------CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 34566777767666321 13578999999999999999987664 68999999 889999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchh-hcCCCccEEEE----c--CccCCCC----------------CHHHHHHHH
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVA-VVGREFDVILA----S--DVVYHDH----------------LFDPLLVTL 205 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~----s--d~ly~~~----------------~~~~ll~~l 205 (282)
+.+. .++.+...|-.. +. .....||.|+. | .++...+ ....++...
T Consensus 160 r~G~------~nv~v~~~D~~~-----~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A 228 (470)
T PRK11933 160 RCGV------SNVALTHFDGRV-----FGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESA 228 (470)
T ss_pred HcCC------CeEEEEeCchhh-----hhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 8663 234444432211 11 12357999994 2 2222211 125678888
Q ss_pred HHHHhcCCCCCCCceEEEEEEee
Q 023457 206 RLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 206 ~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
.++|+|| |.+++..++.
T Consensus 229 ~~~LkpG------G~LVYSTCT~ 245 (470)
T PRK11933 229 FHALKPG------GTLVYSTCTL 245 (470)
T ss_pred HHHcCCC------cEEEEECCCC
Confidence 8999998 6776665553
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=9.5e-05 Score=62.88 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC-
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE- 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~- 182 (282)
+++++|||+|.|.+|+.+|...+ .+|+.+|. ..=+..++.-...-++ .++.+..-.. +++.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~Ra-----E~~~~-~~~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRA-----EEFGQ-EKKQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhH-----hhccc-cccc
Confidence 68999999999999999985544 57999998 6555555554444332 2344443222 22221 123
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|.+--+ ..+..++..+..++++|
T Consensus 136 ~D~vtsRAv----a~L~~l~e~~~pllk~~ 161 (215)
T COG0357 136 YDVVTSRAV----ASLNVLLELCLPLLKVG 161 (215)
T ss_pred CcEEEeehc----cchHHHHHHHHHhcccC
Confidence 999998433 46788899999999997
No 193
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.94 E-value=2.4e-05 Score=63.66 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=53.0
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
.|+|+.||.|-.++.+|+ ...+|+++|+ +..++.++.|+..-+. .+++.+..-||.+... .+.. ...||+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~-~~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~-~~~~-~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR-TFDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLK-RLKS-NKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHH-TT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGG-GB-------SEE
T ss_pred EEEEeccCcCHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHh-hccc-cccccEE
Confidence 699999999999999984 4689999999 9999999999998774 4578888888876111 1110 1128999
Q ss_pred EEcCcc
Q 023457 187 LASDVV 192 (282)
Q Consensus 187 i~sd~l 192 (282)
+++.+.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998654
No 194
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.94 E-value=0.00025 Score=58.89 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CE---------EEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AK---------VTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE 172 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~---------V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~ 172 (282)
.++..|||--||+|.+-+.+|.... .. +++.|+ +.++..++.|+...+. ...+.+.+.|...
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~-- 99 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDARE-- 99 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG--
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhh--
Confidence 3577999999999999999885543 23 789999 9999999999988764 4456666655544
Q ss_pred ccchhhcCCCccEEEEcCccCCCC--------CHHHHHHHHHHHHhc
Q 023457 173 ANDVAVVGREFDVILASDVVYHDH--------LFDPLLVTLRLFLNS 211 (282)
Q Consensus 173 ~~~~~~~~~~fD~Ii~sd~ly~~~--------~~~~ll~~l~~ll~~ 211 (282)
++.....+|+||++.+.-... .+..+++.+.+++++
T Consensus 100 ---l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 100 ---LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp ---GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ---cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 333356899999976654321 234455555555554
No 195
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.90 E-value=0.00011 Score=61.86 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=67.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
...+||||||.|-..+.+|...+ ..++++|+ ...+..+.+.+...+ ..++.+...|.... -..-..++.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------l~Nv~~~~~da~~~--l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------LKNVRFLRGDAREL--LRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------TSSEEEEES-CTTH--HHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------ccceEEEEccHHHH--HhhcccCCch
Confidence 33899999999999999997765 68999999 888888777777665 34677766544331 0111124688
Q ss_pred cEEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 184 DVILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
|-|... |+..... .-+.++..+.++|++|
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 888875 4443222 3578999999999998
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.7e-05 Score=62.84 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccc----cCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLIS----LRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~----~~~~~v~~~~ld~~~~~~~~ 175 (282)
.+|.+.||+|+|+|.++-.++...+ ..++++|. +++++..++|+...-...+ ...+++.+...|-...
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g---- 156 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG---- 156 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc----
Confidence 4699999999999999988875554 34589999 9999999999986432110 0123444443332221
Q ss_pred hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 176 VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
.....+||.|.+. .....+.+.+...|+++ |++++-
T Consensus 157 -~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~g------Grllip 192 (237)
T KOG1661|consen 157 -YAEQAPYDAIHVG------AAASELPQELLDQLKPG------GRLLIP 192 (237)
T ss_pred -CCccCCcceEEEc------cCccccHHHHHHhhccC------CeEEEe
Confidence 1224689999985 22334445555677787 565553
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.86 E-value=0.00013 Score=60.73 Aligned_cols=89 Identities=29% Similarity=0.340 Sum_probs=63.4
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
+++|||+|.|.+|+.+|...+ .+|+.+|. ..=+..++.-+..-++ .++.+......+ ......||+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~------~~~~~~fd~ 118 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE------PEYRESFDV 118 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH------TTTTT-EEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc------cccCCCccE
Confidence 799999999999999997776 58999999 7656666655554443 245665533322 223578999
Q ss_pred EEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|++--+ ..+..++..+..+++++
T Consensus 119 v~aRAv----~~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 119 VTARAV----APLDKLLELARPLLKPG 141 (184)
T ss_dssp EEEESS----SSHHHHHHHHGGGEEEE
T ss_pred EEeehh----cCHHHHHHHHHHhcCCC
Confidence 998543 46888999999999987
No 198
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=8.9e-05 Score=69.65 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI 154 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~ 154 (282)
.++.+|-.++..+... ..++.++|+-||||..|+.+| +...+|+++++ +++++.|+.|+..|+..
T Consensus 366 ~~aevLys~i~e~~~l------------~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngis- 431 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGL------------PADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGIS- 431 (534)
T ss_pred HHHHHHHHHHHHHhCC------------CCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCcc-
Confidence 3667888899887744 346899999999999999998 56689999999 99999999999999853
Q ss_pred ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 155 SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 155 ~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
++.+....-.+.-...+...-..-++|...|.-. ......+++.++..-++. +++++++.
T Consensus 432 -----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~-------rlvyvSCn 491 (534)
T KOG2187|consen 432 -----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPR-------RLVYVSCN 491 (534)
T ss_pred -----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCcc-------ceEEEEcC
Confidence 3444432111100111111112345555555543 345667777777776665 66777654
No 199
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.83 E-value=0.00081 Score=57.86 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred cceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHH
Q 023457 71 SFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 71 g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+..+++.++.=+.|+.++. +..|++||=||= -=+.|+++|.. .+++|+.+|+ +.+++.+++...
T Consensus 23 ~~~T~eT~~~Ra~~~~~~g-------------dL~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~ 88 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERG-------------DLEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAE 88 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT--------------STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhcC-------------cccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 4468888888888887754 346999999994 35667777643 3589999999 999999999998
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
..+. .+.+...|..+.-+..+ .++||+++. |+.|-.+-+..++..-...|+.. |+..++....
T Consensus 89 ~~gl-------~i~~~~~DlR~~LP~~~---~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~------g~~gy~~~~~ 151 (243)
T PF01861_consen 89 EEGL-------PIEAVHYDLRDPLPEEL---RGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGE------GCAGYFGFTH 151 (243)
T ss_dssp HHT---------EEEE---TTS---TTT---SS-BSEEEE----SSHHHHHHHHHHHHHTB-ST------T-EEEEEE-T
T ss_pred HcCC-------ceEEEEecccccCCHHH---hcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCC------CceEEEEEec
Confidence 8774 37777777777433332 579998887 88888888888888888888754 4455555443
Q ss_pred cCcc--cHHHHHHHH-hhcCceEEEc
Q 023457 229 RRWK--KDSVFFKKA-KKLFDVETIH 251 (282)
Q Consensus 229 ~~~~--~~~~f~~~~-~~~f~ve~v~ 251 (282)
+... ....+.+.+ +.||.++.+-
T Consensus 152 ~~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 152 KEASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp TT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred CcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 3321 112222322 3578777654
No 200
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.82 E-value=9.6e-05 Score=62.67 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc---cCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS---LRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~---~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
++...+|||||.|-+-+.+|...+ .+.+++++ +...+.++........... .....+.+...|+.+ .......
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~--~~~~~~~ 119 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD--PDFVKDI 119 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT--HHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc--cHhHhhh
Confidence 477999999999999988886666 46999999 7765555443332111100 012344444444433 1111111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
-...|+|+++...|..+....+. .+..-+++|
T Consensus 120 ~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G 151 (205)
T PF08123_consen 120 WSDADVVFVNNTCFDPDLNLALA-ELLLELKPG 151 (205)
T ss_dssp GHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT
T ss_pred hcCCCEEEEeccccCHHHHHHHH-HHHhcCCCC
Confidence 24579999999988766555553 333345555
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=0.00017 Score=57.09 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred cEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 108 NILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
+|||+|||+|..++.++...+ .+|+++|. +.+.+.+++|+..|+. .++.+.+..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 589999999999999986654 38999999 9999999999998874 236666655554
No 202
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.004 Score=57.31 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=88.6
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHH
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..-.+|++.+..| ...+|.+|||+-++.|.=+..+|.... ..|++.|. +.-+..++.|+.
T Consensus 140 vQd~sS~l~a~~L----------------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 140 VQDEASQLPALVL----------------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred EcCHHHHHHHHHc----------------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH
Confidence 3445666666555 345688999999999988888876553 46799999 889999999999
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEE------cCccCCCC----------------CHHHHHHHHH
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILA------SDVVYHDH----------------LFDPLLVTLR 206 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~------sd~ly~~~----------------~~~~ll~~l~ 206 (282)
+-+.. ++.+...|-.. .........+||.|+. ..++...+ ....++....
T Consensus 204 RlG~~------nv~~~~~d~~~--~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~ 275 (355)
T COG0144 204 RLGVR------NVIVVNKDARR--LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAAL 275 (355)
T ss_pred HcCCC------ceEEEeccccc--ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 87742 23444433221 1111111235999995 12232111 2457888888
Q ss_pred HHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh
Q 023457 207 LFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 207 ~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~ 243 (282)
++++|| |.+++..+.....+.+......+++
T Consensus 276 ~~lk~G------G~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 276 KLLKPG------GVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred HhcCCC------CEEEEEccCCchhcCHHHHHHHHHh
Confidence 999998 7777766654444444333333433
No 203
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.72 E-value=0.00048 Score=62.07 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=88.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH--------hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI--------LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~--------~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~ 174 (282)
..+.+|+|-.||+|..-+.+... ...++++.|+ +.++..++.|+..++.. .....+...|.-. .
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~---~ 117 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLE---N 117 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTT---S
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----ccccccccccccc---c
Confidence 35778999999999998887653 2468999999 88999998888776542 1122233222211 1
Q ss_pred chhhcCCCccEEEEcCccCCC--C-------------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeec--Cc
Q 023457 175 DVAVVGREFDVILASDVVYHD--H-------------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLR--RW 231 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~--~-------------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~--~~ 231 (282)
........||+|+++.++-.. . ..-.++..+.+.|+++ |+++++++... +.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~------G~~~~Ilp~~~L~~~ 191 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG------GRAAIILPNGFLFSS 191 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE------EEEEEEEEHHHHHGS
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc------cceeEEecchhhhcc
Confidence 111113689999998765432 0 0124677777888888 78888876432 11
Q ss_pred ccHHHHHHHHhhcCceEEEcccC--CCCCcccceEEEEEeeecC
Q 023457 232 KKDSVFFKKAKKLFDVETIHADL--PCNGARVGVVVYRMTGKAK 273 (282)
Q Consensus 232 ~~~~~f~~~~~~~f~ve~v~~~~--~~~~~~~~~~v~~~~~~~~ 273 (282)
.....+.+.+.+.+.++.|-.-+ .+........++.+.+++.
T Consensus 192 ~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 192 SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 12344444444445555433222 2233455567777777653
No 204
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.005 Score=51.93 Aligned_cols=155 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCC--EEEEEeh-HhHHHHHHHHHHhccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGA--KVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~--~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
+++.-|.+..+++. ...++.+|+||||-.|..+..+++..+. .|+++|+ |--
T Consensus 28 RAa~KL~el~~k~~------------i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------- 82 (205)
T COG0293 28 RAAYKLLELNEKFK------------LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------- 82 (205)
T ss_pred hHHHHHHHHHHhcC------------eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-------------
Confidence 56777777777763 2346899999999999999999977764 4999999 420
Q ss_pred ccccCCCcEEEEEEEeCCCCcc-chh-hc-CCCccEEEEcCccCCC------------CCHHHHHHHHHHHHhcCCCCCC
Q 023457 153 LISLRGGSVHVAPLRWGEAEAN-DVA-VV-GREFDVILASDVVYHD------------HLFDPLLVTLRLFLNSGEPEPK 217 (282)
Q Consensus 153 ~~~~~~~~v~~~~ld~~~~~~~-~~~-~~-~~~fD~Ii~sd~ly~~------------~~~~~ll~~l~~ll~~g~~~~~ 217 (282)
....+...+.|+...... .+. .. ..++|+|++ |+--.. .....++......|+++
T Consensus 83 ----~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~----- 152 (205)
T COG0293 83 ----PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG----- 152 (205)
T ss_pred ----cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC-----
Confidence 122366777777763221 111 11 334698885 332211 12344555556678887
Q ss_pred CceEEEEEEeecCcccHHHHHHHHhhcCceEEEcccCCCCCcccceEEEEEeee
Q 023457 218 KKKMNFVMAHLRRWKKDSVFFKKAKKLFDVETIHADLPCNGARVGVVVYRMTGK 271 (282)
Q Consensus 218 ~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve~v~~~~~~~~~~~~~~v~~~~~~ 271 (282)
|.+++-..+ -+....++..+++.|+.-.+... .........+|.+-+.
T Consensus 153 -G~fv~K~fq---g~~~~~~l~~~~~~F~~v~~~KP--~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 153 -GSFVAKVFQ---GEDFEDLLKALRRLFRKVKIFKP--KASRKRSREIYLVAKG 200 (205)
T ss_pred -CeEEEEEEe---CCCHHHHHHHHHHhhceeEEecC--ccccCCCceEEEEEec
Confidence 554443322 22467888888888866554433 2222223356666554
No 205
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.65 E-value=0.00036 Score=60.74 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=68.3
Q ss_pred CccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 69 GLSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 69 g~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
++|..+-.-..++...++..... ++..|||+|.|||.++..+. ..+++|+|++. +.|+..+++.+
T Consensus 35 d~GQHilkNp~v~~~I~~ka~~k-------------~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv 100 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKADLK-------------PTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRV 100 (315)
T ss_pred ccchhhhcCHHHHHHHHhccCCC-------------CCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHh
Confidence 44545555566777766654433 47799999999999999997 56799999999 99999999877
Q ss_pred HhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEc
Q 023457 148 DANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILAS 189 (282)
Q Consensus 148 ~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~s 189 (282)
..-. .....++...|+-.. + ...||++|++
T Consensus 101 ~gtp-----~~~kLqV~~gD~lK~---d----~P~fd~cVsN 130 (315)
T KOG0820|consen 101 QGTP-----KSGKLQVLHGDFLKT---D----LPRFDGCVSN 130 (315)
T ss_pred cCCC-----ccceeeEEecccccC---C----Ccccceeecc
Confidence 6432 235666766555441 1 3568988875
No 206
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.65 E-value=0.00024 Score=63.24 Aligned_cols=108 Identities=10% Similarity=-0.036 Sum_probs=66.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhhcCCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~~~~~ 182 (282)
++..+++||||-|--.+-.-+++...++++|+ ...++.+++....-........-.+.+...|-...... .++..+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 47789999999887666665555689999999 77898888766532211000000122222221110011 11112345
Q ss_pred ccEEEEcCccCC----CCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYH----DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~----~~~~~~ll~~l~~ll~~g 212 (282)
||+|-+--++|+ .+....+++++.+.|+||
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 999988877764 345778899999999998
No 207
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.63 E-value=0.00013 Score=63.87 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc-ccc----------c-----------CCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG-LIS----------L-----------RGG 159 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~-~~~----------~-----------~~~ 159 (282)
..+|.++||||||+-+.-+..|......|+++|+ +...+.+++=+..-+. ... . ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568899999999976655444344578999999 8777766665433211 000 0 001
Q ss_pred cE-EEEEEEeCCCCccchhh---cCCCccEEEEcCccC----CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCc
Q 023457 160 SV-HVAPLRWGEAEANDVAV---VGREFDVILASDVVY----HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 160 ~v-~~~~ld~~~~~~~~~~~---~~~~fD~Ii~sd~ly----~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~ 231 (282)
.+ .+...|..+ ...+.. ..++||+|+++-|+. ..+.+...++.+.++|+|| |.+++.......+
T Consensus 134 ~Vk~Vv~cDV~~--~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG------G~Lil~~~l~~t~ 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQ--PNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG------GHLILAGVLGSTY 205 (256)
T ss_dssp HEEEEEE--TTS--SSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE------EEEEEEEESS-SE
T ss_pred hhceEEEeeccC--CCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC------cEEEEEEEcCcee
Confidence 12 233344444 222222 133599999988875 3446788899999999998 6666554321111
Q ss_pred -----------ccHHHHHH-HHh-hcCceEEEcc
Q 023457 232 -----------KKDSVFFK-KAK-KLFDVETIHA 252 (282)
Q Consensus 232 -----------~~~~~f~~-~~~-~~f~ve~v~~ 252 (282)
...+.+.. .++ .||.++....
T Consensus 206 Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 206 YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 12455544 333 4888887773
No 208
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.63 E-value=0.00092 Score=57.86 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
....|-|+|||-+-++. .....|...|+ +. ..+ +...|..+ .+..+.+.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-------------------~~~--V~~cDm~~-----vPl~d~sv 229 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-------------------NER--VIACDMRN-----VPLEDESV 229 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecC-------------------CCc--eeeccccC-----CcCccCcc
Confidence 35689999999877543 33467888887 31 122 23333333 34446889
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhh-cCceEEEcccCCCCCcccc
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKK-LFDVETIHADLPCNGARVG 262 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~-~f~ve~v~~~~~~~~~~~~ 262 (282)
|+++.+-.+. -.++..++..+.++|++| +.++++--..|+.....|.+.+.. ||.+..... ...-
T Consensus 230 DvaV~CLSLM-gtn~~df~kEa~RiLk~g-------G~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~------~n~~ 295 (325)
T KOG3045|consen 230 DVAVFCLSLM-GTNLADFIKEANRILKPG-------GLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV------SNKY 295 (325)
T ss_pred cEEEeeHhhh-cccHHHHHHHHHHHhccC-------ceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh------hcce
Confidence 9999865553 347889999999999998 667777666777777889888864 998876542 2334
Q ss_pred eEEEEEeeec
Q 023457 263 VVVYRMTGKA 272 (282)
Q Consensus 263 ~~v~~~~~~~ 272 (282)
+.+|.|.+-.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 5666666543
No 209
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00085 Score=57.48 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=74.4
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H-hHHHHHHHHHHhc
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-P-HVLTNLQFNVDAN 150 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~-~~l~~~~~n~~~n 150 (282)
.+=++++-|...|.... ...+|+++||||+.||-.+..+.+.++++|+++|. - .+-..++.
T Consensus 59 yVSRG~~KL~~ale~F~------------l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----- 121 (245)
T COG1189 59 YVSRGGLKLEKALEEFE------------LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----- 121 (245)
T ss_pred ccccHHHHHHHHHHhcC------------cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----
Confidence 35578889999997765 34679999999999999999998777899999998 3 33333432
Q ss_pred ccccccCCCcEEEE-EEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVA-PLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~-~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++.+. ..+.....+.+ ..+..|+|++--.+ -....++..+..+++++
T Consensus 122 -------d~rV~~~E~tN~r~l~~~~---~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~ 171 (245)
T COG1189 122 -------DPRVIVLERTNVRYLTPED---FTEKPDLIVIDVSF---ISLKLILPALLLLLKDG 171 (245)
T ss_pred -------CCcEEEEecCChhhCCHHH---cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCC
Confidence 2233222 22222211112 23467888884333 35677888888999887
No 210
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00061 Score=58.65 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=67.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
..+||||||.|-.-+.+|+..+ ..++++++ ...+..+.+.+...++ .++.+...|-.. ..+....+++.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~--~l~~~~~~~sl~ 121 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVE--VLDYLIPDGSLD 121 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHH--HHHhcCCCCCee
Confidence 5899999999999999997776 58999999 7777777666666543 145555433222 001111234788
Q ss_pred EEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 185 VILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
-|..+ |+..... ..+.+++.+.+.|++|
T Consensus 122 ~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 122 KIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred EEEEECCCCCCCccccccccCCHHHHHHHHHHccCC
Confidence 88875 5555332 3678999999999998
No 211
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.59 E-value=0.0002 Score=58.29 Aligned_cols=80 Identities=11% Similarity=-0.032 Sum_probs=57.0
Q ss_pred EEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHh
Q 023457 132 TVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLN 210 (282)
Q Consensus 132 ~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~ 210 (282)
+++|+ ++|++.++++....... ...++.+...|. .+++...+.||+|+++.++++..+...+++.+.++|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~-----~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDA-----IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEech-----hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC
Confidence 47899 99999998765432110 012455554433 3344446689999999999998999999999999999
Q ss_pred cCCCCCCCceEEEEE
Q 023457 211 SGEPEPKKKKMNFVM 225 (282)
Q Consensus 211 ~g~~~~~~g~~~il~ 225 (282)
|| |.++++-
T Consensus 73 pG------G~l~i~d 81 (160)
T PLN02232 73 PG------SRVSILD 81 (160)
T ss_pred cC------eEEEEEE
Confidence 98 5655543
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.55 E-value=0.0015 Score=65.44 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-------------------------------------------CCEEEEEeh-HhHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-------------------------------------------GAKVTVTDL-PHVL 140 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-------------------------------------------~~~V~~tD~-~~~l 140 (282)
.+..++|-+||+|.+.|.+|... ..+++++|+ +.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999999987531 126999999 9999
Q ss_pred HHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCC----CCHHHHHHHHHHHHh
Q 023457 141 TNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHD----HLFDPLLVTLRLFLN 210 (282)
Q Consensus 141 ~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~----~~~~~ll~~l~~ll~ 210 (282)
+.++.|+..++. .+.+.+...|+.+... ......||+|+++.+.... .....+...+...++
T Consensus 270 ~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~---~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 270 QAARKNARRAGV-----AELITFEVKDVADLKN---PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHcCC-----CcceEEEeCChhhccc---ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 999999999885 4456666666654211 1112469999998775432 234445555555554
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00041 Score=60.62 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++.+|||||+|.|.++..++ ..+++|+++++ +.+++.+++.... ..++.+..-|.-.. +++... .+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~---d~~~l~-~~ 96 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKF---DFPSLA-QP 96 (259)
T ss_pred CCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcC---cchhhc-CC
Confidence 37799999999999999998 45688999999 8899998876542 34566665444432 221111 67
Q ss_pred cEEEEcCccC
Q 023457 184 DVILASDVVY 193 (282)
Q Consensus 184 D~Ii~sd~ly 193 (282)
+.|+++-+.|
T Consensus 97 ~~vVaNlPY~ 106 (259)
T COG0030 97 YKVVANLPYN 106 (259)
T ss_pred CEEEEcCCCc
Confidence 8888865543
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.54 E-value=0.00017 Score=59.43 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...+-|||+|+|.++..+|.. +.+|++++. |.....+.+|+..++ ..++.+.+-|-.+ ... ...|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~-----y~f--e~AD 98 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARD-----YDF--ENAD 98 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccc-----ccc--cccc
Confidence 458999999999999999854 789999999 999999999987666 3456666533222 211 3568
Q ss_pred EEEEc--CccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILAS--DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~s--d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+|+|- |..--.+...+++..+..+|+..
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d 128 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFLRYD 128 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHhhcC
Confidence 88873 33333344556666666777766
No 215
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.53 E-value=0.0026 Score=53.88 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=85.7
Q ss_pred ehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 75 WPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 75 W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
=+++.+|.+||........ ......++|||||=+....+.. ..--.|+.+|+ +.
T Consensus 29 GdSSK~lv~wL~~~~~~~~--------~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~--------------- 83 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPK--------NGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ--------------- 83 (219)
T ss_pred CchhHHHHHHhhhhccccc--------cccccceEEeecccCCCCcccc--cCceeeEEeecCCC---------------
Confidence 3588899999976653320 0112369999999754433322 12246999998 42
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCC---HHHHHHHHHHHHhcCCCCCCCce-----EEEEE
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHL---FDPLLVTLRLFLNSGEPEPKKKK-----MNFVM 225 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g~~~~~~g~-----~~il~ 225 (282)
...+.+-||.+-.... ...+.||+|.+|-|+...+. ...++..+.++|+++ |. ++++.
T Consensus 84 ------~~~I~qqDFm~rplp~--~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~------g~~~~~~LFlVl 149 (219)
T PF11968_consen 84 ------HPGILQQDFMERPLPK--NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP------GLSLFPSLFLVL 149 (219)
T ss_pred ------CCCceeeccccCCCCC--CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC------CccCcceEEEEe
Confidence 2334555665521111 12568999999999977654 457888888999998 44 44444
Q ss_pred E----eecCcccHHHHHHHHhh-cCceEEEc
Q 023457 226 A----HLRRWKKDSVFFKKAKK-LFDVETIH 251 (282)
Q Consensus 226 ~----~~~~~~~~~~f~~~~~~-~f~ve~v~ 251 (282)
+ ...+|-....|...+.. ||..-+-.
T Consensus 150 P~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 150 PLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 3 23455556777776664 78665543
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=97.52 E-value=0.0023 Score=56.26 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=65.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..++||=||.|-|.....+++. ..+|+.+|+ +.+++.+++-+....... ...++.+.. |-. ....++|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~--~DpRv~l~~--~~~------~~~~~~f 140 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVK--NNKNFTHAK--QLL------DLDIKKY 140 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhh--cCCCEEEee--hhh------hccCCcC
Confidence 4689999999999999999754 469999999 999999988554322111 245565553 221 1113689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+||. |..+. +.+.+.+++.|+++
T Consensus 141 DVIIv-Ds~~~----~~fy~~~~~~L~~~ 164 (262)
T PRK00536 141 DLIIC-LQEPD----IHKIDGLKRMLKED 164 (262)
T ss_pred CEEEE-cCCCC----hHHHHHHHHhcCCC
Confidence 99996 65543 56778899999998
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.52 E-value=0.00077 Score=55.79 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-Hh
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PH 138 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~ 138 (282)
+++.-|.+.+..+..- ....+.+||||||++|-.+..++... ..+|+++|+ +.
T Consensus 4 Ra~~KL~ei~~~~~~~----------~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIF----------KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-----------TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCC----------CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4677788887765511 12246899999999999999998665 479999999 54
No 218
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.48 E-value=0.00096 Score=59.21 Aligned_cols=96 Identities=21% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.+...+|||+|||+|....++....+ .+++++|. +.|++..+.-+..... . ....|......+.. .
