Query 023459
Match_columns 282
No_of_seqs 150 out of 159
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3883 Uncharacterized protei 99.0 7E-08 1.5E-12 89.8 19.0 140 31-197 60-217 (265)
2 KOG0250 DNA repair protein RAD 98.8 3E-07 6.5E-12 98.1 20.1 200 19-240 272-471 (1074)
3 PRK11637 AmiB activator; Provi 98.6 2.6E-05 5.6E-10 76.7 24.9 154 45-210 90-252 (428)
4 TIGR02169 SMC_prok_A chromosom 98.5 6.5E-05 1.4E-09 80.5 25.6 24 204-227 475-498 (1164)
5 TIGR02169 SMC_prok_A chromosom 98.4 9.2E-05 2E-09 79.3 25.1 61 172-232 436-496 (1164)
6 TIGR02168 SMC_prok_B chromosom 98.2 0.00039 8.3E-09 74.2 24.8 29 205-233 908-936 (1179)
7 COG1196 Smc Chromosome segrega 98.2 0.00039 8.4E-09 76.4 24.9 54 97-150 377-430 (1163)
8 KOG0995 Centromere-associated 98.2 0.00034 7.5E-09 71.0 22.0 188 35-247 226-416 (581)
9 TIGR02168 SMC_prok_B chromosom 98.2 0.0006 1.3E-08 72.8 25.2 46 103-148 803-848 (1179)
10 PF00261 Tropomyosin: Tropomyo 98.2 0.0019 4E-08 59.1 24.9 34 117-150 127-160 (237)
11 PRK02224 chromosome segregatio 98.2 0.00067 1.4E-08 71.8 24.1 21 204-224 376-396 (880)
12 KOG0250 DNA repair protein RAD 98.1 0.00049 1.1E-08 74.1 21.0 201 31-261 296-503 (1074)
13 COG1196 Smc Chromosome segrega 98.1 0.0016 3.5E-08 71.7 25.5 111 104-225 377-487 (1163)
14 TIGR00606 rad50 rad50. This fa 98.0 0.0021 4.6E-08 71.5 25.5 196 31-232 745-961 (1311)
15 PRK02224 chromosome segregatio 98.0 0.0015 3.2E-08 69.3 23.1 28 99-126 275-302 (880)
16 PHA02562 46 endonuclease subun 98.0 0.0037 8.1E-08 62.6 24.7 97 31-127 175-279 (562)
17 PF07888 CALCOCO1: Calcium bin 98.0 0.0029 6.3E-08 64.6 23.6 104 31-144 137-240 (546)
18 COG1340 Uncharacterized archae 97.9 0.0051 1.1E-07 58.4 23.0 184 35-233 32-249 (294)
19 PF00261 Tropomyosin: Tropomyo 97.9 0.0016 3.5E-08 59.5 19.2 105 107-222 110-214 (237)
20 PRK03918 chromosome segregatio 97.9 0.0089 1.9E-07 63.2 26.6 30 203-232 403-432 (880)
21 PRK11637 AmiB activator; Provi 97.9 0.0083 1.8E-07 59.1 24.3 35 31-65 48-82 (428)
22 PHA02562 46 endonuclease subun 97.9 0.0026 5.6E-08 63.7 20.8 33 32-64 215-247 (562)
23 COG1579 Zn-ribbon protein, pos 97.8 0.004 8.7E-08 57.6 20.0 30 165-194 144-173 (239)
24 KOG0161 Myosin class II heavy 97.7 0.0064 1.4E-07 69.7 23.2 181 41-224 954-1144(1930)
25 KOG0161 Myosin class II heavy 97.7 0.01 2.3E-07 68.1 24.1 67 81-147 963-1029(1930)
26 PRK04778 septation ring format 97.7 0.0087 1.9E-07 61.3 21.4 131 82-216 289-429 (569)
27 KOG0996 Structural maintenance 97.6 0.0074 1.6E-07 65.8 21.1 157 73-233 832-1012(1293)
28 TIGR00606 rad50 rad50. This fa 97.6 0.015 3.2E-07 64.9 24.3 99 112-221 972-1091(1311)
29 PRK01156 chromosome segregatio 97.6 0.033 7.2E-07 59.4 26.0 28 205-232 416-443 (895)
30 PRK04778 septation ring format 97.6 0.019 4E-07 58.9 23.0 158 71-230 351-508 (569)
31 KOG1003 Actin filament-coating 97.6 0.033 7.3E-07 50.2 21.3 178 31-233 5-186 (205)
32 PRK03918 chromosome segregatio 97.6 0.044 9.5E-07 58.0 25.5 25 169-193 306-330 (880)
33 PF12718 Tropomyosin_1: Tropom 97.5 0.02 4.4E-07 48.9 17.8 30 121-150 77-106 (143)
34 PRK01156 chromosome segregatio 97.5 0.06 1.3E-06 57.5 25.2 30 33-62 472-501 (895)
35 COG1579 Zn-ribbon protein, pos 97.4 0.0087 1.9E-07 55.4 16.2 36 112-147 47-82 (239)
36 PF07888 CALCOCO1: Calcium bin 97.4 0.026 5.7E-07 57.7 20.9 175 31-226 144-318 (546)
37 PF12718 Tropomyosin_1: Tropom 97.4 0.021 4.5E-07 48.8 16.6 35 115-149 78-112 (143)
38 PF15619 Lebercilin: Ciliary p 97.4 0.089 1.9E-06 47.2 21.2 169 44-225 12-191 (194)
39 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.3 0.026 5.6E-07 47.3 16.6 129 36-195 2-130 (132)
40 PF10174 Cast: RIM-binding pro 97.3 0.1 2.2E-06 55.7 24.6 111 34-147 298-408 (775)
41 KOG0964 Structural maintenance 97.3 0.063 1.4E-06 58.0 22.5 163 35-199 256-426 (1200)
42 KOG0996 Structural maintenance 97.3 0.068 1.5E-06 58.7 22.7 119 32-150 329-452 (1293)
43 PRK09039 hypothetical protein; 97.2 0.052 1.1E-06 52.5 19.5 51 100-150 113-163 (343)
44 KOG0979 Structural maintenance 97.2 0.051 1.1E-06 58.8 20.7 116 31-150 182-302 (1072)
45 KOG0933 Structural maintenance 97.2 0.079 1.7E-06 57.5 21.8 213 31-254 742-963 (1174)
46 PF00038 Filament: Intermediat 97.2 0.2 4.3E-06 46.9 22.3 12 78-89 120-131 (312)
47 PF05701 WEMBL: Weak chloropla 97.1 0.15 3.2E-06 52.0 22.5 140 83-223 282-425 (522)
48 COG1340 Uncharacterized archae 97.1 0.16 3.5E-06 48.4 21.0 53 82-134 48-100 (294)
49 TIGR03007 pepcterm_ChnLen poly 97.1 0.32 7E-06 48.4 24.3 115 110-224 254-381 (498)
50 KOG0971 Microtubule-associated 97.0 0.22 4.8E-06 53.7 22.8 99 37-135 325-435 (1243)
51 KOG1029 Endocytic adaptor prot 97.0 0.06 1.3E-06 57.1 18.5 140 32-199 432-578 (1118)
52 PRK04863 mukB cell division pr 97.0 0.34 7.4E-06 55.2 25.7 34 201-234 445-478 (1486)
53 PF09726 Macoilin: Transmembra 97.0 0.24 5.3E-06 52.3 23.0 103 30-149 418-520 (697)
54 KOG0977 Nuclear envelope prote 96.9 0.18 3.9E-06 51.7 21.0 36 36-71 41-76 (546)
55 PF10174 Cast: RIM-binding pro 96.9 0.27 5.8E-06 52.6 22.7 58 31-88 365-423 (775)
56 TIGR01005 eps_transp_fam exopo 96.9 0.33 7.2E-06 51.0 23.2 108 108-225 293-403 (754)
57 TIGR03017 EpsF chain length de 96.9 0.4 8.7E-06 46.9 22.2 111 105-225 256-369 (444)
58 PF10473 CENP-F_leu_zip: Leuci 96.8 0.2 4.3E-06 43.0 17.3 53 100-152 49-101 (140)
59 PF00038 Filament: Intermediat 96.8 0.43 9.4E-06 44.6 22.9 43 71-113 64-106 (312)
60 KOG0971 Microtubule-associated 96.8 0.49 1.1E-05 51.2 23.4 200 31-234 232-456 (1243)
61 PF04849 HAP1_N: HAP1 N-termin 96.8 0.12 2.6E-06 49.6 17.3 143 31-218 161-303 (306)
62 PF12128 DUF3584: Protein of u 96.8 0.39 8.5E-06 53.5 23.9 182 34-225 604-791 (1201)
63 COG4942 Membrane-bound metallo 96.8 0.6 1.3E-05 46.6 22.5 13 230-242 294-306 (420)
64 PF06160 EzrA: Septation ring 96.8 0.47 1E-05 48.8 22.7 143 75-221 278-430 (560)
65 KOG0964 Structural maintenance 96.8 0.28 6.1E-06 53.3 21.4 28 206-233 869-896 (1200)
66 COG3883 Uncharacterized protei 96.7 0.15 3.3E-06 47.9 17.1 153 34-200 49-213 (265)
67 PF05010 TACC: Transforming ac 96.7 0.47 1E-05 43.2 24.5 194 29-232 8-202 (207)
68 PF15070 GOLGA2L5: Putative go 96.7 0.39 8.5E-06 50.1 21.5 108 34-151 19-135 (617)
69 COG5185 HEC1 Protein involved 96.7 0.46 9.9E-06 48.2 20.8 181 37-246 264-444 (622)
70 PF05701 WEMBL: Weak chloropla 96.7 0.64 1.4E-05 47.4 22.6 32 201-232 396-427 (522)
71 TIGR02680 conserved hypothetic 96.6 1.3 2.7E-05 50.3 26.3 78 115-199 880-957 (1353)
72 PRK04863 mukB cell division pr 96.6 0.4 8.7E-06 54.7 22.3 22 205-226 456-477 (1486)
73 KOG0933 Structural maintenance 96.6 0.6 1.3E-05 51.0 22.3 61 90-150 781-841 (1174)
74 PF10473 CENP-F_leu_zip: Leuci 96.6 0.4 8.8E-06 41.1 17.4 105 36-150 9-113 (140)
75 PF08317 Spc7: Spc7 kinetochor 96.5 0.64 1.4E-05 44.5 20.7 16 211-226 275-290 (325)
76 PF08317 Spc7: Spc7 kinetochor 96.5 0.11 2.5E-06 49.6 15.5 15 75-89 184-198 (325)
77 PF09726 Macoilin: Transmembra 96.5 0.14 3E-06 54.1 17.3 44 101-144 458-501 (697)
78 TIGR01000 bacteriocin_acc bact 96.5 0.83 1.8E-05 45.4 22.1 42 201-244 287-328 (457)
79 KOG4674 Uncharacterized conser 96.5 0.82 1.8E-05 52.7 24.0 194 32-235 54-268 (1822)
80 KOG4643 Uncharacterized coiled 96.5 0.63 1.4E-05 50.8 21.9 49 101-149 465-513 (1195)
81 PRK09039 hypothetical protein; 96.5 0.17 3.7E-06 49.0 16.5 72 79-150 113-184 (343)
82 KOG0018 Structural maintenance 96.4 0.41 8.9E-06 52.4 20.0 34 31-64 228-261 (1141)
83 KOG0995 Centromere-associated 96.4 0.34 7.4E-06 49.8 18.3 91 35-135 233-326 (581)
84 PF06008 Laminin_I: Laminin Do 96.4 0.62 1.4E-05 43.0 18.9 54 33-89 48-101 (264)
85 KOG4674 Uncharacterized conser 96.2 1.8 4E-05 50.0 24.3 195 31-235 655-888 (1822)
86 KOG0994 Extracellular matrix g 96.1 2.2 4.7E-05 47.6 23.5 124 32-155 1513-1636(1758)
87 KOG0977 Nuclear envelope prote 96.1 1.6 3.5E-05 45.0 21.7 120 31-150 43-181 (546)
88 PF06160 EzrA: Septation ring 96.1 2.1 4.5E-05 44.1 23.2 194 32-227 308-501 (560)
89 PF10168 Nup88: Nuclear pore c 96.0 0.33 7.2E-06 51.5 16.8 145 70-228 560-715 (717)
90 KOG0978 E3 ubiquitin ligase in 96.0 2.6 5.6E-05 44.7 22.8 89 97-196 497-585 (698)
91 TIGR01843 type_I_hlyD type I s 95.9 0.95 2.1E-05 43.3 18.2 33 35-67 135-167 (423)
92 PF12128 DUF3584: Protein of u 95.9 0.81 1.8E-05 51.1 19.8 31 17-49 228-258 (1201)
93 KOG0018 Structural maintenance 95.9 0.91 2E-05 49.8 19.3 37 31-67 235-271 (1141)
94 KOG0804 Cytoplasmic Zn-finger 95.8 0.31 6.8E-06 48.9 14.5 126 82-230 328-453 (493)
95 COG4372 Uncharacterized protei 95.7 1.5 3.3E-05 43.6 18.8 117 59-196 75-191 (499)
96 TIGR01843 type_I_hlyD type I s 95.6 2.3 4.9E-05 40.7 22.3 43 201-245 242-284 (423)
97 TIGR03185 DNA_S_dndD DNA sulfu 95.5 3.2 6.9E-05 43.2 21.6 38 31-68 210-247 (650)
98 KOG1029 Endocytic adaptor prot 95.5 1.4 3.1E-05 47.2 18.6 127 73-199 435-564 (1118)
99 PF14662 CCDC155: Coiled-coil 95.4 1.9 4.2E-05 38.9 20.9 130 82-226 50-186 (193)
100 PF13514 AAA_27: AAA domain 95.4 5.7 0.00012 44.0 24.8 38 113-150 892-929 (1111)
101 PF13851 GAS: Growth-arrest sp 95.3 2 4.4E-05 38.6 20.6 117 19-150 17-133 (201)
102 KOG4643 Uncharacterized coiled 95.3 6 0.00013 43.6 22.7 115 35-149 413-534 (1195)
103 PF15619 Lebercilin: Ciliary p 95.2 2.2 4.8E-05 38.3 18.7 32 119-150 120-151 (194)
104 PF15290 Syntaphilin: Golgi-lo 95.2 0.17 3.8E-06 47.9 9.9 91 36-143 67-164 (305)
105 smart00787 Spc7 Spc7 kinetocho 95.2 1.1 2.5E-05 42.9 15.7 76 75-150 179-258 (312)
106 KOG0612 Rho-associated, coiled 95.0 5.1 0.00011 44.9 21.7 36 164-199 617-652 (1317)
107 PF12325 TMF_TATA_bd: TATA ele 94.9 0.97 2.1E-05 37.8 12.7 84 32-115 25-108 (120)
108 KOG0976 Rho/Rac1-interacting s 94.9 6.2 0.00013 42.8 21.1 92 32-123 101-196 (1265)
109 KOG0946 ER-Golgi vesicle-tethe 94.9 3.4 7.5E-05 44.5 19.3 65 39-113 652-716 (970)
110 TIGR02680 conserved hypothetic 94.8 5.4 0.00012 45.4 22.1 90 54-150 233-323 (1353)
111 smart00787 Spc7 Spc7 kinetocho 94.7 4.2 9.1E-05 39.1 20.4 27 45-71 138-164 (312)
112 PF05667 DUF812: Protein of un 94.7 6.3 0.00014 41.2 20.6 30 167-196 451-480 (594)
113 PF04156 IncA: IncA protein; 94.6 1.8 3.8E-05 37.7 14.3 33 32-64 83-115 (191)
114 COG5185 HEC1 Protein involved 94.6 4.5 9.8E-05 41.3 18.5 34 101-134 328-361 (622)
115 COG2433 Uncharacterized conser 94.6 0.91 2E-05 47.2 14.0 45 106-150 418-462 (652)
116 PF14662 CCDC155: Coiled-coil 94.5 3.5 7.5E-05 37.2 21.0 161 33-199 18-180 (193)
117 PF13870 DUF4201: Domain of un 94.5 2.9 6.3E-05 36.3 15.4 153 31-193 7-175 (177)
118 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 2.5 5.3E-05 35.3 15.1 28 165-192 93-120 (132)
119 TIGR01005 eps_transp_fam exopo 94.3 8.2 0.00018 40.7 23.7 39 182-220 350-391 (754)
120 TIGR03007 pepcterm_ChnLen poly 94.3 4.1 8.8E-05 40.6 17.8 30 31-60 205-234 (498)
121 PF05667 DUF812: Protein of un 94.3 8.1 0.00018 40.4 24.2 29 36-64 327-355 (594)
122 PF13166 AAA_13: AAA domain 94.2 8 0.00017 40.2 21.0 24 205-228 438-461 (712)
123 TIGR00634 recN DNA repair prot 94.1 3.6 7.9E-05 42.1 17.4 82 112-197 275-359 (563)
124 KOG0963 Transcription factor/C 94.1 8.9 0.00019 40.1 20.5 29 166-194 281-309 (629)
125 PF01576 Myosin_tail_1: Myosin 94.0 0.015 3.2E-07 62.5 0.0 78 75-152 658-735 (859)
126 PF13166 AAA_13: AAA domain 93.9 9.4 0.0002 39.7 23.0 57 174-230 414-470 (712)
127 PF04156 IncA: IncA protein; 93.8 3 6.5E-05 36.3 14.2 28 37-64 81-108 (191)
128 KOG0976 Rho/Rac1-interacting s 93.7 12 0.00027 40.6 22.6 100 33-142 88-187 (1265)
129 PLN03229 acetyl-coenzyme A car 93.7 12 0.00025 40.2 24.3 74 168-242 647-741 (762)
130 COG4942 Membrane-bound metallo 93.5 9.3 0.0002 38.4 23.5 10 257-266 295-304 (420)
131 PF13863 DUF4200: Domain of un 93.4 3.5 7.7E-05 33.4 13.5 98 47-150 10-107 (126)
132 PF13851 GAS: Growth-arrest sp 93.4 5.8 0.00013 35.7 16.8 92 100-199 31-122 (201)
133 PF09789 DUF2353: Uncharacteri 93.2 7 0.00015 37.9 16.6 80 163-243 126-235 (319)
134 KOG0979 Structural maintenance 93.2 16 0.00035 40.3 21.0 145 69-224 203-358 (1072)
135 KOG0978 E3 ubiquitin ligase in 93.2 14 0.0003 39.4 23.9 135 79-220 465-602 (698)
136 PF08614 ATG16: Autophagy prot 93.2 0.6 1.3E-05 41.4 8.7 69 82-150 74-142 (194)
137 PF10267 Tmemb_cc2: Predicted 93.2 3.7 8.1E-05 40.8 15.0 98 118-225 220-318 (395)
138 PF04111 APG6: Autophagy prote 93.1 2.4 5.1E-05 40.7 13.3 26 201-226 109-134 (314)
139 PRK10869 recombination and rep 93.0 8.8 0.00019 39.5 18.0 59 137-199 295-356 (553)
140 PF09304 Cortex-I_coil: Cortex 93.0 3.7 8.1E-05 33.8 12.3 47 40-89 5-51 (107)
141 PF13870 DUF4201: Domain of un 93.0 5.7 0.00012 34.5 21.2 110 108-228 47-175 (177)
142 PRK09343 prefoldin subunit bet 93.0 3 6.5E-05 34.5 12.1 41 110-150 71-111 (121)
143 KOG0962 DNA repair protein RAD 92.9 20 0.00044 40.6 24.3 122 31-152 231-353 (1294)
144 PF14992 TMCO5: TMCO5 family 92.8 3.7 8.1E-05 39.1 13.8 124 31-196 12-135 (280)
145 KOG1003 Actin filament-coating 92.8 7.4 0.00016 35.4 23.2 121 31-151 12-136 (205)
146 PLN02939 transferase, transfer 92.7 15 0.00033 40.5 20.0 158 76-237 195-401 (977)
147 PF09730 BicD: Microtubule-ass 92.7 16 0.00035 39.0 20.2 94 31-148 28-121 (717)
