BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023458
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P23|A Chain A, Crystal Structure Of Human Fgf19
 pdb|2P23|B Chain B, Crystal Structure Of Human Fgf19
          Length = 194

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 200 RTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQ 248
           R   +N Y S  H +    +S K  +LY  +GF P S   P   + P++
Sbjct: 105 RPDGYNVYRSEKHRLPVSLSSAKQRQLYKNRGFLPLSHFLPMLPMVPEE 153


>pdb|1PWA|A Chain A, Crystal Structure Of Fibroblast Growth Factor 19
          Length = 162

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 200 RTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQ 248
           R   +N Y S  H +    +S K  +LY  +GF P S   P   + P++
Sbjct: 93  RPDGYNVYRSEKHRLPVSLSSAKQRQLYKNRGFLPLSHFLPMLPMVPEE 141


>pdb|2L4D|A Chain A, Cytochrome C Domain Of Pp3183 Protein From Pseudomonas
           Putida
          Length = 110

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 246 PDQMGVVNQRDADLLFMWHMQRDQKRNQK 274
           PD +GV  QRDA+ L  W    DQ   +K
Sbjct: 32  PDLLGVTRQRDANWLVRWLKVPDQMLAEK 60


>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
 pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
 pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
 pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
          Length = 249

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 177 MEDSETHNLKRETISQQ--YQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLY 229
           +E  E  N++  TIS Q  Y+A    T +F N  +   ++  GN   +   +YLY
Sbjct: 75  LELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLY 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,440,529
Number of Sequences: 62578
Number of extensions: 419217
Number of successful extensions: 802
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)