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~--~~~~~~~~~~~~~~-~ 99 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------N--RNAEWRRVLYRDFL-P 99 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------c--ccchhhhhhhcccc-c
Confidence 46778999999999987666554433 58999999 8888877764443211 0 00111110000011 1
Q ss_pred CCCccEEEEcCccCCCCC--HHHHHHHHHHHH
Q 023457 180 GREFDVILASDVVYHDHL--FDPLLVTLRLFL 209 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~--~~~ll~~l~~ll 209 (282)
....|+|+++.++..... ...+++.+...+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKT 131 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhc
Confidence 224499999999876554 334444444433
No 219
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=8.6e-05 Score=64.99 Aligned_cols=125 Identities=20% Similarity=0.114 Sum_probs=76.3
Q ss_pred ccceeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 70 LSFKLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 70 ~g~~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+|..+|++++.|..++.+.... ..++++.++|||.+.....++ +.+..|...+. ..+.-++..+..
T Consensus 67 tg~~~w~~al~L~~~l~~~~d~------------~~~~~v~~l~~gi~~~~~~~a-~~~~~v~~~~~~~~~~~~l~~~~~ 133 (262)
T KOG2497|consen 67 TGLSVWESALSLEADLRDKPDL------------SSELTVEELGCDIALKHVLAA-RVPDCVVTLDSLRCAGLLLEEIIL 133 (262)
T ss_pred hccccchHHHHHHHHHhhCccc------------ccccchHhhccCHHHHHHHHH-hcccceecCCccCcHHHHHHHHHh
Confidence 4779999999999999876632 458899999999999985554 44445555444 444334433333
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhc-CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.+..... ..+-..-++.|.. ....+.. ...+|+|+++|++|. .....++..+..+|..+
T Consensus 134 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 134 LSRDLSL--EVRDSAPELNQAF--LESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred ccccccc--cccccchhHHHHH--HhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 3221110 1111112222221 0000000 224899999999999 78888888888877654
No 220
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.00026 Score=60.18 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
-..++|||||.|.+.-.+....-.+++.+|. -.|++.++..- ...+....+. ++ .+.++...+++|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q----------dp~i~~~~~v-~D--EE~Ldf~ens~D 139 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ----------DPSIETSYFV-GD--EEFLDFKENSVD 139 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC----------CCceEEEEEe-cc--hhcccccccchh
Confidence 3489999999999998886554578999999 78888876521 1122222211 22 334444568999
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||++-.+|+..+++.-+..++..++|.
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLALKPD 167 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhcCCC
Confidence 9999999999999999999999999998
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0016 Score=57.86 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++||-||-|.|...-.+++... .+++++|+ +.+++.+++-+..-.... ...++.+..-|-.+ -+.....+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~Dg~~----~v~~~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIIDDGVE----FLRDCEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEeccHHH----HHHhCCCcCC
Confidence 6999999999999999986553 79999999 999999998765432111 12455544322111 1222234899
Q ss_pred EEEEcCccCCCC-----CHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDH-----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~-----~~~~ll~~l~~ll~~g 212 (282)
+||. |+.-... .-..+.+.+++.|+++
T Consensus 152 vIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 152 VIIV-DSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEE-cCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 9997 2221111 1378999999999998
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.40 E-value=0.0048 Score=54.50 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=77.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
....+||||.||.|.--+-+....+ .+|...|+ +..++..++-++.+++ .+.+++.+.|-.+ ...+...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd--~~~l~~l 206 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFD--RDSLAAL 206 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCC--HhHhhcc
Confidence 3466999999999998777765554 58999999 9999999999999885 4445777765444 3345555
Q ss_pred CCCccEEEEcCccCCCCC---HHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHL---FDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g 212 (282)
...++++|.+.++...++ +...++-+..++.||
T Consensus 207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 677899999987765444 556777888889898
No 223
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.36 E-value=0.0011 Score=61.32 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=65.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~fD 184 (282)
..|||||+|||++++++++.++-.|++.+. ..|.+.+++-...|+. .+++.+.+-.=. ++... ....|
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrSt-----ev~vg~~~Rad 137 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRST-----EVKVGGSSRAD 137 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccc-----eeeecCcchhh
Confidence 369999999999999999888789999999 9999999999999885 566666542111 11110 12356
Q ss_pred EEEEcCccC---CCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVY---HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly---~~~~~~~ll~~l~~ll~~g 212 (282)
+++..+..- ....++.+-....+|+.++
T Consensus 138 I~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 138 IAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhHhhhhhhhhccccchhHHHHHHHhcccC
Confidence 555543221 1234556666666777777
No 224
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.33 E-value=0.029 Score=47.86 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=83.6
Q ss_pred ccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHH
Q 023457 70 LSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 70 ~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~ 145 (282)
...++|+- ---|+..|..-.... +..+|.+||=||+.+|..--.++--.+ +.|++++. +.....+-.
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~---------~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~ 116 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENI---------PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN 116 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S-----------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred cceeecCchhhHHHHHHHcCcccc---------CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH
Confidence 36689983 344555553332222 446788999999999997766663333 69999999 765544433
Q ss_pred HHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 146 NVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 146 n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
-++. ..++-..--|-.. +......-+..|+|++ |+- .+.+.+.++.+...+|++| |. ++++
T Consensus 117 la~~--------R~NIiPIl~DAr~--P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~g------G~-~~i~ 177 (229)
T PF01269_consen 117 LAKK--------RPNIIPILEDARH--PEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPG------GH-LIIS 177 (229)
T ss_dssp HHHH--------STTEEEEES-TTS--GGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEE------EE-EEEE
T ss_pred Hhcc--------CCceeeeeccCCC--hHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCC------cE-EEEE
Confidence 2222 1222222112222 3333333557898887 554 4567888999999999998 44 4555
Q ss_pred EeecCcc----cHHHHHH---HHhh-cCce-EEEcc
Q 023457 226 AHLRRWK----KDSVFFK---KAKK-LFDV-ETIHA 252 (282)
Q Consensus 226 ~~~~~~~----~~~~f~~---~~~~-~f~v-e~v~~ 252 (282)
...+... +...|-+ .+++ +|++ +.+..
T Consensus 178 iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 178 IKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp EEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred EecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 4444332 2344433 3333 7887 44443
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.31 E-value=0.0023 Score=56.33 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++..|||||+|+|.++..++..+ .+|+++|. +.+.+.++..... ..++.+..-|+...+.... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~--~~~~~ 98 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDL--LKNQP 98 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGH--CSSSE
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHh--hcCCc
Confidence 58899999999999999998554 99999999 9999999876552 3477777766665322211 12345
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..|+++-+ |+ .-..++..+..+.+.|
T Consensus 99 ~~vv~NlP-y~--is~~il~~ll~~~~~g 124 (262)
T PF00398_consen 99 LLVVGNLP-YN--ISSPILRKLLELYRFG 124 (262)
T ss_dssp EEEEEEET-GT--GHHHHHHHHHHHGGGC
T ss_pred eEEEEEec-cc--chHHHHHHHhhccccc
Confidence 67777644 42 3345666665555554
No 226
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.29 E-value=0.005 Score=53.79 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR- 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~- 181 (282)
+.++||=||.|.|.....+.+.. ..+|+++|+ +.+++.+++-....... ....++++.. +++ ..-+.....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~---~Dg-~~~l~~~~~~ 149 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII---GDG-RKFLKETQEE 149 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE---STH-HHHHHTSSST
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE---hhh-HHHHHhccCC
Confidence 47799999999999988886433 279999999 99999998876653321 1245666654 221 011222234
Q ss_pred CccEEEE--cCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcc--cHHHHHHHHhhcCc
Q 023457 182 EFDVILA--SDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWK--KDSVFFKKAKKLFD 246 (282)
Q Consensus 182 ~fD~Ii~--sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~--~~~~f~~~~~~~f~ 246 (282)
+||+|+. .+...... .-..+++.+++.|+++ |.+++-+ ...... ........++..|.
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~------Gv~v~~~-~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD------GVLVLQA-GSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE------EEEEEEE-EETTTTHHHHHHHHHHHHTTSS
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC------cEEEEEc-cCcccchHHHHHHHHHHHHhCC
Confidence 8999997 23221111 2468899999999998 4443333 222221 23444555666665
No 227
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0014 Score=55.95 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-h-hcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-A-VVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~-~~~ 180 (282)
.+|.+|||-..|-|..++.++++++.+|+-++. +.+|+++.-|-=..++ +...+.+.. ++ ..++ . ..+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iil---GD--~~e~V~~~~D 203 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIIL---GD--AYEVVKDFDD 203 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEec---cc--HHHHHhcCCc
Confidence 468999999999999999998766569999999 9999888654321111 122222222 22 2211 1 125
Q ss_pred CCccEEEEcCccCCCC---CHHHHHHHHHHHHhcCCCCCCCceEEEEEE-eecCc---ccHHHHHHHHh-hcCc-eEEEc
Q 023457 181 REFDVILASDVVYHDH---LFDPLLVTLRLFLNSGEPEPKKKKMNFVMA-HLRRW---KKDSVFFKKAK-KLFD-VETIH 251 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g~~~~~~g~~~il~~-~~~~~---~~~~~f~~~~~-~~f~-ve~v~ 251 (282)
.+||+||--.+=+... --+.+.+.+.++|++| |+++-... ...++ .......+.++ .||. |+.+.
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg------GrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG------GRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC------CcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 6899999744433211 2467888999999999 55444332 22222 22445555554 4887 55554
No 228
>PHA01634 hypothetical protein
Probab=97.25 E-value=0.0013 Score=50.79 Aligned_cols=51 Identities=12% Similarity=-0.096 Sum_probs=46.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.+.++++|+|||++.|..++..+.+++..|++.+. +...+..+.|+..|..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 46789999999999999999999888889999999 8999999999998864
No 229
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.21 E-value=0.00021 Score=59.76 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=66.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.....++||||+|-|-++..++.. -.+|++|+. ..|...+++. ..-....++|.+ .+-
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk------------~ynVl~~~ew~~--------t~~ 168 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK------------NYNVLTEIEWLQ--------TDV 168 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc------------CCceeeehhhhh--------cCc
Confidence 345689999999999999888633 267999999 7787777651 111234456665 135
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+||+|.|-.++-.-.+.-.+++-|...++|.
T Consensus 169 k~dli~clNlLDRc~~p~kLL~Di~~vl~ps 199 (288)
T KOG3987|consen 169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPS 199 (288)
T ss_pred eeehHHHHHHHHhhcChHHHHHHHHHHhccC
Confidence 7999999888766667889999999999996
No 230
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.19 E-value=0.0053 Score=52.36 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--c
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--V 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--~ 179 (282)
..+++||||.=||.-++..|..++ ++|++.|+ ++..+....-++..+. ...+.+.+..-.+. ...+-. .
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~es-Ld~l~~~~~ 146 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPALES-LDELLADGE 146 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchhhh-HHHHHhcCC
Confidence 478999999999998888887765 79999999 8888888777776664 34555554322110 001111 2
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.++||++|.- .+...+......+-+|+++|
T Consensus 147 ~~tfDfaFvD---adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 147 SGTFDFAFVD---ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred CCceeEEEEc---cchHHHHHHHHHHHhhcccc
Confidence 5689999972 12334557778888899998
No 231
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.17 E-value=0.0016 Score=58.34 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~ 148 (282)
.++..+||.+||.|..+..++...+ .+|+++|. +.+++.+++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 3477999999999999999997764 79999999 999999988764
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=97.16 E-value=0.0029 Score=54.95 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=56.0
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccc--c-CCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLIS--L-RGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~--~-~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|||+-+|+|..++.++. .|++|+++|. +.+...++.|+..-..... . ...++.+..-+-.. .+......|
T Consensus 91 ~VLD~TAGlG~Da~~las-~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~----~L~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT----ALTDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH----HHhhCCCCC
Confidence 899999999999999985 4677999999 8899999999886311000 0 01234444322111 122223479
Q ss_pred cEEEEcCccCCCCCHH
Q 023457 184 DVILASDVVYHDHLFD 199 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~ 199 (282)
|+|+. |+.|-...-.
T Consensus 166 DVVYl-DPMfp~~~ks 180 (250)
T PRK10742 166 QVVYL-DPMFPHKQKS 180 (250)
T ss_pred cEEEE-CCCCCCCccc
Confidence 99997 7777544433
No 233
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.09 E-value=0.0011 Score=55.81 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCHHH----HHHHHHh---C---CEEEEEeh-HhHHHHHHHHHH-hcccc-c----------c------
Q 023457 105 CQLNILELGSGTGLVG----MAAAAIL---G---AKVTVTDL-PHVLTNLQFNVD-ANAGL-I----------S------ 155 (282)
Q Consensus 105 ~g~~VLELGcGtG~~s----i~la~~~---~---~~V~~tD~-~~~l~~~~~n~~-~n~~~-~----------~------ 155 (282)
+..+|+-.||+||--. +.+.... . .+|+|||+ +.+++.+++-+= .+... . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999743 3333211 1 38999999 889988865321 11100 0 0
Q ss_pred ----cCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccC--CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 156 ----LRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY--HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 156 ----~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly--~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.....|.+..++..+ .......||+|+|-.|+- +.+....+++.+.+.|+|| +.+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg-------G~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG-------GYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT------S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE-------EEEEE-
T ss_pred eEChHHcCceEEEecccCC-----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC-------CEEEEe
Confidence 012456777666554 111246899999988764 3456788999999999997 655554
No 234
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.06 E-value=0.0016 Score=51.80 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHH-----HhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAA-----ILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~-----~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.+..+|+|+|||-|.++..++. ..+.+|+++|. +..++.+++......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567999999999999999986 44579999999 888888777666543
No 235
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.018 Score=50.36 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+|.+|||-|.|+|.++.++++..+ ++++-.|+ ..-.+.+.+-....+ +.+.+.+..-|.-... +...
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-----i~~~vt~~hrDVc~~G---F~~k 174 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-----IGDNVTVTHRDVCGSG---FLIK 174 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-----CCcceEEEEeecccCC---cccc
Confidence 45699999999999999999997775 69999999 766666777677666 3677888877665421 1111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...+|.|+. | .......+-.+...++.+
T Consensus 175 s~~aDaVFL-D----lPaPw~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 175 SLKADAVFL-D----LPAPWEAIPHAAKILKDE 202 (314)
T ss_pred ccccceEEE-c----CCChhhhhhhhHHHhhhc
Confidence 356777776 3 345566667777788876
No 236
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.00 E-value=0.0028 Score=55.90 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCCCH----HHHHHHHHhC------CEEEEEeh-HhHHHHHHHHHHh--c---ccccc-------c-----
Q 023457 105 CQLNILELGSGTGL----VGMAAAAILG------AKVTVTDL-PHVLTNLQFNVDA--N---AGLIS-------L----- 156 (282)
Q Consensus 105 ~g~~VLELGcGtG~----~si~la~~~~------~~V~~tD~-~~~l~~~~~n~~~--n---~~~~~-------~----- 156 (282)
...+|+-.||+||- +++.+...++ -+|+|||+ ..+|+.++.-+=. + +.... .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36699999999995 3444444342 48999999 8899888653311 1 11000 0
Q ss_pred ------CCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCcc-C-CCCCHHHHHHHHHHHHhcC
Q 023457 157 ------RGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVV-Y-HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 157 ------~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~l-y-~~~~~~~ll~~l~~ll~~g 212 (282)
....|.+..++..... . ..+.||+|+|-+|+ | +.+....++..+...|++|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~----~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS----P-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc----c-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 0123444444443311 1 35679999997775 4 3556778999999999998
No 237
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.96 E-value=0.0042 Score=55.40 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCcEEEeCCCCCHHH----HHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHh----cccc------------------
Q 023457 106 QLNILELGSGTGLVG----MAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDA----NAGL------------------ 153 (282)
Q Consensus 106 g~~VLELGcGtG~~s----i~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~----n~~~------------------ 153 (282)
..+|+-.||+||--. +.+.... ..+|+|||+ +.+++.+++-+-. .+..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999743 3332222 147999999 9999998775311 0000
Q ss_pred --c-ccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 154 --I-SLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 --~-~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
+ ......|.+..++..+. ..+ ....||+|+|-+++.+ .+....+++.+.+.|+||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 00113344444444331 111 1468999999877644 356889999999999998
No 238
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.93 E-value=0.017 Score=48.97 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred EEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEE
Q 023457 109 ILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVI 186 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~I 186 (282)
|.|+||--|.+++.+.+... .+++++|+ +.-++.++.|+..+++ .+++.+..- ++ ...+. .....|+|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlg---dG-L~~l~-~~e~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLG---DG-LEVLK-PGEDVDTI 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE----SG-GGG---GGG---EE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEEC---Cc-ccccC-CCCCCCEE
Confidence 68999999999999986554 47999999 9999999999999885 456666652 21 11111 12237888
Q ss_pred EEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCceE
Q 023457 187 LASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDVE 248 (282)
Q Consensus 187 i~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~ve 248 (282)
+.+.+=- ..+..+++.....++.. ..++ .++.......+.|+. +.+|.+.
T Consensus 71 vIAGMGG--~lI~~ILe~~~~~~~~~-------~~lI-LqP~~~~~~LR~~L~--~~gf~I~ 120 (205)
T PF04816_consen 71 VIAGMGG--ELIIEILEAGPEKLSSA-------KRLI-LQPNTHAYELRRWLY--ENGFEII 120 (205)
T ss_dssp EEEEE-H--HHHHHHHHHTGGGGTT---------EEE-EEESS-HHHHHHHHH--HTTEEEE
T ss_pred EEecCCH--HHHHHHHHhhHHHhccC-------CeEE-EeCCCChHHHHHHHH--HCCCEEE
Confidence 8875541 12233333332222221 3344 444454444555553 3677663
No 239
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.92 E-value=0.007 Score=58.39 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
..+..+||||||.|-..+.+|...+ ..++++|+ ...+..+.+.+...++ .++.+...++.. ... .....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~--~~~-~~~~~ 416 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDL--ILN-DLPNN 416 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHH--HHH-hcCcc
Confidence 4567899999999999999987765 68999999 6666555555554432 244443322211 000 01246
Q ss_pred CccEEEEc--CccCCCC------CHHHHHHHHHHHHhcC
Q 023457 182 EFDVILAS--DVVYHDH------LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~s--d~ly~~~------~~~~ll~~l~~ll~~g 212 (282)
++|.|+.. |+..... ..+.+++.+.++|++|
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 78888875 5554322 3578999999999998
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.87 E-value=0.027 Score=50.22 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++.+|||+.||.|.=+..+|.... +.|++.|+ ..-+..++.|+...+. ..+.+...|... .......
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~---~~~~~~~ 154 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARK---LDPKKPE 154 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHH---HHHHHHT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccc---ccccccc
Confidence 4578999999999999888886664 79999999 8999999999988663 244444322111 0001123
Q ss_pred CCccEEEEc------CccCCCC----------------CHHHHHHHHHHHH----hcCCCCCCCceEEEEEEeecCc
Q 023457 181 REFDVILAS------DVVYHDH----------------LFDPLLVTLRLFL----NSGEPEPKKKKMNFVMAHLRRW 231 (282)
Q Consensus 181 ~~fD~Ii~s------d~ly~~~----------------~~~~ll~~l~~ll----~~g~~~~~~g~~~il~~~~~~~ 231 (282)
..||.|+.- .++...+ ....+++...+++ ++| |.+++..+.....
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g------G~lvYsTCS~~~e 225 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG------GRLVYSTCSLSPE 225 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE------EEEEEEESHHHGG
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC------CeEEEEeccHHHH
Confidence 469999962 2222221 1456788888888 998 6777766654333
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.024 Score=52.22 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---------------------------------C-------EEEEEeh-HhHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---------------------------------A-------KVTVTDL-PHVLTNL 143 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---------------------------------~-------~V~~tD~-~~~l~~~ 143 (282)
.+..++|-=||+|.+.|.+|.... + .+++.|+ +.+++.+
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 356899999999999999985431 1 3789999 9999999
Q ss_pred HHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccC----CCC----CHHHHHHHHHHHHhcC
Q 023457 144 QFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVY----HDH----LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 144 ~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly----~~~----~~~~ll~~l~~ll~~g 212 (282)
+.|+...++ .+.+.+.+.|... +......+|+||++.+.- ... .+..+.+++++.++.-
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~~-----l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADATD-----LKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchhh-----CCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 999999885 5567777766554 222225799999976632 122 2344555555666543
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.79 E-value=0.026 Score=49.98 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCcEEEeCCCC-CHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHH-hcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGT-GLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVD-ANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGt-G~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~-~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++|+=||||. -+.++.+++.. +..|+++|+ +.+.+.+++-+. ..++ ..++.+...|-.. .....
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~-----~~~dl 190 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLD-----VTYDL 190 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGG-----G-GG-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhc-----ccccc
Confidence 45999999997 55677777554 367999999 999999988776 3332 4566666544322 22223
Q ss_pred CCccEEEEcCccC-CCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVY-HDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly-~~~~~~~ll~~l~~ll~~g 212 (282)
..||+|+.+-.+. ..+.-..++..+.+.+++|
T Consensus 191 ~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 191 KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp ---SEEEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred ccCCEEEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 5899999887776 4557789999999999998
No 243
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0076 Score=50.97 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|.+||++|-|-|+..-.+-.+-+..-+.++. ++++..++.+.-. ...+|-+....|.+... .++ +..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~-~L~--d~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLN-TLP--DKH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhc-ccc--ccC
Confidence 568899999999999988775444567788888 9999988875433 23467777778887321 222 567
Q ss_pred ccEEEEcCcc-CCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVV-YHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~l-y~~~~~~~ll~~l~~ll~~g 212 (282)
||-|+- |.. .+-++...+.+.+.+||+|+
T Consensus 170 FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 170 FDGIYY-DTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred cceeEe-echhhHHHHHHHHHHHHhhhcCCC
Confidence 998886 443 33456777888999999998
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.61 E-value=0.054 Score=41.45 Aligned_cols=93 Identities=26% Similarity=0.281 Sum_probs=55.4
Q ss_pred EEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC-CCcc
Q 023457 109 ILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG-REFD 184 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~-~~fD 184 (282)
++|+|||+|... .++.... ..++++|. +.++...+..... .. ...+.+...++... .++... ..||
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~---~~~~~~~~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----LGLVDFVVADALGG---VLPFEDSASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----CCceEEEEeccccC---CCCCCCCCcee
Confidence 999999999977 3332333 37899999 7777774443322 10 11133343333321 012112 3799
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++......++.. ...++..+.+.++++
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 148 (257)
T COG0500 122 LVISLLVLHLLP-PAKALRELLRVLKPG 148 (257)
T ss_pred EEeeeeehhcCC-HHHHHHHHHHhcCCC
Confidence 994434443333 788999999999987
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.19 E-value=0.0088 Score=56.56 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H-----hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-P-----HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~-----~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
.++||+|||+|..|-.+.. ..|+.+-. + ..++.+.+ .|+ ...+.+ .+ ...++.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~---r~V~t~s~a~~d~~~~qvqfale----RGv-----pa~~~~----~~---s~rLPfp~ 179 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLE---RNVTTMSFAPNDEHEAQVQFALE----RGV-----PAMIGV----LG---SQRLPFPS 179 (506)
T ss_pred EEEEeccceeehhHHHHhh---CCceEEEcccccCCchhhhhhhh----cCc-----chhhhh----hc---cccccCCc
Confidence 4799999999999977753 33443333 2 22222211 111 001111 00 12466678
Q ss_pred CCccEEEEcCccCCC-CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHD-HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~-~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..||+|-++.|+-.. ..-..++-.+.|+|+|| ++.+++..
T Consensus 180 ~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG-------Gyfv~S~p 220 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG-------GYFVLSGP 220 (506)
T ss_pred cchhhhhcccccccchhcccceeehhhhhhccC-------ceEEecCC
Confidence 899999999887532 23356888899999998 55555544
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.18 E-value=0.2 Score=42.63 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+.++.|+||--|.+.+.+.+... ..+++.|+ +..++.+.+|+..+++ ..++.+...|--. .+ .....+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~----~l-~~~d~~ 86 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLA----VL-ELEDEI 86 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCcc----cc-CccCCc
Confidence 55799999999999999975544 58999999 9999999999999885 4566666533211 11 123479
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHhhcCce
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAKKLFDV 247 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~~~f~v 247 (282)
|+|+.+.+-- ..+..+++.-...++. ..-++..+..+....+.|+.. .+|.+
T Consensus 87 d~ivIAGMGG--~lI~~ILee~~~~l~~--------~~rlILQPn~~~~~LR~~L~~--~~~~I 138 (226)
T COG2384 87 DVIVIAGMGG--TLIREILEEGKEKLKG--------VERLILQPNIHTYELREWLSA--NSYEI 138 (226)
T ss_pred CEEEEeCCcH--HHHHHHHHHhhhhhcC--------cceEEECCCCCHHHHHHHHHh--CCcee
Confidence 9999875531 2234444444444432 223444444444445666654 45544
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.95 E-value=0.0024 Score=47.91 Aligned_cols=92 Identities=18% Similarity=0.074 Sum_probs=29.6
Q ss_pred EEeCCCCCHHHHHHHHHhC----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-CCCc
Q 023457 110 LELGSGTGLVGMAAAAILG----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV-GREF 183 (282)
Q Consensus 110 LELGcGtG~~si~la~~~~----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~-~~~f 183 (282)
||||+..|..++.+++... .+++++|. +. .+..+++++..+. ..++.+..-+..+ .++.. ..+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~----~l~~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPD----FLPSLPDGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THH----HHHHHHH--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHH----HHHHcCCCCE
Confidence 7999999998887775432 37999999 64 3333344333222 3355555432211 22222 3689
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+|+. |.-+..+....-+..+...++|+
T Consensus 71 dli~i-Dg~H~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 71 DLIFI-DGDHSYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp EEEEE-ES---HHHHHHHHHHHGGGEEEE
T ss_pred EEEEE-CCCCCHHHHHHHHHHHHHHcCCC
Confidence 99998 44443344555666666777776
No 248
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.93 E-value=0.02 Score=48.93 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHH---HHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAA---AILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la---~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++.++||||.|.- .|.-. ...+-+.+++|+ +..++.++.++..|... ...+.++.-.=.+.--......
T Consensus 77 ~~~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 77 GKNIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred cCceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccc
Confidence 46678999977742 22211 223568999999 99999999999998321 2223332210000000011122
Q ss_pred CCCccEEEEcCccCCC
Q 023457 180 GREFDVILASDVVYHD 195 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~ 195 (282)
.+.||..+|+.++|..
T Consensus 151 nE~yd~tlCNPPFh~s 166 (292)
T COG3129 151 NERYDATLCNPPFHDS 166 (292)
T ss_pred cceeeeEecCCCcchh
Confidence 5689999999999854
No 249
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=0.21 Score=41.47 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL 136 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~ 136 (282)
..++.+|||+||..|..+..+-++.+ +.|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 45688999999999999999876663 68999998
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.92 E-value=0.33 Score=42.89 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc------cccC-------------------
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL------ISLR------------------- 157 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~------~~~~------------------- 157 (282)
....+||==|||.|.++..+|. .|..+.+.+. --|+ +..|...|... +-+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3467899999999999999984 4789999999 4453 22333334311 0000
Q ss_pred -----------CCcEEEEEEEeCCCCccchhhc---CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 158 -----------GGSVHVAPLRWGEAEANDVAVV---GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 158 -----------~~~v~~~~ld~~~~~~~~~~~~---~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++.....|+.+ +... ...||+|+.+-.+--...+-..+++|.++|+||
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 0111111111111 1111 368999998744434456778899999999998
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.99 Score=38.09 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=85.7
Q ss_pred ceeehhH-HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHH
Q 023457 72 FKLWPAA-TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 72 ~~~W~~a-~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~ 148 (282)
.+.|+.- --||.-+..-...+ ...+|.+||=||+.+|..--..+--.+ ..|++++. +.++..+-.-+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~---------pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNF---------PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccC---------CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH
Confidence 5889832 33444443332222 346789999999999987666653334 68999999 765544433332
Q ss_pred hcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 149 ANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 149 ~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
. ..++-..--|-.. ++.....-+..|+|+. |+- .+.+.+-+..+...+|+++ +.++++...