148 PF15070 GOLGA2L5: Putative go 92.7 15 0.00033 38.6 26.9 77 107-194 164-240 (617)
149 KOG0994 Extracellular matrix g 92.7 18 0.00039 40.8 20.2 115 38-152 1512-1626(1758)
150 PF03962 Mnd1: Mnd1 family; I 92.6 4.5 9.8E-05 36.0 13.5 121 17-170 54-178 (188)
151 COG2433 Uncharacterized conser 92.6 1.3 2.7E-05 46.2 11.1 34 117-150 474-507 (652)
152 PF10168 Nup88: Nuclear pore c 92.5 8.8 0.00019 41.0 17.7 147 35-193 563-715 (717)
153 TIGR02338 gimC_beta prefoldin, 92.5 3.5 7.5E-05 33.3 11.6 42 109-150 66-107 (110)
154 PF02403 Seryl_tRNA_N: Seryl-t 92.5 2.2 4.8E-05 34.0 10.4 80 71-150 16-100 (108)
155 KOG0963 Transcription factor/C 92.5 16 0.00034 38.4 22.5 34 31-64 122-155 (629)
156 PF04111 APG6: Autophagy prote 92.5 2.4 5.2E-05 40.6 12.4 48 103-150 43-90 (314)
157 KOG4809 Rab6 GTPase-interactin 92.4 11 0.00024 39.2 17.2 71 80-150 343-413 (654)
158 KOG0999 Microtubule-associated 92.3 16 0.00035 38.1 20.8 31 170-200 170-200 (772)
159 KOG3850 Predicted membrane pro 92.3 7.3 0.00016 38.8 15.4 107 105-221 262-369 (455)
160 COG4477 EzrA Negative regulato 92.3 16 0.00034 37.9 20.7 132 82-217 288-429 (570)
161 PF14915 CCDC144C: CCDC144C pr 92.1 12 0.00025 36.1 20.4 29 214-242 237-265 (305)
162 PF12325 TMF_TATA_bd: TATA ele 92.0 3.7 7.9E-05 34.3 11.4 39 31-69 17-55 (120)
163 KOG0980 Actin-binding protein 92.0 22 0.00047 38.9 22.1 9 262-270 586-594 (980)
164 PF07106 TBPIP: Tat binding pr 92.0 4.6 0.0001 34.8 12.5 68 118-194 73-140 (169)
165 PF10498 IFT57: Intra-flagella 91.9 4.8 0.0001 39.5 13.9 90 32-127 222-311 (359)
166 KOG0946 ER-Golgi vesicle-tethe 91.9 15 0.00034 39.7 18.2 203 29-243 656-872 (970)
167 PF14915 CCDC144C: CCDC144C pr 91.9 12 0.00027 35.9 23.0 190 35-230 4-204 (305)
168 KOG0804 Cytoplasmic Zn-finger 91.8 6.7 0.00014 39.7 14.8 28 166-193 424-451 (493)
169 PF05622 HOOK: HOOK protein; 91.5 0.054 1.2E-06 56.9 0.0 32 82-113 274-308 (713)
170 cd00632 Prefoldin_beta Prefold 91.5 6.1 0.00013 31.5 12.1 43 108-150 61-103 (105)
171 COG4372 Uncharacterized protei 91.5 17 0.00036 36.5 23.5 104 21-129 74-177 (499)
172 PF01576 Myosin_tail_1: Myosin 91.4 0.057 1.2E-06 58.1 0.0 70 81-150 242-311 (859)
173 KOG0612 Rho-associated, coiled 91.4 29 0.00063 39.2 21.6 31 164-194 750-780 (1317)
174 PF05911 DUF869: Plant protein 91.4 14 0.0003 39.8 17.6 53 33-95 592-644 (769)
175 PF10186 Atg14: UV radiation r 91.3 11 0.00025 34.3 19.7 26 208-233 136-161 (302)
176 PF11559 ADIP: Afadin- and alp 91.3 8.2 0.00018 32.6 14.8 26 123-148 65-90 (151)
177 KOG1899 LAR transmembrane tyro 91.2 11 0.00025 39.7 16.1 39 31-69 112-157 (861)
178 PF10186 Atg14: UV radiation r 91.2 12 0.00025 34.2 16.3 25 39-63 22-46 (302)
179 TIGR03185 DNA_S_dndD DNA sulfu 90.8 23 0.0005 36.9 23.6 39 33-71 205-243 (650)
180 PF04582 Reo_sigmaC: Reovirus 90.8 0.46 1E-05 46.0 5.5 71 82-152 84-154 (326)
181 PF07798 DUF1640: Protein of u 90.6 11 0.00024 32.9 18.2 15 80-94 32-46 (177)
182 KOG1853 LIS1-interacting prote 90.5 16 0.00035 34.7 19.8 137 34-197 24-160 (333)
183 PF08614 ATG16: Autophagy prot 90.5 3 6.5E-05 36.9 10.1 38 108-145 107-144 (194)
184 KOG0243 Kinesin-like protein [ 90.5 17 0.00037 40.3 17.4 19 53-71 406-424 (1041)
185 PF05911 DUF869: Plant protein 90.3 24 0.00051 38.2 18.1 108 115-227 90-205 (769)
186 PF07106 TBPIP: Tat binding pr 90.2 2.1 4.6E-05 36.9 8.7 49 17-65 57-107 (169)
187 PF09730 BicD: Microtubule-ass 90.1 30 0.00065 37.1 19.7 41 31-71 35-75 (717)
188 PF12329 TMF_DNA_bd: TATA elem 89.9 2.7 5.8E-05 32.1 8.0 68 168-235 3-70 (74)
189 KOG4809 Rab6 GTPase-interactin 89.7 28 0.00061 36.3 18.9 38 208-247 545-582 (654)
190 PF05266 DUF724: Protein of un 89.6 4.8 0.0001 36.1 10.7 75 114-199 107-181 (190)
191 PF09755 DUF2046: Uncharacteri 89.5 21 0.00046 34.5 22.7 61 166-226 138-199 (310)
192 PF15066 CAGE1: Cancer-associa 89.4 27 0.00059 35.7 18.2 156 42-229 315-477 (527)
193 PF09789 DUF2353: Uncharacteri 89.2 19 0.0004 35.0 15.0 108 33-150 68-180 (319)
194 PF05557 MAD: Mitotic checkpoi 89.0 1.5 3.1E-05 46.4 8.0 28 168-195 508-535 (722)
195 PF06818 Fez1: Fez1; InterPro 89.0 18 0.00038 33.0 15.5 32 36-67 9-40 (202)
196 KOG0980 Actin-binding protein 88.9 40 0.00087 37.0 23.4 56 95-150 423-485 (980)
197 KOG4673 Transcription factor T 88.8 37 0.0008 36.5 21.5 22 31-52 347-368 (961)
198 PF07889 DUF1664: Protein of u 88.8 6.7 0.00014 33.1 10.3 38 113-150 85-122 (126)
199 PF13863 DUF4200: Domain of un 88.6 12 0.00025 30.4 14.0 104 36-145 6-109 (126)
200 PF09738 DUF2051: Double stran 88.5 6.1 0.00013 38.0 11.2 106 135-260 81-194 (302)
201 KOG0962 DNA repair protein RAD 88.5 51 0.0011 37.6 23.2 25 201-225 1011-1035(1294)
202 PF05622 HOOK: HOOK protein; 88.5 0.14 2.9E-06 54.0 0.0 38 75-112 239-276 (713)
203 PF12329 TMF_DNA_bd: TATA elem 88.3 8.4 0.00018 29.4 9.7 66 108-184 3-68 (74)
204 KOG0999 Microtubule-associated 88.2 37 0.0008 35.6 21.3 173 33-212 46-240 (772)
205 PF05384 DegS: Sensor protein 88.1 17 0.00038 31.8 18.2 57 92-148 16-72 (159)
206 PF04977 DivIC: Septum formati 87.9 2.5 5.4E-05 31.3 6.6 45 31-75 18-62 (80)
207 PRK15422 septal ring assembly 87.8 6.7 0.00015 30.7 8.9 55 170-224 18-72 (79)
208 KOG0243 Kinesin-like protein [ 87.6 52 0.0011 36.7 21.8 109 80-199 453-561 (1041)
209 PF02994 Transposase_22: L1 tr 87.6 1.4 3E-05 43.2 6.3 45 107-151 141-185 (370)
210 PRK00888 ftsB cell division pr 87.5 2.2 4.7E-05 34.7 6.5 41 31-71 28-68 (105)
211 COG3206 GumC Uncharacterized p 87.5 32 0.00069 34.2 25.6 147 72-228 250-403 (458)
212 COG1842 PspA Phage shock prote 87.5 23 0.0005 32.6 19.5 40 32-71 19-58 (225)
213 PF06005 DUF904: Protein of un 87.2 8.7 0.00019 29.3 9.2 25 170-194 18-42 (72)
214 PF10211 Ax_dynein_light: Axon 87.2 21 0.00046 31.8 13.4 33 119-151 122-154 (189)
215 PF04912 Dynamitin: Dynamitin 87.2 31 0.00067 33.8 15.5 56 31-88 210-281 (388)
216 KOG1853 LIS1-interacting prote 87.2 28 0.00061 33.1 15.7 96 42-150 50-145 (333)
217 KOG0972 Huntingtin interacting 87.1 7.8 0.00017 37.5 10.7 86 41-132 238-323 (384)
218 PF15450 DUF4631: Domain of un 87.0 40 0.00088 34.8 20.3 65 24-94 331-395 (531)
219 PF12777 MT: Microtubule-bindi 86.7 0.82 1.8E-05 44.0 4.2 63 171-233 229-291 (344)
220 PRK10884 SH3 domain-containing 86.7 9.1 0.0002 34.7 10.7 30 166-195 121-150 (206)
221 COG1730 GIM5 Predicted prefold 86.5 6.5 0.00014 34.0 9.1 46 31-76 7-52 (145)
222 PF08647 BRE1: BRE1 E3 ubiquit 86.4 14 0.00031 29.2 10.5 29 91-119 47-75 (96)
223 PF06785 UPF0242: Uncharacteri 86.2 36 0.00079 33.5 18.2 116 99-232 109-228 (401)
224 PRK10929 putative mechanosensi 86.2 59 0.0013 36.7 18.4 32 31-62 59-90 (1109)
225 TIGR01000 bacteriocin_acc bact 86.1 38 0.00083 33.7 20.1 60 165-224 245-317 (457)
226 KOG4673 Transcription factor T 86.1 53 0.0012 35.3 21.0 30 35-64 407-436 (961)
227 PF05266 DUF724: Protein of un 86.1 12 0.00027 33.5 11.1 78 108-196 108-185 (190)
228 KOG4593 Mitotic checkpoint pro 85.8 54 0.0012 35.1 23.2 31 201-231 271-301 (716)
229 PF02994 Transposase_22: L1 tr 85.6 2.2 4.9E-05 41.7 6.6 38 108-145 149-186 (370)
230 PRK03947 prefoldin subunit alp 85.5 12 0.00025 31.2 10.1 41 31-71 7-47 (140)
231 PRK10884 SH3 domain-containing 85.5 11 0.00024 34.2 10.6 26 34-59 90-115 (206)
232 PF07851 TMPIT: TMPIT-like pro 85.5 20 0.00043 35.0 12.9 88 122-227 2-90 (330)
233 PF10146 zf-C4H2: Zinc finger- 85.4 28 0.00062 32.1 13.3 51 100-150 36-86 (230)
234 KOG4360 Uncharacterized coiled 85.3 40 0.00087 34.9 15.2 41 110-150 226-266 (596)
235 KOG4360 Uncharacterized coiled 85.3 50 0.0011 34.2 16.9 43 101-150 210-252 (596)
236 PF03962 Mnd1: Mnd1 family; I 85.0 22 0.00048 31.7 12.1 100 121-235 66-165 (188)
237 TIGR02231 conserved hypothetic 85.0 8.8 0.00019 38.9 10.8 45 106-150 127-171 (525)
238 PRK09841 cryptic autophosphory 84.8 58 0.0013 34.6 17.8 24 201-224 373-396 (726)
239 PF09304 Cortex-I_coil: Cortex 84.6 21 0.00046 29.4 12.3 50 34-93 13-62 (107)
240 PF05483 SCP-1: Synaptonemal c 84.6 61 0.0013 34.7 21.6 34 31-64 528-561 (786)
241 PF15294 Leu_zip: Leucine zipp 84.4 39 0.00084 32.3 15.6 142 31-186 126-276 (278)
242 PF10498 IFT57: Intra-flagella 84.4 42 0.00092 33.0 14.8 28 205-232 328-355 (359)
243 PF09787 Golgin_A5: Golgin sub 84.3 51 0.0011 33.6 18.1 34 166-199 277-310 (511)
244 PF06008 Laminin_I: Laminin Do 84.2 34 0.00075 31.5 23.0 122 18-151 14-140 (264)
245 KOG0239 Kinesin (KAR3 subfamil 84.1 48 0.001 35.3 15.9 29 34-62 179-207 (670)
246 PF11932 DUF3450: Protein of u 83.9 35 0.00075 31.3 13.8 43 108-150 54-96 (251)
247 KOG4677 Golgi integral membran 83.8 55 0.0012 33.5 16.9 94 55-150 263-356 (554)
248 PF12777 MT: Microtubule-bindi 83.8 15 0.00032 35.4 11.3 22 257-278 110-131 (344)
249 PLN03229 acetyl-coenzyme A car 83.6 62 0.0013 34.9 16.4 15 160-174 555-569 (762)
250 TIGR00634 recN DNA repair prot 83.4 58 0.0012 33.5 20.0 44 181-224 326-372 (563)
251 PF05557 MAD: Mitotic checkpoi 83.4 0.36 7.7E-06 50.9 0.0 34 201-234 277-310 (722)
252 COG4026 Uncharacterized protei 83.2 27 0.00057 32.7 12.0 58 93-150 125-182 (290)
253 cd00632 Prefoldin_beta Prefold 82.5 23 0.0005 28.2 10.4 32 113-144 9-40 (105)
254 PF10146 zf-C4H2: Zinc finger- 82.5 41 0.00088 31.1 13.6 44 184-227 60-103 (230)
255 COG1382 GimC Prefoldin, chaper 82.1 29 0.00063 29.1 11.6 38 107-144 10-47 (119)
256 cd00890 Prefoldin Prefoldin is 81.8 4.7 0.0001 32.5 6.1 31 35-65 4-34 (129)
257 KOG3501 Molecular chaperone Pr 81.7 28 0.00061 28.7 12.9 44 107-150 64-107 (114)
258 PF04728 LPP: Lipoprotein leuc 81.4 11 0.00025 27.6 7.2 35 37-71 3-37 (56)
259 TIGR02338 gimC_beta prefoldin, 81.3 27 0.00058 28.2 10.7 39 104-142 68-106 (110)
260 PF04012 PspA_IM30: PspA/IM30 81.1 40 0.00086 30.0 17.4 44 107-150 95-138 (221)
261 KOG4302 Microtubule-associated 80.9 68 0.0015 34.2 15.5 124 80-223 44-178 (660)
262 PRK00409 recombination and DNA 80.8 69 0.0015 34.6 15.9 43 108-150 518-560 (782)
263 PF01920 Prefoldin_2: Prefoldi 80.6 24 0.00053 27.3 9.8 42 109-150 61-102 (106)
264 PF15294 Leu_zip: Leucine zipp 80.4 55 0.0012 31.2 14.7 44 102-145 131-174 (278)
265 PF04582 Reo_sigmaC: Reovirus 80.1 3.3 7.1E-05 40.2 5.2 52 172-230 107-158 (326)
266 TIGR02231 conserved hypothetic 80.1 20 0.00044 36.3 11.2 44 17-60 58-101 (525)
267 COG4026 Uncharacterized protei 80.0 11 0.00024 35.1 8.4 51 100-150 139-189 (290)
268 PF05010 TACC: Transforming ac 79.9 48 0.001 30.2 23.0 114 31-150 24-137 (207)
269 KOG4438 Centromere-associated 79.7 73 0.0016 32.2 19.3 28 44-71 152-179 (446)
270 PF06005 DUF904: Protein of un 79.6 21 0.00045 27.3 8.5 47 39-88 6-52 (72)
271 PF10234 Cluap1: Clusterin-ass 79.3 27 0.00058 33.1 10.9 54 73-126 199-255 (267)
272 PRK11281 hypothetical protein; 78.9 1.2E+02 0.0026 34.3 22.9 34 31-64 74-107 (1113)
273 PF08826 DMPK_coil: DMPK coile 78.5 17 0.00038 26.9 7.5 42 101-142 16-57 (61)
274 PF15066 CAGE1: Cancer-associa 78.2 86 0.0019 32.2 21.5 140 37-190 331-473 (527)
275 PF05483 SCP-1: Synaptonemal c 78.0 1.1E+02 0.0023 33.1 20.9 29 170-198 622-650 (786)
276 PF14193 DUF4315: Domain of un 77.9 13 0.00027 29.3 7.0 57 118-180 2-58 (83)
277 PRK10132 hypothetical protein; 77.5 37 0.0008 27.8 9.9 22 261-282 87-108 (108)
278 PF00769 ERM: Ezrin/radixin/mo 77.3 61 0.0013 30.0 14.6 100 75-192 5-104 (246)
279 PF07889 DUF1664: Protein of u 77.3 43 0.00094 28.3 11.1 37 101-137 87-123 (126)
280 KOG4603 TBP-1 interacting prot 77.2 55 0.0012 29.4 13.4 100 125-239 87-186 (201)
281 PF04478 Mid2: Mid2 like cell 77.0 1 2.3E-05 39.2 0.8 24 259-282 56-79 (154)
282 PF04912 Dynamitin: Dynamitin 77.0 70 0.0015 31.3 13.6 105 31-139 247-365 (388)
283 COG3074 Uncharacterized protei 76.9 32 0.00068 26.6 8.6 55 170-224 18-72 (79)
284 PF10481 CENP-F_N: Cenp-F N-te 76.7 66 0.0014 30.9 12.6 26 170-195 109-134 (307)
285 TIGR00414 serS seryl-tRNA synt 76.3 21 0.00046 35.4 9.9 30 167-196 80-109 (418)
286 KOG0239 Kinesin (KAR3 subfamil 75.9 91 0.002 33.3 14.8 93 96-199 175-270 (670)
287 PF05454 DAG1: Dystroglycan (D 75.9 0.87 1.9E-05 43.5 0.0 15 268-282 160-174 (290)
288 PF02403 Seryl_tRNA_N: Seryl-t 75.8 28 0.00061 27.5 8.8 29 98-126 69-97 (108)
289 PF08647 BRE1: BRE1 E3 ubiquit 75.5 39 0.00084 26.8 10.4 43 108-150 36-78 (96)
290 PF03148 Tektin: Tektin family 74.5 91 0.002 30.6 20.1 6 17-22 199-204 (384)
291 PRK04325 hypothetical protein; 74.5 21 0.00046 27.2 7.3 38 112-149 11-48 (74)
292 PRK10361 DNA recombination pro 74.4 1.1E+02 0.0023 31.4 20.5 91 135-230 103-197 (475)
293 PF04102 SlyX: SlyX; InterPro 74.3 18 0.0004 27.0 6.9 47 104-150 5-51 (69)
294 PF14389 Lzipper-MIP1: Leucine 73.9 9.5 0.00021 30.0 5.4 34 115-148 52-85 (88)
295 PF11932 DUF3450: Protein of u 73.7 73 0.0016 29.1 12.7 49 102-150 41-89 (251)
296 PF07989 Microtub_assoc: Micro 73.7 30 0.00066 26.5 8.0 62 168-229 5-67 (75)
297 KOG1962 B-cell receptor-associ 73.1 26 0.00056 32.3 8.7 62 122-194 149-210 (216)
298 PF05565 Sipho_Gp157: Siphovir 73.0 61 0.0013 28.0 10.8 43 108-150 45-87 (162)
299 KOG4403 Cell surface glycoprot 72.8 99 0.0021 31.6 13.3 47 17-66 228-274 (575)