T Consensus 122 ~--------R~Ni~PIL~DA~~--P~~Y~~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~-------G~~~i~iKA 182 (231)
T COG1889 122 K--------RPNIIPILEDARK--PEKYRHLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKG-------GYVVIAIKA 182 (231)
T ss_pred h--------CCCceeeecccCC--cHHhhhhcccccEEEE-ecC-CchHHHHHHHHHHHhcccC-------CeEEEEEEe
Confidence 2 1111111111111 2222222345666665 332 3456788899999999998 445555555
Q ss_pred cCccc----HHHHHHH---Hh-hcCceEEEcccCCCC
Q 023457 229 RRWKK----DSVFFKK---AK-KLFDVETIHADLPCN 257 (282)
Q Consensus 229 ~~~~~----~~~f~~~---~~-~~f~ve~v~~~~~~~ 257 (282)
|.... ..-|-+. ++ .+|++..+-.-.|.+
T Consensus 183 rSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye 219 (231)
T COG1889 183 RSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYE 219 (231)
T ss_pred ecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcc
Confidence 55543 3334323 33 467775444333433
No 252
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.77 E-value=0.066 Score=49.69 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
+.+|||-=||+|+=|+-.++..+ .+|++-|+ +++++.+++|++.|++.. +++.+...|-.. -+......
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~----ll~~~~~~ 121 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANV----LLYSRQER 121 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHH----HHCHSTT-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHH----Hhhhcccc
Confidence 45899999999999999997743 69999999 999999999999999631 245555432211 11123568
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||+|=. |++ ....++++...+.++.|
T Consensus 122 fD~IDl-DPf---GSp~pfldsA~~~v~~g 147 (377)
T PF02005_consen 122 FDVIDL-DPF---GSPAPFLDSALQAVKDG 147 (377)
T ss_dssp EEEEEE---S---S--HHHHHHHHHHEEEE
T ss_pred CCEEEe-CCC---CCccHhHHHHHHHhhcC
Confidence 998866 665 45678888888888887
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.73 E-value=0.17 Score=45.83 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEE--EEEEeCCCCccch
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHV--APLRWGEAEANDV 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~--~~ld~~~~~~~~~ 176 (282)
++.+|+|||||.|.=...+...+ ...++++|+ .++|+.+..++.... ...+.+ ...|+.+.. ..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------~p~l~v~~l~gdy~~~l-~~l 148 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------FSHVRCAGLLGTYDDGL-AWL 148 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------CCCeEEEEEEecHHHHH-hhc
Confidence 45689999999998655444333 257999999 889988888887211 123444 333443310 011
Q ss_pred hh--cCCCccEEEE-cCccCC--CCCHHHHHHHHHH-HHhcC
Q 023457 177 AV--VGREFDVILA-SDVVYH--DHLFDPLLVTLRL-FLNSG 212 (282)
Q Consensus 177 ~~--~~~~fD~Ii~-sd~ly~--~~~~~~ll~~l~~-ll~~g 212 (282)
+. ......+|+. ...+.+ +.....+++.+++ .++++
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 11 1223455554 345554 3455678889988 88888
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.59 E-value=0.02 Score=48.56 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=61.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...|+|.-||.|-.++..| ..+..|+++|+ |.-+..++.|++--|. .+++.+.+.||.+.. ..+......+|
T Consensus 95 ~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~-~~lq~~K~~~~ 167 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLA-SKLKADKIKYD 167 (263)
T ss_pred cchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHH-HHHhhhhheee
Confidence 4489999999999888887 44689999999 9999999999998885 558999998887621 11111233477
Q ss_pred EEEEcCccCC
Q 023457 185 VILASDVVYH 194 (282)
Q Consensus 185 ~Ii~sd~ly~ 194 (282)
+++.+...-.
T Consensus 168 ~vf~sppwgg 177 (263)
T KOG2730|consen 168 CVFLSPPWGG 177 (263)
T ss_pred eeecCCCCCC
Confidence 8888766543
No 255
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.08 Score=48.35 Aligned_cols=99 Identities=27% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc-hhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND-VAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~-~~~~~~~ 182 (282)
..+|||-=+|||+=||-.|...+. +|++-|+ |.+.+.++.|+..|.. ....+.+ .+ ... +......
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n---~D--AN~lm~~~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------EDAEVIN---KD--ANALLHELHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------ccceeec---ch--HHHHHHhcCCC
Confidence 679999999999999999977776 8999999 9999999999999932 1222222 11 111 1122467
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
||+|=. |++ ....++++...+..+.+ |-+++.+
T Consensus 122 fd~IDi-DPF---GSPaPFlDaA~~s~~~~------G~l~vTA 154 (380)
T COG1867 122 FDVIDI-DPF---GSPAPFLDAALRSVRRG------GLLCVTA 154 (380)
T ss_pred ccEEec-CCC---CCCchHHHHHHHHhhcC------CEEEEEe
Confidence 897755 665 34556777777777776 4555544
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.41 E-value=0.51 Score=41.84 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=33.6
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+|+||-||.|.+++.+...+...|+++|+ +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 79999999999988886444456889999 888888888764
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.32 E-value=0.28 Score=44.94 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccc-cCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLIS-LRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~-~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.-.+||=||.|-|+....+.+..+ .+|+.+|+ |+|++.+++|......... ....++++..-|-.+ .+.....
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~----wlr~a~~ 364 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ----WLRTAAD 364 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH----HHHhhcc
Confidence 346899999999999998864432 69999999 9999999866543222111 124566666533222 2222346
Q ss_pred CccEEEEcCccC-CCCC-----HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHH---HHh-hcCceEEEc
Q 023457 182 EFDVILASDVVY-HDHL-----FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFK---KAK-KLFDVETIH 251 (282)
Q Consensus 182 ~fD~Ii~sd~ly-~~~~-----~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~---~~~-~~f~ve~v~ 251 (282)
.||+||.- ..- .... -.++-..+++.++++ |.+ ++-+ ...+...+.||. .++ .||.+...+
T Consensus 365 ~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l~e~------Gl~-VvQa-gs~y~tp~vfw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 365 MFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHLAET------GLM-VVQA-GSPYFTPRVFWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred cccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhcCcC------ceE-EEec-CCCccCCceeeeehhHHHhCcceeeeeE
Confidence 89999973 211 1111 234566677778877 343 3332 233333344443 333 477665444
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.029 Score=50.84 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=57.1
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc--chh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN--DVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~--~~~ 177 (282)
.++..++|||+|.|.|....++-..++ .+++.++....+..+-..+..|.. ....+|...+.. .++
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------t~~td~r~s~vt~dRl~ 179 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------TEKTDWRASDVTEDRLS 179 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------cccCCCCCCccchhccC
Confidence 456788999999998875544432223 466666664444444444444432 122344432211 111
Q ss_pred h-cCCCccEEEEcCccCCCC---CHHHHHHHHHHHHhcC
Q 023457 178 V-VGREFDVILASDVVYHDH---LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~-~~~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g 212 (282)
. ....|++|+..+=+-+.. .+...++.+..++.||
T Consensus 180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred CCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 1 134688888876655433 3445777788888887
No 259
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.99 E-value=0.11 Score=50.15 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=37.7
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..++.+|+=+|||. |+.++.+|+..|+.|+++|. ++.++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35688999999996 99999999888999999999 888887765
No 260
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.89 E-value=0.077 Score=47.70 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
...|.+||=+|||+ |++++.+|+..+ ++|+++|+ +.-++.+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 35688999999996 999999987776 69999999 999999987
No 261
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.72 E-value=0.079 Score=48.87 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.++..++++|||.|-+....+.-..+.+++.|. +.-+...........+ .....+ +.-|-- ..+..+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~-~~~~~~----~~~fedn~ 178 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNF-VVADFG----KMPFEDNT 178 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcce-ehhhhh----cCCCCccc
Confidence 445589999999999999998666689999998 5422222111111110 111112 222211 12334679
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||.+-+.++.-+.+....+++.+.+.++||
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCC
Confidence 999999999999999999999999999998
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.21 E-value=0.42 Score=43.62 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 103 NGCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 103 ~~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
..+|.+|+=.|+| .|..++.+|+..+++|+++|. ++-++.+++--+ . ...++.+ ........
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-----------d---~~i~~~~--~~~~~~~~ 227 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-----------D---HVINSSD--SDALEAVK 227 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-----------c---EEEEcCC--chhhHHhH
Confidence 4568899999997 466788888878899999999 777777765211 1 1122322 21222222
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..||+||..-. ...+....++|+++ |+++++-..
T Consensus 228 ~~~d~ii~tv~-------~~~~~~~l~~l~~~------G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG-------PATLEPSLKALRRG------GTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC-------hhhHHHHHHHHhcC------CEEEEECCC
Confidence 34999987422 34455555677777 565555433
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.10 E-value=2.1 Score=40.07 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=81.4
Q ss_pred cCCCCCCCcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 100 SLSNGCQLNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 100 ~~~~~~g~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
.+...+|.+|||+.|-.|-=+..+|... .+.|++.|. ..-+..++.|+.+.+. .+.-+.+.|-..+....
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~- 308 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKE- 308 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccc-
Confidence 3466789999999999877666665444 368999999 8888999999988773 23334444332211111
Q ss_pred hhcCCCccEEEE----cC--ccCCCC----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccH
Q 023457 177 AVVGREFDVILA----SD--VVYHDH----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKD 234 (282)
Q Consensus 177 ~~~~~~fD~Ii~----sd--~ly~~~----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~ 234 (282)
..++||-|+. +. +++... ....|+.....++++| |-+++-.+..- .+..
T Consensus 309 --~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G------GvLVYSTCSI~-~~EN 379 (460)
T KOG1122|consen 309 --FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG------GVLVYSTCSIT-VEEN 379 (460)
T ss_pred --cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC------cEEEEEeeecc-hhhh
Confidence 2348999994 33 454322 2445666677788887 45554444322 2222
Q ss_pred HHHHHHHhhcC-ceEEEccc
Q 023457 235 SVFFKKAKKLF-DVETIHAD 253 (282)
Q Consensus 235 ~~f~~~~~~~f-~ve~v~~~ 253 (282)
+.-.+.+-..| +++.++..
T Consensus 380 E~vV~yaL~K~p~~kL~p~~ 399 (460)
T KOG1122|consen 380 EAVVDYALKKRPEVKLVPTG 399 (460)
T ss_pred HHHHHHHHHhCCceEecccc
Confidence 23333333344 55555433
No 264
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.02 E-value=0.78 Score=36.40 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=57.0
Q ss_pred EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cCC-CccEEEEcCccCCC----------C
Q 023457 130 KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VGR-EFDVILASDVVYHD----------H 196 (282)
Q Consensus 130 ~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~~-~fD~Ii~sd~ly~~----------~ 196 (282)
+|++.|+ +++++..++++..++. ..++.+..-. -+.+.. ... ++|.++-+- =|-+ +
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~s-----He~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~ 69 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDS-----HENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPE 69 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES------GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECC-----HHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcH
Confidence 6899999 9999999999998774 3355554411 222222 233 789888652 2211 1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCccc------HHHHHHHHh-hcCceEEEc
Q 023457 197 LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKK------DSVFFKKAK-KLFDVETIH 251 (282)
Q Consensus 197 ~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~------~~~f~~~~~-~~f~ve~v~ 251 (282)
..-..++.+..+|++| |.+++++ +..+.+. ...|+..+. +.|.|....
T Consensus 70 TTl~Al~~al~lL~~g------G~i~iv~-Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 70 TTLKALEAALELLKPG------GIITIVV-YPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHHHHHHHHHHHEEEE------EEEEEEE---STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred HHHHHHHHHHHhhccC------CEEEEEE-eCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 2334556666778887 4544444 4444433 234444443 467776554
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.01 E-value=0.6 Score=41.20 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCCCCCcEEEeCCCCCHHHHHHHHH-hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 101 LSNGCQLNILELGSGTGLVGMAAAAI-LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 101 ~~~~~g~~VLELGcGtG~~si~la~~-~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.+..|+.|+=+| ---+.|+++|.. .+.+|..+|+ +..+..+.+-++.-+. .++.+..+|..++.++++
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~-- 218 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDL-- 218 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHH--
Confidence 4567899999999 667778877633 3579999999 8899999888877653 356777777777544443
Q ss_pred cCCCccEEEEcCccCCCCCHHHHHH
Q 023457 179 VGREFDVILASDVVYHDHLFDPLLV 203 (282)
Q Consensus 179 ~~~~fD~Ii~sd~ly~~~~~~~ll~ 203 (282)
..+||+++. |+.+....+..++.
T Consensus 219 -~~kFDvfiT-DPpeTi~alk~Flg 241 (354)
T COG1568 219 -KRKFDVFIT-DPPETIKALKLFLG 241 (354)
T ss_pred -HhhCCeeec-CchhhHHHHHHHHh
Confidence 578998775 55544444444443
No 266
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.95 E-value=0.24 Score=44.95 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=61.7
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh--HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL--PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~--~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
...+|+|+|+|.+.-.+.. ...+|-+++. +.+++.+.. +. .+ |....-|.-+ + .++-|
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~-~~-~g---------V~~v~gdmfq----~----~P~~d 238 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPY-LA-PG---------VEHVAGDMFQ----D----TPKGD 238 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhh-hc-CC---------cceecccccc----c----CCCcC
Confidence 6899999999999888876 4455777776 455554433 32 11 2222222222 1 34568
Q ss_pred EEEEcCccCCCC--CHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 185 VILASDVVYHDH--LFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 185 ~Ii~sd~ly~~~--~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
+|++--++++.. +...+++.++..|+|+ |+++++
T Consensus 239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~------GkIiv~ 274 (342)
T KOG3178|consen 239 AIWMKWILHDWTDEDCVKILKNCKKSLPPG------GKIIVV 274 (342)
T ss_pred eEEEEeecccCChHHHHHHHHHHHHhCCCC------CEEEEE
Confidence 999999999854 5779999999999998 565554
No 267
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.71 E-value=0.69 Score=42.47 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch-hhc-
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-AVV- 179 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-~~~- 179 (282)
.+.+|+=+|||+ |++++.+++..+ ++|+++|. +.-++.+++.... .+.+..... + ..... ...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----------~~~~~~~~~-~-~~~~~~~~t~ 235 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----------DVVVNPSED-D-AGAEILELTG 235 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----------eEeecCccc-c-HHHHHHHHhC
Confidence 344999999997 999988887666 68999999 8888888762211 000000000 0 00001 111
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
...+|++|=+-- ....+..+.++++++ |.++++..+...
T Consensus 236 g~g~D~vie~~G------~~~~~~~ai~~~r~g------G~v~~vGv~~~~ 274 (350)
T COG1063 236 GRGADVVIEAVG------SPPALDQALEALRPG------GTVVVVGVYGGE 274 (350)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHhcCC------CEEEEEeccCCc
Confidence 236999986432 445777888899998 677776655433
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.66 E-value=0.34 Score=42.62 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=55.2
Q ss_pred cEEEeCCCC---CHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 108 NILELGSGT---GLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 108 ~VLELGcGt---G~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
-.||||||. |.+- ..|+.. .++|+-+|. |-++...+.-+..+. .++..+..-|..+ +..+-.
T Consensus 71 QFLDlGsGlPT~~nvH-evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------~g~t~~v~aD~r~--p~~iL~~p~ 141 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVH-EVAQRVAPDARVVYVDNDPVVLAHARALLADNP------RGRTAYVQADLRD--PEAILAHPE 141 (267)
T ss_dssp EEEEET--S--SS-HH-HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------TSEEEEEE--TT---HHHHHCSHH
T ss_pred eEEEcccCCCCCCCHh-HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------CccEEEEeCCCCC--HHHHhcCHH
Confidence 699999993 4433 333333 489999999 888888887766543 2346777777665 322111
Q ss_pred cC-----CCccEEEEcCccCCC---CCHHHHHHHHHHHHhcC
Q 023457 179 VG-----REFDVILASDVVYHD---HLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~-----~~fD~Ii~sd~ly~~---~~~~~ll~~l~~ll~~g 212 (282)
.. ...=.+++..++++. ++...+++.+...|.||
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 11 222355666777653 56889999999999998
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.56 E-value=0.27 Score=42.71 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
..+|+|||||.=.+++...... ++.|++.|+ ..+++.+.+-+...+. ...+...|... + .+....
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------~~~~~v~Dl~~----~--~~~~~~ 172 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------PHDARVRDLLS----D--PPKEPA 172 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TTT----S--HTTSEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------CcceeEeeeec----c--CCCCCc
Confidence 5699999999999888765222 369999999 9999999887776543 33344333332 1 124568
Q ss_pred cEEEEcCcc
Q 023457 184 DVILASDVV 192 (282)
Q Consensus 184 D~Ii~sd~l 192 (282)
|+.+.--++
T Consensus 173 DlaLllK~l 181 (251)
T PF07091_consen 173 DLALLLKTL 181 (251)
T ss_dssp SEEEEET-H
T ss_pred chhhHHHHH
Confidence 999986443
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.43 E-value=0.058 Score=47.90 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCcEEEeCCCCCHHHH-HHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 105 CQLNILELGSGTGLVGM-AAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si-~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+..|.||=+|.|..++ .+..++++.|++.|. |.+++.+++|++.|+.. ++..+...|- ....+...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~------R~~~~~~~ 262 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDN------RNPKPRLR 262 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccc------cccCcccc
Confidence 46789999999999998 665566789999999 99999999999999752 2322222111 22233456
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.|-|...-.--....+...+ ++|++.
T Consensus 263 AdrVnLGLlPSse~~W~~A~----k~Lk~e 288 (351)
T KOG1227|consen 263 ADRVNLGLLPSSEQGWPTAI----KALKPE 288 (351)
T ss_pred chheeeccccccccchHHHH----HHhhhc
Confidence 77777654443333444333 456665
No 271
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.43 E-value=0.45 Score=45.06 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH-HHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ-FNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~-~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
.++|.+|||.--+...+-..+-..|+.+|+ +.++..+. .|... ..-......+.. .+...++.||
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--------~~~~~~~~~d~~-----~l~fedESFd 116 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--------RPEMQMVEMDMD-----QLVFEDESFD 116 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--------CcceEEEEecch-----hccCCCccee
Confidence 489999999998888886444478999999 66665544 33321 122333333322 2334467899
Q ss_pred EEEEcCc---cC-------CCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 185 VILASDV---VY-------HDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 185 ~Ii~sd~---ly-------~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
+||.-.. +. +.......+..+.++++++ |+++.++.
T Consensus 117 iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~------gk~~svtl 162 (482)
T KOG2352|consen 117 IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPG------GKYISVTL 162 (482)
T ss_pred EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccC------CEEEEEEe
Confidence 9986422 22 2223456778888999998 66655554
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.11 E-value=0.79 Score=41.63 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
++.+||=.|||. |...+.+|+..++ +|+++|. ++-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 578899899874 7777777777776 7999998 777776654
No 273
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.75 E-value=0.098 Score=48.58 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEe
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRW 168 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~ 168 (282)
..|..|.|+-||.|..++.+++.+ +.|++-|+ +++++.++.|+..|... ..++.+.++|-
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda 308 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDA 308 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccH
Confidence 458899999999999999998665 99999999 99999999999999863 23366666553
No 274
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.35 E-value=0.41 Score=40.27 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|..|||--||+|..++++. .++.+.+++|+ +...+.+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 358899999999999999885 78899999999 888877753
No 275
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.12 E-value=0.8 Score=41.23 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=39.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.++..++|-=+|.|--+..++...+ ++|+++|. +.++..+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3577999999999999999987653 89999999 9999999887754
No 276
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=0.72 Score=42.23 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---------CCEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---------GAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---------~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
...++|||+|+|.+.--+++.. +.++..++. ++....-+.+++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4589999999999987665443 468999999 554444444443
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.32 E-value=14 Score=35.54 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=89.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-- 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-- 176 (282)
+..+|.|--||+|..-+.++...+ ..+++.+. +....+++.|...++... .+... .++......
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~---~~dtl~~~~~~ 257 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIR---HGDTLSNPKHD 257 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----ccccc---ccccccCCccc
Confidence 456999999999988777665553 45899998 899999999999888531 11111 111000000
Q ss_pred -hhcCCCccEEEEcCccCCC-------------------------CCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecC
Q 023457 177 -AVVGREFDVILASDVVYHD-------------------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRR 230 (282)
Q Consensus 177 -~~~~~~fD~Ii~sd~ly~~-------------------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~ 230 (282)
......||+|+++.++... ......+..+...++|+ |+..+++.+.--
T Consensus 258 ~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~------g~aaivl~~gvl 331 (489)
T COG0286 258 DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG------GRAAIVLPDGVL 331 (489)
T ss_pred ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC------ceEEEEecCCcC
Confidence 1123579999998776510 01256777888888887 566766654322
Q ss_pred cc--cHHHHHHHHhhcCceEEEcccCCC--CCcccceEEEEEeeecCCC
Q 023457 231 WK--KDSVFFKKAKKLFDVETIHADLPC--NGARVGVVVYRMTGKAKSS 275 (282)
Q Consensus 231 ~~--~~~~f~~~~~~~f~ve~v~~~~~~--~~~~~~~~v~~~~~~~~~~ 275 (282)
+. .....-..+.....++.+-.-+.. -.......|+.+.|.+...
T Consensus 332 fr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 332 FRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred cCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 22 233333333233344433332222 2223445666666665443
No 278
>PRK11524 putative methyltransferase; Provisional
Probab=91.00 E-value=0.88 Score=40.48 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=40.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
..+|..|||--||+|..++++. .++.+.+++|+ ++.++.+++.+..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4568899999999999999875 77899999999 8989998888753
No 279
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.86 E-value=0.32 Score=46.11 Aligned_cols=100 Identities=27% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++.+|||-=|+||+-+|..|+..+ .+|++-|. +.++..+++|+..|+.. +.+....-|-... .......
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~l-M~~~~~~ 180 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVL-MYEHPMV 180 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHH-HHhcccc
Confidence 45677999999999999999997775 58999999 99999999999999642 2222222111110 0001112
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...||+|=. |++ .....+++...+.++.|
T Consensus 181 ~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 181 AKFFDVIDL-DPY---GSPSPFLDSAVQAVRDG 209 (525)
T ss_pred ccccceEec-CCC---CCccHHHHHHHHHhhcC
Confidence 367998865 554 23445666666777776
No 280
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=90.50 E-value=0.25 Score=44.79 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=53.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHH-------HHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLT-------NLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~-------~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.+|+.|.|=-.|||.+-+.+| ..|+.|+++|+ -.++. .++.|.+.-+.. ...+.+...|+.+...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~~-- 279 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPPL-- 279 (421)
T ss_pred CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcch--
Confidence 468899999999999988887 78899999999 55554 345555554421 2334555555554211
Q ss_pred hhhcCCCccEEEEcCccC
Q 023457 176 VAVVGREFDVILASDVVY 193 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly 193 (282)
-. ...||.||| |+-|
T Consensus 280 rs--n~~fDaIvc-DPPY 294 (421)
T KOG2671|consen 280 RS--NLKFDAIVC-DPPY 294 (421)
T ss_pred hh--cceeeEEEe-CCCc
Confidence 11 457999997 5555
No 281
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.48 E-value=0.32 Score=43.03 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
+..++|+|||-|-.... .....+++.|+ ...+..+++ .+...+.. .+ ...++.....||
T Consensus 46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~------------~~~~~~~~---ad--~l~~p~~~~s~d 105 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR------------SGGDNVCR---AD--ALKLPFREESFD 105 (293)
T ss_pred cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc------------CCCceeeh---hh--hhcCCCCCCccc
Confidence 77999999999864421 12357889998 666555543 11101111 11 222344467899
Q ss_pred EEEEcCccCCCCC---HHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHL---FDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~---~~~ll~~l~~ll~~g 212 (282)
.+++.-+++|... -..+++.+.+.++||
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 9999999998654 457888888899998
No 282
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.97 E-value=5.1 Score=34.91 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=93.2
Q ss_pred CccceeehhH---HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 69 GLSFKLWPAA---TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 69 g~g~~~W~~a---~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
|++ ++|.+. ..|..||...... +.+.+ |..=||+=.++-.+. +..-++.++++ +.-...++
T Consensus 63 GI~-RL~~a~~lpa~l~~yl~~i~~l------------N~~~~-l~~YpGSP~lA~~ll-R~qDRl~l~ELHp~D~~~L~ 127 (279)
T COG2961 63 GIA-RLWQAADLPAELEPYLDAVRQL------------NPGGG-LRYYPGSPLLARQLL-REQDRLVLTELHPSDAPLLR 127 (279)
T ss_pred HHH-HHHhcCCchHHHHHHHHHHHHh------------CCCCC-cccCCCCHHHHHHHc-chhceeeeeecCccHHHHHH
Confidence 444 777754 5666777554421 22333 666777766665554 33468999999 88888888
Q ss_pred HHHHhcccccccCCCcEEEEEEE-eCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEE
Q 023457 145 FNVDANAGLISLRGGSVHVAPLR-WGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNF 223 (282)
Q Consensus 145 ~n~~~n~~~~~~~~~~v~~~~ld-~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~i 223 (282)
.|... ..++.+...| |.. ....++ +..+--+|+.-..+....+++.+++++...++.=+ ++++.
T Consensus 128 ~~f~~--------d~~vrv~~~DG~~~-l~a~LP-P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~-----~g~ya 192 (279)
T COG2961 128 NNFAG--------DRRVRVLRGDGFLA-LKAHLP-PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFA-----TGTYA 192 (279)
T ss_pred HHhCC--------CcceEEEecCcHHH-HhhhCC-CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhc-----CceEE
Confidence 88773 3466666644 221 011121 13445678876666677889999999999887642 45566
Q ss_pred EEEeecCcccHHHHHHHHhh
Q 023457 224 VMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 224 l~~~~~~~~~~~~f~~~~~~ 243 (282)
+.+........+.|++.++.
T Consensus 193 iWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 193 IWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred EEEeecchHHHHHHHHHHhh
Confidence 66666666677888888764
No 283
>PRK13699 putative methylase; Provisional
Probab=89.74 E-value=1.6 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=38.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA 149 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~ 149 (282)
.+|..|||--||+|..++++. ..+.+++++|+ +...+.+.+.+..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 458899999999999998885 67899999999 8888888777654
No 284
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.70 E-value=0.88 Score=43.38 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-H----hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-P----HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~----~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
=.+|+|..+|.|-.+-++. ...|+..-. + ..+..+-. .| -+. .-.||-+ .++..+
T Consensus 366 iRNVMDMnAg~GGFAAAL~---~~~VWVMNVVP~~~~ntL~vIyd----RG--------LIG-~yhDWCE----~fsTYP 425 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALI---DDPVWVMNVVPVSGPNTLPVIYD----RG--------LIG-VYHDWCE----AFSTYP 425 (506)
T ss_pred eeeeeeecccccHHHHHhc---cCCceEEEecccCCCCcchhhhh----cc--------cch-hccchhh----ccCCCC
Confidence 4589999999998775553 234555554 3 23333321 12 122 2347776 445457
Q ss_pred CCccEEEEcCccCC---CCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYH---DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~---~~~~~~ll~~l~~ll~~g 212 (282)
.+||+|-++.++-. .-.++.++-.+.|+|+|+
T Consensus 426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~ 460 (506)
T PF03141_consen 426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPG 460 (506)
T ss_pred cchhheehhhhhhhhcccccHHHHHHHhHhhcCCC
Confidence 89999999877643 235788999999999998
No 285
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=89.44 E-value=0.41 Score=40.35 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
...+.|||||.|-+-+.++...+ ..+.+.++ ..+-+.++..|....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 45799999999999888876655 46889999 888888888887543
No 286
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.20 E-value=1.4 Score=37.63 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDAN 150 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n 150 (282)
.+-++.|=.||.|.+--.+....+ ..|+++|+ +++++.+++|+.+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 356899999999998766653333 58999999 99999999999754
No 287
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.48 E-value=5.3 Score=36.07 Aligned_cols=89 Identities=13% Similarity=-0.043 Sum_probs=53.4
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
.+|.+||=.|+|. |...+.+|+..+++|++++. ++-++.+++ .+. +. + ++-.+ . ...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------~~--v--i~~~~--~-----~~~ 222 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------AS--A--GGAYD--T-----PPE 222 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------ce--e--ccccc--c-----Ccc
Confidence 4588999999863 66667777777788999998 666666554 110 01 0 01001 0 023
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEE
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVM 225 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~ 225 (282)
.+|+++-.+.. ...+....++++++ |+++++.
T Consensus 223 ~~d~~i~~~~~------~~~~~~~~~~l~~~------G~~v~~G 254 (329)
T TIGR02822 223 PLDAAILFAPA------GGLVPPALEALDRG------GVLAVAG 254 (329)
T ss_pred cceEEEECCCc------HHHHHHHHHhhCCC------cEEEEEe
Confidence 57877765443 23566667788888 6665544
No 288
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=88.22 E-value=3 Score=35.31 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=52.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+...|+|+|.-.|--.+..|..+ .++|+++|+ ....... .++.+. ...++++.+.+-.+ +..+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp-----~~~rI~~i~Gds~d--~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP-----MSPRITFIQGDSID--PEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSS--THHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc-----ccCceEEEECCCCC--HHHHHH
Confidence 46799999999888777776433 379999999 3221111 111111 24678888765544 222221
Q ss_pred c-----CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 179 V-----GREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 179 ~-----~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
. ..... +++-|.=|.....-..++....++++| .++++..
T Consensus 103 v~~~~~~~~~v-lVilDs~H~~~hvl~eL~~y~plv~~G-------~Y~IVeD 147 (206)
T PF04989_consen 103 VRELASPPHPV-LVILDSSHTHEHVLAELEAYAPLVSPG-------SYLIVED 147 (206)
T ss_dssp SGSS----SSE-EEEESS----SSHHHHHHHHHHT--TT--------EEEETS
T ss_pred HHHhhccCCce-EEEECCCccHHHHHHHHHHhCccCCCC-------CEEEEEe
Confidence 1 12233 444477777777888888899999987 6666543
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.12 E-value=4.2 Score=37.02 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~ 136 (282)
++.+||=+|||. |.+.+.+|+..+++|++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 578999999874 77777777777889999985
No 290
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.93 E-value=18 Score=33.46 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
...+|.+|||+.|..|.=++.+....- ..|++-|. +.-+..+...+..-. .....+.+.+-.......
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence 345688999999999998877664432 28999999 665555555443211 112222222211110000
Q ss_pred ---h-hhcCCCccEEEE-----cCccCCC-C-----------------CHHHHHHHHHHHHhcCCCCCCCceEEEEEEee
Q 023457 176 ---V-AVVGREFDVILA-----SDVVYHD-H-----------------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHL 228 (282)
Q Consensus 176 ---~-~~~~~~fD~Ii~-----sd~ly~~-~-----------------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~ 228 (282)
. +.....||-|++ .|..... . ..-.++..-.++|++| |.+++-.+..
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~G------G~lVYSTCSL 299 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVG------GRLVYSTCSL 299 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCC------CEEEEeccCC
Confidence 0 111347998886 2322210 0 1234666677899998 7877765543
Q ss_pred cCc---ccHHHHHHHHhhcCceEEEcccCCC
Q 023457 229 RRW---KKDSVFFKKAKKLFDVETIHADLPC 256 (282)
Q Consensus 229 ~~~---~~~~~f~~~~~~~f~ve~v~~~~~~ 256 (282)
... ...+..++.+...+.+..+..+.+.
T Consensus 300 npieNEaVV~~~L~~~~~~~~lv~~~~~lp~ 330 (375)
T KOG2198|consen 300 NPIENEAVVQEALQKVGGAVELVDVSGDLPG 330 (375)
T ss_pred CchhhHHHHHHHHHHhcCcccceeecccccc
Confidence 332 2345555555556666555555443
No 291
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.92 E-value=1.4 Score=40.69 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEehH
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDLP 137 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~~ 137 (282)
-..|+|+|+|.|.++-+++...+-.|.++|-.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 35899999999999999987778899999983
No 292
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=87.89 E-value=0.96 Score=39.10 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHh---cccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 107 LNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDA---NAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~---n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
.+|||.=||-|.=++.+| ..|++|++++. +-+..+++.-+.. +.........++++..-|-.+ -+......
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~----~L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE----YLRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC----HCCCHSS-
T ss_pred CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH----HHhhcCCC
Confidence 389999999999999998 56889999999 6554444433332 111000011356666544333 12233578
Q ss_pred ccEEEEcCccCC
Q 023457 183 FDVILASDVVYH 194 (282)
Q Consensus 183 fD~Ii~sd~ly~ 194 (282)
||+|.. |++|.
T Consensus 152 ~DVVY~-DPMFp 162 (234)
T PF04445_consen 152 FDVVYF-DPMFP 162 (234)
T ss_dssp -SEEEE---S--
T ss_pred CCEEEE-CCCCC
Confidence 999998 66664
No 293
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.25 E-value=2.5 Score=32.23 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhhc--CCCccEEEEcC
Q 023457 115 GTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAVV--GREFDVILASD 190 (282)
Q Consensus 115 GtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~~--~~~fD~Ii~sd 190 (282)
|.|+..+.+|+..+++|+++|. +.-++.+++. + .-..+++.+.+.. .+... ...+|+||-+-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----G----------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----G----------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----c----------ccccccccccccccccccccccccceEEEEec
Confidence 5688999999888999999999 7777777651 1 0122344442111 11111 24799998642
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 191 VVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 191 ~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
-....++....+++++ |+++++..+
T Consensus 67 ------g~~~~~~~~~~~l~~~------G~~v~vg~~ 91 (130)
T PF00107_consen 67 ------GSGDTLQEAIKLLRPG------GRIVVVGVY 91 (130)
T ss_dssp ------SSHHHHHHHHHHEEEE------EEEEEESST
T ss_pred ------CcHHHHHHHHHHhccC------CEEEEEEcc
Confidence 2356788888899998 666665543
No 294
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.24 E-value=5.7 Score=38.48 Aligned_cols=97 Identities=24% Similarity=0.341 Sum_probs=59.6
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC--------
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE-------- 172 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~-------- 172 (282)
..++.+|+=+|||. |+..+.+++..++.|+++|. +..++.++. +.. .+..++..+..
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 34578999999995 88888888888899999999 776666654 111 11111110000
Q ss_pred --ccc--------hhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 173 --AND--------VAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 173 --~~~--------~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+ +......+|+||.+-.+-......-+.+.+.+.+++|
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 000 1112357999998765544444444666677788887
No 295
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=86.89 E-value=12 Score=34.87 Aligned_cols=107 Identities=22% Similarity=0.149 Sum_probs=64.8
Q ss_pred ceeehhH-HHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhc
Q 023457 72 FKLWPAA-TTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDAN 150 (282)
Q Consensus 72 ~~~W~~a-~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n 150 (282)
.+.|+++ ..|.+++.... ..+ +||=|+=.-|.++..++. .+. ...+|.--.-..++.|+..|
T Consensus 25 l~awdaade~ll~~~~~~~--------------~~~-~~~i~nd~fGal~~~l~~-~~~-~~~~ds~~~~~~~~~n~~~n 87 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDTE--------------IRG-PVLILNDAFGALSCALAE-HKP-YSIGDSYISELATRENLRLN 87 (378)
T ss_pred ccccccHHHHHHHHHhhcc--------------cCC-CEEEEcCchhHHHHHHHh-CCC-CeeehHHHHHHHHHHHHHHc
Confidence 5799987 34444442211 112 799999999999999973 222 34467644456678899999
Q ss_pred ccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCC---CHHHHHHHHHHHHhcC
Q 023457 151 AGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDH---LFDPLLVTLRLFLNSG 212 (282)
Q Consensus 151 ~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~---~~~~ll~~l~~ll~~g 212 (282)
+.. ...+... +-. +.....+|+|+. |.++ ..+..+..+...+.++
T Consensus 88 ~~~----~~~~~~~--~~~-------~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~ 135 (378)
T PRK15001 88 GID----ESSVKFL--DST-------ADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSD 135 (378)
T ss_pred CCC----cccceee--ccc-------ccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCC
Confidence 852 1122222 111 112456999886 3333 3556677777788877
No 296
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.81 E-value=5.2 Score=32.15 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAG 152 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~ 152 (282)
.+..+.+|||+|-|.+-+.+++.+...-+++++ +-.+...+...-+.+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence 444689999999999999998665578899999 8777777666555553
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.69 E-value=1.2 Score=33.60 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~ 136 (282)
....+|||||.|++.-.+.+ -|-.=.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~-EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNS-EGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHh-CCCCcccccc
Confidence 44799999999999888864 3455667776
No 298
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=86.14 E-value=20 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 181 REFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 181 ~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+.||+|+.+-.+-....+-..+++|.++|+||
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 36999998854444556778899999999998
No 299
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.05 E-value=23 Score=33.98 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
....+++||-||.|-+++.+-..+...|.++|+ +.+.+.-+.|.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 446799999999999988875444456789999 87777777764
No 300
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.47 E-value=5 Score=35.19 Aligned_cols=41 Identities=34% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQF 145 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~~ 145 (282)
++.+||=+|+|+ |++.+.+|+..+.+ |+++|. +.-++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 578899999874 77777777777765 899998 665555544
No 301
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.31 E-value=2.4 Score=39.24 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=58.4
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhccccccc---CCCcEEEEEEEeCCCCccchh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISL---RGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~---~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..++....|||+|.|-+..++|...+ +.=+++.+ ...-+.+..|...+....+. ....+.....++.+ +....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~--~~~v~ 267 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD--PKRVT 267 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC--HHHHH
Confidence 34577899999999998877764443 34445555 33222222222222111000 12334444444444 22222
Q ss_pred hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 178 VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
......++|+++.+.+.++..-.+- .+..-+++|
T Consensus 268 eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 268 EIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred HHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCc
Confidence 3356789999999998876555444 444455555
No 302
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=84.95 E-value=26 Score=30.65 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCccceeehh-HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh
Q 023457 67 SQGLSFKLWPA-ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL 136 (282)
Q Consensus 67 ~~g~g~~~W~~-a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~ 136 (282)
..-+-.++|.. --.||.-|.--.+. .+..+|.+||=||+++|..--..+--.+ ..|++++.
T Consensus 126 ~~kvEyRVWnPfrSKLAA~I~gGvdn---------ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEf 189 (317)
T KOG1596|consen 126 DGKVEYRVWNPFRSKLAAGILGGVDN---------IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEF 189 (317)
T ss_pred CCcEEEEEeChHHHHHHHHhhcCccc---------eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEe
Confidence 33556799983 23444444222211 1566799999999999986544442333 57999998
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.65 E-value=5.2 Score=35.73 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNL 143 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~ 143 (282)
++.+||=+|||. |+..+.+|+..+++ |+++|. +.-++.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 467888889874 77888787777765 667887 6554444
No 304
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=84.18 E-value=21 Score=29.03 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=63.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccc
Q 023457 76 PAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLIS 155 (282)
Q Consensus 76 ~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~ 155 (282)
+++..|++.+.+.. ..+.+|+=|||=+-...+.-......+++..|+..-....
T Consensus 10 ~T~~~l~~~l~~~~--------------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~------------ 63 (162)
T PF10237_consen 10 ETAEFLARELLDGA--------------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF------------ 63 (162)
T ss_pred HHHHHHHHHHHHhc--------------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc------------
Confidence 35566777775543 2256899998866444443311234688999983211111
Q ss_pred cCCCcEEEEEEEeCCCCccchh-hcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 156 LRGGSVHVAPLRWGEAEANDVA-VVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 156 ~~~~~v~~~~ld~~~~~~~~~~-~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
... .+...|... +..++ ...++||+||+=.++...+-......+++.+++++
T Consensus 64 --~~~-~F~fyD~~~--p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~ 116 (162)
T PF10237_consen 64 --GGD-EFVFYDYNE--PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPG 116 (162)
T ss_pred --CCc-ceEECCCCC--hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCcc
Confidence 112 344555555 33333 22579999999777756666677788888888886
No 305
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=83.90 E-value=2 Score=37.46 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=29.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC---------CEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAILG---------AKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~---------~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+|+|+|+|+|.++.-++..+. .+++.++. +.+.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 36999999999999888775543 47999999 665555555443
No 306
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.64 E-value=3.4 Score=38.49 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=45.5
Q ss_pred CcEEEeCCCCCHHHHHHHHHh---C-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 107 LNILELGSGTGLVGMAAAAIL---G-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~---~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++||=|||| .+|..+|..+ + .+|++.|. .+-+..+..+. ..+++...+|..+ ...+.....
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------~~~v~~~~vD~~d--~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------GGKVEALQVDAAD--VDALVALIK 67 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------cccceeEEecccC--hHHHHHHHh
Confidence 479999995 3444433332 3 69999999 66666655432 2267778887776 333333456
Q ss_pred CccEEEEcCccC
Q 023457 182 EFDVILASDVVY 193 (282)
Q Consensus 182 ~fD~Ii~sd~ly 193 (282)
.+|+||.+-.-|
T Consensus 68 ~~d~VIn~~p~~ 79 (389)
T COG1748 68 DFDLVINAAPPF 79 (389)
T ss_pred cCCEEEEeCCch
Confidence 679999764433
No 307
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.62 E-value=17 Score=32.94 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=74.0
Q ss_pred hHHHHHHHHhhcCCCCCCCcccc-cCCCCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccc
Q 023457 77 AATTLVTLLDQFCSHPSNSPLAS-SLSNGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGL 153 (282)
Q Consensus 77 ~a~~La~~l~~~~~~~~~~~~~~-~~~~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~ 153 (282)
+++.-+.||++.... .+.+. ...-....+|.=||.|. |..+--+|.-+++.|+..|+ .+-+..+..-.
T Consensus 141 a~q~Ga~~lek~~GG---~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f------ 211 (371)
T COG0686 141 AAQAGAYYLEKTNGG---KGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF------ 211 (371)
T ss_pred HHHHHHHHHHhccCC---ceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh------
Confidence 456667787665421 11111 11334556788899885 77776666667899999999 66666554421
Q ss_pred cccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 154 ISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 154 ~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..++...- .. +..+...-.+.|+||++=.+-....+..+.+.+.+.++||
T Consensus 212 ----~~rv~~~~---st--~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 212 ----GGRVHTLY---ST--PSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred ----CceeEEEE---cC--HHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCC
Confidence 22333322 11 2233333568999999877766677777788888888887
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=82.89 E-value=13 Score=37.23 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=23.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-------C------CEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-------G------AKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-------~------~~V~~tD~ 136 (282)
.-+|+|+|=|+|+..+.+.+.. . -+++.++.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 4689999999999988776444 1 26788886
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.12 E-value=8.9 Score=35.15 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=+|+|. |...+.+|+..++ +|+++|. +.-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 4577888899864 6667777776676 6999998 776666643
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=81.85 E-value=8.9 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=29.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHH-h-CCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAI-L-GAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~-~-~~~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=+|||. |++.+.++++ . +++|+++|. +.-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 3578999999874 7766666654 3 468999998 66566654
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=81.63 E-value=9.2 Score=34.03 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=31.5
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..+.+||-.|+| .|...+.+|+..+.+|++++. +...+.++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346788888876 377777788777889999998 766666643
No 312
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.53 E-value=3.9 Score=36.00 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh------CCEEEEEeh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL------GAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~------~~~V~~tD~ 136 (282)
+...++|+|||.|.+|..++... ...++++|.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 45689999999999999998666 258999998
No 313
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.17 E-value=4.1 Score=31.70 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-Hh
Q 023457 80 TLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGL-VGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 80 ~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~ 138 (282)
.+|+|+.+... ..+|+|+|-|.=. ++..++ ..+..|++||+ +.
T Consensus 3 ~~a~~ia~~~~---------------~~kiVEVGiG~~~~vA~~L~-~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLNN---------------YGKIVEVGIGFNPEVAKKLK-ERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----------------SSEEEEET-TT--HHHHHHH-HHS-EEEEE-SS-S
T ss_pred hHHHHHHHhCC---------------CCcEEEECcCCCHHHHHHHH-HcCCcEEEEECccc
Confidence 46888865432 3399999999744 455554 55699999999 65
No 314
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=80.29 E-value=2.9 Score=40.96 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=38.8
Q ss_pred eehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-H
Q 023457 74 LWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-P 137 (282)
Q Consensus 74 ~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~ 137 (282)
.=++|+-|.+.-.++. ...++..||||||..|.+..++++.++ .-|+++|+ |
T Consensus 25 rsRsaFKLlQln~ky~------------fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYK------------FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred hHHHHHHHHHHHHHhc------------cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3356666666554443 235678999999999999999987765 68999998 5
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.13 E-value=5.1 Score=36.50 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=.|||. |...+.+|+..++ +|+++|. +.-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4578999899864 7777777777776 5999998 766666643
No 316
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=79.80 E-value=6.5 Score=35.94 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh-----------C------CEEEEEeh
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL-----------G------AKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~-----------~------~~V~~tD~ 136 (282)
...+|+|+||..|..++.+.... . -+|+..|+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDl 64 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDL 64 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCC
Confidence 45699999999999998876432 1 28999999
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.79 E-value=14 Score=31.40 Aligned_cols=41 Identities=34% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
.++.+||-+|+|. |...+.+++..+.+|++++. +...+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4578999999986 66666667667789999998 66555554
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.71 E-value=14 Score=33.12 Aligned_cols=41 Identities=32% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=+|+|. |...+.+|+..+++ |++++. ++-++.++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4578888898864 66667777777777 999998 66555554
No 319
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=78.14 E-value=8.7 Score=35.61 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
.++.+|+=+|+|. |......++..+++|+++|. +..++.+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 3567799999983 66666666667789999998 66555443
No 320
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.88 E-value=40 Score=28.20 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
++++||=.|++ |.+|..+++.+ +.+|++++. +.-++.+...+... .++.....|+.+ ...+.
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~--~~~~~~~~ 72 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSS--TESARNVI 72 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCC--HHHHHHHH
Confidence 47799999986 44454444333 579999998 65555443333221 235556667665 22111
Q ss_pred ----hcCCCccEEEEcCccC
Q 023457 178 ----VVGREFDVILASDVVY 193 (282)
Q Consensus 178 ----~~~~~fD~Ii~sd~ly 193 (282)
...+..|.|+.+-..+
T Consensus 73 ~~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 73 EKAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHHhCCCCEEEEcCCCc
Confidence 1124578888665443
No 321
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=77.55 E-value=4.2 Score=36.27 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.9
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
+++||-||.|.+++.+-..+...|.++|+ +.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 79999999999998886444367899999 888888887764
No 322
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.18 E-value=5.9 Score=36.03 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..+++||-||.|.+++.+...+-.-+.+.|+ +.++...+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 4589999999999998876444357889999 888888877654
No 323
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=77.12 E-value=55 Score=32.27 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=46.8
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccc--cCCCcEEEEEEEeCCCCccch
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLIS--LRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~--~~~~~v~~~~ld~~~~~~~~~ 176 (282)
...|++||=.|+. |.+|..+++.+ +.+|++++. ..-+..+...+....+... ....++.+...|..+ ...+
T Consensus 77 ~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--PDQI 153 (576)
T ss_pred cCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--HHHH
Confidence 3467788888774 55666665443 578999887 5544444333322111000 001246677777765 3333
Q ss_pred hhcCCCccEEEEcC
Q 023457 177 AVVGREFDVILASD 190 (282)
Q Consensus 177 ~~~~~~fD~Ii~sd 190 (282)
.......|+||.+-
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 33345689988763
No 324
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.66 E-value=43 Score=27.96 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++||=+|+ +|.+|..+++.+ +.+|++++. +..+..+...+.. ..++.+...|..+ ...+..
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~D~~~--~~~~~~~~ 73 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN--------KGNVLGLAADVRD--EADVQRAV 73 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc--------cCcEEEEEccCCC--HHHHHHHH
Confidence 4678998985 666666665443 578999998 6544444443332 1245556666554 222211
Q ss_pred -----cCCCccEEEEcCc
Q 023457 179 -----VGREFDVILASDV 191 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ 191 (282)
....+|+||.+..
T Consensus 74 ~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 74 DAIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246899987643
No 325
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.51 E-value=23 Score=27.19 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=44.5
Q ss_pred CcEEEeCCCCCH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCcc
Q 023457 107 LNILELGSGTGL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFD 184 (282)
Q Consensus 107 ~~VLELGcGtG~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD 184 (282)
++|.|+|.|-=+ ++-.++ ..+..|++||+ +. .+ ...+.+..-|..+. ..-
T Consensus 15 gkVvEVGiG~~~~VA~~L~-e~g~dv~atDI~~~---~a--------------~~g~~~v~DDitnP----------~~~ 66 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLA-ERGFDVLATDINEK---TA--------------PEGLRFVVDDITNP----------NIS 66 (129)
T ss_pred CcEEEEccchHHHHHHHHH-HcCCcEEEEecccc---cC--------------cccceEEEccCCCc----------cHH
Confidence 399999998643 344554 45689999999 54 11 12344444444431 122
Q ss_pred EEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 185 VILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 185 ~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
+-=.++.+|...-.+.+.+.+.++.+.=
T Consensus 67 iY~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 67 IYEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred HhhCccceeecCCCHHHHHHHHHHHHhh
Confidence 2223455555555666777776666543
No 326
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=75.23 E-value=51 Score=28.04 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+..+++||=.|+ +|.+|..+++.+ +.+|++++. +..++.+...+... ..++.....|..+ ...+..
T Consensus 7 ~~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------~~~~~~~~~D~~~--~~~~~~ 76 (255)
T PRK07523 7 DLTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-------GLSAHALAFDVTD--HDAVRA 76 (255)
T ss_pred CCCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CceEEEEEccCCC--HHHHHH
Confidence 456889998886 555566665443 578999998 65555554444432 1245555666655 222111
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
.....|+||.+-..
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 12468998876543
No 327
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=74.77 E-value=21 Score=32.58 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~ 136 (282)
.+|.+||=.|||. |...+.+|+..+++|++++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3577888899874 77778888777888988887
No 328
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.42 E-value=22 Score=29.39 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=22.6
Q ss_pred CccEEEEc-CccCC------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEe
Q 023457 182 EFDVILAS-DVVYH------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAH 227 (282)
Q Consensus 182 ~fD~Ii~s-d~ly~------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~ 227 (282)
..|++|.+ +.-+. ...+..+++.+...++++ .++++-++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~-------~lvV~~ST 121 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPG-------DLVVIEST 121 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSC-------EEEEESSS
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhc-------ceEEEccE
Confidence 46887765 22222 223677888888888886 65665544
No 329
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.17 E-value=55 Score=27.93 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=41.6
Q ss_pred CcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh----
Q 023457 107 LNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---- 178 (282)
++||=.|+ +|.+|..++.. .+.+|++++. +.-.+.+...+... ..++.+...|..+ ...+..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~--~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------GGEALVVPTDVSD--AEACERLIEA 71 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC--HHHHHHHHHH
Confidence 46776665 44556555433 3579999998 65544444444322 2345666666655 222111
Q ss_pred ---cCCCccEEEEcCcc
Q 023457 179 ---VGREFDVILASDVV 192 (282)
Q Consensus 179 ---~~~~fD~Ii~sd~l 192 (282)
..+..|+||.+-..
T Consensus 72 ~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 72 AVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12468999876433
No 330
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=73.86 E-value=6.3 Score=36.42 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||.+|||+ |...+.+|+..+. +|+++|. ++.++.+++
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 4578999999987 8888888877775 6999998 877777765
No 331
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.85 E-value=27 Score=29.45 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|| +|.+|..+++.+ +.+|++++. +..++.+...+...+ ...+.....|..+.....+..
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG------HPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC------CCCcceEEeeecccchHHHHHH
Confidence 45789999996 455565555443 578999998 665555544443321 123344556654321111110
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
....+|+||.+-.
T Consensus 77 ~~~i~~~~~~~id~vi~~ag 96 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHHHHHhCCCCCEEEEecc
Confidence 1146799886533
No 332
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=73.77 E-value=2.5 Score=39.35 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh----------------CCEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAIL----------------GAKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~----------------~~~V~~tD~ 136 (282)
..+|+|+|||+|..++.+.... .-+|...|+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDL 110 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDL 110 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Confidence 5689999999999887664221 147888998
No 333
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=73.31 E-value=2 Score=35.01 Aligned_cols=43 Identities=30% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..+..+|+=+|.|. |.-+..++..++++|+..|. +..++..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc
Confidence 34567999999985 77777777888999999999 776666544
No 334
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=73.29 E-value=30 Score=30.86 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
++.+||-.|||. |...+.+|+..+. +|++++. +...+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 678888888764 6666667766676 7999998 66666443
No 335
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.21 E-value=12 Score=34.96 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=38.8
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
..|+-..+.-+.|. ..++.+||=|.+| |-..+.++...+++|+++|+ +.-+.+++-++
T Consensus 19 ~~WEDp~vD~~aL~----------------i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 19 QCWEDPRVDMEALN----------------IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred cccCCcHHHHHHhC----------------CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 58998888888883 3457799999443 33333334466799999999 76444444333
No 336
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=72.55 E-value=26 Score=30.76 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=58.6
Q ss_pred cEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-chhh--c-CCCc
Q 023457 108 NILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DVAV--V-GREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~~~--~-~~~f 183 (282)
.|+.||||-=.-...+....+..++=+|.|++++.=++.+..++.. ...+......|+.+ +.. .+.. . ....
T Consensus 84 qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~~-~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 84 QVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---PPAHRRAVPVDLRQ-DWPAALAAAGFDPTAP 159 (260)
T ss_pred EEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---CCCceEEeccCchh-hHHHHHHhCCCCCCCC
Confidence 6999999975555444211124666667788888777777654421 13445555555441 111 1111 1 1234
Q ss_pred cEEEEcCccCC--CCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYH--DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~--~~~~~~ll~~l~~ll~~g 212 (282)
-++++-.++++ .+....+++.|..+..+|
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~g 190 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPG 190 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCC
Confidence 46666666654 345778999998887776
No 337
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=71.63 E-value=4.6 Score=36.47 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=40.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCC
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGE 170 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~ 170 (282)
.++..++|.=-|.|-.+..++..++ .+|++.|. +.+++.+++++... .+++.+....+.+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSN 80 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGG
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHH
Confidence 4577999999999999988886654 89999999 99999988766532 3455555544443
No 338
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=71.44 E-value=12 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=27.0
Q ss_pred EeCCCCC--HHHHHHH-HHh--CCEEEEEeh-HhHHHHHHHH--HHhcc
Q 023457 111 ELGSGTG--LVGMAAA-AIL--GAKVTVTDL-PHVLTNLQFN--VDANA 151 (282)
Q Consensus 111 ELGcGtG--~~si~la-~~~--~~~V~~tD~-~~~l~~~~~n--~~~n~ 151 (282)
|+||..| ......+ +.. ..+|+++|. +..++.++.| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 7999999 4444332 122 478999999 9999999999 77663
No 339
>PRK07904 short chain dehydrogenase; Provisional
Probab=71.41 E-value=62 Score=27.76 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh----CCEEEEEeh-HhH-HHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-c-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL----GAKVTVTDL-PHV-LTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-D- 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~----~~~V~~tD~-~~~-l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~- 175 (282)
..+++||=.||+.|+ |..+++.+ +.+|++++. +.- ++.+.+.+...+ ..++.+..+|..+...- .