300 PF10779 XhlA: Haemolysin XhlA 72.8 15 0.00032 27.5 6.0 43 108-150 4-46 (71)
301 PF15188 CCDC-167: Coiled-coil 72.4 19 0.00041 28.5 6.7 31 122-152 3-33 (85)
302 cd00584 Prefoldin_alpha Prefol 72.3 13 0.00028 30.4 6.1 38 34-71 3-40 (129)
303 PF10458 Val_tRNA-synt_C: Valy 72.2 32 0.00069 25.3 7.7 64 122-189 2-65 (66)
304 PRK02119 hypothetical protein; 71.8 26 0.00056 26.7 7.2 30 115-144 14-43 (73)
305 PF14257 DUF4349: Domain of un 71.3 32 0.0007 31.5 9.2 62 166-227 128-191 (262)
306 PF00769 ERM: Ezrin/radixin/mo 71.3 87 0.0019 29.0 15.8 33 205-238 176-208 (246)
307 PF09738 DUF2051: Double stran 71.1 71 0.0015 30.8 11.6 54 80-133 82-135 (302)
308 PF12795 MscS_porin: Mechanose 71.0 82 0.0018 28.6 21.1 35 31-65 32-66 (240)
309 KOG0249 LAR-interacting protei 70.9 1.6E+02 0.0035 32.0 15.1 40 32-71 93-132 (916)
310 PF05377 FlaC_arch: Flagella a 69.9 16 0.00034 26.7 5.3 33 32-64 2-34 (55)
311 PF14197 Cep57_CLD_2: Centroso 69.7 46 0.00099 25.1 8.2 62 129-196 3-66 (69)
312 KOG2751 Beclin-like protein [S 69.7 79 0.0017 32.1 11.9 27 201-227 242-268 (447)
313 COG1382 GimC Prefoldin, chaper 69.7 66 0.0014 27.0 12.1 30 121-150 74-103 (119)
314 PF10481 CENP-F_N: Cenp-F N-te 69.5 1E+02 0.0023 29.6 12.1 36 117-152 18-53 (307)
315 PF10779 XhlA: Haemolysin XhlA 69.4 25 0.00054 26.3 6.6 44 102-145 5-48 (71)
316 PF07111 HCR: Alpha helical co 69.3 1.7E+02 0.0037 31.6 19.8 132 68-200 190-354 (739)
317 PF04102 SlyX: SlyX; InterPro 69.3 29 0.00063 25.9 7.0 19 176-194 31-49 (69)
318 PF06810 Phage_GP20: Phage min 69.3 44 0.00094 28.9 9.0 15 166-180 54-68 (155)
319 KOG0993 Rab5 GTPase effector R 69.2 1.4E+02 0.003 30.5 15.4 42 159-200 144-185 (542)
320 PF06810 Phage_GP20: Phage min 69.0 28 0.0006 30.1 7.7 13 207-219 118-130 (155)
321 PF10046 BLOC1_2: Biogenesis o 68.6 58 0.0013 25.9 10.5 22 125-146 74-95 (99)
322 PLN02678 seryl-tRNA synthetase 68.2 35 0.00076 34.5 9.3 30 167-196 82-111 (448)
323 PRK02793 phi X174 lysis protei 68.0 37 0.00079 25.7 7.3 41 108-148 13-53 (72)
324 PF12761 End3: Actin cytoskele 67.8 97 0.0021 28.2 11.5 26 31-56 97-122 (195)
325 KOG2991 Splicing regulator [RN 67.8 1.2E+02 0.0025 29.1 17.6 20 108-127 182-201 (330)
326 PRK04325 hypothetical protein; 67.7 32 0.00068 26.2 6.9 47 104-150 10-56 (74)
327 KOG0288 WD40 repeat protein Ti 67.6 1.5E+02 0.0032 30.2 15.1 31 31-61 14-44 (459)
328 PF05278 PEARLI-4: Arabidopsis 67.4 1.2E+02 0.0025 29.0 13.9 30 170-199 214-243 (269)
329 KOG4687 Uncharacterized coiled 67.3 1.2E+02 0.0027 29.3 12.9 88 112-199 32-119 (389)
330 PF01920 Prefoldin_2: Prefoldi 67.3 56 0.0012 25.2 8.8 34 164-197 63-96 (106)
331 TIGR03752 conj_TIGR03752 integ 67.3 60 0.0013 33.2 10.7 49 102-150 58-106 (472)
332 PF06120 Phage_HK97_TLTM: Tail 67.2 1.2E+02 0.0027 29.2 17.1 120 108-234 72-192 (301)
333 TIGR00293 prefoldin, archaeal 67.1 57 0.0012 26.4 8.9 38 34-71 3-40 (126)
334 PF08693 SKG6: Transmembrane a 67.0 3.8 8.1E-05 28.1 1.5 25 257-281 13-39 (40)
335 PF11570 E2R135: Coiled-coil r 66.8 82 0.0018 27.0 9.9 40 83-122 78-117 (136)
336 PF13514 AAA_27: AAA domain 66.4 2.2E+02 0.0048 31.8 25.4 48 103-150 784-834 (1111)
337 TIGR03017 EpsF chain length de 66.3 1.3E+02 0.0029 29.3 18.3 23 35-57 176-198 (444)
338 PF06632 XRCC4: DNA double-str 66.1 1E+02 0.0022 30.3 11.7 74 31-134 138-211 (342)
339 PRK11519 tyrosine kinase; Prov 65.8 1.9E+02 0.0041 30.8 15.1 11 214-224 386-396 (719)
340 PLN02320 seryl-tRNA synthetase 65.7 34 0.00074 35.2 8.7 28 168-195 142-169 (502)
341 PRK02119 hypothetical protein; 65.6 32 0.00069 26.2 6.6 16 125-140 10-25 (73)
342 PTZ00451 dephospho-CoA kinase; 65.6 3 6.5E-05 38.6 1.1 21 259-279 220-240 (244)
343 PF04728 LPP: Lipoprotein leuc 65.5 51 0.0011 24.2 7.3 37 31-67 4-40 (56)
344 PF10392 COG5: Golgi transport 65.5 78 0.0017 26.3 11.8 69 82-150 51-119 (132)
345 PRK00846 hypothetical protein; 65.2 44 0.00096 25.9 7.3 45 106-150 16-60 (77)
346 PF15188 CCDC-167: Coiled-coil 65.1 51 0.0011 26.1 7.8 58 170-231 5-62 (85)
347 PRK04406 hypothetical protein; 64.9 43 0.00093 25.7 7.2 43 108-150 9-51 (75)
348 PF14282 FlxA: FlxA-like prote 64.5 29 0.00063 28.0 6.6 20 131-150 19-38 (106)
349 PF15290 Syntaphilin: Golgi-lo 64.4 34 0.00073 32.8 7.8 14 137-150 67-80 (305)
350 PRK14011 prefoldin subunit alp 64.2 94 0.002 26.7 11.0 41 31-71 4-44 (144)
351 PF14197 Cep57_CLD_2: Centroso 64.0 61 0.0013 24.5 8.0 25 42-66 3-27 (69)
352 smart00502 BBC B-Box C-termina 63.8 68 0.0015 24.9 13.5 28 206-233 73-100 (127)
353 PF05384 DegS: Sensor protein 63.8 1E+02 0.0022 27.0 15.2 114 106-230 9-130 (159)
354 KOG0249 LAR-interacting protei 63.5 2.3E+02 0.0049 30.9 16.3 23 23-47 107-129 (916)
355 PTZ00464 SNF-7-like protein; P 63.5 1.2E+02 0.0026 27.7 17.1 59 31-89 19-82 (211)
356 PRK05431 seryl-tRNA synthetase 63.4 47 0.001 33.1 9.1 31 166-196 76-106 (425)
357 PRK11020 hypothetical protein; 63.3 63 0.0014 27.0 8.3 64 128-200 2-69 (118)
358 PF14282 FlxA: FlxA-like prote 63.2 28 0.0006 28.1 6.3 55 170-224 19-77 (106)
359 PRK00736 hypothetical protein; 63.1 53 0.0011 24.6 7.3 32 117-148 12-43 (68)
360 KOG0972 Huntingtin interacting 62.6 84 0.0018 30.6 10.1 38 80-117 292-329 (384)
361 PF08232 Striatin: Striatin fa 62.4 43 0.00092 28.3 7.5 61 87-147 9-69 (134)
362 PF04849 HAP1_N: HAP1 N-termin 62.4 1.6E+02 0.0034 28.6 19.9 32 168-199 218-249 (306)
363 KOG4001 Axonemal dynein light 61.8 1.4E+02 0.0029 27.8 11.2 66 116-184 184-249 (259)
364 PF05791 Bacillus_HBL: Bacillu 61.6 70 0.0015 28.2 9.0 18 31-48 74-91 (184)
365 TIGR01069 mutS2 MutS2 family p 60.9 2.5E+02 0.0053 30.4 15.0 43 108-150 513-555 (771)
366 PF07989 Microtub_assoc: Micro 60.8 74 0.0016 24.4 8.0 32 119-150 2-33 (75)
367 PF03148 Tektin: Tektin family 60.5 1.8E+02 0.0038 28.6 22.9 75 164-238 259-357 (384)
368 KOG1962 B-cell receptor-associ 60.5 86 0.0019 28.9 9.5 49 102-150 150-198 (216)
369 TIGR03794 NHPM_micro_HlyD NHPM 60.5 1.7E+02 0.0038 28.6 14.0 22 166-187 230-251 (421)
370 PRK10246 exonuclease subunit S 60.1 2.8E+02 0.0062 30.9 25.8 14 205-218 860-873 (1047)
371 PRK11281 hypothetical protein; 60.0 3E+02 0.0066 31.2 21.9 116 32-150 123-246 (1113)
372 PF05103 DivIVA: DivIVA protei 59.4 3.3 7.1E-05 33.7 0.2 50 22-71 17-66 (131)
373 PF08657 DASH_Spc34: DASH comp 59.0 43 0.00093 31.5 7.6 26 36-61 179-204 (259)
374 PF02841 GBP_C: Guanylate-bind 58.9 1.6E+02 0.0035 27.6 13.4 26 165-190 231-256 (297)
375 KOG4603 TBP-1 interacting prot 58.2 1.4E+02 0.0031 26.9 12.8 36 29-64 78-113 (201)
376 PF09755 DUF2046: Uncharacteri 58.2 1.9E+02 0.004 28.2 22.4 39 33-71 23-61 (310)
377 COG2900 SlyX Uncharacterized p 57.9 66 0.0014 24.8 7.0 29 169-197 28-56 (72)
378 PRK10698 phage shock protein P 57.8 1.5E+02 0.0033 27.0 18.1 58 89-146 16-74 (222)
379 PF13747 DUF4164: Domain of un 57.7 92 0.002 24.5 10.0 48 100-147 36-83 (89)
380 PF14073 Cep57_CLD: Centrosome 57.6 1.4E+02 0.0031 26.7 18.3 121 31-151 5-154 (178)
381 PRK00409 recombination and DNA 57.4 1.5E+02 0.0032 32.1 12.2 19 35-53 384-402 (782)
382 KOG0288 WD40 repeat protein Ti 56.8 2.3E+02 0.005 28.8 15.5 63 76-138 7-69 (459)
383 KOG0993 Rab5 GTPase effector R 56.5 1.5E+02 0.0033 30.2 11.1 46 100-145 138-183 (542)
384 KOG1760 Molecular chaperone Pr 56.2 1.2E+02 0.0026 25.9 8.9 33 165-197 83-115 (131)
385 KOG3091 Nuclear pore complex, 55.9 2.4E+02 0.0053 29.2 12.6 45 42-89 353-397 (508)
386 PRK11519 tyrosine kinase; Prov 55.9 2.8E+02 0.006 29.5 17.6 23 71-93 270-292 (719)
387 PF10211 Ax_dynein_light: Axon 55.8 1.5E+02 0.0032 26.3 13.9 38 113-150 123-160 (189)
388 COG0216 PrfA Protein chain rel 55.7 1.9E+02 0.004 28.7 11.4 22 129-150 81-102 (363)
389 TIGR02977 phageshock_pspA phag 55.1 1.6E+02 0.0035 26.5 16.6 59 89-147 16-75 (219)
390 TIGR01069 mutS2 MutS2 family p 54.9 1.8E+02 0.0039 31.4 12.3 18 34-51 378-395 (771)
391 COG3352 FlaC Putative archaeal 54.9 82 0.0018 27.7 7.9 68 168-238 77-145 (157)
392 COG0598 CorA Mg2+ and Co2+ tra 54.2 2E+02 0.0043 27.3 15.6 70 122-197 178-247 (322)
393 PF09403 FadA: Adhesion protei 53.7 1.4E+02 0.003 25.3 13.5 25 202-226 97-121 (126)
394 KOG4687 Uncharacterized coiled 53.7 2.2E+02 0.0048 27.6 19.5 56 31-89 10-65 (389)
395 PF05008 V-SNARE: Vesicle tran 53.6 90 0.0019 23.1 10.0 74 139-222 4-78 (79)
396 KOG0244 Kinesin-like protein [ 53.2 3.6E+02 0.0078 30.0 17.2 68 162-229 501-572 (913)
397 PRK10803 tol-pal system protei 52.8 67 0.0015 29.9 7.8 53 19-71 29-88 (263)
398 PF05278 PEARLI-4: Arabidopsis 52.8 2.1E+02 0.0046 27.2 11.6 66 171-236 194-259 (269)
399 TIGR01010 BexC_CtrB_KpsE polys 52.7 2.2E+02 0.0047 27.3 14.6 25 201-225 281-305 (362)
400 TIGR03752 conj_TIGR03752 integ 52.7 2.2E+02 0.0047 29.3 11.8 34 31-64 60-93 (472)
401 COG3352 FlaC Putative archaeal 52.1 82 0.0018 27.6 7.5 63 31-96 45-107 (157)
402 PF10805 DUF2730: Protein of u 52.0 1.1E+02 0.0025 24.6 8.1 33 116-148 64-96 (106)
403 PF08700 Vps51: Vps51/Vps67; 51.8 99 0.0022 23.1 7.8 34 201-234 54-87 (87)
404 PF12958 DUF3847: Protein of u 51.8 57 0.0012 25.8 6.0 33 119-151 3-35 (86)
405 PRK00295 hypothetical protein; 51.8 69 0.0015 23.9 6.3 13 129-141 10-22 (68)
406 KOG4593 Mitotic checkpoint pro 51.6 3.4E+02 0.0074 29.3 22.9 188 31-239 385-586 (716)
407 PF06698 DUF1192: Protein of u 51.4 44 0.00095 24.7 5.0 27 31-57 22-48 (59)
408 PRK13729 conjugal transfer pil 51.2 56 0.0012 33.4 7.4 6 235-240 131-136 (475)
409 PRK00736 hypothetical protein; 51.1 72 0.0016 23.9 6.3 40 108-147 10-49 (68)
410 COG2900 SlyX Uncharacterized p 51.0 1.1E+02 0.0024 23.5 7.3 47 104-150 9-55 (72)
411 PF05957 DUF883: Bacterial pro 50.9 90 0.0019 24.2 7.1 20 261-280 74-93 (94)
412 KOG2264 Exostosin EXT1L [Signa 50.6 56 0.0012 34.6 7.3 26 38-63 94-119 (907)
413 PRK12704 phosphodiesterase; Pr 50.5 3E+02 0.0066 28.3 17.3 10 75-84 68-77 (520)
414 COG3206 GumC Uncharacterized p 49.9 2.7E+02 0.0059 27.6 18.3 61 182-242 347-410 (458)
415 PF05791 Bacillus_HBL: Bacillu 49.8 76 0.0017 27.9 7.3 29 82-110 110-138 (184)
416 KOG4572 Predicted DNA-binding 49.7 4.1E+02 0.009 29.7 17.8 33 101-133 1000-1032(1424)
417 PF09731 Mitofilin: Mitochondr 49.3 3.1E+02 0.0067 28.1 17.4 7 228-234 414-420 (582)
418 COG1566 EmrA Multidrug resista 49.1 2.7E+02 0.0059 27.4 11.9 49 17-65 78-126 (352)
419 PRK03598 putative efflux pump 48.7 2.1E+02 0.0045 26.9 10.5 11 36-46 87-97 (331)
420 PF08172 CASP_C: CASP C termin 48.5 1.2E+02 0.0026 28.3 8.7 26 35-60 4-29 (248)
421 PRK09343 prefoldin subunit bet 48.3 1.5E+02 0.0034 24.3 12.4 38 108-145 12-49 (121)
422 PF07851 TMPIT: TMPIT-like pro 48.3 1.8E+02 0.004 28.4 10.1 73 108-190 16-88 (330)
423 KOG1937 Uncharacterized conser 48.2 3.3E+02 0.0071 28.1 19.0 17 166-182 498-514 (521)
424 PF00170 bZIP_1: bZIP transcri 48.0 66 0.0014 23.2 5.6 33 32-64 28-60 (64)
425 PF15013 CCSMST1: CCSMST1 fami 47.9 12 0.00027 29.1 1.7 21 261-281 31-52 (77)
426 PF13940 Ldr_toxin: Toxin Ldr, 47.8 16 0.00034 24.2 1.9 23 260-282 13-35 (35)
427 TIGR01612 235kDa-fam reticuloc 47.2 6.7E+02 0.014 31.3 17.8 164 37-222 883-1076(2757)
428 TIGR02894 DNA_bind_RsfA transc 46.9 1E+02 0.0022 27.2 7.4 43 34-76 108-150 (161)
429 PF08172 CASP_C: CASP C termin 46.8 68 0.0015 29.9 6.7 47 33-89 89-135 (248)
430 PHA02955 hypothetical protein; 46.6 10 0.00023 34.7 1.3 25 258-282 176-202 (213)
431 PRK15396 murein lipoprotein; P 46.6 1E+02 0.0023 23.9 6.7 34 31-64 26-59 (78)
432 KOG0982 Centrosomal protein Nu 46.5 3.4E+02 0.0074 27.8 18.4 33 168-200 358-390 (502)
433 KOG2685 Cystoskeletal protein 46.4 3.3E+02 0.0072 27.6 13.6 120 80-231 258-377 (421)
434 PF01544 CorA: CorA-like Mg2+ 46.0 2.2E+02 0.0048 25.4 12.7 31 169-199 191-221 (292)
435 KOG0244 Kinesin-like protein [ 45.8 3E+02 0.0064 30.6 12.0 57 164-220 542-601 (913)
436 PF08700 Vps51: Vps51/Vps67; 45.6 1.3E+02 0.0027 22.5 7.7 47 73-119 35-81 (87)
437 TIGR00414 serS seryl-tRNA synt 45.1 2.4E+02 0.0052 28.1 10.7 26 167-192 73-98 (418)
438 PRK05431 seryl-tRNA synthetase 45.1 1.3E+02 0.0027 30.1 8.7 18 123-140 41-58 (425)
439 TIGR02132 phaR_Bmeg polyhydrox 44.8 2.4E+02 0.0052 25.5 10.4 64 66-143 70-133 (189)
440 KOG4302 Microtubule-associated 44.8 4.3E+02 0.0092 28.4 17.2 13 138-150 160-172 (660)
441 TIGR02209 ftsL_broad cell divi 44.6 1.1E+02 0.0024 22.9 6.6 35 31-65 25-59 (85)
442 smart00338 BRLZ basic region l 44.3 71 0.0015 23.0 5.3 33 32-64 28-60 (65)
443 PF11180 DUF2968: Protein of u 43.8 2.5E+02 0.0055 25.5 11.3 40 203-242 152-191 (192)
444 PF13758 Prefoldin_3: Prefoldi 43.7 53 0.0011 26.8 4.8 13 82-94 33-45 (99)
445 PF01102 Glycophorin_A: Glycop 43.7 13 0.00028 31.2 1.4 13 270-282 80-92 (122)
446 PF12958 DUF3847: Protein of u 43.6 1.6E+02 0.0034 23.4 7.3 34 31-64 2-35 (86)
447 PRK13729 conjugal transfer pil 43.4 73 0.0016 32.7 6.8 42 180-221 79-120 (475)
448 PF09032 Siah-Interact_N: Siah 43.1 95 0.0021 24.2 6.0 44 139-184 4-47 (79)
449 PF06428 Sec2p: GDP/GTP exchan 43.1 89 0.0019 25.3 6.1 33 167-199 55-87 (100)
450 PF15254 CCDC14: Coiled-coil d 42.9 4.9E+02 0.011 28.6 20.1 73 167-239 484-556 (861)
451 COG0497 RecN ATPase involved i 42.7 4.3E+02 0.0092 27.8 18.3 56 179-235 344-400 (557)