T Consensus 6 ~~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 6 GNPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------ASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------CCceEEEEecCCChHHHHHH
Confidence 346789999996544 54444332 479999988 543 555544444322 22566777777652210 0
Q ss_pred hhhc--CCCccEEEEcC
Q 023457 176 VAVV--GREFDVILASD 190 (282)
Q Consensus 176 ~~~~--~~~fD~Ii~sd 190 (282)
.... ....|+++.+-
T Consensus 79 ~~~~~~~g~id~li~~a 95 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHhcCCCCEEEEee
Confidence 1110 24789888643
No 340
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=71.19 E-value=5.1 Score=36.24 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=46.6
Q ss_pred EEeCCCCCHHHHHHH---HHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCC-ccchhh-cCCCc
Q 023457 110 LELGSGTGLVGMAAA---AILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAE-ANDVAV-VGREF 183 (282)
Q Consensus 110 LELGcGtG~~si~la---~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~-~~~~~~-~~~~f 183 (282)
+|||.| ...|..+ ...+-..++||+ ...+..+..|+..|++ ...+.+....-.... ...+.. ....|
T Consensus 107 iDIgtg--asci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----ss~ikvV~~~~~ktll~d~~~~~~e~~y 179 (419)
T KOG2912|consen 107 IDIGTG--ASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----SSLIKVVKVEPQKTLLMDALKEESEIIY 179 (419)
T ss_pred eeccCc--hhhhHHhhhchhccceeeeeeccccccchhhcccccccc-----ccceeeEEecchhhcchhhhccCcccee
Confidence 577655 4444443 222357899999 7789999999999986 334444332111100 001111 13469
Q ss_pred cEEEEcCccCCC
Q 023457 184 DVILASDVVYHD 195 (282)
Q Consensus 184 D~Ii~sd~ly~~ 195 (282)
|+..++.++|..
T Consensus 180 dFcMcNPPFfe~ 191 (419)
T KOG2912|consen 180 DFCMCNPPFFEN 191 (419)
T ss_pred eEEecCCchhhc
Confidence 999999998854
No 341
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=71.17 E-value=25 Score=31.70 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=40.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
.++...+|.--|.|-.+-.+...++ ++++++|. +.+++.+++....+.
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 4468999999999999988887776 68999999 999999998886543
No 342
>PTZ00357 methyltransferase; Provisional
Probab=71.02 E-value=32 Score=34.72 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=59.2
Q ss_pred CcEEEeCCCCCHHHH---HHHHHhC--CEEEEEeh-HhHHHHHHHHHHhcccccc----cCCCcEEEEEEEeCCCCccc-
Q 023457 107 LNILELGSGTGLVGM---AAAAILG--AKVTVTDL-PHVLTNLQFNVDANAGLIS----LRGGSVHVAPLRWGEAEAND- 175 (282)
Q Consensus 107 ~~VLELGcGtG~~si---~la~~~~--~~V~~tD~-~~~l~~~~~n~~~n~~~~~----~~~~~v~~~~ld~~~~~~~~- 175 (282)
..|+=+|||-|.+-- .+++..+ .+|++++- +.....+..+...+. ... .+.++|++..-|...+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCcccccccccc
Confidence 368999999998743 3333333 47899998 664434333321111 110 12456888888877653221
Q ss_pred -----hhhcCCCccEEEEc--CccCCCCCHHHHHHHHHHHHhc
Q 023457 176 -----VAVVGREFDVILAS--DVVYHDHLFDPLLVTLRLFLNS 211 (282)
Q Consensus 176 -----~~~~~~~fD~Ii~s--d~ly~~~~~~~ll~~l~~ll~~ 211 (282)
.+..-+++|+||+- ..+-+-+.-+.-|.-+.+.|++
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 11112479998862 2333445566777777777765
No 343
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=70.71 E-value=24 Score=30.80 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred CCCccceeehh---HHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHH
Q 023457 67 SQGLSFKLWPA---ATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLT 141 (282)
Q Consensus 67 ~~g~g~~~W~~---a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~ 141 (282)
..|++ ++|.. ...|..|+...... +.+.. +..=.|...++..... .-+.++.|+ +.-.+
T Consensus 30 ~~GI~-rl~~~~~~p~~l~~yl~~v~~~------------n~~~~---l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~ 93 (245)
T PF04378_consen 30 QDGIG-RLWAAQDLPPALQPYLDAVRAL------------NPDGE---LRFYPGSPAIAARLLREQDRLVLFELHPQDFE 93 (245)
T ss_dssp GGTHH-HHHTGGGS-GGGHHHHHHHHHH------------SSSSS-----EEE-HHHHHHHHS-TTSEEEEE--SHHHHH
T ss_pred HHHHH-HHHhCCcchHHHHHHHHHHHHh------------ccCCC---cCcCCCCHHHHHHhCCccceEEEEecCchHHH
Confidence 34665 67765 35677787543210 01111 3344677777664322 358999999 99999
Q ss_pred HHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceE
Q 023457 142 NLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKM 221 (282)
Q Consensus 142 ~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~ 221 (282)
.++.|+.. ..++.+...|=-.. ...+-.+..+--+|++-.......+++.++.++...++.-+ .++
T Consensus 94 ~L~~~~~~--------~~~v~v~~~DG~~~-l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~-----~G~ 159 (245)
T PF04378_consen 94 ALKKNFRR--------DRRVRVHHRDGYEG-LKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWP-----TGV 159 (245)
T ss_dssp HHTTS--T--------TS-EEEE-S-HHHH-HHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-T-----TSE
T ss_pred HHHHHhcc--------CCccEEEeCchhhh-hhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcC-----CcE
Confidence 99887764 23566665321110 00011112334466664445567789999999999998653 466
Q ss_pred EEEEEeecCcccHHHHHHHHhh
Q 023457 222 NFVMAHLRRWKKDSVFFKKAKK 243 (282)
Q Consensus 222 ~il~~~~~~~~~~~~f~~~~~~ 243 (282)
+++.+........+.|.+.+.+
T Consensus 160 ~~iWYPi~~~~~~~~~~~~l~~ 181 (245)
T PF04378_consen 160 YAIWYPIKDRERVDRFLRALKA 181 (245)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeecccHHHHHHHHHHHHh
Confidence 7777777666667788887764
No 344
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=69.82 E-value=35 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-Hh
Q 023457 105 CQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~ 138 (282)
++.+||=.|||. |...+.+|+..+++|++++. ++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 577888889874 77777788778889999987 44
No 345
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=69.69 E-value=8.4 Score=33.25 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=28.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 105 CQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
...+++|+-||+|.+++.+.. .+..|++-|+ +.+....+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHH
Confidence 477999999999999998853 5789999999 65544444
No 346
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.52 E-value=40 Score=28.77 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
+..++++||=.|+ +|.+|..+++.+ +.+|++++. ..-++.+...+... ..++.+...|+.+ ...+.
T Consensus 8 ~~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------~~~~~~~~~Dl~d--~~~i~ 77 (259)
T PRK08213 8 FDLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------GIDALWIAADVAD--EADIE 77 (259)
T ss_pred hCcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEccCCC--HHHHH
Confidence 4456889999995 566676666444 578999998 65555555444432 2345566666665 22221
Q ss_pred -------hcCCCccEEEEcCc
Q 023457 178 -------VVGREFDVILASDV 191 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd~ 191 (282)
......|.||.+-.
T Consensus 78 ~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 78 RLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 11246899987643
No 347
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=68.73 E-value=36 Score=30.67 Aligned_cols=41 Identities=37% Similarity=0.537 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~ 144 (282)
.++.+||=+|||+ |...+.+|+..+.+ |++++. ++-++.++
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3577899999875 77777777777775 788987 66665553
No 348
>PRK06949 short chain dehydrogenase; Provisional
Probab=68.70 E-value=56 Score=27.71 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=46.7
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+++||=.|+ +|.+|..++..+ +.+|++++. ++.++.+...+... ..++.+...|..+ ..++..
T Consensus 6 ~~~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~~~~ 75 (258)
T PRK06949 6 NLEGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------GGAAHVVSLDVTD--YQSIKA 75 (258)
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEecCCC--HHHHHH
Confidence 345789999984 455555555443 578999998 66665555544321 2245666666655 222211
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
..+..|+||.+-.
T Consensus 76 ~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 76 AVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 1246899887644
No 349
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=68.32 E-value=57 Score=30.92 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=26.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-Hh
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~ 138 (282)
..|++|+=+|+|. |......++..+++|+++|. +.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 4689999999985 55555555566789999998 54
No 350
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.79 E-value=10 Score=35.79 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
..|++|+=+|||. |......++..+++|+++|. +.-+..++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 4699999999996 77777777777889999999 65555443
No 351
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.76 E-value=10 Score=34.33 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=+|||. |...+.+|+..+.+|+++|. ++-++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4588999999975 77777777777889999998 776666643
No 352
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.70 E-value=39 Score=30.47 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=51.2
Q ss_pred cEEEeCCCC--CHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCccE
Q 023457 108 NILELGSGT--GLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREFDV 185 (282)
Q Consensus 108 ~VLELGcGt--G~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~fD~ 185 (282)
+|+=+|||. |+++..+++. +..|+.+-.++.++.++++ ++.+.............. ........+|+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~~~~l~~~----GL~i~~~~~~~~~~~~~~------~~~~~~~~~Dl 70 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRRLEALKKK----GLRIEDEGGNFTTPVVAA------TDAEALGPADL 70 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHHHHHHHhC----CeEEecCCCccccccccc------cChhhcCCCCE
Confidence 678889985 5667777644 4666666665446666553 332221111101111100 11112357999
Q ss_pred EEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 186 ILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 186 Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
||.+- ..-+.+.+++.+..++++.
T Consensus 71 viv~v---Ka~q~~~al~~l~~~~~~~ 94 (307)
T COG1893 71 VIVTV---KAYQLEEALPSLAPLLGPN 94 (307)
T ss_pred EEEEe---ccccHHHHHHHhhhcCCCC
Confidence 99742 2236788999999999887
No 353
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=67.44 E-value=5.9 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=23.2
Q ss_pred CccEEEEcCccCC------CCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYH------DHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~------~~~~~~ll~~l~~ll~~g 212 (282)
+||+|+|-.+.=+ .+-+..+++.+..+|+||
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pG 37 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPG 37 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCC
Confidence 4899999777532 345778999999999998
No 354
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.26 E-value=52 Score=29.22 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCCcEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=.|+ | .|...+.+|+..+.+|++++. ++-.+.++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46789998885 3 588888888888889999987 66555554
No 355
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.75 E-value=46 Score=28.23 Aligned_cols=76 Identities=25% Similarity=0.237 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-cC
Q 023457 106 QLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-VG 180 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-~~ 180 (282)
+++||=.|++. .+|..+++. .+.+|++++. +.-...++...... ...+.+...|+.+ ...+.. ..
T Consensus 2 ~~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~~ 71 (257)
T PRK09291 2 SKTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------GLALRVEKLDLTD--AIDRAQAAE 71 (257)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcceEEEeeCCC--HHHHHHHhc
Confidence 35788888754 445555433 3578999887 55444444333322 2246677778776 322222 23
Q ss_pred CCccEEEEcCc
Q 023457 181 REFDVILASDV 191 (282)
Q Consensus 181 ~~fD~Ii~sd~ 191 (282)
...|+||.+-.
T Consensus 72 ~~id~vi~~ag 82 (257)
T PRK09291 72 WDVDVLLNNAG 82 (257)
T ss_pred CCCCEEEECCC
Confidence 47899997643
No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=66.61 E-value=44 Score=28.21 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=41.4
Q ss_pred CcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh----
Q 023457 107 LNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---- 178 (282)
++|+=.|+ +|.+|..+++.+ +.+|++++. +.-.+.+..++.... ..++.+...|..+ ..++..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~--~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG------AVAVSTHELDILD--TASHAAFLDS 72 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------CCeEEEEecCCCC--hHHHHHHHHH
Confidence 46777775 455566555444 578999998 554444433333221 2356666666655 222211
Q ss_pred cCCCccEEEEcC
Q 023457 179 VGREFDVILASD 190 (282)
Q Consensus 179 ~~~~fD~Ii~sd 190 (282)
....+|+++.+-
T Consensus 73 ~~~~~d~vv~~a 84 (243)
T PRK07102 73 LPALPDIVLIAV 84 (243)
T ss_pred HhhcCCEEEECC
Confidence 123579888653
No 357
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=66.58 E-value=50 Score=27.93 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch--
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV-- 176 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~-- 176 (282)
..++++||=.|+ +|.+|..+++.+ +.+|+++|. ...++.+...+...+ ..++.+...|....+..++
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG------GPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEecccCCCHHHHHH
Confidence 356889999995 556666555443 579999998 655555544443322 1234444444432111111
Q ss_pred -----hhcCCCccEEEEcC
Q 023457 177 -----AVVGREFDVILASD 190 (282)
Q Consensus 177 -----~~~~~~fD~Ii~sd 190 (282)
....++.|.||.+-
T Consensus 82 ~~~~~~~~~~~id~vi~~A 100 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 11124689988754
No 358
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.43 E-value=49 Score=29.78 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.++.+||=.|+|. |...+.+|+..+. .|+++|. ++-++.++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4578899888763 6666777766676 6999998 66555554
No 359
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.07 E-value=9.8 Score=34.37 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.9
Q ss_pred EEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 109 ILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
|+||-||.|.+++.+-..+-..+.++|+ +.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 6899999999998885433245668999 888888887753
No 360
>PRK06125 short chain dehydrogenase; Provisional
Probab=64.82 E-value=60 Score=27.67 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-- 177 (282)
..+++||=.|++.| +|..++.. .+.+|++++. ++.++.+...+.... ..++.+...|..+ ...+.
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~--~~~~~~~ 75 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------GVDVAVHALDLSS--PEAREQL 75 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEecCCC--HHHHHHH
Confidence 35789999997554 44444433 3579999998 665555554443321 2345666666665 22221
Q ss_pred -hcCCCccEEEEcCc
Q 023457 178 -VVGREFDVILASDV 191 (282)
Q Consensus 178 -~~~~~fD~Ii~sd~ 191 (282)
...+..|++|.+-.
T Consensus 76 ~~~~g~id~lv~~ag 90 (259)
T PRK06125 76 AAEAGDIDILVNNAG 90 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 11356899887644
No 361
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.50 E-value=88 Score=26.50 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=47.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...+++||=.|++.|+ |..+++.+ +.+|++++. ++.++.+...+... ..++.+...|..+ ...+..
T Consensus 8 ~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~ 77 (256)
T PRK06124 8 SLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA-------GGAAEALAFDIAD--EEAVAA 77 (256)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEccCCC--HHHHHH
Confidence 3568899988875544 55544333 689999998 66555555544432 2345666667665 222211
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
..++.|.||.+-.
T Consensus 78 ~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 78 AFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 1246799987644
No 362
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=64.27 E-value=46 Score=28.06 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=43.5
Q ss_pred CcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccch------
Q 023457 107 LNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV------ 176 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~------ 176 (282)
++||=.|+ +|.+|..+++.+ +.+|++++. +...+.+...+... ..++.+...|+.+ ...+
T Consensus 2 ~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~~~ 71 (255)
T TIGR01963 2 KTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------GGSVIYLVADVTK--EDEIADMIAA 71 (255)
T ss_pred CEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEECCCCC--HHHHHHHHHH
Confidence 46777774 466666666443 568999998 65555554433322 2356667777766 3211
Q ss_pred -hhcCCCccEEEEcCc
Q 023457 177 -AVVGREFDVILASDV 191 (282)
Q Consensus 177 -~~~~~~fD~Ii~sd~ 191 (282)
.......|+||.+-.
T Consensus 72 ~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 72 AAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHhcCCCCEEEECCC
Confidence 111346898887643
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=64.21 E-value=12 Score=34.44 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+|||. |...+.+|+..++ +|+++|. ++-++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4578999999874 7777777777777 6999998 776666654
No 364
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=64.06 E-value=18 Score=32.61 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=33.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh------------C---------CEEEEEeh---HhHHHHHHHHHHhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL------------G---------AKVTVTDL---PHVLTNLQFNVDAN 150 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~------------~---------~~V~~tD~---~~~l~~~~~n~~~n 150 (282)
+..+||-||.|.|.--+++|... . -.|+++|+ ..++..+...+..+
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~ 155 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSP 155 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCC
Confidence 45799999999987555444333 0 27999999 36888888887766
No 365
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=64.03 E-value=68 Score=27.19 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhC--CEEEEE
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILG--AKVTVT 134 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~--~~V~~t 134 (282)
.+|.+|+|+=-|.|..+..++...+ ..|++.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~ 79 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEe
Confidence 4688999999999999988876655 345544
No 366
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.93 E-value=24 Score=32.03 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCCCcEEEeCC--CCCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGS--GTGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGc--GtG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=.|+ |.|...+.+|+..++.++++-. ++-.+.++
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~ 184 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK 184 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH
Confidence 45889999985 4578888999888766666665 54344443
No 367
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.46 E-value=37 Score=28.58 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++||=.|+ +|.+|..+++.+ +.+|++++. +..+..+...+... ...+.+...|+.+ ...+..
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~--~~~~~~~~ 74 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------GGKARARQVDVRD--RAALKAAV 74 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC--HHHHHHHH
Confidence 4678997776 456666665443 578999988 55444444444332 2246666777765 222211
Q ss_pred -----cCCCccEEEEcCccC
Q 023457 179 -----VGREFDVILASDVVY 193 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ly 193 (282)
....+|+|+.+-..+
T Consensus 75 ~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 124689988765443
No 368
>PRK08339 short chain dehydrogenase; Provisional
Probab=63.15 E-value=68 Score=27.63 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=45.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++++|=.|++.|+ |..+++. .+.+|++++. ..-++.+...+.... ..++.+...|..+ .......
T Consensus 6 l~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~--~~~i~~~ 76 (263)
T PRK08339 6 LSGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSES------NVDVSYIVADLTK--REDLERT 76 (263)
T ss_pred CCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEecCCC--HHHHHHH
Confidence 458889988887655 4444433 3579999998 665555555443211 2345666667665 2222111
Q ss_pred ------CCCccEEEEcC
Q 023457 180 ------GREFDVILASD 190 (282)
Q Consensus 180 ------~~~fD~Ii~sd 190 (282)
.+..|+++.+-
T Consensus 77 ~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 77 VKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHhhCCCcEEEECC
Confidence 24689888654
No 369
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.06 E-value=74 Score=28.61 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCCCCCcEEEeCCCCCH---HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 102 SNGCQLNILELGSGTGL---VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~---~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
.+..|+.||==|+|.|+ .++.+| +.+++++..|+ .+..+...+.+..+| .+....-|..+ .+++.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~g--------~~~~y~cdis~--~eei~ 102 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKIG--------EAKAYTCDISD--REEIY 102 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhcC--------ceeEEEecCCC--HHHHH
Confidence 45779999999999987 355555 34579999999 666555555555433 34444445444 22221
Q ss_pred -------hcCCCccEEEEc
Q 023457 178 -------VVGREFDVILAS 189 (282)
Q Consensus 178 -------~~~~~fD~Ii~s 189 (282)
..-+..|++|-+
T Consensus 103 ~~a~~Vk~e~G~V~ILVNN 121 (300)
T KOG1201|consen 103 RLAKKVKKEVGDVDILVNN 121 (300)
T ss_pred HHHHHHHHhcCCceEEEec
Confidence 224678888865
No 370
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=63.06 E-value=15 Score=33.71 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=32.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
..+.+||=.|||. |...+.+|+..++ +|+++|. ++-++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4578899999874 7777777777777 7999998 776666644
No 371
>PRK06139 short chain dehydrogenase; Provisional
Probab=62.08 E-value=61 Score=29.35 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++.|+ |..+++. .+.+|++++. ++.++.+.+.+...+ ..+.+...|..+ .+.+..
T Consensus 5 l~~k~vlITGAs~GI-G~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~d--~~~v~~~ 74 (330)
T PRK06139 5 LHGAVVVITGASSGI-GQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------AEVLVVPTDVTD--ADQVKAL 74 (330)
T ss_pred CCCCEEEEcCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCC--HHHHHHH
Confidence 457889988886544 4444333 3578999998 776766666555432 345666677765 222211
Q ss_pred ------cCCCccEEEEcCc
Q 023457 179 ------VGREFDVILASDV 191 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~ 191 (282)
..+.+|++|.+-.
T Consensus 75 ~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 1257899987643
No 372
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=61.95 E-value=13 Score=32.75 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=30.2
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHh
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPH 138 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~ 138 (282)
....++.+.||-+|||.+|-.+- +.+..|++-|+..
T Consensus 24 ~~~s~k~f~DiFaGtGVV~~~fk-k~~n~iiaNDle~ 59 (330)
T COG3392 24 EDLSGKIFCDIFAGTGVVGRFFK-KAGNKIIANDLEY 59 (330)
T ss_pred cccCCCeeeeeccCccHHHHHHH-HhcchhhhchHHH
Confidence 34668899999999999999984 6678999999843
No 373
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=61.85 E-value=42 Score=26.01 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..++++||=||+|- |...+..+...+ .+|+.+.. .+-.+.+...+. ...+ ....|.+ +...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~---------~~~~--~~~~~~~-----~~~~ 72 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG---------GVNI--EAIPLED-----LEEA 72 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT---------GCSE--EEEEGGG-----HCHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC---------cccc--ceeeHHH-----HHHH
Confidence 45799999999973 333333333334 56999998 544444433331 1122 3334444 2222
Q ss_pred CCCccEEEEcCccCCC
Q 023457 180 GREFDVILASDVVYHD 195 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~ 195 (282)
...+|+||.+-..-..
T Consensus 73 ~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 73 LQEADIVINATPSGMP 88 (135)
T ss_dssp HHTESEEEE-SSTTST
T ss_pred HhhCCeEEEecCCCCc
Confidence 3579999987555433
No 374
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=61.31 E-value=74 Score=28.90 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVL 140 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l 140 (282)
.+|.+||=+|+|. |...+.+|+..+.+|++++. ++-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~ 217 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR 217 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 3577888888764 77777777777788888876 5433
No 375
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=61.09 E-value=1e+02 Score=28.54 Aligned_cols=42 Identities=38% Similarity=0.536 Sum_probs=28.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~~ 145 (282)
.++.+||=.|+|. |...+.+|+..+++ |+++|. +.-++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3466777788874 77777777666765 566777 666666654
No 376
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=61.03 E-value=41 Score=32.78 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHH---hC--CEEEEEeh-HhHHHHHHH-HHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 106 QLNILELGSGTGLVGMAAAAI---LG--AKVTVTDL-PHVLTNLQF-NVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~---~~--~~V~~tD~-~~~l~~~~~-n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
-.+|+=+|+|-|.+.-...+. .. -++++++- |.++-.++. |.+. |..+|++..-|...+.+.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-------W~~~Vtii~~DMR~w~ap---- 436 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-------WDNRVTIISSDMRKWNAP---- 436 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-------hcCeeEEEeccccccCCc----
Confidence 446888999999986554422 22 37899999 877665543 3332 677899888887774321
Q ss_pred cCCCccEEEEc--CccCCCCCHHHHHHHHHHHHhcC
Q 023457 179 VGREFDVILAS--DVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 179 ~~~~fD~Ii~s--d~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..+.|+|++- ..+-+-+.-+.-+.-+.++|++.
T Consensus 437 -~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 437 -REQADIIVSELLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred -hhhccchHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence 3578987752 22334456677888889999997
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=60.97 E-value=71 Score=27.02 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|++.| +|..+++.+ +.+|++++. +.-++.+...+... ..++.+...|..+ ...+..
T Consensus 5 l~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~i~~~ 74 (253)
T PRK06172 5 FSGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------GGEALFVACDVTR--DAEVKAL 74 (253)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCC--HHHHHHH
Confidence 35789999997554 444444333 578999998 65555444444332 2346666667665 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..+++|+||.+-..
T Consensus 75 ~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 75 VEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 12467999976443
No 378
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=60.73 E-value=63 Score=28.91 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=48.9
Q ss_pred CcEEEeCCCC--CHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 107 LNILELGSGT--GLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 107 ~~VLELGcGt--G~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
++|+=||||. |+++-.++ +.+..|++++. .+-++.++++ +++.... ............. ....+.|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~-~g~~~~~~~~~~~------~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQRLAAYQQA---GGLTLVE-QGQASLYAIPAET------ADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechHHHHHHhhc---CCeEEee-CCcceeeccCCCC------ccccccc
Confidence 4788899985 55666665 44678999998 6656655542 2221110 0110010110011 1113579
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+||.+-=- .+.+..++.+..++.++
T Consensus 72 D~viv~vK~---~~~~~al~~l~~~l~~~ 97 (305)
T PRK05708 72 HRLLLACKA---YDAEPAVASLAHRLAPG 97 (305)
T ss_pred CEEEEECCH---HhHHHHHHHHHhhCCCC
Confidence 999874211 13556777777777776
No 379
>PRK08324 short chain dehydrogenase; Validated
Probab=60.68 E-value=87 Score=31.49 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++. .+|..+++. .+.+|+++|. +.-++.+...+.. ...+.+...|..+ ...+..
T Consensus 420 l~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~--------~~~v~~v~~Dvtd--~~~v~~~ 488 (681)
T PRK08324 420 LAGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG--------PDRALGVACDVTD--EAAVQAA 488 (681)
T ss_pred CCCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc--------cCcEEEEEecCCC--HHHHHHH
Confidence 4678899888743 344444433 3579999998 6555544433321 1245566666655 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..+.+|+||.+-.+
T Consensus 489 ~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 12468999876443
No 380
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.62 E-value=62 Score=28.93 Aligned_cols=40 Identities=33% Similarity=0.343 Sum_probs=28.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-HhHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PHVLTNL 143 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~~l~~~ 143 (282)
..+++|+=||+|. |...+..++..+++|+++|. +.....+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI 191 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4588999999974 55555555556789999999 6544443
No 381
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=60.62 E-value=34 Score=30.56 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.++.+||-.|+| .|...+.+|+..+. .|++++. +...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 357788888775 36666777777774 8888887 655555543
No 382
>PRK07814 short chain dehydrogenase; Provisional
Probab=60.54 E-value=64 Score=27.67 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|+ +|.+|..+++.+ +.+|++++. ++.++.+.+.+... ..++.+...|..+ ...+..
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~~~~~ 77 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------GRRAHVVAADLAH--PEATAGL 77 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC--HHHHHHH
Confidence 45789999986 455555555433 579999998 65555554444321 2345666666665 222211
Q ss_pred ------cCCCccEEEEcC
Q 023457 179 ------VGREFDVILASD 190 (282)
Q Consensus 179 ------~~~~fD~Ii~sd 190 (282)
..+++|+||.+-
T Consensus 78 ~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 78 AGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 124689998753
No 383
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.94 E-value=51 Score=27.67 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++||=.|+ +|.+|..+++.+ +.+|++++. +.-++.+...+... ..++.+...|..+ ...+..