452 PF03961 DUF342: Protein of un 42.7 1E+02 0.0022 30.7 7.8 24 127-150 337-360 (451)
453 PF11221 Med21: Subunit 21 of 42.6 2.1E+02 0.0045 24.2 9.0 76 99-188 65-140 (144)
454 PF14610 DUF4448: Protein of u 42.1 15 0.00032 32.3 1.5 23 255-277 156-178 (189)
455 PF06818 Fez1: Fez1; InterPro 41.7 2.8E+02 0.006 25.4 18.6 42 30-71 10-51 (202)
456 PF04799 Fzo_mitofusin: fzo-li 41.7 1E+02 0.0022 27.5 6.7 44 49-92 125-168 (171)
457 PF15456 Uds1: Up-regulated Du 41.7 2.1E+02 0.0045 24.0 11.0 29 31-60 23-51 (124)
458 KOG2264 Exostosin EXT1L [Signa 41.7 1.3E+02 0.0029 31.9 8.4 19 121-139 104-122 (907)
459 PRK10803 tol-pal system protei 41.4 1.2E+02 0.0026 28.2 7.6 52 137-199 39-90 (263)
460 COG3088 CcmH Uncharacterized p 41.4 16 0.00034 31.9 1.6 25 258-282 106-130 (153)
461 TIGR03545 conserved hypothetic 40.8 4.4E+02 0.0096 27.5 12.4 9 223-231 303-311 (555)
462 PF04012 PspA_IM30: PspA/IM30 40.3 2.6E+02 0.0057 24.7 18.6 39 112-150 93-131 (221)
463 PF12252 SidE: Dot/Icm substra 40.1 2.8E+02 0.006 31.7 10.8 51 184-237 1160-1215(1439)
464 PF12191 stn_TNFRSF12A: Tumour 40.1 10 0.00022 32.2 0.2 7 259-265 75-81 (129)
465 PF02050 FliJ: Flagellar FliJ 39.4 1.7E+02 0.0037 22.2 11.4 94 33-145 1-94 (123)
466 PF06785 UPF0242: Uncharacteri 39.4 4E+02 0.0086 26.5 16.2 62 170-231 155-220 (401)
467 PF10359 Fmp27_WPPW: RNA pol I 39.3 92 0.002 31.5 6.9 29 205-233 200-228 (475)
468 PRK12704 phosphodiesterase; Pr 39.0 4.6E+02 0.0099 27.1 16.5 9 235-243 235-243 (520)
469 PRK10476 multidrug resistance 38.9 3.4E+02 0.0074 25.6 12.1 114 31-144 94-207 (346)
470 PRK11578 macrolide transporter 38.7 2.7E+02 0.0059 26.6 9.8 27 35-61 97-123 (370)
471 PRK11578 macrolide transporter 38.4 2E+02 0.0044 27.5 8.8 31 40-70 95-125 (370)
472 PF10234 Cluap1: Clusterin-ass 38.1 3.6E+02 0.0078 25.6 11.4 46 105-150 171-216 (267)
473 PF15272 BBP1_C: Spindle pole 38.1 3.1E+02 0.0068 24.9 17.7 56 164-222 94-149 (196)
474 PF09787 Golgin_A5: Golgin sub 38.0 4.5E+02 0.0098 26.8 20.0 24 201-224 388-411 (511)
475 PF04201 TPD52: Tumour protein 37.9 86 0.0019 27.7 5.6 39 112-150 31-69 (162)
476 PRK09841 cryptic autophosphory 37.8 5.3E+02 0.011 27.5 13.2 25 169-193 369-393 (726)
477 COG2919 Septum formation initi 37.7 1.4E+02 0.003 24.5 6.5 41 31-71 51-91 (117)
478 PF09744 Jnk-SapK_ap_N: JNK_SA 37.7 2.8E+02 0.006 24.2 14.2 31 165-195 84-114 (158)
479 COG1730 GIM5 Predicted prefold 37.6 1.6E+02 0.0035 25.4 7.2 41 29-69 93-133 (145)
480 PF04949 Transcrip_act: Transc 37.6 2.9E+02 0.0062 24.3 16.6 26 96-121 77-102 (159)
481 KOG1760 Molecular chaperone Pr 37.3 2E+02 0.0043 24.6 7.4 43 17-62 13-55 (131)
482 cd00179 SynN Syntaxin N-termin 37.0 2.3E+02 0.0051 23.1 13.2 78 164-241 42-128 (151)
483 PF13094 CENP-Q: CENP-Q, a CEN 36.8 2.6E+02 0.0057 23.7 9.1 39 108-146 46-84 (160)
484 COG4477 EzrA Negative regulato 36.8 5.3E+02 0.011 27.1 22.1 69 82-150 361-429 (570)
485 PF14992 TMCO5: TMCO5 family 36.7 3.9E+02 0.0085 25.6 13.4 24 35-58 23-46 (280)
486 KOG2391 Vacuolar sorting prote 36.6 1E+02 0.0023 30.4 6.4 65 80-144 223-287 (365)
487 PF00509 Hemagglutinin: Haemag 36.4 33 0.00071 35.6 3.1 126 6-164 331-463 (550)
488 cd00890 Prefoldin Prefoldin is 36.4 2.2E+02 0.0047 22.6 8.9 104 40-150 2-127 (129)
489 PF08702 Fib_alpha: Fibrinogen 36.2 2.8E+02 0.006 23.8 13.8 104 35-150 27-130 (146)
490 TIGR03867 MprA_tail MprA prote 36.1 34 0.00073 21.6 2.0 26 255-282 1-26 (27)
491 PF06698 DUF1192: Protein of u 35.8 88 0.0019 23.1 4.5 28 32-59 23-50 (59)
492 PLN02678 seryl-tRNA synthetase 35.8 2.4E+02 0.0052 28.6 9.2 72 124-196 33-104 (448)
493 PF09728 Taxilin: Myosin-like 35.6 4.1E+02 0.0088 25.5 19.2 151 32-186 148-309 (309)
494 PF12709 Kinetocho_Slk19: Cent 35.5 1.2E+02 0.0026 24.2 5.5 38 33-70 45-82 (87)
495 PF03310 Cauli_DNA-bind: Cauli 35.5 1.7E+02 0.0037 24.7 6.7 45 32-76 1-45 (121)
496 PF05276 SH3BP5: SH3 domain-bi 35.2 3.8E+02 0.0081 25.0 23.3 189 30-251 14-239 (239)
497 COG3074 Uncharacterized protei 34.6 2.2E+02 0.0047 22.1 9.6 73 39-149 6-78 (79)
498 KOG2685 Cystoskeletal protein 34.5 5.1E+02 0.011 26.3 15.1 136 73-219 258-393 (421)
499 COG0172 SerS Seryl-tRNA synthe 34.4 3.2E+02 0.0069 27.7 9.7 92 53-150 4-101 (429)
500 TIGR02971 heterocyst_DevB ABC 34.4 3.8E+02 0.0083 24.9 12.9 113 33-148 86-203 (327)
No 1
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=7e-08 Score=89.81 Aligned_cols=140 Identities=22% Similarity=0.299 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH------------------DLV 92 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~------------------dl~ 92 (282)
++..+..++..+..++..++.+|..+..+|..++ ++|..|...|+.|+|.+|. ||+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~------~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~I 133 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK------ENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLI 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHH
Confidence 3334444444444444455555555555555555 6799999999999999998 777
Q ss_pred hhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhH
Q 023459 93 TSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKL 172 (282)
Q Consensus 93 ~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl 172 (282)
+|+++ |...++.....++.+..+-..|+.....+++++..|.....+++. .-..|..++
T Consensus 134 sRvtA----------i~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~-----------~~~~L~~qk 192 (265)
T COG3883 134 SRVTA----------ISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELET-----------QLNSLNSQK 192 (265)
T ss_pred HHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 77777 999999999999999999999999999999999999999999965 668899999
Q ss_pred HHHHHHHHHHHHhHHhHHHhhccch
Q 023459 173 DEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 173 ~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
.+++..+..+......+..+...++
T Consensus 193 ~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 193 AEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988888888877666
No 2
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.83 E-value=3e-07 Score=98.06 Aligned_cols=200 Identities=19% Similarity=0.309 Sum_probs=167.0
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 19 DFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEG 98 (282)
Q Consensus 19 ~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~ 98 (282)
.|..|-...+ .+..+...|-..+.+...+.++++.....+..++...+.++ ..+..+........+++
T Consensus 272 ~W~~V~~~~~--ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teie----------a~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 272 AWAWVNEVER--QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIE----------AKIGELKDEVDAQDEEI 339 (1074)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH----------HHHHHHHHhhhhhhHHH
Confidence 5888888877 88888899999999999999999999999999998777777 88888888888888999
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHH
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDRE 178 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~e 178 (282)
+.++..+..++.++.+.+..+...+..|..++.....++++|.+++...-.. + |+...++..++..+..+
T Consensus 340 ~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~----~------~~~~~e~e~k~~~L~~e 409 (1074)
T KOG0250|consen 340 EEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE----L------GSELEERENKLEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h------hhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998333 4 78889999999999999
Q ss_pred HHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 023459 179 ISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVN 240 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~ 240 (282)
+..++..+..|..++++++..-..-+.+...+++.|.++++.++....-+..|+...-.-|+
T Consensus 410 vek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs 471 (1074)
T KOG0250|consen 410 VEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVS 471 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999988865555555556666666666666666555555554444443
No 3
>PRK11637 AmiB activator; Provisional
Probab=98.61 E-value=2.6e-05 Score=76.65 Aligned_cols=154 Identities=13% Similarity=0.205 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHH--------HHhhhhcccchhHHHHHHHHHHHhhh
Q 023459 45 ENKEMKGTIKKLTIEIEGSEEDKRILE-SVAARAEELEIEVSRLQH--------DLVTSMSEGDELGAEVAELKRVLGEK 115 (282)
Q Consensus 45 Ei~elkekI~~le~eIe~lr~~~~~le-~i~~r~~~L~ee~~~~q~--------dl~~~~s~~~e~reEm~~LkseIee~ 115 (282)
+++.+..+|..++.+|..+..+...++ .|..+...|..+++.++. -|....+ ...+...+.-+.......
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~-~~~~~r~~~~l~~i~~~d 168 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEE-SQRGERILAYFGYLNQAR 168 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCC-hhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333 477777888888888887 2222222 122222222233333446
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
...+..+......|...+..++..+..++..+.+++. -+.+|..+..+.+..+..|+.........+..
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~-----------~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~ 237 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQA-----------QQQKLEQARNERKKTLTGLESSLQKDQQQLSE 237 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777777777777743 56667777777777777777777776666666
Q ss_pred chhhhhhhHHHHHHH
Q 023459 196 CKSEKNSAEKTVKEM 210 (282)
Q Consensus 196 ~k~e~~~~e~~~~~~ 210 (282)
++.....+...+..+
T Consensus 238 l~~~~~~L~~~I~~l 252 (428)
T PRK11637 238 LRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655544444444443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.48 E-value=6.5e-05 Score=80.45 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 204 EKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 204 e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
..++..+...+..++.++..+...
T Consensus 475 ~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.42 E-value=9.2e-05 Score=79.28 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 172 LDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 172 l~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
+.++...+..+...++.+...+..+.......+.++..+...+..+..++..+...+..|.
T Consensus 436 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333222244444555555555555555555555444444
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.25 E-value=0.00039 Score=74.22 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
..+..+...+..++.++..+..-+..+.+
T Consensus 908 ~~~~~l~~~l~~l~~~~~~~~~~~~~l~~ 936 (1179)
T TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEV 936 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.23 E-value=0.00039 Score=76.39 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 97 EGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 97 ~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.+++++..+...+......+..+..+|..++.....+...+..+..++..+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 430 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555566666666666666666666666665555555
No 8
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=0.00034 Score=71.02 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGE 114 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee 114 (282)
|+...+..-.++..++..-+.+...|. .++.+..|.+-|++..++++.|+.-..+....+...+......++.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333344444444444444444 3345566777777999999998887777766666666677777777
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
+..+|+..+.+++.|.+....+.++|..- .+...+ =+.|+.+..++.+.+..+..+.+.|..++-
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~d-------------ve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQ--GISGED-------------VERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666666666532 444443 367778888888888888888888888777
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhh-ccccccccccccccc
Q 023459 195 NCKSEKNSAEKTVKEMDERILLWQKEIEEAEKV--IAGLK-DKTLDGVNGTARDVK 247 (282)
Q Consensus 195 ~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~--~~~~~-~~~~~~~~~~~~~~~ 247 (282)
+.+.+ .+.-.++++....++...++++.-. .++++ ++..++++++++|..
T Consensus 364 ~~~l~---~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k 416 (581)
T KOG0995|consen 364 ELKLE---IEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLK 416 (581)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccch
Confidence 66655 4555566666666666666666554 34555 577788888777764
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.21 E-value=0.0006 Score=72.76 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
..+..+...+......+..+...+..++..+..++.++..++..+.
T Consensus 803 ~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 848 (1179)
T TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.20 E-value=0.0019 Score=59.09 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..++..+.....++..+..++..|..+...+..+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333333333
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.15 E-value=0.00067 Score=71.83 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023459 204 EKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 204 e~~~~~~e~~I~~l~~e~~e~ 224 (282)
+..+...+.+|..+..++.++
T Consensus 376 ~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 376 REAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 12
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.08 E-value=0.00049 Score=74.14 Aligned_cols=201 Identities=15% Similarity=0.256 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++.+|..++......+.++..++.+.++.|..+.....+-. .++..+..+|.....++..+..++.....
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d----------~Ei~~~r~~~~~~~re~~~~~~~~~~~~n 365 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQD----------EEIEEARKDLDDLRREVNDLKEEIREIEN 365 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777888888888888888888887766666 66667777777777666666666666666
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEK-VESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDL 189 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~-~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L 189 (282)
.|.+++..+..+++.|..+++.- ..+...+.+.+.++.-| ..++..++..+..|+.+.+.+
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L------------------~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL------------------KKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555555 44444444444444444 456666667777788888888
Q ss_pred HHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhccccccccccccccccCCCCccccccccc
Q 023459 190 ESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKV------IAGLKDKTLDGVNGTARDVKLNGDGEEEDSRLNW 261 (282)
Q Consensus 190 ~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (282)
...+-..+-+....+..+.++.++|.....+++.+.+. .+| ..+-..+--|.+-.+.---...||.|+-|
T Consensus 428 ~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG--~~m~~lL~~I~r~~~~f~~~P~GPlG~~V 503 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG--PNMPQLLRAIERRKRRFQTPPKGPLGKYV 503 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc--hhhHHHHHHHHHHHhcCCCCCCCCcccee
Confidence 77777766665556677777777777777777777653 233 33334444444433211133455666543
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.07 E-value=0.0016 Score=71.68 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFK 183 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk 183 (282)
....++..+......+..+...+..++..+..++..+..+..++..+ .+....+..++..++..+..++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 445 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL-----------KEELKELEAELEELQTELEELN 445 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhHHHHH
Confidence 44445555555555555555555555555555555555555555555 2233344444444444444444
Q ss_pred HhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 184 KKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 184 ~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
..+..|...+..+.+.-.+.++.+......+..+..+++.+.
T Consensus 446 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (1163)
T COG1196 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLE 487 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333344444444444444443333
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=0.0021 Score=71.51 Aligned_cols=196 Identities=12% Similarity=0.223 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhhcccch
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRIL----------ESVAARAEELEIEVSRLQHDLVTSMSEGDE 100 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~l----------e~i~~r~~~L~ee~~~~q~dl~~~~s~~~e 100 (282)
.+..+..++..++.++..+..++..+...+..+..++..+ .++...-..|+.++..+..++....+.
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--- 821 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--- 821 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---
Confidence 4566777777777777777777777777776666666555 555677777777777777666644331
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREIS 180 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~ 180 (282)
..+..+...+......+..+...+..+......++..|..|+.++..+..... ..+.....+.++..+++++..++.
T Consensus 822 --~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~kl-kl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 822 --RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL-QIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444555555555555555555555555555555555555444444422111 111234566777777777777777
Q ss_pred HHHHhHHhHHHhhccchhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 181 GFKKKVDDLESELGNCKSEK-----------NSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 181 ~Lk~~~e~L~~~l~~~k~e~-----------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
++...+..+..++..+..+- ...+.....++..+..++..++.+..+...++
T Consensus 899 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665442 33334445555555555555554444443333
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=98.00 E-value=0.0015 Score=69.26 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREV 126 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeI 126 (282)
..+..++..+...+..+...++.+..++
T Consensus 275 ~~l~~~i~~~~~~~~~le~e~~~l~~~l 302 (880)
T PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEA 302 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444433
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.00 E-value=0.0037 Score=62.64 Aligned_cols=97 Identities=16% Similarity=0.372 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK--------RILESVAARAEELEIEVSRLQHDLVTSMSEGDELG 102 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~--------~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~r 102 (282)
++..++.++..+..++..+..++..+...+..++... ..++.+......|+.++..++..+.+-.+..+.+.
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~ 254 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3445555555555555555555555544444443321 22333455666667777777777776666666656
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHh
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe 127 (282)
+.+..+...+...+..+..+++.+.
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555555544
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.98 E-value=0.0029 Score=64.56 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
+..-|..++..+..+..++......++.+...++.....|+ .++...+.....-...++++......+..
T Consensus 137 ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~----------~eL~~~~ee~e~L~~~~kel~~~~e~l~~ 206 (546)
T PF07888_consen 137 KAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE----------AELEQEEEEMEQLKQQQKELTESSEELKE 206 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666655553333333 33333333222222223333333333444
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
+.+.+.....+....|..|+..+..+..+..+.+
T Consensus 207 E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 207 ERESLKEQLAEARQRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333
No 18
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.94 E-value=0.0051 Score=58.42 Aligned_cols=184 Identities=24% Similarity=0.343 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh-
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG- 113 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe- 113 (282)
|..++..+-+++..+..+++.+...+.++++....+- +++..+-..-.+-.+..+++...+..+....+
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdein----------eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~ 101 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEIN----------EEVQELKEKRDEINAKLQELRKEYRELKEKRNE 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444444444443333332 44444444333333333334444444444444
Q ss_pred --hhhhhHHHHHHHHhhhHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHH
Q 023459 114 --EKGVKLEELEREVDGLKKEKV----------ESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISG 181 (282)
Q Consensus 114 --e~e~eIeelEkeIe~LE~e~~----------~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~ 181 (282)
-....+..++..|..|+.... .+-.+|..|+..+..... +.+-+. --.++..+++.+...-.+
T Consensus 102 ~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k--~~e~~~---~~~el~aei~~lk~~~~e 176 (294)
T COG1340 102 FNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK--ALEENE---KLKELKAEIDELKKKARE 176 (294)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334445555666666654443 233455555555554431 111110 112223333333333333
Q ss_pred HHHhHHhHHHhhccchhhh---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 182 FKKKVDDLESELGNCKSEK---------------------NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e~---------------------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
+.+++..|..+.+.+.... -+....+.+....+..++++++++.+.|++|..
T Consensus 177 ~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 177 IHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333321 556678888888999999999999999998876
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.94 E-value=0.0016 Score=59.50 Aligned_cols=105 Identities=24% Similarity=0.362 Sum_probs=44.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKV 186 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~ 186 (282)
.....++.....+..++.++...+.+...++.++..|+..|..+ |..=..|...-.........+..++
T Consensus 110 e~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~-----------~~~lk~lE~~~~~~~~re~~~e~~i 178 (237)
T PF00261_consen 110 EAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV-----------GNNLKSLEASEEKASEREDEYEEKI 178 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH-----------HHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444 2222233333333333344444555
Q ss_pred HhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023459 187 DDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIE 222 (282)
Q Consensus 187 e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~ 222 (282)
..|...+.+....-...++.+..++..|..+..++.
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544433333333444444444444444433
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=97.90 E-value=0.0089 Score=63.19 Aligned_cols=30 Identities=37% Similarity=0.472 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 203 AEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 203 ~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
.+.++..+...+.+++..+.++.+.+..|.
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555444443
No 21
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.0083 Score=59.09 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
++..+..+|..++.++..+..++..+..+|..+..
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~ 82 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEE 82 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555555555555555543
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.86 E-value=0.0026 Score=63.75 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..++.++..+..+...+..++..++.+|..+.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444443
No 23
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.84 E-value=0.004 Score=57.62 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
++.+...+..++.....+..+...|...+.
T Consensus 144 ~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 144 EARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555555555555555555544
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.73 E-value=0.0064 Score=69.71 Aligned_cols=181 Identities=25% Similarity=0.386 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHH
Q 023459 41 SLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLE 120 (282)
Q Consensus 41 ~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIe 120 (282)
.++.+...+..+|+.++.+|..++.....|- +-..+|++.++.++.++.........+......+...++.++...+
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~---kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENISKLS---KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443222222 2223366777777777777777666666666666666666666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH--H-HHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNVGLLEVR--E-MEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~--~-~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
.-.+....+++.+.+++-.+..+...+.++..+ + .....++-----.|..++++....+.++...+..|...+.++.
T Consensus 1031 ~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1031 REKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444444433110 0 0011111112233444455555555555555555555555544
Q ss_pred hhh-------hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 198 SEK-------NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 198 ~e~-------~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
... ...++....+...+.+++.++.+.