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 75 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------GVKVVIATADVSD--YEEVTAAI 75 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------CCeEEEEECCCCC--HHHHHHHH
Confidence 4678888885 666776665443 579999998 65444443333321 2345555655544 222111
Q ss_pred -----cCCCccEEEEcC
Q 023457 179 -----VGREFDVILASD 190 (282)
Q Consensus 179 -----~~~~fD~Ii~sd 190 (282)
.....|+||.+-
T Consensus 76 ~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 76 EQLKNELGSIDILINNA 92 (239)
T ss_pred HHHHHHcCCccEEEEcC
Confidence 124689998764
No 384
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=59.85 E-value=60 Score=28.64 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=31.3
Q ss_pred CCCCcEEEeCC--CCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGS--GTGLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGc--GtG~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=.|+ |.|...+.+|+..+.+|++++. ++-.+.+++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45788988885 3577778888888889999987 666666654
No 385
>PRK07576 short chain dehydrogenase; Provisional
Probab=59.82 E-value=74 Score=27.34 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=42.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|+ +|.+|..+++. .+.+|++++. ++-+......+... ..++.+..+|..+ ...+..
T Consensus 7 ~~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~--~~~i~~~ 76 (264)
T PRK07576 7 FAGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------GPEGLGVSADVRD--YAAVEAA 76 (264)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------CCceEEEECCCCC--HHHHHHH
Confidence 45789998886 44445444433 3578999998 65444443333321 2244556666654 222211
Q ss_pred ------cCCCccEEEEcC
Q 023457 179 ------VGREFDVILASD 190 (282)
Q Consensus 179 ------~~~~fD~Ii~sd 190 (282)
....+|++|.+-
T Consensus 77 ~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 77 FAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 124689998653
No 386
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.61 E-value=59 Score=27.89 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCCCCcEEEeCCCCC-HHHHHHHHHh---CCEEEEEeh-HhHH
Q 023457 103 NGCQLNILELGSGTG-LVGMAAAAIL---GAKVTVTDL-PHVL 140 (282)
Q Consensus 103 ~~~g~~VLELGcGtG-~~si~la~~~---~~~V~~tD~-~~~l 140 (282)
..+++++|=.|++.| -+|..+|+.+ +++|++++. ....
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~ 49 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR 49 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH
Confidence 456889999998762 5566665443 578999988 5433
No 387
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=59.43 E-value=8.2 Score=31.48 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHH-HHHHHHHHhcccccccCCCcEE-EEEEEeCCCCccchhhcCCC
Q 023457 106 QLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVL-TNLQFNVDANAGLISLRGGSVH-VAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l-~~~~~n~~~n~~~~~~~~~~v~-~~~ld~~~~~~~~~~~~~~~ 182 (282)
+++++=+|+..=.+-..+.+.++++|+.+++ +--+ +..+. ++. +...++.. +......+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d--------------r~ssi~p~df~~----~~~~y~~~ 63 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD--------------RLSSILPVDFAK----NWQKYAGS 63 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc--------------ccccccHHHHHH----HHHHhhcc
Confidence 6788888888666555554566678988887 3110 00110 100 00011111 11122567
Q ss_pred ccEEEEcCccCCCC-----------CHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 183 FDVILASDVVYHDH-----------LFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 183 fD~Ii~sd~ly~~~-----------~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
||++.+...+.|.. -....+..++++|++| |.+++.++
T Consensus 64 fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~G------G~L~l~vP 112 (177)
T PF03269_consen 64 FDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPG------GLLFLGVP 112 (177)
T ss_pred chhhheechhccccccccCCCCCccccHHHHHHHHHhhccC------CeEEEEee
Confidence 99988877765432 2345677889999998 55555443
No 388
>PRK05867 short chain dehydrogenase; Provisional
Probab=59.41 E-value=1.1e+02 Score=25.92 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...++++|=.|++.|+ |..+++.+ +.+|++++. .+.++.+...+... ..++.....|..+ ......
T Consensus 6 ~~~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~~~~ 75 (253)
T PRK05867 6 DLHGKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-------GGKVVPVCCDVSQ--HQQVTS 75 (253)
T ss_pred cCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEEccCCC--HHHHHH
Confidence 3468899999986554 44444333 579999998 66565555544432 2245556666655 222111
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
..++.|++|.+-.+
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 12478999876443
No 389
>PRK09242 tropinone reductase; Provisional
Probab=59.36 E-value=86 Score=26.62 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=46.3
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA- 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~- 177 (282)
..+++++|=.|++.|+ |..++.. .+.+|++++. .+.++.+..++.... ...++.....|..+ .....
T Consensus 6 ~~~~k~~lItGa~~gI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl~~--~~~~~~ 77 (257)
T PRK09242 6 RLDGQTALITGASKGI-GLAIAREFLGLGADVLIVARDADALAQARDELAEEF-----PEREVHGLAADVSD--DEDRRA 77 (257)
T ss_pred ccCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----CCCeEEEEECCCCC--HHHHHH
Confidence 3468899999886544 3333333 3578999998 665655555554321 02345556666654 22111
Q ss_pred ------hcCCCccEEEEcCc
Q 023457 178 ------VVGREFDVILASDV 191 (282)
Q Consensus 178 ------~~~~~fD~Ii~sd~ 191 (282)
...+++|+|+.+-.
T Consensus 78 ~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 11356899887643
No 390
>PRK07774 short chain dehydrogenase; Provisional
Probab=59.29 E-value=84 Score=26.41 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|+ +|.+|..+++.+ +.+|++++. +..+..+...+... ...+.....|..+ ...+..
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~ 73 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------GGTAIAVQVDVSD--PDSAKAM 73 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC--HHHHHHH
Confidence 35778888884 455666666443 579999998 55554444444321 1234445555554 221111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..+..|+||.+-.+
T Consensus 74 ~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 74 ADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 12468999976544
No 391
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.81 E-value=66 Score=27.20 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.++++|=.|++.|+ |..++.. .+.+|++++. ...++.+.+.+...+ ..+....+|..+ .+....
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------~~~~~~~~D~~~--~~~~~~~~ 73 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------DNVYSFQLKDFS--QESIRHLF 73 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEEccCCC--HHHHHHHH
Confidence 57899999998876 4333333 3578999988 666655555444322 233344445443 222211
Q ss_pred -----cCC-CccEEEEcC
Q 023457 179 -----VGR-EFDVILASD 190 (282)
Q Consensus 179 -----~~~-~fD~Ii~sd 190 (282)
.-+ ..|++|.+-
T Consensus 74 ~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 74 DAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHhCCCCCEEEECC
Confidence 123 789988764
No 392
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=58.30 E-value=58 Score=28.96 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHH---HhC-CEEEEEeh-H---hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccc
Q 023457 104 GCQLNILELGSGTGLVGMAAAA---ILG-AKVTVTDL-P---HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAND 175 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~---~~~-~~V~~tD~-~---~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~ 175 (282)
.+++++|=+|+| |.. ..++. ..+ .+|+.++. . +-.+.+.+.+... ...+.+...+|.+ ...
T Consensus 124 ~~~k~vlI~GAG-Gag-rAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-------~~~~~~~~~d~~~--~~~ 192 (289)
T PRK12548 124 VKGKKLTVIGAG-GAA-TAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-------VPECIVNVYDLND--TEK 192 (289)
T ss_pred cCCCEEEEECCc-HHH-HHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-------CCCceeEEechhh--hhH
Confidence 457899999997 443 22221 234 46999988 5 3333333333211 1123334455543 222
Q ss_pred hhhcCCCccEEEEcCccC
Q 023457 176 VAVVGREFDVILASDVVY 193 (282)
Q Consensus 176 ~~~~~~~fD~Ii~sd~ly 193 (282)
+......+|+||.+-++-
T Consensus 193 ~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 193 LKAEIASSDILVNATLVG 210 (289)
T ss_pred HHhhhccCCEEEEeCCCC
Confidence 222224579998775553
No 393
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.22 E-value=17 Score=33.47 Aligned_cols=43 Identities=23% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCCCCcEEEeCCCC--CHHHHHHHHHhCCEEEEEeh-HhHHHHHHH
Q 023457 103 NGCQLNILELGSGT--GLVGMAAAAILGAKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 103 ~~~g~~VLELGcGt--G~~si~la~~~~~~V~~tD~-~~~l~~~~~ 145 (282)
..+|++||=+|+++ |...+.+|+..+...+.+.. .+.++++++
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~ 200 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKK 200 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHH
Confidence 45688999998876 55677777777645555555 777777765
No 394
>PRK08251 short chain dehydrogenase; Provisional
Probab=57.11 E-value=90 Score=26.23 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh----
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA---- 177 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~---- 177 (282)
++++|=.|+ +|.+|..+++.+ +.+|++++. +..++.+...+.... ...++.+...|..+ ...+.
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~--~~~~~~~~~ 73 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-----PGIKVAVAALDVND--HDQVFEVFA 73 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----CCceEEEEEcCCCC--HHHHHHHHH
Confidence 457887775 556666665444 478999998 666665555443321 12356667777766 22221
Q ss_pred ---hcCCCccEEEEcC
Q 023457 178 ---VVGREFDVILASD 190 (282)
Q Consensus 178 ---~~~~~fD~Ii~sd 190 (282)
......|+|+.+-
T Consensus 74 ~~~~~~~~id~vi~~a 89 (248)
T PRK08251 74 EFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHcCCCCEEEECC
Confidence 1124689888754
No 395
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.04 E-value=92 Score=26.38 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..++++|=.|++.| +|..+++.+ +.+|++++. +..+..+...+... ..++.....|+.+ ...+..
T Consensus 7 l~~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~--~~~~~~~ 76 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------GIKAHAAPFNVTH--KQEVEAA 76 (254)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEecCCCC--HHHHHHH
Confidence 45788999986654 454444343 579999998 65555544444321 2244555666655 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
....+|+|+.+-..
T Consensus 77 ~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 77 IEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 12468999986543
No 396
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=56.72 E-value=89 Score=28.67 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=27.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.++.+||=.|+|. |...+.+|+..+. .|++++. ++-.+.++
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~ 245 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK 245 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3467787778763 6666666666676 7999998 65444443
No 397
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=56.42 E-value=83 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCCCCcEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 103 NGCQLNILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 103 ~~~g~~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
..++++|+=+|+ | .|......+...+.+|++++. .+-.+.+...+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 356889999986 3 243322222234578999887 54444443333
No 398
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.07 E-value=86 Score=27.72 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCE-EEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAK-VTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~-V~~tD~-~~~l~~~~ 144 (282)
.++.+||-+|+| .|...+.+|+..+.+ |++++. ++..+.++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 457789999875 255666666666766 888887 66666553
No 399
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=55.65 E-value=95 Score=24.05 Aligned_cols=86 Identities=21% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHh---CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEE-EEeCCCCccchhhcCCCccEEEEcC
Q 023457 115 GTGLVGMAAAAIL---GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAP-LRWGEAEANDVAVVGREFDVILASD 190 (282)
Q Consensus 115 GtG~~si~la~~~---~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~-ld~~~~~~~~~~~~~~~fD~Ii~sd 190 (282)
|.|.+|..+|..+ +.+|++++...-++.++ .++...........+.. ..+.. .......||+||.+-
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIK----EQGLTITGPDGDETVQPPIVISA-----PSADAGPYDLVIVAV 75 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHHHHHHHH----HHCEEEEETTEEEEEEEEEEESS-----HGHHHSTESEEEE-S
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccccHHhhh----heeEEEEecccceecccccccCc-----chhccCCCcEEEEEe
Confidence 4455665555333 67999999833444433 33332221111111111 11111 011246899999862
Q ss_pred ccCCCCCHHHHHHHHHHHHhcC
Q 023457 191 VVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 191 ~ly~~~~~~~ll~~l~~ll~~g 212 (282)
= ..+.+.+++.++..+.++
T Consensus 76 K---a~~~~~~l~~l~~~~~~~ 94 (151)
T PF02558_consen 76 K---AYQLEQALQSLKPYLDPN 94 (151)
T ss_dssp S---GGGHHHHHHHHCTGEETT
T ss_pred c---ccchHHHHHHHhhccCCC
Confidence 2 235677888888888876
No 400
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.01 E-value=1.7e+02 Score=26.63 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=52.6
Q ss_pred CcEEEeCCCC-CH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcccccccC--CCcEEEEEEEeCCCCccchhhcCC
Q 023457 107 LNILELGSGT-GL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLISLR--GGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 107 ~~VLELGcGt-G~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~--~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
++|-=||+|+ |. ++..++ ..|..|++.|. ++.++.++..+.......... ........+.... ++.....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~----~l~~av~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA----TIEACVA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC----CHHHHhc
Confidence 4677888875 22 222233 44689999999 877766555443211000000 0000001111111 2222235
Q ss_pred CccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 182 EFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 182 ~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
..|+|+-+ +....+.-..+++.+.+.++++
T Consensus 83 ~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~ 112 (321)
T PRK07066 83 DADFIQES-APEREALKLELHERISRAAKPD 112 (321)
T ss_pred CCCEEEEC-CcCCHHHHHHHHHHHHHhCCCC
Confidence 67998875 4444445567888888888886
No 401
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.76 E-value=79 Score=27.85 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++.|+ |..++..+ +.+|++++. .+.++.+...+... ...+.+...|..+ ......
T Consensus 38 ~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------~~~~~~~~~Dl~d--~~~v~~~ 107 (293)
T PRK05866 38 LTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------GGDAMAVPCDLSD--LDAVDAL 107 (293)
T ss_pred CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEccCCC--HHHHHHH
Confidence 457889988876544 55554333 579999998 66665555544321 2245556666655 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..+..|+||.+-.+
T Consensus 108 ~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 12478999976443
No 402
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=54.69 E-value=1.2e+02 Score=24.71 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCCccEEEEcCccCC-------------CCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcC
Q 023457 180 GREFDVILASDVVYH-------------DHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLF 245 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~-------------~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f 245 (282)
...||.||-+-+--. ...+..++.....+|+++ |.+.+.......+ ........+. .+|
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~------G~IhVTl~~~~py-~~W~i~~lA~~~gl 145 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD------GEIHVTLKDGQPY-DSWNIEELAAEAGL 145 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC------CEEEEEeCCCCCC-ccccHHHHHHhcCC
Confidence 468999998754332 234677888888999987 5666655433332 2233334443 477
Q ss_pred ceEE
Q 023457 246 DVET 249 (282)
Q Consensus 246 ~ve~ 249 (282)
.+..
T Consensus 146 ~l~~ 149 (166)
T PF10354_consen 146 VLVR 149 (166)
T ss_pred EEEE
Confidence 6644
No 403
>PRK05872 short chain dehydrogenase; Provisional
Probab=54.31 E-value=1.1e+02 Score=26.98 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
..++++||=.|++.|+ |..+++.+ +.+|++++. ++.++.+.+.+.. ...+.....|+.+ ......
T Consensus 6 ~l~gk~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d--~~~v~~ 74 (296)
T PRK05872 6 SLAGKVVVVTGAARGI-GAELARRLHARGAKLALVDLEEAELAALAAELGG--------DDRVLTVVADVTD--LAAMQA 74 (296)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCC--HHHHHH
Confidence 4568899988876544 44444333 579999998 6655544433321 1234444466665 222111
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
..++.|+||.+-.+
T Consensus 75 ~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 75 AAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 12578999986544
No 404
>PRK06194 hypothetical protein; Provisional
Probab=54.26 E-value=60 Score=28.13 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~- 179 (282)
++++||=.|++ |.+|..+++.+ +.+|+++|. ...++.+...+... ..++.+...|..+ ...+...
T Consensus 5 ~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~d--~~~~~~~~ 74 (287)
T PRK06194 5 AGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------GAEVLGVRTDVSD--AAQVEALA 74 (287)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEECCCCC--HHHHHHHH
Confidence 46788877765 44455554333 578999998 65554444333321 2245556666554 2222111
Q ss_pred ------CCCccEEEEcCcc
Q 023457 180 ------GREFDVILASDVV 192 (282)
Q Consensus 180 ------~~~fD~Ii~sd~l 192 (282)
.+..|+|+.+-.+
T Consensus 75 ~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 75 DAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2467999876443
No 405
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=54.20 E-value=16 Score=34.71 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILG---AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~---~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
.+....++++|.|.|.-+-++-.... ..++.+|. ..|+.....+... +.. .+.+-+..+-+... .++.
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~----~g~~~v~~~~~~r~---~~pi 269 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH----IGEPIVRKLVFHRQ---RLPI 269 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh----cCchhccccchhcc---cCCC
Confidence 34566788999987765544432222 57899999 7777777666543 110 11122222111110 1111
Q ss_pred c-CCCccEEEEcCccCCCC
Q 023457 179 V-GREFDVILASDVVYHDH 196 (282)
Q Consensus 179 ~-~~~fD~Ii~sd~ly~~~ 196 (282)
. ...||+||++..++...
T Consensus 270 ~~~~~yDlvi~ah~l~~~~ 288 (491)
T KOG2539|consen 270 DIKNGYDLVICAHKLHELG 288 (491)
T ss_pred CcccceeeEEeeeeeeccC
Confidence 1 34699999999888644
No 406
>PRK12939 short chain dehydrogenase; Provisional
Probab=54.08 E-value=1e+02 Score=25.77 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++++||=.|+ +|.+|..+++.+ +.+|++++. ++-+..+...+... ..++.+...|..+ ...+...
T Consensus 5 ~~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~ 74 (250)
T PRK12939 5 LAGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------GGRAHAIAADLAD--PASVQRF 74 (250)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC--HHHHHHH
Confidence 35788997776 455666665443 578999987 65555444443321 2356666666665 2222111
Q ss_pred -------CCCccEEEEcC
Q 023457 180 -------GREFDVILASD 190 (282)
Q Consensus 180 -------~~~fD~Ii~sd 190 (282)
..+.|+||.+-
T Consensus 75 ~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 14689988753
No 407
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=53.80 E-value=33 Score=31.50 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=35.5
Q ss_pred CCCCCCcEEEeCCC-CCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 102 SNGCQLNILELGSG-TGLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 102 ~~~~g~~VLELGcG-tG~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
.-.+|.+|.=+||| .|+..+.-|+..+ .+++++|+ +.-++.+++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 34568899999997 5999988886554 68999999 887777765
No 408
>PRK05599 hypothetical protein; Provisional
Probab=53.76 E-value=90 Score=26.53 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=43.5
Q ss_pred cEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-------
Q 023457 108 NILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA------- 177 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~------- 177 (282)
++|=.|++.|+ |..+++.+ +.+|++++. ++-++.+.+.+...+ ...+.+...|..+ .....
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dv~d--~~~v~~~~~~~~ 72 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG------ATSVHVLSFDAQD--LDTHRELVKQTQ 72 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc------CCceEEEEcccCC--HHHHHHHHHHHH
Confidence 57777887655 55554333 578999988 666666555554332 1235566666665 22211
Q ss_pred hcCCCccEEEEcCcc
Q 023457 178 VVGREFDVILASDVV 192 (282)
Q Consensus 178 ~~~~~fD~Ii~sd~l 192 (282)
...+..|++|.+--+
T Consensus 73 ~~~g~id~lv~nag~ 87 (246)
T PRK05599 73 ELAGEISLAVVAFGI 87 (246)
T ss_pred HhcCCCCEEEEecCc
Confidence 113578998865433
No 409
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=53.64 E-value=10 Score=31.03 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.8
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh-CCEEEEEeh-HhHHHHHHHHHHhccccc
Q 023457 106 QLNILELGSGTGLVGMAAAAIL-GAKVTVTDL-PHVLTNLQFNVDANAGLI 154 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~-~~~V~~tD~-~~~l~~~~~n~~~n~~~~ 154 (282)
+.+-+|+|+..|...-.+|+.. .+++++++. .+|-..++-|+..|...+
T Consensus 80 dttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnplv 130 (286)
T PF05575_consen 80 DTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPLV 130 (286)
T ss_pred CceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCcce
Confidence 6689999999887644444444 378999999 888888999998887543
No 410
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=53.55 E-value=1.2e+02 Score=25.72 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-- 177 (282)
..+++||=.|++.|+ |..+++.+ +.+|++++. ...++.+...+... ..++.+...|..+ ...+.
T Consensus 9 l~~k~vlVtG~s~gI-G~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~i~~~ 78 (255)
T PRK06113 9 LDGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------GGQAFACRCDITS--EQELSAL 78 (255)
T ss_pred cCCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC--HHHHHHH
Confidence 458899999976554 44444333 578999987 65555544433321 2245566667665 22211
Q ss_pred -----hcCCCccEEEEcCc
Q 023457 178 -----VVGREFDVILASDV 191 (282)
Q Consensus 178 -----~~~~~fD~Ii~sd~ 191 (282)
.....+|+|+.+-.
T Consensus 79 ~~~~~~~~~~~d~li~~ag 97 (255)
T PRK06113 79 ADFALSKLGKVDILVNNAG 97 (255)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 11246898887644
No 411
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=53.44 E-value=47 Score=27.01 Aligned_cols=32 Identities=41% Similarity=0.568 Sum_probs=19.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHH---HhCCEEEEEeh-H
Q 023457 104 GCQLNILELGSGTGLVGMAAAA---ILGAKVTVTDL-P 137 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~---~~~~~V~~tD~-~ 137 (282)
..|++++=+| .|.+|.-+|+ ..+++|+.+|. |
T Consensus 21 l~Gk~vvV~G--YG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 21 LAGKRVVVIG--YGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp -TTSEEEEE----SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eCCCEEEEeC--CCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4588888875 4455555543 34789999999 6
No 412
>PRK07063 short chain dehydrogenase; Provisional
Probab=53.43 E-value=1.2e+02 Score=25.82 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=46.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++.|+ |..+++.+ +.+|++++. ++.++.+...+.... ...++.+...|..+ ...+..
T Consensus 5 l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~--~~~~~~~ 76 (260)
T PRK07063 5 LAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDV-----AGARVLAVPADVTD--AASVAAA 76 (260)
T ss_pred cCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEEccCCC--HHHHHHH
Confidence 457899988886544 54444333 579999998 665655555444311 12345666667665 222211
Q ss_pred ------cCCCccEEEEcCc
Q 023457 179 ------VGREFDVILASDV 191 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~ 191 (282)
..+.+|++|.+-.
T Consensus 77 ~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 77 VAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHhCCCcEEEECCC
Confidence 1246899887643
No 413
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.33 E-value=1.2e+02 Score=25.46 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
++++||=.|+ +|.+|..+++.+ +.+|++++. +...+.+...+... ..++.....|..+ ...+..
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~~ 72 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-------GGKAIGVAMDVTD--EEAINAGI 72 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC--HHHHHHHH
Confidence 3668886765 566677766544 568999998 66555554444332 2355666666665 222211
Q ss_pred -----cCCCccEEEEcC
Q 023457 179 -----VGREFDVILASD 190 (282)
Q Consensus 179 -----~~~~fD~Ii~sd 190 (282)
....+|+||.+-
T Consensus 73 ~~~~~~~~~~d~vi~~a 89 (258)
T PRK12429 73 DYAVETFGGVDILVNNA 89 (258)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124689998754
No 414
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=53.05 E-value=1.1e+02 Score=27.29 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~ 144 (282)
.++.+||-.|+|. |...+.+|+..+.. |++++. +...+.++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3577888888754 66666667666776 888887 66555553
No 415
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=52.77 E-value=89 Score=27.85 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCcEEEeCC--CCCHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 106 QLNILELGS--GTGLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 106 g~~VLELGc--GtG~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
+.+||=.|+ |.|...+.+|+..+. +|++++. ++-.+.++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 378988887 357788888877787 7999987 665555543
No 416
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.77 E-value=67 Score=28.35 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=24.7
Q ss_pred cEEEeCCCCCHHHHHHH-HHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 108 NILELGSGTGLVGMAAA-AILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 108 ~VLELGcGtG~~si~la-~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
+|.=||+|+=-.+++.+ ...+..|++.|. ++.++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 56777887522222222 123579999999 87777776654
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.52 E-value=71 Score=29.18 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~ 136 (282)
.+|++|-=+|.| -|.+++..|++.+.+|+++|.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~ 213 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVIST 213 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeC
Confidence 478888888875 699999999999999999998
No 418
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.11 E-value=1.4e+02 Score=24.87 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEE-eh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVT-DL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~t-D~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.+++||=.|+ +|.+|..+++.+ +.+|+++ +. +..++.+...+... ..++.+...|+.+ ...+...
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~ 73 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------GGDAIAVKADVSS--EEDVENL 73 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC--HHHHHHH
Confidence 3668888875 566666655433 5688888 87 55444444433321 2346667777665 2222111
Q ss_pred -------CCCccEEEEcCc
Q 023457 180 -------GREFDVILASDV 191 (282)
Q Consensus 180 -------~~~fD~Ii~sd~ 191 (282)
...+|+||.+-.
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 136899997643
No 419
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.97 E-value=1.7e+02 Score=25.94 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh-
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA- 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~- 177 (282)
...++++|=.|++.|+ |..+++.+ +.+|++++. .+-.+.+...+.... ....+.+..+|..+ .....
T Consensus 11 ~l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----~~~~v~~~~~Dl~d--~~sv~~ 82 (313)
T PRK05854 11 DLSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-----PDAKLSLRALDLSS--LASVAA 82 (313)
T ss_pred ccCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCceEEEEecCCC--HHHHHH
Confidence 4568899988886554 54444333 579999887 554444444443221 12356677777766 22211
Q ss_pred ------hcCCCccEEEEcCc
Q 023457 178 ------VVGREFDVILASDV 191 (282)
Q Consensus 178 ------~~~~~fD~Ii~sd~ 191 (282)
...+..|++|.+--
T Consensus 83 ~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 83 LGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHhCCCccEEEECCc
Confidence 11356899997643
No 420
>PRK07890 short chain dehydrogenase; Provisional
Probab=51.83 E-value=1.1e+02 Score=25.75 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++||=.|++.| +|..++..+ +.+|++++. +.-++.+...+... ..++.....|..+ ...+..
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 73 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------GRRALAVPTDITD--EDQCANLV 73 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------CCceEEEecCCCC--HHHHHHHH
Confidence 4778998887554 444444333 579999998 65555554444322 2345666666655 222211
Q ss_pred -----cCCCccEEEEcCcc
Q 023457 179 -----VGREFDVILASDVV 192 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~l 192 (282)
.-+..|+||.+-..
T Consensus 74 ~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 74 ALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHcCCccEEEECCcc
Confidence 12468999876543
No 421
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=51.54 E-value=70 Score=28.20 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=40.9
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcC
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVG 180 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~ 180 (282)
++++||=.|+ +|.+|..+++.+ +.+|++++. ............... ...++.+...|..+ ...+....
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~--~~~~~~~~ 74 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG-----AKERLHLFKANLLE--EGSFDSVV 74 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC-----CCCceEEEeccccC--cchHHHHH
Confidence 3678887775 677777776554 568888876 332221211111111 01345666666665 22232223
Q ss_pred CCccEEEEc
Q 023457 181 REFDVILAS 189 (282)
Q Consensus 181 ~~fD~Ii~s 189 (282)
..+|.||-.
T Consensus 75 ~~~d~Vih~ 83 (322)
T PLN02662 75 DGCEGVFHT 83 (322)
T ss_pred cCCCEEEEe
Confidence 467888754
No 422
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.48 E-value=51 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC----------CEEEEEeh
Q 023457 106 QLNILELGSGTGLVGMAAAAILG----------AKVTVTDL 136 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~----------~~V~~tD~ 136 (282)
-++++||.+..|.++..+++++. ..|+++|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDL 82 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDL 82 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEec
Confidence 35899999999999999997762 23999998
No 423
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=51.26 E-value=63 Score=29.77 Aligned_cols=69 Identities=33% Similarity=0.455 Sum_probs=39.5
Q ss_pred EEEeCCCCCHHHHHHHHHh---C-C-EEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 109 ILELGSGTGLVGMAAAAIL---G-A-KVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~---~-~-~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
|+=||| |..|-.++..+ . . +|++.|. .+-++.+...+ + ..++....+|..+ ...+......