T Consensus 1111 e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1111 EELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 344455555566666666655555
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.01 Score=68.06 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 81 EIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 81 ~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+.+++.+..++......+..+..+-..+...+......+...+....++.+.+..++..+.+++..+
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333323333333333333333333333333333333333333333333333333
No 26
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.67 E-value=0.0087 Score=61.28 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHH----------HHHHHHHHHHHHHHhhHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKE----------KVESEKKVRELERNVGLLE 151 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e----------~~~~ek~i~~LE~kl~ele 151 (282)
+++..++..|..-..++..+...+..+...+.........+..++..+... ...+++++..++..+..+
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~- 367 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI- 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH-
Confidence 777888888888888888888888888888888888888888888888877 777777777777777765
Q ss_pred HHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHH
Q 023459 152 VREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILL 216 (282)
Q Consensus 152 ~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~ 216 (282)
.+.-+..-..=..+...+.++...+..+++....+...+..+...+.++...+..+...+..
T Consensus 368 ---~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 368 ---TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred ---HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21122222234556666666666666666666666666665555444444444444444433
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.0074 Score=65.82 Aligned_cols=157 Identities=26% Similarity=0.401 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc---hhHHHHHHHHHHHhhh-----h-hhHHHHHHHHhhh--------HHHHHH
Q 023459 73 VAARAEELEIEVSRLQHDLVTSMSEGD---ELGAEVAELKRVLGEK-----G-VKLEELEREVDGL--------KKEKVE 135 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~dl~~~~s~~~---e~reEm~~LkseIee~-----e-~eIeelEkeIe~L--------E~e~~~ 135 (282)
.+.+-+.|+.++..+...+.-...... +....+..++.++++. + ..|+.+...|..+ +.++..
T Consensus 832 ~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~ 911 (1293)
T KOG0996|consen 832 LAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEK 911 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHH
Confidence 344555555555555554333333211 1222233444444444 1 3333333333332 233444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-------hhhHHHHH
Q 023459 136 SEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-------NSAEKTVK 208 (282)
Q Consensus 136 ~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-------~~~e~~~~ 208 (282)
+..+|..|+..+..+.+ --.+-++.-......+.++++.+..+..+.+.|...+..+.... .++..-+.
T Consensus 912 ~~~~~~~l~~~i~k~~~----~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~ 987 (1293)
T KOG0996|consen 912 INEQLDKLEADIAKLTV----AIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLK 987 (1293)
T ss_pred HHHHHHHHHHHHHHhHH----HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555532 11223566667777777777777777777777777776655543 56666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 209 EMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 209 ~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
++..++.+++..+..+.+.+..|+-
T Consensus 988 E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 988 EIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888777776
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.015 Score=64.93 Aligned_cols=99 Identities=16% Similarity=0.312 Sum_probs=52.3
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHH--HHHHHHHHHhHHhH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEK--DREISGFKKKVDDL 189 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~ek--e~ei~~Lk~~~e~L 189 (282)
+......+..+...+..++.++..+...|..+.+.+..+.. .+..+...+.-+ ..++.+++.++..|
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~-----------~kr~l~dnL~~~~~~~~l~el~~eI~~l 1040 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKI-----------QERWLQDNLTLRKRENELKEVEEELKQH 1040 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566666666666666666666665532 344444444444 44555555555555
Q ss_pred HHhhccc-------------------hhhhhhhHHHHHHHHHHHHHHHHHH
Q 023459 190 ESELGNC-------------------KSEKNSAEKTVKEMDERILLWQKEI 221 (282)
Q Consensus 190 ~~~l~~~-------------------k~e~~~~e~~~~~~e~~I~~l~~e~ 221 (282)
..++.++ ......+...+..++..|..++.++
T Consensus 1041 ~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1041 LKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443 1111344456666666666666666
No 29
>PRK01156 chromosome segregation protein; Provisional
Probab=97.63 E-value=0.033 Score=59.41 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
.++..+...|..+..++.++.+.+..|+
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.62 E-value=0.019 Score=58.87 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 71 ESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 71 e~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..+-..|..+...+...+......|..+..++..+...++.......++...|..|........+++..+..++..+
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666777778888888889999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 151 EVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 151 e~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
.. .=+++---|+-+....-.......|..|...++.....+.....+-......+..+..+..++..-..-++.+|.-
T Consensus 431 kr--~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 431 KR--YLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HH--HHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 3244444667788888899988888888888877555555555444677777888888888888877777777766
No 31
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.60 E-value=0.033 Score=50.17 Aligned_cols=178 Identities=21% Similarity=0.299 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK----RILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVA 106 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~----~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~ 106 (282)
.+..|+++|..++.+......++.....++..+.... ..+.+|.-|+-.++++...+...+-+...-.+.+.-.+.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776666666666665444322 345667789999999998888888888888888888888
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKV 186 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~ 186 (282)
.+...+.-++..++..+...+.-+..+..++..++.+-+.+.-+.+ ..+.+..+.+..+.+|..+-.+.
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~-----------~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSA-----------KEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-----------HHHHHhhhHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888855 44566666666666666665533
Q ss_pred HhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 187 DDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 187 e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
. +.+.+..+.+++++-|..+..+++.-....++
T Consensus 154 k--------------EaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 154 K--------------EAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred h--------------hhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 2 34444445555555555555555444333333
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=97.56 E-value=0.044 Score=58.03 Aligned_cols=25 Identities=16% Similarity=0.501 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 169 REKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
...+..++..+..++..+..+...+
T Consensus 306 ~~~~~~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 306 LDELREIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.48 E-value=0.02 Score=48.90 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+...|..|+.+....+..+.....++...
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.06 Score=57.48 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
..+..++..++.++..+..+++.+...+..
T Consensus 472 ~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 472 NHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444444443
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.45 E-value=0.0087 Score=55.43 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=13.4
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+.......+.++..+..++.++..+..++...+.++
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.44 E-value=0.026 Score=57.75 Aligned_cols=175 Identities=25% Similarity=0.345 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++....++...|......++.+...+..+++.+........ ++...+....-+.....+.+..+...|..
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~----------ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE----------EEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554443333 22222222222222334445555555666
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
...+....|.+++.+|..+..+..+.++.+..+.....+++. .+.++..++.+.-..+.........+.
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq-----------~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQ-----------LEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 666666666666666666655555555444444333222222 111111111111111111111111122
Q ss_pred HhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 191 SELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 191 ~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
.+...++..-+..+..+..++....-|..+++.+..
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~ 318 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVN 318 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222255566677777777777777766644
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.37 E-value=0.021 Score=48.82 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
+...|.-++.+++..+.....+..+++....+.+.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333333444444444444433333333
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.36 E-value=0.089 Score=47.22 Aligned_cols=169 Identities=20% Similarity=0.316 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHH
Q 023459 44 LENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELE 123 (282)
Q Consensus 44 ~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelE 123 (282)
.+|..+.+.+..+..+++.++-+.+.|..+-.|-+---.....-+.+|...... ..+++..++..+-........++
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~---h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQR---HNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666655555332222222222333322222 23355556666666666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh---
Q 023459 124 REVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK--- 200 (282)
Q Consensus 124 keIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~--- 200 (282)
..+......+-.+...+..|..-... |.....++|..+++.....+..-...+..|..++.-..+..
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~d----------knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSED----------KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66666666666666666655543321 11233566666666666666666666666665554332221
Q ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 --------NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 201 --------~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
.++...+..+...|..|...+.+-.
T Consensus 159 l~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 159 LASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666666655544
No 39
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.34 E-value=0.026 Score=47.28 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEK 115 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~ 115 (282)
..++..++.++..+...+......+..++.|..... ..+...+..+..-+..|...-..+..++..+...
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~----------~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~ 71 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQA----------KIAQEAQQKYERELVKHAEDIKELQQLREELQEL 71 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888887777777 6666677766666666777677777777776666
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
...+..+............ ..+..... -+..|..++.+.+..+.+|..+..-|+.++..
T Consensus 72 ~~~~~~l~~~~~~a~~~l~-------~~e~sw~~--------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELE-------ESEASWEE--------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6555555554444444433 32222222 24556667777778888888888888877754
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.33 E-value=0.1 Score=55.73 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe 113 (282)
+-..++..+..++..+...-..+..+|+.++.+..+.+ .+++.|..++.++...+-.+.+-.+.....+..+..+..
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke---~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKE---QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666677778888876665555 788888888888877666666666666555555555555
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 114 EKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 114 e~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
....+|..+...++..+.++..+..+|..|+..+
T Consensus 375 ~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 375 RLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554444444
No 41
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.063 Score=58.04 Aligned_cols=163 Identities=20% Similarity=0.318 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILES----VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~----i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
+.......+.++..+..+|..++..+.-++.++..+.. |-...--|+-.+..+|..+..-....+.+-..+..+.+
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33344445556666666777777777777766666552 22224445556666776555554455556677888888
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHH----HHHHhHHHHHHHHHHHHHhH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEE----EMREKLDEKDREISGFKKKV 186 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~ke----elrekl~eke~ei~~Lk~~~ 186 (282)
.|.+.+.++.++.-.-..+-.+...+..+|..|+++...|=.|-- +--.+.+++ =++.++..+..-|...+...
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg--r~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e 413 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG--RYSQFSSKEERDKWIRSEIEKLKRGINDTKEQE 413 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc--cccccCcHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 888888888888888888888888888888888887777732111 000011111 24556666666666666555
Q ss_pred HhHHHhhccchhh
Q 023459 187 DDLESELGNCKSE 199 (282)
Q Consensus 187 e~L~~~l~~~k~e 199 (282)
..|..++.++.++
T Consensus 414 ~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 414 NILQKEIEDLESE 426 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.068 Score=58.68 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIE-GSEEDKRILE----SVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVA 106 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe-~lr~~~~~le----~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~ 106 (282)
+.....+++....++..+...+......+. ...+.+...+ .|..|+.+++.........+.+-....-..++.+.
T Consensus 329 ~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK 408 (1293)
T KOG0996|consen 329 LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK 408 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555 2222222222 25667777776666666655555555445555555
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+.+.+..++..+++....+..+++--......|..++..+..|
T Consensus 409 ~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L 452 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQL 452 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHH
Confidence 55555555555555555555554444444444444444443333
No 43
>PRK09039 hypothetical protein; Validated
Probab=97.22 E-value=0.052 Score=52.52 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++...+..+...+...+....+...++..|...|..+..++..|+..|...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444
No 44
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.21 E-value=0.051 Score=58.76 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhcccchhHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH-----DLVTSMSEGDELGAEV 105 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~-----dl~~~~s~~~e~reEm 105 (282)
.+..|.+....|+.........+..++.+|+.+..++..+- .|... ...++-+.. .+-....+|..++..+
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r---er~~~-~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~ 257 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR---ERERK-KSKIELLEKKKKWVEYKKHDREYNAYKQAK 257 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHhccccchHhhhHHHHHHHHHH
Confidence 67888889999999999999999999999999998874443 33322 234444321 4555555666666666
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..++..+..+...+..++..+..|+..+.++..+++....-+.+-
T Consensus 258 ~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 258 DRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666665555444433
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.079 Score=57.45 Aligned_cols=213 Identities=25% Similarity=0.284 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILES-VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELK 109 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~-i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lk 109 (282)
.+..+...+.+++++|.+....++.+..+|.-+..+.+-... =..|-.+|+.++..+-+.+..... ++..-.
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~-------~~ek~~ 814 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSK-------ELEKRE 814 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 466778888888888888888888888888666644333320 112223333333333333333222 333333
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHH-------HHHHHHHH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDE-------KDREISGF 182 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~e-------ke~ei~~L 182 (282)
..++.+.-+.+++++++..++.....++.+++.|...++.++.+=- +--++-.....++.. .+.+|..+
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~----~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD----KVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 3333333334444444444444444444444444444444422100 001122222223333 33333333
Q ss_pred HHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccCCCCcc
Q 023459 183 KKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLK-DKTLDGVNGTARDVKLNGDGEE 254 (282)
Q Consensus 183 k~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 254 (282)
-...+.+.++....+.+-..++-++..++++-...+.+++.+.+-..-|. ++..=+-.|...|..+...|.-
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~a 963 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEA 963 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHH
Confidence 33333333444433333366666777777777777777776666443333 2222233344444433444443
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.17 E-value=0.2 Score=46.87 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 023459 78 EELEIEVSRLQH 89 (282)
Q Consensus 78 ~~L~ee~~~~q~ 89 (282)
..|+.++..++.
T Consensus 120 ~~le~~i~~L~e 131 (312)
T PF00038_consen 120 VDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334444444443
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.13 E-value=0.15 Score=52.02 Aligned_cols=140 Identities=21% Similarity=0.306 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH---H-Hh
Q 023459 83 EVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREM---E-EK 158 (282)
Q Consensus 83 e~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~---~-~~ 158 (282)
.+.++..+|.+.....+.+.+++..|...++.+..++.....++..+........-.+..|+.++..... ++ . .-
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~-eLea~~~~e 360 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS-ELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH-HHHHHHhhh
Confidence 3444444555555555555555555555555555555555555555555555555555555554443311 00 0 00
Q ss_pred hhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023459 159 SKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEE 223 (282)
Q Consensus 159 ~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e 223 (282)
++....-..|-..+.++..+....+......+.++..++.+-.++...+..++..+.....++..
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111223344444444444444444444444444433333344445555555555555554433
No 48
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.11 E-value=0.16 Score=48.39 Aligned_cols=53 Identities=34% Similarity=0.413 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKV 134 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~ 134 (282)
..++.+.....+-.+..+++.+++..++...+.....+.++-..+.++.....
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555544444444455555555555555555555555555555555555444
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.10 E-value=0.32 Score=48.40 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhhhhhchHHHHHHhHHHHHHHHHHHHHhH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREME---EKSKRVRVEEEMREKLDEKDREISGFKKKV 186 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~---~~~~~gg~keelrekl~eke~ei~~Lk~~~ 186 (282)
..+.+++..+..+...-..=...+..+..+|..++..+......-.. ...--......|...+.+.+..+..++.+.
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~ 333 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARV 333 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333456666666777776666554110000 000001234556666777777777777666
Q ss_pred HhHHHhhccchhhh----------hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 187 DDLESELGNCKSEK----------NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 187 e~L~~~l~~~k~e~----------~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
..|...+..++.+- ..+++++...+.....+..++.++
T Consensus 334 ~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 334 AELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555442 445555555555555555554443
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.01 E-value=0.22 Score=53.71 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHH
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKR------------ILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAE 104 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~------------~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reE 104 (282)
.+-++|+.++..+++++++++-.++-++.+.. .+..|...+.-|++-+-++..-..+..-.++.+..+
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ke 404 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKE 404 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55566777777777777777776666664432 234466777777777777776444444444454455
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVE 135 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~ 135 (282)
|...+++++++....+.+...++..|..+..
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iad 435 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSRELDQAESTIAD 435 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444444444443333
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.06 Score=57.06 Aligned_cols=140 Identities=18% Similarity=0.290 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
+-.++.+...|+.++.++..++..+...|.+.+-++. +...+.+.++...+-..++
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t------------------------t~kt~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT------------------------TQKTEIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc------------------------hHHHHHHHhhhHHHHHHHH
Confidence 3344555555555555555555555555555443332 2233333333334444555
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERN-------VGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~k-------l~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
|+++...|.++..-+-.|-.+...+.++++.-..- +..|+. -+-+|--+...++++++++.+++..-.+
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~a----a~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEA----ARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666554332 333321 1223333677778888888887777667
Q ss_pred hHHhHHHhhccchhh
Q 023459 185 KVDDLESELGNCKSE 199 (282)
Q Consensus 185 ~~e~L~~~l~~~k~e 199 (282)
+++.+..++.+++..
T Consensus 564 eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKED 578 (1118)
T ss_pred hhhhHHHHHHHHHHH
Confidence 777776666666554
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.99 E-value=0.34 Score=55.18 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
.+-..++.++...+.+++.++..+...+..+...
T Consensus 445 enF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 445 EEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666555553
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.97 E-value=0.24 Score=52.30 Aligned_cols=103 Identities=18% Similarity=0.335 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 023459 30 NKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELK 109 (282)
Q Consensus 30 ~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lk 109 (282)
+.+.+|+.++..|.+++...+.-=.++...|..+......+. .++..++.+ .+.+...+..|.
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk----------~eL~qlr~e-------ne~Lq~Kl~~L~ 480 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLK----------SELSQLRQE-------NEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHH----------HHHHHHHHH-------HHHHHHHHHHHH
Confidence 356778888888888888777777777777766665443333 444444442 223344455566
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
.....++..+..+|+.+.........+|+++.++...-..
T Consensus 481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 481 QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6666666666666666666666666666666666544333
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.94 E-value=0.18 Score=51.74 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+.++..|.+++....++++.|+++=-.|..|...|.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665544444443333
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.90 E-value=0.27 Score=52.59 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRIL-ESVAARAEELEIEVSRLQ 88 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~l-e~i~~r~~~L~ee~~~~q 88 (282)
.+..+..+.+.+..++..+.+.++..+.+|..+......| +.+..++..|.....++.
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555444333333 234455555554444444
No 56
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.89 E-value=0.33 Score=51.03 Aligned_cols=108 Identities=9% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
++..+..+...+.++...-..-...+..++.++.++++.+... . .+.-..+..+..........|+.++.
T Consensus 293 L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e----~------~~~~~~~~~~~~~a~~~~~~L~~~l~ 362 (754)
T TIGR01005 293 LRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE----L------QKITKSLLMQADAAQARESQLVSDVN 362 (754)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH----H------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333445566666666666665544 2 22333344444554555555555556
Q ss_pred hHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 188 DLESELGNCKSEK---NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 188 ~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
.++..+..+-... ..+++++...+.....+..++.++.
T Consensus 363 ~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 363 QLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443333 6777777777777777777777664
No 57
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.85 E-value=0.4 Score=46.89 Aligned_cols=111 Identities=8% Similarity=0.159 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
+..++..+...+..+.++......-...+..++.++..++..+... + .+....+.............|..
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e----~------~~~~~~~~~~~~~~~~~~~~l~~ 325 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAE----I------KKVTSSVGTNSRILKQREAELRE 325 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH----H------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444445556666666666666666544 2 22222233333334444444555
Q ss_pred hHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 185 KVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 185 ~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
.++.++..+..+.... ..+++++...+.....+..+..++.
T Consensus 326 ~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 326 ALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444433332 5566666666666666666666654
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.82 E-value=0.2 Score=42.96 Aligned_cols=53 Identities=32% Similarity=0.414 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
..+.++..++..++.....+..+..++..|..++..+.+.+.....++.+|+.
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666666666666666666643
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.82 E-value=0.43 Score=44.57 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 023459 71 ESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 71 e~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe 113 (282)
..+..-.+.|.-++..+..++.+....++........+...+.
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~ 106 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELE 106 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555544444433333333333333333333
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.82 E-value=0.49 Score=51.18 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
.+..|..++..|..++++=+.++..++.--..++.-...=-+|-..-++|..++.+..+..-+....-+....+|+.+-.
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677776777667777666665444443333334577778888899988888888887788888889999988
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchH-HHHHHhHHHHHHHHHHHHHhHHhH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVE-EEMREKLDEKDREISGFKKKVDDL 189 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~k-eelrekl~eke~ei~~Lk~~~e~L 189 (282)
-|+...=.-+=.+...+.|..+...+..++.+|+..+.-|.. ||+++ ||+- -.---+..+++..+..|+..+=.|
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKa-Emeek---G~~~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKA-EMEEK---GSDGQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---CCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777777888888888888888888887776622 34333 5543 222223444444444444333333
Q ss_pred HH--------------hhccchhh-------hhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcc
Q 023459 190 ES--------------ELGNCKSE-------KNSAEKTVKEMDERILLWQKEIEEA---EKVIAGLKDK 234 (282)
Q Consensus 190 ~~--------------~l~~~k~e-------~~~~e~~~~~~e~~I~~l~~e~~e~---~~~~~~~~~~ 234 (282)
++ ++..++++ +..+.+++..+++.|.+|+.+++-. +-|+--|-++
T Consensus 388 RDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 388 RDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK 456 (1243)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 22 22222222 2444566777777777777776642 4455444443
No 61
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.79 E-value=0.12 Score=49.58 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
.+..|.+++-.|+.++..++.+...+..+...+. +.-..+ +.+.+....+++..|..|..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E-----------------ekEqqL---v~dcv~QL~~An~qia~Lse 220 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYE-----------------EKEQQL---VLDCVKQLSEANQQIASLSE 220 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-----------------HHHHHH---HHHHHHHhhhcchhHHHHHH
Confidence 5788999999999999999999999998888777 333333 34445555667777777777
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
++.....+......+|..|-..+..+ +.++..+ +-..++|...+.. .+.....|.
T Consensus 221 ELa~k~Ee~~rQQEEIt~Llsqivdl-------Q~r~k~~-----------~~EnEeL~q~L~~-------ske~Q~~L~ 275 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDL-------QQRCKQL-----------AAENEELQQHLQA-------SKESQRQLQ 275 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----------hhhHHHHHHHHHH-------HHHHHHHHH
Confidence 77777777666666666665555544 4444444 1122333333333 455555566
Q ss_pred HhhccchhhhhhhHHHHHHHHHHHHHHH
Q 023459 191 SELGNCKSEKNSAEKTVKEMDERILLWQ 218 (282)
Q Consensus 191 ~~l~~~k~e~~~~e~~~~~~e~~I~~l~ 218 (282)
.++.++++...++-.-..+.+..++.++
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666665444444455544444444
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.79 E-value=0.39 Score=53.48 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe 113 (282)
.|..++..++..+.........++..+..+... -..+...+...+..+.........++.+...++..+.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKK----------IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333322 2223344444444444444444555555555555554
Q ss_pred hh-hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHH
Q 023459 114 EK-GVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE-VREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLES 191 (282)
Q Consensus 114 e~-e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele-~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~ 191 (282)
.. ......++..+..++..++.+...+..+...+...- ...++-+....-....+..+++.+..++...+.....-..
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~ 753 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLK 753 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333455666666666666666665555555443321 1112223333444455555555555555555444444333
Q ss_pred hhccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 192 ELGNCKSEK----NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 192 ~l~~~k~e~----~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
.+..-.+.+ .-=...+..+...|..+..++..++
T Consensus 754 ~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 754 ELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221111 0001344555555555555544443
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.76 E-value=0.6 Score=46.63 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.7
Q ss_pred hhhcccccccccc
Q 023459 230 GLKDKTLDGVNGT 242 (282)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (282)
.++-+..-||+|-
T Consensus 294 ~~~G~l~~PV~G~ 306 (420)
T COG4942 294 ALRGQLAWPVTGR 306 (420)
T ss_pred cccCCcCCCCCCc
Confidence 3444555566553
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.76 E-value=0.47 Score=48.76 Aligned_cols=143 Identities=17% Similarity=0.302 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHH----------HHHHHHHHHHHHH
Q 023459 75 ARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKK----------EKVESEKKVRELE 144 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~----------e~~~~ek~i~~LE 144 (282)
..-..+.+++..++..|..-+.+.+.+...+..+...+......-..+..+++.+.. ....+++++..++
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~ 357 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELE 357 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 334444588888888888888888888888888888888888888888888876653 3455666666666
Q ss_pred HHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 023459 145 RNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEI 221 (282)
Q Consensus 145 ~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~ 221 (282)
.....+.. .=+.....=-.+...+.+....+..+.+....+...+..+...+..+...+..++..|...+..+
T Consensus 358 ~~~~~~~~----~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 358 KRYEDLEE----RIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHH----HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666621 11222345567888888888889999999999988888887777777777777776666665553
No 65
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.28 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 206 TVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 206 ~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
+...++.+|..+..++.++.+....+++
T Consensus 869 el~~l~~~i~~~~a~~~~~~~~lE~~~~ 896 (1200)
T KOG0964|consen 869 ELKTLQDSIDKKKAEIKEIKKELEKAKN 896 (1200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 66
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.15 Score=47.94 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH-----------
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELG----------- 102 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~r----------- 102 (282)
.+..+|..|..++..+..++.+++.+|+.+..+.+.++ .-=..|++++..-+.-|-.|..+.+.-.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~---~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~ 125 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ---KEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILN 125 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHc
Confidence 34455555555555555555566666666665555555 3333444444444444444443322110
Q ss_pred -HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHH
Q 023459 103 -AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISG 181 (282)
Q Consensus 103 -eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~ 181 (282)
.....|-+++..+...+.--.+-|+..+.+...++.+-..++.++..+ ..+..++..++..++.+..+
T Consensus 126 SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l-----------~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 126 SKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETL-----------VALQNELETQLNSLNSQKAE 194 (265)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 123455666777777777777778888888888888888888888888 33666777777776666666
Q ss_pred HHHhHHhHHHhhccchhhh
Q 023459 182 FKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e~ 200 (282)
++.-+-.+.........+.
T Consensus 195 ~~~l~~~~aa~~a~~~~e~ 213 (265)
T COG3883 195 KNALIAALAAKEASALGEK 213 (265)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 6666666666666555553
No 67
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.69 E-value=0.47 Score=43.17 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 023459 29 NNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE-SVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAE 107 (282)
Q Consensus 29 ~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le-~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~ 107 (282)
|.-+..+..++...+.++..+..++..+.........=...++ .|+..-++.+.........+..-..+.+.+.+.+..
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555555444444444444444444443322221111111 122222222222222223344444445555555666
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
+..-+..+=..-+....-|.++......+.+.+.+...++...+.+= .-+|.-..+++..-..+|..++....
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry-------~aLK~hAeekL~~ANeei~~v~~~~~ 160 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY-------QALKAHAEEKLEKANEEIAQVRSKHQ 160 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66655555555555555555555555555555555555555443210 12456666777777777777776554
Q ss_pred hHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 188 DLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 188 ~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
.=..-+ +..-+..+-++.+++.+|.++.++..++-++..-|=
T Consensus 161 ~e~~aL---qa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 161 AELLAL---QASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432222 222244567788999999999999999988776553
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.68 E-value=0.39 Score=50.14 Aligned_cols=108 Identities=24% Similarity=0.337 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hcccc-hhHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTS--------MSEGD-ELGAE 104 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~--------~s~~~-e~reE 104 (282)
.|..+.+.+..++..+..++..+..+.+.... |-..|+..+..+...+... .++.+ .+.++
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~----------~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E 88 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDIS----------RVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAE 88 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHH
Confidence 34455555555555555555555555544443 3334446666666533321 22222 35566
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
+..|..+++.+...+...-.+-..|..-....+.+|.+|+..+..+.
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766666666676666677777777777777663
No 69
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.46 Score=48.18 Aligned_cols=181 Identities=16% Similarity=0.202 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKG 116 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e 116 (282)
.....+..++..++...+.+...|.+++ .|..--..|++.-+.++.|.+--.+....++..+.+--..++.+.
T Consensus 264 ~~~~~i~~~i~~lk~~n~~l~e~i~ea~-------k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~ 336 (622)
T COG5185 264 KFVHIINTDIANLKTQNDNLYEKIQEAM-------KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3334444455555555555555444433 455566677788899998877766665555555555555566666
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.+|+..+.+|..|.+.+..+..+++. +.|.-.+. +.|..+..++.+++..++-+.+.|.+.+.+-
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~q~~k--q~Is~e~f-------------e~mn~Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHKQLRK--QGISTEQF-------------ELMNQEREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh--cCCCHHHH-------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 66666555555555555555555442 23333322 5667777778888888888877777766532
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccc
Q 023459 197 KSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTARDV 246 (282)
Q Consensus 197 k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (282)
+ .+.+.-+++++.-+.++.--..++..+- -...-.+||..+..
T Consensus 402 ~---leaq~~~~slek~~~~~~sl~~~i~~~~----~~i~~~~nd~~l~i 444 (622)
T COG5185 402 K---LEAQGIFKSLEKTLRQYDSLIQNITRSR----SQIGHNVNDSSLKI 444 (622)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccH----HHHhhcCCCCceee
Confidence 2 2233444444444444333333332220 01234456665555
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.66 E-value=0.64 Score=47.42 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
..+...+......|.....++.-..+.+...+
T Consensus 396 ~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 396 EKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555444
No 71
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.59 E-value=1.3 Score=50.26 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
....++.++.++...+.+....+.++..+..++..++. . -+..-+++..++.+....+..+...+..+...+.
T Consensus 880 a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e--~-----l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~ 952 (1353)
T TIGR02680 880 QRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEE--S-----VGAMVDEIRARLAETRAALASGGRELPRLAEALA 952 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555554422 1 0112345555555555555555555555555555
Q ss_pred cchhh
Q 023459 195 NCKSE 199 (282)
Q Consensus 195 ~~k~e 199 (282)
.....
T Consensus 953 ~a~~~ 957 (1353)
T TIGR02680 953 TAEEA 957 (1353)
T ss_pred HHHHH
Confidence 44444
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.58 E-value=0.4 Score=54.66 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023459 205 KTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
..+..++..+..+...+....+
T Consensus 456 ~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 456 EELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.6 Score=50.95 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=37.4
Q ss_pred HHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 90 DLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 90 dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...++.+...++..++...+..+++-..+.+..+.+...|.-+...+++.+...++.+..+
T Consensus 781 ~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~ 841 (1174)
T KOG0933|consen 781 AKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQL 841 (1174)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666666666666666666666666665555555
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.56 E-value=0.4 Score=41.10 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEK 115 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~ 115 (282)
..+.-..+.+-..++..|..++.+++.....+..+. .++...+..+.+-....+.+..++..|..++..+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~----------~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLI----------LDAENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555554444433333 3333333333333333334444444455555555
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+...+.+.......++..++....++...|...
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555555555555555555555555555555554
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.55 E-value=0.64 Score=44.47 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023459 211 DERILLWQKEIEEAEK 226 (282)
Q Consensus 211 e~~I~~l~~e~~e~~~ 226 (282)
...|..++.+++-+++
T Consensus 275 ~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 76
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.54 E-value=0.11 Score=49.59 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 023459 75 ARAEELEIEVSRLQH 89 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~ 89 (282)
.+.+.|..++..++.
T Consensus 184 ~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 184 ERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455555554
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.54 E-value=0.14 Score=54.12 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
++.++..++.+.+.+...+..+......=+.-+..+|+++.++.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333333333333333
No 78
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.53 E-value=0.83 Score=45.40 Aligned_cols=42 Identities=7% Similarity=0.163 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTAR 244 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~~ 244 (282)
.....++...+.++..++..+..+...+.-. ...-|++|+=.
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~--~I~AP~dG~V~ 328 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDSQKG--VIKAPEDGVLH 328 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--EEECCCCeEEE
Confidence 3455566666666666666655555444322 34568888843
No 79
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.52 E-value=0.82 Score=52.74 Aligned_cols=194 Identities=23% Similarity=0.287 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHH-------
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAE------- 104 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reE------- 104 (282)
+..+..++..++.+...+..+-..+..++..++.....+. .+-..+.+++..-....+.++..
T Consensus 54 ~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~----------~~~~~l~~~~~~~~~~~~~l~~~~se~~~q 123 (1822)
T KOG4674|consen 54 LSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLS----------SERSNLSWEIDALKLENSQLRRAKSELQEQ 123 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666654444443 33333333332222222223333
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH----------HHhhhhhchHHHHHHhHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREM----------EEKSKRVRVEEEMREKLDE 174 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~----------~~~~~~gg~keelrekl~e 174 (282)
-+.+...++...++|+.+..++..|...++.+..++.+++.++.+.-.... -|++=--..-.-|..++..
T Consensus 124 kr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 124 KRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344445555566666666666666666666666666666655421111 0111111111122222333
Q ss_pred HHHHHHHHHHh----HHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 175 KDREISGFKKK----VDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKT 235 (282)
Q Consensus 175 ke~ei~~Lk~~----~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~ 235 (282)
+......+..+ +..|...|.+++.....++..++.+...+.++...+..+..-+++|++.+
T Consensus 204 ~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~ 268 (1822)
T KOG4674|consen 204 VNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTA 268 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333 44444555555554466666666666666666666666666777777643
No 80
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.51 E-value=0.63 Score=50.77 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
.++..+.+-+-.++...+..++...|..|.+.+..-...+..|...+.+
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~e 513 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNE 513 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333333
No 81
>PRK09039 hypothetical protein; Validated
Probab=96.49 E-value=0.17 Score=48.99 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 79 ELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 79 ~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.++..+...+......+.+..-.+..|...|+.++..+..++..|..++...+..+.+|..|..+|...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666667777777777777777777677666666666666666666666665
No 82
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.41 Score=52.37 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.+.++..+++.+.+++..+...+...+.+|...+
T Consensus 228 ~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 228 CIEKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 4555555666666655555555555555555444
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.34 Score=49.85 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTI---EIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~---eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
+..+|+.|+.....+.+.|.+++. .++.++ .+.+-|...+...+.-+..-.+.-+.+...|..++++
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslr----------e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLR----------EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH----------HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666666666666655553332 333333 2333333666666655555555555566666666666
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVE 135 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~ 135 (282)
+...+.+++.+..+..+|+..+..