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~-------~~~~~~~~~d~~~--~~~l~~~~~~ 67 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L-------GDRVEAVQVDVND--PESLAELLRG 67 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T-------TTTEEEEE--TTT--HHHHHHHHTT
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c-------ccceeEEEEecCC--HHHHHHHHhc
Confidence 566888 66666665444 2 2 7999999 66555443322 1 4578888888776 4444444567
Q ss_pred ccEEEEcC
Q 023457 183 FDVILASD 190 (282)
Q Consensus 183 fD~Ii~sd 190 (282)
.|+||.+-
T Consensus 68 ~dvVin~~ 75 (386)
T PF03435_consen 68 CDVVINCA 75 (386)
T ss_dssp SSEEEE-S
T ss_pred CCEEEECC
Confidence 79999653
No 424
>PRK05650 short chain dehydrogenase; Provisional
Probab=51.17 E-value=1.6e+02 Score=25.25 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=40.9
Q ss_pred cEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-----
Q 023457 108 NILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV----- 178 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~----- 178 (282)
+||=.|+ +|.+|..+++.+ +.+|++++. ..-++.+...+... ..++.+...|+.+ ...+..
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------GGDGFYQRCDVRD--YSQLTALAQAC 71 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEccCCC--HHHHHHHHHHH
Confidence 5676676 444555554333 578999998 55444444444332 2345566667665 222211
Q ss_pred --cCCCccEEEEcCc
Q 023457 179 --VGREFDVILASDV 191 (282)
Q Consensus 179 --~~~~fD~Ii~sd~ 191 (282)
....+|++|.+-.
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246899987643
No 425
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.02 E-value=39 Score=28.05 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred EEEEEEeCCCCccchhh-cCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEE
Q 023457 162 HVAPLRWGEAEANDVAV-VGREFDVILASDVVYHDHLFDPLLVTLRLFLNSGEPEPKKKKMNFVMA 226 (282)
Q Consensus 162 ~~~~ld~~~~~~~~~~~-~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g~~~~~~g~~~il~~ 226 (282)
.+.-.|++. +.+++. ....||+||+-.++-..+-...--.++++|.++. ..++++.
T Consensus 116 eFvfYDyN~--p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~-------~kvilCt 172 (217)
T KOG3350|consen 116 EFVFYDYNC--PLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQ-------KKVILCT 172 (217)
T ss_pred eeEEeccCC--CCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCC-------ceEEEec
Confidence 455566666 444442 2567999999777666776777888899999887 3456554
No 426
>PLN02253 xanthoxin dehydrogenase
Probab=50.80 E-value=85 Score=27.11 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
...++++|=.|++ |.+|..+++.+ +.+|+++|. +...+.+...+.. ..++.+...|..+ ...+..
T Consensus 15 ~l~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dl~d--~~~~~~ 83 (280)
T PLN02253 15 RLLGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG--------EPNVCFFHCDVTV--EDDVSR 83 (280)
T ss_pred ccCCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------CCceEEEEeecCC--HHHHHH
Confidence 3457889988865 44455555433 579999998 5544443332211 2346666777765 222211
Q ss_pred -------cCCCccEEEEcC
Q 023457 179 -------VGREFDVILASD 190 (282)
Q Consensus 179 -------~~~~fD~Ii~sd 190 (282)
..++.|+||.+-
T Consensus 84 ~~~~~~~~~g~id~li~~A 102 (280)
T PLN02253 84 AVDFTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 124689988654
No 427
>PLN02827 Alcohol dehydrogenase-like
Probab=50.74 E-value=31 Score=31.80 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=.|+|. |...+.+|+..+. .|+++|. +.-++.++
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 4588999999864 7677777766676 5889997 66555553
No 428
>PRK08265 short chain dehydrogenase; Provisional
Probab=50.45 E-value=1.3e+02 Score=25.68 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=43.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.+++++|=.|++.| +|..+++.+ +.+|+++|. .+-++.+.+.+ ..++.+...|+.+ ...+..
T Consensus 4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~--~~~~~~~ 70 (261)
T PRK08265 4 LAGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL----------GERARFIATDITD--DAAIERA 70 (261)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCC--HHHHHHH
Confidence 35778998886544 455554333 579999998 54333332211 1245666777766 222211
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
.....|++|.+-..
T Consensus 71 ~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 71 VATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 12468998876443
No 429
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.28 E-value=30 Score=31.51 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=.|+|. |...+.+|+..+. +|+++|. ++-++.+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4578898898763 6666667766776 7999998 776666643
No 430
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=50.24 E-value=33 Score=31.29 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=30.2
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.++.+||=+|+|. |...+.+|+..++ .|+++|. ++-++.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4578899899864 6666777777777 7999998 66666554
No 431
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.50 E-value=1.5e+02 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=19.7
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH----hCCEEEEEeh
Q 023457 105 CQLNILELGSGTGLVGMAAAAI----LGAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~----~~~~V~~tD~ 136 (282)
...+||=+|||. +|..+++. +-.+++.+|.
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEEC
Confidence 366899999875 33333322 2368999986
No 432
>PRK07454 short chain dehydrogenase; Provisional
Probab=49.48 E-value=1.5e+02 Score=24.67 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.++++|=.|+ +|.+|..+++.+ +.+|++++. +.-.+.+...+... ..++.+...|..+ ...+..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 74 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-------GVKAAAYSIDLSN--PEAIAPGI 74 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-------CCcEEEEEccCCC--HHHHHHHH
Confidence 3567888885 566666666444 479999998 65444444433321 2355666667665 222111
Q ss_pred -----cCCCccEEEEcCcc
Q 023457 179 -----VGREFDVILASDVV 192 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~l 192 (282)
...+.|+|+.+...
T Consensus 75 ~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 75 AELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 12468999976543
No 433
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=48.90 E-value=40 Score=27.69 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=47.8
Q ss_pred EEEeCCCC-CH-HHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhccccc-c----------cCCCcEEEEEEEeCCCCcc
Q 023457 109 ILELGSGT-GL-VGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANAGLI-S----------LRGGSVHVAPLRWGEAEAN 174 (282)
Q Consensus 109 VLELGcGt-G~-~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~-~----------~~~~~v~~~~ld~~~~~~~ 174 (282)
|.=||+|+ |. ++..++ ..|.+|+..|. ++.++.+++.+..+.... . ....++. +..
T Consensus 2 V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-----~~~---- 71 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-----FTT---- 71 (180)
T ss_dssp EEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-----EES----
T ss_pred EEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-----ccc----
Confidence 44577775 32 222232 34789999999 888877776665421100 0 0011222 222
Q ss_pred chhhcCCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 175 DVAVVGREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 175 ~~~~~~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
++.... ..|+||=+- ....+.-..+++.+..++.++
T Consensus 72 dl~~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~ 107 (180)
T PF02737_consen 72 DLEEAV-DADLVIEAI-PEDLELKQELFAELDEICPPD 107 (180)
T ss_dssp SGGGGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TT
T ss_pred CHHHHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCC
Confidence 233333 788888642 223344567888888888777
No 434
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=48.79 E-value=60 Score=26.47 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=31.7
Q ss_pred eeehhHHHHHHHHhhcCCCCCCCcccccCCCCCCCcEEEeCCC-C-CHHHHHHHHHhCCEEEEEeh
Q 023457 73 KLWPAATTLVTLLDQFCSHPSNSPLASSLSNGCQLNILELGSG-T-GLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 73 ~~W~~a~~La~~l~~~~~~~~~~~~~~~~~~~~g~~VLELGcG-t-G~~si~la~~~~~~V~~tD~ 136 (282)
.++.++.-+++.+ . ....+++||=+|+| + |......+...+++|+.++.
T Consensus 26 ~~~~a~v~l~~~~---~------------~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 26 CTPAGILELLKRY---G------------IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred ChHHHHHHHHHHc---C------------CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 4666666666554 1 24579999999998 3 66333333345567888876
No 435
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=48.70 E-value=1.1e+02 Score=25.73 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
++++||=.|++ |.+|..+++.+ +.+|++++. ......+...+... ..++.+...|..+ ......
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~--~~~~~~~~ 71 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------GGNAQAFACDITD--RDSVDTAV 71 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC--HHHHHHHH
Confidence 36788888865 45555555443 468999988 55544444444332 2345566666654 222111
Q ss_pred -----cCCCccEEEEcCc
Q 023457 179 -----VGREFDVILASDV 191 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ 191 (282)
...+.|++|.+-.
T Consensus 72 ~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 72 AAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246798876543
No 436
>PRK05876 short chain dehydrogenase; Provisional
Probab=48.51 E-value=1.3e+02 Score=26.14 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..++++|=.|++.|+ |..++..+ +.+|+++|. ...++.+...+... ..++.+...|..+ ...+..
T Consensus 4 ~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~-------~~~~~~~~~Dv~d--~~~v~~~ 73 (275)
T PRK05876 4 FPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE-------GFDVHGVMCDVRH--REEVTHL 73 (275)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEeCCCCC--HHHHHHH
Confidence 457889988886554 55554433 578999998 55554444433322 2245556666665 222211
Q ss_pred ------cCCCccEEEEcCc
Q 023457 179 ------VGREFDVILASDV 191 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~ 191 (282)
..++.|++|.+-.
T Consensus 74 ~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1246799887543
No 437
>PRK07677 short chain dehydrogenase; Provisional
Probab=48.46 E-value=1.4e+02 Score=25.15 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 106 QLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
++++|=.|++.| +|..+++. .+.+|++++. +..++.+...+... ..++.+...|..+ ......
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~~ 70 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF-------PGQVLTVQMDVRN--PEDVQKMVE 70 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEecCCC--HHHHHHHHH
Confidence 457887888655 34444333 3578999998 65555554444321 2345666666655 222211
Q ss_pred ----cCCCccEEEEcC
Q 023457 179 ----VGREFDVILASD 190 (282)
Q Consensus 179 ----~~~~fD~Ii~sd 190 (282)
..+..|+||.+-
T Consensus 71 ~~~~~~~~id~lI~~a 86 (252)
T PRK07677 71 QIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHhCCccEEEECC
Confidence 124689988654
No 438
>PRK07109 short chain dehydrogenase; Provisional
Probab=48.28 E-value=2.1e+02 Score=25.79 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++.| +|..+++. .+.+|++++. ++.++.+...+... ..++.+...|..+ ...+..
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~-------g~~~~~v~~Dv~d--~~~v~~~ 75 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA-------GGEALAVVADVAD--AEAVQAA 75 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEecCCC--HHHHHHH
Confidence 45778888887554 44444433 3579999998 66666665555432 2345566667665 222211
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..+.+|++|.+-.+
T Consensus 76 ~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHCCCCCEEEECCCc
Confidence 12478999876443
No 439
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.22 E-value=1.6e+02 Score=24.54 Aligned_cols=77 Identities=22% Similarity=0.183 Sum_probs=42.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
+++++|=.|++. .+|..+++.+ +.+|+++|. +.-++.+...+... ..++.....|..+ .....
T Consensus 4 ~~~~~lItG~~g-~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 73 (253)
T PRK08217 4 KDKVIVITGGAQ-GLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL-------GTEVRGYAANVTD--EEDVEATF 73 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCC--HHHHHHHH
Confidence 477899888744 4454444333 578999998 65454444444331 2244555555444 11111
Q ss_pred ----hcCCCccEEEEcCc
Q 023457 178 ----VVGREFDVILASDV 191 (282)
Q Consensus 178 ----~~~~~fD~Ii~sd~ 191 (282)
.....+|+||.+-.
T Consensus 74 ~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 74 AQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 01246899987643
No 440
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.95 E-value=1.8e+02 Score=26.92 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHH--HHHHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTN--LQFNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~--~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
...+++||=.| |+|.+|..+++.+ +.+|++++. ..-+.. ....... ....+.+...|+.+ ...+
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~-------~~~~v~~v~~Dl~d--~~~l 126 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK-------ELPGAEVVFGDVTD--ADSL 126 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh-------hcCCceEEEeeCCC--HHHH
Confidence 35678999888 6788887777544 568999987 432210 0111111 01245677777776 3333
Q ss_pred hhc-CC---CccEEEEc
Q 023457 177 AVV-GR---EFDVILAS 189 (282)
Q Consensus 177 ~~~-~~---~fD~Ii~s 189 (282)
... .. .+|+|+.+
T Consensus 127 ~~~~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 127 RKVLFSEGDPVDVVVSC 143 (390)
T ss_pred HHHHHHhCCCCcEEEEC
Confidence 221 11 68999863
No 441
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=47.54 E-value=83 Score=27.89 Aligned_cols=77 Identities=8% Similarity=0.094 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCC
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGR 181 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~ 181 (282)
+++||=.| |+|.+|..++..+ +.+|++++. +.............+ ...++.+...|..+ ...+.....
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d--~~~~~~~~~ 76 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-----AKERLKLFKADLLD--EGSFELAID 76 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-----CCCceEEEeCCCCC--chHHHHHHc
Confidence 67898888 5677777776544 568887766 432222221111111 11345555555554 222222233
Q ss_pred CccEEEEcC
Q 023457 182 EFDVILASD 190 (282)
Q Consensus 182 ~fD~Ii~sd 190 (282)
.+|+||.+-
T Consensus 77 ~~d~vih~A 85 (325)
T PLN02989 77 GCETVFHTA 85 (325)
T ss_pred CCCEEEEeC
Confidence 578888643
No 442
>PRK08643 acetoin reductase; Validated
Probab=47.54 E-value=1.3e+02 Score=25.34 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh----
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA---- 177 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~---- 177 (282)
++++|=.|+..| +|..+++.+ +.+|++++. +..++.+...+... ...+.+...|..+ ...+.
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~~~ 71 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD-------GGKAIAVKADVSD--RDQVFAAVR 71 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC--HHHHHHHHH
Confidence 457787776544 455444333 578999998 65555555544432 2245556666655 22111
Q ss_pred ---hcCCCccEEEEcCc
Q 023457 178 ---VVGREFDVILASDV 191 (282)
Q Consensus 178 ---~~~~~fD~Ii~sd~ 191 (282)
...++.|++|.+-.
T Consensus 72 ~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 72 QVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 11246899887643
No 443
>PRK07062 short chain dehydrogenase; Provisional
Probab=47.47 E-value=1.8e+02 Score=24.76 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-- 177 (282)
.+++++|=.|++.|+ |..+++. .+.+|++++. ++-++.+...+.... ...++.....|..+ .....
T Consensus 6 l~~k~~lItGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~--~~~v~~~ 77 (265)
T PRK07062 6 LEGRVAVVTGGSSGI-GLATVELLLEAGASVAICGRDEERLASAEARLREKF-----PGARLLAARCDVLD--EADVAAF 77 (265)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-----CCceEEEEEecCCC--HHHHHHH
Confidence 458899999976654 4444433 3578999998 655555544443221 02245566667665 22211
Q ss_pred -----hcCCCccEEEEcCcc
Q 023457 178 -----VVGREFDVILASDVV 192 (282)
Q Consensus 178 -----~~~~~fD~Ii~sd~l 192 (282)
...+..|++|.+-.+
T Consensus 78 ~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 112568998876443
No 444
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.11 E-value=38 Score=30.90 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCC-EEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGA-KVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~-~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=+|+|. |...+.+|+..+. +|+++|. +.-++.++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4578888888863 6666667777776 7999998 66666654
No 445
>PRK08267 short chain dehydrogenase; Provisional
Probab=47.04 E-value=1.8e+02 Score=24.67 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=41.9
Q ss_pred CcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh----
Q 023457 107 LNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV---- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~---- 178 (282)
++||=.|++. .+|..+++.+ +.+|++++. ++.++.+...+. ..++.+...|..+ ...+..
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~--~~~v~~~~~~ 69 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------AGNAWTGALDVTD--RAAWDAALAD 69 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------CCceEEEEecCCC--HHHHHHHHHH
Confidence 4677777664 4455554333 579999998 665555544322 1246677777766 222211
Q ss_pred c----CCCccEEEEcCc
Q 023457 179 V----GREFDVILASDV 191 (282)
Q Consensus 179 ~----~~~fD~Ii~sd~ 191 (282)
. ..++|+|+.+-.
T Consensus 70 ~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 70 FAAATGGRLDVLFNNAG 86 (260)
T ss_pred HHHHcCCCCCEEEECCC
Confidence 0 356899987543
No 446
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.01 E-value=85 Score=28.36 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
..+++||=.|+ +|.+|..+++.+ +.+|++++. +.-...+...... ..++.+...|..+ ...+...
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~--~~~~~~~ 76 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--------GDRLRLFRADLQE--EGSFDEA 76 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--------CCeEEEEECCCCC--HHHHHHH
Confidence 35778998875 688887777554 568998876 4322222111110 2245555556554 2223222
Q ss_pred CCCccEEEEcC
Q 023457 180 GREFDVILASD 190 (282)
Q Consensus 180 ~~~fD~Ii~sd 190 (282)
...+|+||-.-
T Consensus 77 ~~~~d~Vih~A 87 (353)
T PLN02896 77 VKGCDGVFHVA 87 (353)
T ss_pred HcCCCEEEECC
Confidence 34579888643
No 447
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.71 E-value=1.8e+02 Score=24.55 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=43.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|+. |.+|..++..+ +.+|++++. +...+.+...+... ..++.+...|..+ ...+..
T Consensus 5 ~~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~ 74 (262)
T PRK13394 5 LNGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA-------GGKAIGVAMDVTN--EDAVNAG 74 (262)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc-------CceEEEEECCCCC--HHHHHHH
Confidence 457788866664 45555554333 578999998 65554444444321 2245555556554 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
..++.|+||.+-..
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 75 IDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 12458988876544
No 448
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=46.45 E-value=40 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCCCcEEEeCC-C-CCHHHHHHHHHhCCEEEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGS-G-TGLVGMAAAAILGAKVTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGc-G-tG~~si~la~~~~~~V~~tD~-~~~l~~~~ 144 (282)
.+|.+||=.|+ | .|...+.+|+..+.+|++++. ++-.+.++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 45889999998 4 588888888888889999987 66555554
No 449
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=46.33 E-value=2.1e+02 Score=27.55 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh-Hh
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL-PH 138 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~-~~ 138 (282)
...|++|+=+|+|. |......++..+.+|+++|. +.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46799999999985 43333333445789999987 43
No 450
>PRK05875 short chain dehydrogenase; Provisional
Probab=46.01 E-value=1.3e+02 Score=25.85 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=43.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
.++++||=.|++.| +|..+++.+ +.+|++++. +.-++.....+.... ...++.+...|..+ .......
T Consensus 5 ~~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl~~--~~~~~~~ 76 (276)
T PRK05875 5 FQDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-----GAGAVRYEPADVTD--EDQVARA 76 (276)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-----CCCceEEEEcCCCC--HHHHHHH
Confidence 45789999997544 455554333 578999998 554444433333211 01345566666655 2222111
Q ss_pred -------CCCccEEEEcC
Q 023457 180 -------GREFDVILASD 190 (282)
Q Consensus 180 -------~~~fD~Ii~sd 190 (282)
....|+||.+-
T Consensus 77 ~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 23689998754
No 451
>PRK06138 short chain dehydrogenase; Provisional
Probab=45.30 E-value=1.1e+02 Score=25.61 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=43.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
+++++|=.||.. .+|..+++. .+.+|++++. .+.+......+.. ..++.+...|..+ ...+..
T Consensus 4 ~~k~~lItG~sg-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~D~~~--~~~~~~~~ 72 (252)
T PRK06138 4 AGRVAIVTGAGS-GIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA--------GGRAFARQGDVGS--AEAVEALV 72 (252)
T ss_pred CCcEEEEeCCCc-hHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc--------CCeEEEEEcCCCC--HHHHHHHH
Confidence 477899998854 444444433 3578999988 5544444443331 2345666666655 222211
Q ss_pred -----cCCCccEEEEcCc
Q 023457 179 -----VGREFDVILASDV 191 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ 191 (282)
...++|+|+.+-.
T Consensus 73 ~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 73 DFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1247899887544
No 452
>PRK06196 oxidoreductase; Provisional
Probab=45.17 E-value=1.3e+02 Score=26.61 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=42.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..+++||=.|++ |.+|..+++.+ +.+|++++. +..++.+...+. .+.+...|..+ ...+..
T Consensus 24 l~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----------~v~~~~~Dl~d--~~~v~~~ 89 (315)
T PRK06196 24 LSGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----------GVEVVMLDLAD--LESVRAF 89 (315)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------hCeEEEccCCC--HHHHHHH
Confidence 357889988865 45566666443 578999988 554443332221 13445556555 222111
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
.....|+||.+-.+
T Consensus 90 ~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 90 AERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHhcCCCCCEEEECCCC
Confidence 12568999876443
No 453
>PRK07035 short chain dehydrogenase; Provisional
Probab=45.15 E-value=1.9e+02 Score=24.36 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
.++++||=.|++.|+ |..+++. .+.+|++++. ...++.+.+.+... ..++.....|..+ ......
T Consensus 6 l~~k~vlItGas~gI-G~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~ 75 (252)
T PRK07035 6 LTGKIALVTGASRGI-GEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA-------GGKAEALACHIGE--MEQIDAL 75 (252)
T ss_pred cCCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEcCCCC--HHHHHHH
Confidence 457889999987655 3333322 3679999998 66555554444332 2234555566655 222111
Q ss_pred ------cCCCccEEEEcC
Q 023457 179 ------VGREFDVILASD 190 (282)
Q Consensus 179 ------~~~~fD~Ii~sd 190 (282)
..+..|+|+.+-
T Consensus 76 ~~~~~~~~~~id~li~~a 93 (252)
T PRK07035 76 FAHIRERHGRLDILVNNA 93 (252)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 124689988654
No 454
>PRK08589 short chain dehydrogenase; Validated
Probab=45.03 E-value=2e+02 Score=24.76 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++++|=.|++.|+ |..+++.+ +.+|++++....++.+...+... ..++.+...|..+ ......
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~~~ 73 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------GGKAKAYHVDISD--EQQVKDFA 73 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------CCeEEEEEeecCC--HHHHHHHH
Confidence 357889988887654 44444333 57999998832223232333221 2346666777665 222211
Q ss_pred -----cCCCccEEEEcCcc
Q 023457 179 -----VGREFDVILASDVV 192 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~l 192 (282)
..+..|++|.+-.+
T Consensus 74 ~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 74 SEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHcCCcCEEEECCCC
Confidence 12468999876433
No 455
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.93 E-value=1.6e+02 Score=24.87 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
..++++||=.|++ |.+|..+++.+ +.+|++++. +..++.+...... .++.+...|+.+ ...+..
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~--~~~~~~ 75 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG---------AKVTATVADVAD--PAQVER 75 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---------CceEEEEccCCC--HHHHHH
Confidence 3468899999886 44455544333 578999998 6555444332211 134556666665 222111
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
...++|+||.+-.
T Consensus 76 ~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 76 VFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 1246899987543
No 456
>PRK07478 short chain dehydrogenase; Provisional
Probab=44.45 E-value=1.9e+02 Score=24.34 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.++++|=.|++.|+ |..+++. .+.+|++++. +.-++.+...+... ..++.+...|..+ ......
T Consensus 5 ~~k~~lItGas~gi-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 74 (254)
T PRK07478 5 NGKVAIITGASSGI-GRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE-------GGEAVALAGDVRD--EAYAKALV 74 (254)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC--HHHHHHHH
Confidence 47788888876544 4444433 3579999998 66555555544432 2245555556555 221111
Q ss_pred -----cCCCccEEEEcCc
Q 023457 179 -----VGREFDVILASDV 191 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ 191 (282)
..+..|++|.+-.
T Consensus 75 ~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 75 ALAVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 1246898887643
No 457
>PRK07024 short chain dehydrogenase; Provisional
Probab=44.20 E-value=1.2e+02 Score=25.71 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh---
Q 023457 106 QLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV--- 178 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~--- 178 (282)
+++||=.|+ +|.+|..++..+ +.+|+++|. ++.++.+...+.. ..++.+...|..+ ...+..
T Consensus 2 ~~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~--~~~i~~~~~ 70 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK--------AARVSVYAADVRD--ADALAAAAA 70 (257)
T ss_pred CCEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc--------CCeeEEEEcCCCC--HHHHHHHHH
Confidence 356777776 445565555443 579999998 6555444332211 1156667777765 222211
Q ss_pred ----cCCCccEEEEcCc
Q 023457 179 ----VGREFDVILASDV 191 (282)
Q Consensus 179 ----~~~~fD~Ii~sd~ 191 (282)
..+..|+||.+-.
T Consensus 71 ~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 71 DFIAAHGLPDVVIANAG 87 (257)
T ss_pred HHHHhCCCCCEEEECCC
Confidence 1245799997643
No 458
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=44.04 E-value=51 Score=26.26 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=45.2
Q ss_pred EEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccc--cCCCcEEEEEEEeCCCCccchhhcCCC
Q 023457 109 ILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLIS--LRGGSVHVAPLRWGEAEANDVAVVGRE 182 (282)
Q Consensus 109 VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~--~~~~~v~~~~ld~~~~~~~~~~~~~~~ 182 (282)
|.=||+|. .|.++|..+ +.+|+.-.. ++.++.++.+-. |..... .....+.+ .. ++......
T Consensus 2 I~ViGaG~--~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~~-----t~----dl~~a~~~ 69 (157)
T PF01210_consen 2 IAVIGAGN--WGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIKA-----TT----DLEEALED 69 (157)
T ss_dssp EEEESSSH--HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEEE-----ES----SHHHHHTT
T ss_pred EEEECcCH--HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCccccc-----cc----CHHHHhCc
Confidence 33456654 444444222 468999998 777776665422 211000 00112221 11 23222356
Q ss_pred ccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 183 FDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 183 fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
.|+|+.+=.- ..++.+++.+...++++
T Consensus 70 ad~IiiavPs---~~~~~~~~~l~~~l~~~ 96 (157)
T PF01210_consen 70 ADIIIIAVPS---QAHREVLEQLAPYLKKG 96 (157)
T ss_dssp -SEEEE-S-G---GGHHHHHHHHTTTSHTT
T ss_pred ccEEEecccH---HHHHHHHHHHhhccCCC
Confidence 7999876443 34678888888888776
No 459
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=44.04 E-value=1.2e+02 Score=26.78 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHhC-----CEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc
Q 023457 106 QLNILELGSGTGLVGMAAAAILG-----AKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV 179 (282)
Q Consensus 106 g~~VLELGcGtG~~si~la~~~~-----~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~ 179 (282)
+.+.+|||+|+.--+..+...+. .+++.+|+ ..++....+.+..... .-.+....-++... ...++.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----~l~v~~l~~~~~~~-La~~~~- 151 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----GLEVNALCGDYELA-LAELPR- 151 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----CCeEeehhhhHHHH-HhcccC-
Confidence 67999999998776655544432 58999999 7777665555544321 11122222222210 001111
Q ss_pred CCCccEEEEcCcc--CCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVV--YHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~l--y~~~~~~~ll~~l~~ll~~g 212 (282)
.+.-=.++....+ +.+.....++..++..++||
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence 1111122222333 24556788999999999998
No 460
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=43.88 E-value=74 Score=26.76 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhCCEEEEEeh
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~~~V~~tD~ 136 (282)
+..|++||=+|.|. |.--+......++.|+.++.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 45688999999885 33333333355789998886
No 461
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=43.78 E-value=2e+02 Score=24.44 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+.+++++|=.|++.|+ |..++.. .+.+|++++. ++-++.+..++... ..++.....|..+ ...+..
T Consensus 7 ~~~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~~~~ 76 (265)
T PRK07097 7 SLKGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL-------GIEAHGYVCDVTD--EDGVQA 76 (265)
T ss_pred CCCCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCC--HHHHHH
Confidence 4568899999988655 3333322 3578999988 66555555554432 2346666667665 222111
Q ss_pred -------cCCCccEEEEcCcc
Q 023457 179 -------VGREFDVILASDVV 192 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~l 192 (282)
....+|++|.+-.+
T Consensus 77 ~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCC
Confidence 12468999976544
No 462
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=43.31 E-value=1.2e+02 Score=26.16 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCCcEEEeCCC-CCHH-HHHHHHHhCCEEEEEeh
Q 023457 105 CQLNILELGSG-TGLV-GMAAAAILGAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcG-tG~~-si~la~~~~~~V~~tD~ 136 (282)
...+||=+||| .|.. ...+++.+-.+++.+|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 46799999998 4554 34444333378999996
No 463
>PRK09186 flagellin modification protein A; Provisional
Probab=43.12 E-value=1.2e+02 Score=25.47 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhc-
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVV- 179 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~- 179 (282)
++++||=.|++. .+|..++..+ +.+|++++. ++.++.+...+.... ....+.+...|..+ ...+...
T Consensus 3 ~~k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl~d--~~~~~~~~ 74 (256)
T PRK09186 3 KGKTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF-----KSKKLSLVELDITD--QESLEEFL 74 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc-----CCCceeEEEecCCC--HHHHHHHH
Confidence 477899888854 4455555443 578999988 655555544443221 01234444566665 2222111
Q ss_pred ------CCCccEEEEcC
Q 023457 180 ------GREFDVILASD 190 (282)
Q Consensus 180 ------~~~fD~Ii~sd 190 (282)
....|+||.+-
T Consensus 75 ~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 75 SKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHcCCccEEEECC
Confidence 24589998753
No 464
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=42.90 E-value=44 Score=31.14 Aligned_cols=42 Identities=29% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCCCcEEEeC-CC-CCHHHHHHHHHhC---CEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELG-SG-TGLVGMAAAAILG---AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELG-cG-tG~~si~la~~~~---~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+||=+| +| .|+..+.+|+..+ .+|+++|. +.-++.+++
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 4567888887 45 4888887876653 37999999 777777765
No 465
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.85 E-value=1.3e+02 Score=23.42 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=43.0
Q ss_pred CcEEEeCCCCCHHHHHHHHHh----CCEEEEEehH---hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh--
Q 023457 107 LNILELGSGTGLVGMAAAAIL----GAKVTVTDLP---HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA-- 177 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~----~~~V~~tD~~---~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~-- 177 (282)
|+||=.|++.|+ |..+++.+ +..|+++... .....+...+... ..++.+...|..+ .+...
T Consensus 1 k~~lItGa~~gi-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-------~~~~~~~~~D~~~--~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGI-GRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-------GAKITFIECDLSD--PESIRAL 70 (167)
T ss_dssp EEEEEETTTSHH-HHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-------TSEEEEEESETTS--HHHHHHH
T ss_pred CEEEEECCCCHH-HHHHHHHHHhcCceEEEEeeeccccccccccccccccc-------ccccccccccccc--ccccccc
Confidence 357777877544 44444332 3466666654 3444444444432 3467777777665 32221
Q ss_pred -----hcCCCccEEEEcCccCC
Q 023457 178 -----VVGREFDVILASDVVYH 194 (282)
Q Consensus 178 -----~~~~~fD~Ii~sd~ly~ 194 (282)
......|++|.+-.+..
T Consensus 71 ~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 71 IEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccccccc
Confidence 12468999997755544
No 466
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=42.82 E-value=93 Score=25.42 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=29.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHh-CCEEEEEehHhHHHHHHHHHHhcc
Q 023457 107 LNILELGSGTGLVGMAAAAIL-GAKVTVTDLPHVLTNLQFNVDANA 151 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~-~~~V~~tD~~~~l~~~~~n~~~n~ 151 (282)
..|+.||||-=.....+.... +.+++=+|.|+++..=++.+..++
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~ 125 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESG 125 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCc
Confidence 489999999877777775433 457777777888887777776653
No 467
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.56 E-value=92 Score=26.91 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh--HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCcc-ch--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL--PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEAN-DV-- 176 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~--~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~-~~-- 176 (282)
..+.||=.||..|-.|-++|+.. |..|++|-. +.|-++.++ ..+....||..+.+.- .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-------------~gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-------------FGLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-------------hCCeeEEeccCChHHHHHHHH
Confidence 36789999999999999998665 578999987 445444422 1355666776652211 01
Q ss_pred ---hhcCCCccEEEE
Q 023457 177 ---AVVGREFDVILA 188 (282)
Q Consensus 177 ---~~~~~~fD~Ii~ 188 (282)
....++.|+.+-
T Consensus 73 evr~~~~Gkld~L~N 87 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYN 87 (289)
T ss_pred HHhhCCCCceEEEEc
Confidence 113567787774
No 468
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.49 E-value=1.1e+02 Score=26.23 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHh---CCEEEEEeh
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAIL---GAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~---~~~V~~tD~ 136 (282)
..++++|=.|+| ++-+|..+|+.+ +.+|++++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecC
Confidence 457899999995 566666666543 579999986
No 469
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.33 E-value=1.4e+02 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHh---CCEEEEEeh
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAIL---GAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~---~~~V~~tD~ 136 (282)
..++++|=.|++. +-+|..+++.+ +.+|++++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 4588999999873 55566666544 578988865
No 470
>PRK06940 short chain dehydrogenase; Provisional
Probab=42.30 E-value=2.3e+02 Score=24.53 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred CcEEEeCCCCCHHHHHHHHHh--CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-----
Q 023457 107 LNILELGSGTGLVGMAAAAIL--GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV----- 178 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~~~--~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~----- 178 (282)
+++|=-|+ |-+|..+++.+ +.+|+++|. +.-++.+...+... ..++.+...|..+ ...+..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dv~d--~~~i~~~~~~~ 71 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA-------GFDVSTQEVDVSS--RESVKALAATA 71 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEeecCC--HHHHHHHHHHH
Confidence 45665565 34676666554 478999998 65554444433321 2356666777766 222111
Q ss_pred -cCCCccEEEEcCccC
Q 023457 179 -VGREFDVILASDVVY 193 (282)
Q Consensus 179 -~~~~fD~Ii~sd~ly 193 (282)
..+.+|++|.+-.+.
T Consensus 72 ~~~g~id~li~nAG~~ 87 (275)
T PRK06940 72 QTLGPVTGLVHTAGVS 87 (275)
T ss_pred HhcCCCCEEEECCCcC
Confidence 124689998765443
No 471
>PRK08226 short chain dehydrogenase; Provisional
Probab=42.27 E-value=1.9e+02 Score=24.52 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh-
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV- 178 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~- 178 (282)
..++++|=.|+. |.+|..++..+ +.+|++++. ....+.++. +... ..++.+...|..+ ...+..
T Consensus 4 ~~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~-------~~~~~~~~~Dl~~--~~~v~~~ 72 (263)
T PRK08226 4 LTGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGR-------GHRCTAVVADVRD--PASVAAA 72 (263)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHh-------CCceEEEECCCCC--HHHHHHH
Confidence 347789988875 44455554333 578999998 543333322 2221 2244555556555 222211
Q ss_pred ------cCCCccEEEEcCcc
Q 023457 179 ------VGREFDVILASDVV 192 (282)
Q Consensus 179 ------~~~~fD~Ii~sd~l 192 (282)
.....|+||.+-.+
T Consensus 73 ~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 73 IKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 12467998876543
No 472
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=42.24 E-value=1.1e+02 Score=27.12 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-Hh
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PH 138 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~ 138 (282)
.++++||=||||- |......+...+ .+|+.++. .+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 3578999999984 444333333344 68999987 44
No 473
>PRK13699 putative methylase; Provisional
Probab=42.04 E-value=66 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEEEEeecCcccHHHHHHHHh-hcCceE
Q 023457 198 FDPLLVTLRLFLNSGEPEPKKKKMNFVMAHLRRWKKDSVFFKKAK-KLFDVE 248 (282)
Q Consensus 198 ~~~ll~~l~~ll~~g~~~~~~g~~~il~~~~~~~~~~~~f~~~~~-~~f~ve 248 (282)
....+..+.++|++| |.+++.+.. ++ ...+...++ .||.+.
T Consensus 51 ~~~~l~E~~RVLKpg------g~l~if~~~-~~---~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 51 LQPACNEMYRVLKKD------ALMVSFYGW-NR---VDRFMAAWKNAGFSVV 92 (227)
T ss_pred HHHHHHHHHHHcCCC------CEEEEEecc-cc---HHHHHHHHHHCCCEEe
Confidence 456788889999998 454443332 22 234555554 488764
No 474
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=41.97 E-value=1.5e+02 Score=27.79 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCHHHHHHHH---HhCCEEEEEeh-HhHHHHH
Q 023457 107 LNILELGSGTGLVGMAAAA---ILGAKVTVTDL-PHVLTNL 143 (282)
Q Consensus 107 ~~VLELGcGtG~~si~la~---~~~~~V~~tD~-~~~l~~~ 143 (282)
++|.=||.|. +|..+|. ..+.+|++.|. ++.++.+
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 3566666664 4333332 33579999999 7766654
No 475
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.96 E-value=1.3e+02 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=19.0
Q ss_pred CCCccEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 180 GREFDVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
...||+|+.+ +++...+..+.+...+.
T Consensus 44 ~~~~Diil~~------Pqv~~~~~~i~~~~~~~ 70 (96)
T cd05564 44 IDDADVVLLG------PQVRYMLDEVKKKAAEY 70 (96)
T ss_pred cCCCCEEEEC------hhHHHHHHHHHHHhccC
Confidence 4579999986 56666777777765443
No 476
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=41.85 E-value=75 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHHhcc
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVDANA 151 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~~n~ 151 (282)
...+..|||-=+|+|..++++. ..+..+++.++ +..++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~-~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAK-NLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHH-HcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3568899999999999999885 77899999999 888888887776543
No 477
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.74 E-value=53 Score=29.96 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVLTNLQF 145 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l~~~~~ 145 (282)
.+|.+|.=+|+|. |+..+.-|+..+ ++++++|+ ++=.+.+++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 4688999999985 777666665544 69999999 877777654
No 478
>PRK06197 short chain dehydrogenase; Provisional
Probab=41.63 E-value=2e+02 Score=25.18 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
+..+++||=.|+. |.+|..+++.+ +.+|++++. ....+.+...+.... ...++.+...|..+ ......
T Consensus 13 ~~~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl~d--~~~v~~ 84 (306)
T PRK06197 13 DQSGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-----PGADVTLQELDLTS--LASVRA 84 (306)
T ss_pred cCCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCC--HHHHHH
Confidence 3467889977764 44555555433 578888887 544444433333211 02345566666655 222111
Q ss_pred -------cCCCccEEEEcCc
Q 023457 179 -------VGREFDVILASDV 191 (282)
Q Consensus 179 -------~~~~fD~Ii~sd~ 191 (282)
....+|+||.+-.
T Consensus 85 ~~~~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHHHHhhCCCCCEEEECCc
Confidence 1246899987643
No 479
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.62 E-value=45 Score=32.04 Aligned_cols=37 Identities=38% Similarity=0.416 Sum_probs=28.1
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhCCEEEEEeh-HhHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILGAKVTVTDL-PHVL 140 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~~~V~~tD~-~~~l 140 (282)
..+++|+=+|.| +|.....++...++.|+++|. +..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~ 48 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 357899999998 477666666667899999998 5433
No 480
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=41.59 E-value=2.1e+02 Score=23.90 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCCCcEEEeCCCC-CH-HHHHHHHHhCCEEEEEeh
Q 023457 104 GCQLNILELGSGT-GL-VGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~-~si~la~~~~~~V~~tD~ 136 (282)
.+..+|+=+|||. |. ++..+++.+-.+++.+|.
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~ 53 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDF 53 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3467999999984 44 344444333357998887
No 481
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=41.58 E-value=1.5e+02 Score=26.38 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
.+|+...|||+-.|-.+-.+- +.+-.|+++|...|-+.+.. .+.+....-|=-. +.......
T Consensus 210 ~~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng~ma~sL~d------------tg~v~h~r~DGfk-----~~P~r~~i 271 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNGPMAQSLMD------------TGQVTHLREDGFK-----FRPTRSNI 271 (358)
T ss_pred cCCceeeecccCCCccchhhh-hcceEEEEeccchhhhhhhc------------ccceeeeeccCcc-----cccCCCCC
Confidence 468999999999999998886 55689999998444333321 2233322211111 11113568
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|-.+| |++..+. .+-.-+...|..|
T Consensus 272 dWmVC-DmVEkP~---rv~~li~~Wl~nG 296 (358)
T COG2933 272 DWMVC-DMVEKPA---RVAALIAKWLVNG 296 (358)
T ss_pred ceEEe-ehhcCcH---HHHHHHHHHHHcc
Confidence 88887 7775444 4444444555544
No 482
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=41.39 E-value=56 Score=28.55 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhC-CEEEEEeh-HhHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILG-AKVTVTDL-PHVLTNL 143 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~-~~V~~tD~-~~~l~~~ 143 (282)
.+..+|+=+|+| .|.+...+..+.| .+++.+|. .-.+.++
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~ 70 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT 70 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 346689999997 5887766654544 78999998 4333333
No 483
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=41.17 E-value=2.1e+02 Score=24.54 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV 178 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~ 178 (282)
..+++++|=.|++.|+ |..++.. .+.+|++++. ++.++.+...+... ..++.+...|..+ ...+..
T Consensus 7 ~~~~k~vlVtGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~--~~~v~~ 76 (278)
T PRK08277 7 SLKGKVAVITGGGGVL-GGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLD--KESLEQ 76 (278)
T ss_pred ccCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC--HHHHHH
Confidence 3467889988886544 4444333 3579999998 65555554444332 2245555666655 222111
Q ss_pred -------cCCCccEEEEcC
Q 023457 179 -------VGREFDVILASD 190 (282)
Q Consensus 179 -------~~~~fD~Ii~sd 190 (282)
.-+.+|++|.+-
T Consensus 77 ~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 77 ARQQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 124789998753
No 484
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=40.99 E-value=1.4e+02 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHhC-CEEEEEeh-HhHHHHHHHH
Q 023457 104 GCQLNILELGSG-TGLVGMAAAAILG-AKVTVTDL-PHVLTNLQFN 146 (282)
Q Consensus 104 ~~g~~VLELGcG-tG~~si~la~~~~-~~V~~tD~-~~~l~~~~~n 146 (282)
..+++||=+|+| .|......+...+ .+|+.++. .+-.+.+...
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~ 166 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKL 166 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 457899999986 2333332223345 78999998 6544444443
No 485
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=40.92 E-value=1.8e+02 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=21.7
Q ss_pred CCCCcEEEeCCCC-CH-HHHHHHHHhCCEEEEEeh
Q 023457 104 GCQLNILELGSGT-GL-VGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~-~si~la~~~~~~V~~tD~ 136 (282)
.+..+|+=+|||. |. +...+++.+-.+++.+|.
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3577999999983 44 344444333367888887
No 486
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=40.87 E-value=1.5e+02 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCCCcEEEeCCCC-CHHHHHHHHHhC-CEEEEEeh-HhHH
Q 023457 103 NGCQLNILELGSGT-GLVGMAAAAILG-AKVTVTDL-PHVL 140 (282)
Q Consensus 103 ~~~g~~VLELGcGt-G~~si~la~~~~-~~V~~tD~-~~~l 140 (282)
...+++|+=+|||. |......+...+ ..|++++. +.-.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra 219 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERA 219 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHH
Confidence 35788999999974 555444443445 48999998 5433
No 487
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.81 E-value=50 Score=28.39 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHhCCE-EEEEeh-HhHHHHHH
Q 023457 104 GCQLNILELGSGT-GLVGMAAAAILGAK-VTVTDL-PHVLTNLQ 144 (282)
Q Consensus 104 ~~g~~VLELGcGt-G~~si~la~~~~~~-V~~tD~-~~~l~~~~ 144 (282)
.++.+||=.|||. |...+.+|+..+.+ |++++. ++-.+.++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE 139 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH
Confidence 4577888888764 66666677666777 999998 66655444
No 488
>PRK08303 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.8e+02 Score=25.81 Aligned_cols=32 Identities=34% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL 136 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~ 136 (282)
..++++|=.|++.|+ |..+++.+ +.+|++++.
T Consensus 6 l~~k~~lITGgs~GI-G~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 6 LRGKVALVAGATRGA-GRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEec
Confidence 468899999987664 44444333 578998886
No 489
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.62 E-value=1.4e+02 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred CcEEEeCCCC-C-HHHHHHHHHhCCEEEEEeh-HhHHHHHHHHH
Q 023457 107 LNILELGSGT-G-LVGMAAAAILGAKVTVTDL-PHVLTNLQFNV 147 (282)
Q Consensus 107 ~~VLELGcGt-G-~~si~la~~~~~~V~~tD~-~~~l~~~~~n~ 147 (282)
++|.=||+|. | .++..++ ..+.+|++.|. ++.++.++..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHH
Confidence 3566778775 2 2222222 33568999999 77777766543
No 490
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=40.36 E-value=2.3e+02 Score=23.96 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=42.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
.+++++|=.|++.|+ |..+++.+ +.+|+++|.......+...+... ...+.+...|..+ .....
T Consensus 6 ~~~k~vlVtGas~gI-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 75 (260)
T PRK12823 6 FAGKVVVVTGAAQGI-GRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------GGEALALTADLET--YAGAQAAM 75 (260)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------CCeEEEEEEeCCC--HHHHHHHH
Confidence 457889999976544 44444333 57899999832233333333221 2345566667665 22111
Q ss_pred ----hcCCCccEEEEcC
Q 023457 178 ----VVGREFDVILASD 190 (282)
Q Consensus 178 ----~~~~~fD~Ii~sd 190 (282)
.....+|++|.+-
T Consensus 76 ~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 76 AAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHcCCCeEEEECC
Confidence 1124689888653
No 491
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=40.36 E-value=1.1e+02 Score=26.11 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=20.7
Q ss_pred CCCcEEEeCCCC-CHH-HHHHHHHhCCEEEEEeh
Q 023457 105 CQLNILELGSGT-GLV-GMAAAAILGAKVTVTDL 136 (282)
Q Consensus 105 ~g~~VLELGcGt-G~~-si~la~~~~~~V~~tD~ 136 (282)
...+|+=+|||. |.. ...++..+-.+++.+|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467999999983 443 33444333368888875
No 492
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=40.18 E-value=2.2e+02 Score=24.22 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH---hCCEEEEEeh--HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAI---LGAKVTVTDL--PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~---~~~~V~~tD~--~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..++++||=.|++.|+ |..+++. .+.+|+++.. ++.++.+...+.... ..++.+...|..+ ...+.
T Consensus 5 ~l~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~--~~~~~ 75 (260)
T PRK08416 5 EMKGKTLVISGGTRGI-GKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY------GIKAKAYPLNILE--PETYK 75 (260)
T ss_pred ccCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc------CCceEEEEcCCCC--HHHHH
Confidence 3468899988877654 4344333 3578887753 444444433333211 2355666667665 22221
Q ss_pred -------hcCCCccEEEEcC
Q 023457 178 -------VVGREFDVILASD 190 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd 190 (282)
.....+|+++.+-
T Consensus 76 ~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 76 ELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHHHHhcCCccEEEECc
Confidence 1124689888654
No 493
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=39.73 E-value=1.4e+02 Score=26.54 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhh--
Q 023457 105 CQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAV-- 178 (282)
Q Consensus 105 ~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~-- 178 (282)
.+++||=.|+.. .+|..+++.+ +.+|++++. ..-.+.+...+... ..++.+..+|..+ ...+..
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~--~~~v~~~~ 74 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP-------PDSYTIIHIDLGD--LDSVRRFV 74 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc-------CCceEEEEecCCC--HHHHHHHH
Confidence 477888888754 4455554433 578999987 55444443333211 2346666777665 222111
Q ss_pred -----cCCCccEEEEcCc
Q 023457 179 -----VGREFDVILASDV 191 (282)
Q Consensus 179 -----~~~~fD~Ii~sd~ 191 (282)
.....|+||.+-.
T Consensus 75 ~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 75 DDFRALGKPLDALVCNAA 92 (322)
T ss_pred HHHHHhCCCccEEEECCc
Confidence 1246899997644
No 494
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=39.57 E-value=2.4e+02 Score=28.17 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=41.6
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHH-HhC-CEEEEEehHhHHHHHH---HHHHhcccccccCCCcEEEEEEEeCCCCccch
Q 023457 102 SNGCQLNILELGSGTGLVGMAAAA-ILG-AKVTVTDLPHVLTNLQ---FNVDANAGLISLRGGSVHVAPLRWGEAEANDV 176 (282)
Q Consensus 102 ~~~~g~~VLELGcGtG~~si~la~-~~~-~~V~~tD~~~~l~~~~---~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~ 176 (282)
...+..+|+=||.|.....+..+. ..| .++.++|...+..++. +-++.... ....+.+..++-.. ..++
T Consensus 125 ~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~----~n~~v~v~~i~~~~--~~dl 198 (637)
T TIGR03693 125 ELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE----TDDALLVQEIDFAE--DQHL 198 (637)
T ss_pred hhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH----hCCCCceEeccCCc--chhH
Confidence 345778999999998665555442 223 5676665522222111 11111100 12345555554322 2233
Q ss_pred hhcCCCccEEEEc
Q 023457 177 AVVGREFDVILAS 189 (282)
Q Consensus 177 ~~~~~~fD~Ii~s 189 (282)
...-..||+||..
T Consensus 199 ~ev~~~~DiVi~v 211 (637)
T TIGR03693 199 HEAFEPADWVLYV 211 (637)
T ss_pred HHhhcCCcEEEEE
Confidence 3334689999984
No 495
>PRK11524 putative methyltransferase; Provisional
Probab=39.28 E-value=30 Score=30.62 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCCccEEEEcCccCCC----------------CCHHHHHHHHHHHHhcCCCCCCCceEEEE
Q 023457 180 GREFDVILASDVVYHD----------------HLFDPLLVTLRLFLNSGEPEPKKKKMNFV 224 (282)
Q Consensus 180 ~~~fD~Ii~sd~ly~~----------------~~~~~ll~~l~~ll~~g~~~~~~g~~~il 224 (282)
..+||+|++..+.+.. ..+..++..+.++|+++ |.+++.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~------G~i~i~ 79 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ------GTMYIM 79 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC------cEEEEE
Confidence 4578999986654310 11356888999999998 565554
No 496
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.26 E-value=2.6e+02 Score=24.38 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=45.2
Q ss_pred cEEEeCCCCCHHHHHHHH---HhCCEEEEEeh-HhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchhhcCCCc
Q 023457 108 NILELGSGTGLVGMAAAA---ILGAKVTVTDL-PHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVAVVGREF 183 (282)
Q Consensus 108 ~VLELGcGtG~~si~la~---~~~~~V~~tD~-~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~~~~~~f 183 (282)
+|+=||||. +|..+|. ..+.+|++++. ++.++.++++ +.... ..... ..... ..+... ...+
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~--~~~~~-~~~~~----~~~~~~-~~~~ 67 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLE--DGEIT-VPVLA----ADDPAE-LGPQ 67 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCccc--CCcee-ecccC----CCChhH-cCCC
Confidence 567788764 3333332 23568999998 6655555432 22110 01110 00000 111111 2679
Q ss_pred cEEEEcCccCCCCCHHHHHHHHHHHHhcC
Q 023457 184 DVILASDVVYHDHLFDPLLVTLRLFLNSG 212 (282)
Q Consensus 184 D~Ii~sd~ly~~~~~~~ll~~l~~ll~~g 212 (282)
|+||.+--- .....+++.+...+.++
T Consensus 68 d~vila~k~---~~~~~~~~~l~~~l~~~ 93 (304)
T PRK06522 68 DLVILAVKA---YQLPAALPSLAPLLGPD 93 (304)
T ss_pred CEEEEeccc---ccHHHHHHHHhhhcCCC
Confidence 999986433 24677788887777654
No 497
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=39.21 E-value=72 Score=28.79 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=29.2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHhCCEEEEEeh-HhHHHHHHHHHH
Q 023457 104 GCQLNILELGSGTGLVGMAAAAILGAKVTVTDL-PHVLTNLQFNVD 148 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~~~~V~~tD~-~~~l~~~~~n~~ 148 (282)
..|.+|.-+|+|--.+--.+ .+.+++|.++|+ +.-+.+-+-.++
T Consensus 62 g~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 45779999999854232233 356799999999 775555444443
No 498
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.17 E-value=2.1e+02 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=18.4
Q ss_pred cEEEeCCCC-CH-HHHHHHHHhCCEEEEEeh
Q 023457 108 NILELGSGT-GL-VGMAAAAILGAKVTVTDL 136 (282)
Q Consensus 108 ~VLELGcGt-G~-~si~la~~~~~~V~~tD~ 136 (282)
+|+=+|||. |. +...+++.+-.+++.+|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 477889973 44 344444333367999997
No 499
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=39.14 E-value=2.3e+02 Score=23.68 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEehHhHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh---
Q 023457 104 GCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDLPHVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA--- 177 (282)
Q Consensus 104 ~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~~~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~--- 177 (282)
.++++||=.|++.| +|..+++.+ +.+|++++... ...+...+... ...+.+...|..+ ...+.
T Consensus 3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~-------~~~~~~~~~D~~~--~~~~~~~~ 71 (248)
T TIGR01832 3 LEGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEAL-------GRRFLSLTADLSD--IEAIKALV 71 (248)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhc-------CCceEEEECCCCC--HHHHHHHH
Confidence 45889999998655 455555444 57899998722 12222222221 2345666666665 22221
Q ss_pred ----hcCCCccEEEEcCcc
Q 023457 178 ----VVGREFDVILASDVV 192 (282)
Q Consensus 178 ----~~~~~fD~Ii~sd~l 192 (282)
......|+||.+--.
T Consensus 72 ~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 72 DSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 112468999876433
No 500
>PRK06114 short chain dehydrogenase; Provisional
Probab=39.01 E-value=2.4e+02 Score=23.83 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=45.1
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHh---CCEEEEEeh-H-hHHHHHHHHHHhcccccccCCCcEEEEEEEeCCCCccchh
Q 023457 103 NGCQLNILELGSGTGLVGMAAAAIL---GAKVTVTDL-P-HVLTNLQFNVDANAGLISLRGGSVHVAPLRWGEAEANDVA 177 (282)
Q Consensus 103 ~~~g~~VLELGcGtG~~si~la~~~---~~~V~~tD~-~-~~l~~~~~n~~~n~~~~~~~~~~v~~~~ld~~~~~~~~~~ 177 (282)
..+++++|=.|++.| +|..+++.+ +.+|++++. + ..++.+.+.+... ..++.....|..+ ...+.
T Consensus 5 ~~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~--~~~i~ 74 (254)
T PRK06114 5 DLDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA-------GRRAIQIAADVTS--KADLR 74 (254)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------CCceEEEEcCCCC--HHHHH
Confidence 346889998886554 555555443 579999987 3 3344444444321 2245555666655 22211
Q ss_pred -------hcCCCccEEEEcCcc
Q 023457 178 -------VVGREFDVILASDVV 192 (282)
Q Consensus 178 -------~~~~~fD~Ii~sd~l 192 (282)
....+.|++|.+-.+
T Consensus 75 ~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 75 AAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 112467999876544
Done!