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666665543
No 84
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.37 E-value=0.62 Score=43.01 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
..+...+..|..++..+..+....-.....+. ..++++-.|+..|...+..+..
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~---~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLN---NNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333333333 1223333444444444444443
No 85
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.16 E-value=1.8 Score=50.01 Aligned_cols=195 Identities=22% Similarity=0.325 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------
Q 023459 31 KVTELTKKVESLELENKEMKGTIKK--------------LTIEIEGSEEDKRILESVAARAEELEIEVSRLQH------- 89 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~--------------le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~------- 89 (282)
.+..+...+..|..++..++..+.. +...|+.++.....|+ +|.-.|..-+.....
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~---er~~~l~~~i~~~~q~~~~~s~ 731 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLE---ERNKNLQSTISKQEQTVHTLSQ 731 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444 3444555555554444 333333332222221
Q ss_pred HHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHH
Q 023459 90 DLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMR 169 (282)
Q Consensus 90 dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelr 169 (282)
+|....+-+..+..++..|+.+-.-....-..+..+...|..+...+.-.+.+++.-...++.-+++ .+..+.
T Consensus 732 eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~-------~k~~~e 804 (1822)
T KOG4674|consen 732 ELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMA-------TKDKCE 804 (1822)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4444444444455555555555555555566667777778888888888888888877777553331 234444
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEK------------------NSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~------------------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
.++.++...+..|+.+......++-++.... ...-..+......|..|..++.++++.|...
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666665555544444333333332221 3444566666666666677777777766666
Q ss_pred hccc
Q 023459 232 KDKT 235 (282)
Q Consensus 232 ~~~~ 235 (282)
..++
T Consensus 885 ~~~~ 888 (1822)
T KOG4674|consen 885 KTQL 888 (1822)
T ss_pred HHHH
Confidence 5544
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.12 E-value=2.2 Score=47.61 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
|..|..+|.+.-+.+..+..=|.+....|.+...=+.-+.+-.+++..++..+..++.-|.....++..+..-|....+.
T Consensus 1513 i~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~ 1592 (1758)
T KOG0994|consen 1513 IQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRD 1592 (1758)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444444444444444443333333344333322222333345566777777777778888888888899999999999
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREM 155 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~ 155 (282)
+....+.+.++..+....|........++.+|+.++.+|..+-+
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965443
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.12 E-value=1.6 Score=44.96 Aligned_cols=120 Identities=21% Similarity=0.310 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEI-------------------EGSEEDKRILESVAARAEELEIEVSRLQHDL 91 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eI-------------------e~lr~~~~~le~i~~r~~~L~ee~~~~q~dl 91 (282)
.|..|+.+++.|-.++.-++.+=..|+..| ..+..-.+.++.+++..+.|+.++..+.+++
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455566666555555555555444444444 2233344666778888888888888888888
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 92 VTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 92 ~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+-..-+.+.-.........+......+..++.++.-+...++.++..+..|.....-|
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88777777776677777777777777777777777777777777776666666555444
No 88
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.09 E-value=2.1 Score=44.10 Aligned_cols=194 Identities=19% Similarity=0.286 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
+..+...+..+......+..++..+...-.=-..+......+..+=..|......+...+.+....|..+.+.+..+...
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~ 387 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ 387 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 33444455555555555555555554422111122333333445555566666667777888888888888899999999
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLES 191 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~ 191 (282)
+.........+...+.+|........+++..+...+..... .=+++.=-|+=+....-+......|..+....+....
T Consensus 388 l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR--~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 388 LEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR--RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999988888888888888888743 2233333455566666666666666666655555444
Q ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 192 ELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 192 ~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
.+..+...-..+...+..+.....++-....=.+.+
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~ 501 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQL 501 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332444444555544444444444434443
No 89
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.01 E-value=0.33 Score=51.49 Aligned_cols=145 Identities=23% Similarity=0.268 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 70 LESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 70 le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
-..|..|...|+........++.......+.+++....|..++++..+..+.+.+.++.+-.......-.+..-|++...
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 35566777777766666555555554444444444444444444444444444444333333222222222222222222
Q ss_pred HHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-----------hhhHHHHHHHHHHHHHHH
Q 023459 150 LEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-----------NSAEKTVKEMDERILLWQ 218 (282)
Q Consensus 150 le~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-----------~~~e~~~~~~e~~I~~l~ 218 (282)
. + +.|..++..+...|++++.+.+....++..-++.. .....-+.+.-..|.++-
T Consensus 640 E----L----------~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v 705 (717)
T PF10168_consen 640 E----L----------ERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELV 705 (717)
T ss_pred H----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 34444555555555556655555555444222221 233344555555566666
Q ss_pred HHHHHHHHHH
Q 023459 219 KEIEEAEKVI 228 (282)
Q Consensus 219 ~e~~e~~~~~ 228 (282)
+++..+.+.+
T Consensus 706 ~~ik~i~~~~ 715 (717)
T PF10168_consen 706 KQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHhh
Confidence 6555555543
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=2.6 Score=44.72 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=43.2
Q ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHH
Q 023459 97 EGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKD 176 (282)
Q Consensus 97 ~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke 176 (282)
.|..++.++..+...+..+......+...|..|+.....+......+...+..+.+ ..+..+.+..+..
T Consensus 497 ~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~-----------~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 497 KHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQ-----------SLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555444444444432 3444444455555
Q ss_pred HHHHHHHHhHHhHHHhhccc
Q 023459 177 REISGFKKKVDDLESELGNC 196 (282)
Q Consensus 177 ~ei~~Lk~~~e~L~~~l~~~ 196 (282)
+....|+.+.+..+..+-++
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444433
No 91
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.89 E-value=0.95 Score=43.30 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
+..+...+.+++..+..++..+..++..++.+.
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l 167 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQL 167 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444333
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.86 E-value=0.81 Score=51.06 Aligned_cols=31 Identities=6% Similarity=0.283 Sum_probs=16.2
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEM 49 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~el 49 (282)
++.||.=...-. .+..++.++..+......+
T Consensus 228 i~~W~~~~~~~~--~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 228 IDDWLRDIRASQ--GFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 778887222222 4455566665555544433
No 93
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.91 Score=49.83 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
.|.+++..|..+...++....+|.....+.-.+..+.
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~ 271 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRREL 271 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333333
No 94
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.78 E-value=0.31 Score=48.88 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKR 161 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~ 161 (282)
.++.+-...+.+.++++.. +++...+..+.....+..++..+...+++.++.++.++..+..++.......+
T Consensus 328 sqleSqr~y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~------ 399 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK------ 399 (493)
T ss_pred hhhhHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4444555555666666555 66777777777777788888888888888888888888888888877722111
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 162 VRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 162 gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
....+...|.+...-....+.++ +....+.+.+++.+|.+|+.+++++.-.+.+
T Consensus 400 ------------~~~E~n~~l~knq~vw~~kl~~~---~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 400 ------------EEREENKKLIKNQDVWRGKLKEL---EEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred ------------HHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 11122222222222222222111 1334566788899999999999998766554
No 95
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.73 E-value=1.5 Score=43.56 Aligned_cols=117 Identities=11% Similarity=0.176 Sum_probs=80.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHH
Q 023459 59 EIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEK 138 (282)
Q Consensus 59 eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek 138 (282)
++++++++..++. +++...+.......++.+.++.|+.....+-............+......+...+.+
T Consensus 75 qlddi~~qlr~~r----------tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~ 144 (499)
T COG4372 75 QLDDIRPQLRALR----------TELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144 (499)
T ss_pred hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 777777777777777777788888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 139 KVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 139 ~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
+-.+|..+++.+ . .-..++..++..+-.+-+.|..-...|+++..++
T Consensus 145 Q~q~lqtrl~~l----~-------~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 145 QAQDLQTRLKTL----A-------EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888 2 2334455555555555555554455555544444
No 96
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.60 E-value=2.3 Score=40.73 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTARD 245 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (282)
.+....+...+..+..++.++..+..-+. +-+..-|++|+=..
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~--~~~i~AP~dG~V~~ 284 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQ--RLIIRSPVDGTVQS 284 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcEEECCCCcEEEE
Confidence 33444555556666666655555443222 22456789997543
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.51 E-value=3.2 Score=43.23 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKR 68 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~ 68 (282)
++..|..++..+..+...+..++..++.+++.+.....
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555555555555555555554443
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=1.4 Score=47.17 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 73 VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
.-++..-|..++..|...+..-....+.++-.+...+..|+.....++-...+|..|...+++++.++-.|-.....|.-
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44555555577777776666666666666666777777777777777776777777777777777766666555555421
Q ss_pred --HHHHHhhhhh-chHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 153 --REMEEKSKRV-RVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 153 --~~~~~~~~~g-g~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
|-+.-.++-- +-+.+|......++.-+..++.+.+.|..+.....++
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~e 564 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111 1145666677777777777888877777766655444
No 99
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.43 E-value=1.9 Score=38.87 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKR 161 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~ 161 (282)
..+.++|+-+. .+..+.+++..++.-...++..-..+-+.-..++++...+...|..|+..-+.+
T Consensus 50 ~q~~s~Qqal~----~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl----------- 114 (193)
T PF14662_consen 50 KQLKSLQQALQ----KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL----------- 114 (193)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------
Confidence 66666664333 334455666666666666666666666666666666666666666666655555
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHH-------HHHHHHHHHHHHHHH
Q 023459 162 VRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMD-------ERILLWQKEIEEAEK 226 (282)
Q Consensus 162 gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e-------~~I~~l~~e~~e~~~ 226 (282)
-+-.+.+..+..++-.+...|+.++-..+.-+......-.+.++.+.++. .-+.+++-++..++-
T Consensus 115 ~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 115 LAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555666666666666666665555444332222133333333333 334444445444443
No 100
>PF13514 AAA_27: AAA domain
Probab=95.38 E-value=5.7 Score=44.02 Aligned_cols=38 Identities=37% Similarity=0.483 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+.+...+..+..++..++.++..+...+..++..+..+
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666655
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.35 E-value=2 Score=38.62 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=77.4
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 19 DFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEG 98 (282)
Q Consensus 19 ~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~ 98 (282)
|+-||.+++- .-|..|+.+|+.+..........+..+..+..++..-...+. .++..++..+.. |
T Consensus 17 YYndIT~~NL-~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~----------~e~~eL~k~L~~----y 81 (201)
T PF13851_consen 17 YYNDITLNNL-ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE----------EEVEELRKQLKN----Y 81 (201)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHH----H
Confidence 4445555542 467777788887777777777777777777777776665555 555555555544 3
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+.-+..+..+++.+......+..+.-+-+-|+.....++....+|..+....
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777777777777777777777777777777776666655
No 102
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.27 E-value=6 Score=43.61 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTI-------KKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAE 107 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI-------~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~ 107 (282)
|..++..|+.+++...... +.+..+.+.+.........-..|...+.+...++.++.......+.++...+..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333 333344444444444455555666666666666665555554444444444444
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
+...+..-..++.-+...+..++...+...-+...+-+++..
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~ee 534 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEE 534 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333333333333333333333333333333
No 103
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.20 E-value=2.2 Score=38.29 Aligned_cols=32 Identities=41% Similarity=0.597 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+++...+..++......+++|..|+.++.-.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444
No 104
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.18 E-value=0.17 Score=47.92 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hcccchhHHHHHHH
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTS-------MSEGDELGAEVAEL 108 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~-------~s~~~e~reEm~~L 108 (282)
+--|-.|.+++.+....+...+.+|+.|+ .++.+|+.|||+- .-+.-++|.|+.+|
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLk-----------------sQL~RMrEDWIEEECHRVEAQLALKEARkEIkQL 129 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELK-----------------SQLARMREDWIEEECHRVEAQLALKEARKEIKQL 129 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999999999999999888 8999999999873 33445555556666
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVREL 143 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~L 143 (282)
+..|+..++.+.+..+.|...=.+|.--++++..|
T Consensus 130 kQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 130 KQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred HHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence 66655555555555555555555554444444333
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.16 E-value=1.1 Score=42.94 Aligned_cols=76 Identities=26% Similarity=0.248 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 75 ARAEELEIEVSRLQHDLVTS----MSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~----~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+-..|..++..++....+. .++...+++++..+...+......+.+++.+...+...+.....++..+...|.++
T Consensus 179 ~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 179 DRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555421111 12233333444444444444444444444444444444444444444444444333
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.03 E-value=5.1 Score=44.86 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=24.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
......+-+.+++..|..|++..+.+...+...+..
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el 652 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEEL 652 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555666777777777777777777777666554
No 107
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.89 E-value=0.97 Score=37.78 Aligned_cols=84 Identities=26% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
|..+..++..+..++..+...-+.+..+|-.+......+.....+-..|+.++..+++-..+...-+.+-.++..+|+.+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44444444444444444444444444555555544444444555555555555555554444433333333334444443
Q ss_pred Hhhh
Q 023459 112 LGEK 115 (282)
Q Consensus 112 Iee~ 115 (282)
+.++
T Consensus 105 v~Dl 108 (120)
T PF12325_consen 105 VQDL 108 (120)
T ss_pred HHHH
Confidence 3333
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.88 E-value=6.2 Score=42.76 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKR----ILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAE 107 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~----~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~ 107 (282)
+..++.+|..|+.....+..+...+..-|..+..|++ -|+....|...|++++....+++.....+...-..++..
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~ 180 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNE 180 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhH
Confidence 3344445555555544444444455555544444333 344455666677777777777666655555555555555
Q ss_pred HHHHHhhhhhhHHHHH
Q 023459 108 LKRVLGEKGVKLEELE 123 (282)
Q Consensus 108 LkseIee~e~eIeelE 123 (282)
+.+.+..+-.++....
T Consensus 181 ~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555544444433
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=3.4 Score=44.47 Aligned_cols=65 Identities=28% Similarity=0.407 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe 113 (282)
.+.+..-...++.-|.+++..|+.++.+.+.+. -+...+...+.+..+.|..+....+-|+..+.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~----------~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQ----------VENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555555555555554444444 44444444444444444445555555554444
No 110
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.82 E-value=5.4 Score=45.36 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHH
Q 023459 54 KKLTIEIEGSEEDKRILESVAARAEELEI-EVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKE 132 (282)
Q Consensus 54 ~~le~eIe~lr~~~~~le~i~~r~~~L~e-e~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e 132 (282)
+++...++.+.....+|..|...=..... .+...-..++.....++. +...+......++....++..++..
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQ-------LSRDLGRARDELETAREEERELDAR 305 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333222222 222333345554444444 4444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 023459 133 KVESEKKVRELERNVGLL 150 (282)
Q Consensus 133 ~~~~ek~i~~LE~kl~el 150 (282)
+..++..+..++.++..+
T Consensus 306 ~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 306 TEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555555555
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.74 E-value=4.2 Score=39.10 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 45 ENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 45 Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+..-+..=...+...++.++.|...|.
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~ 164 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLM 164 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555556666665554444
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.67 E-value=6.3 Score=41.17 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.++.++.++..++..-.+.+..|..++..+
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444455555445444445555555555544
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.60 E-value=1.8 Score=37.74 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..+...+..+..++......+..+..++..++
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444
No 114
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.59 E-value=4.5 Score=41.27 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKV 134 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~ 134 (282)
+-..|.++..+|+..+.+|..+...+.+|...+.
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444555555555555555444444443
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.91 Score=47.24 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
......+...+..++.++.++..|+..+.+++..|..|+.++..+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.53 E-value=3.5 Score=37.24 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVL 112 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseI 112 (282)
.+|..+...|...+..+.+--..+..+|..++...+.+.-.-..+..|++++..+-...-+-...+..+-+.-..++.+.
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666665555544445555555555555544444333333333344444444
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH--HHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVRE--MEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~--~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
..+...+..+..+-..+-.....+.++..+|-.+...|.++= - -.+--....-+.+....|.+|..-+..+.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~------e~l~~~~da~l~e~t~~i~eL~~~ieEy~ 171 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF------ESLICQRDAILSERTQQIEELKKTIEEYR 171 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444433333333333333333333332222221100 0 01223333445555555555555555555
Q ss_pred Hhhccchhh
Q 023459 191 SELGNCKSE 199 (282)
Q Consensus 191 ~~l~~~k~e 199 (282)
.-..+++.+
T Consensus 172 ~~teeLR~e 180 (193)
T PF14662_consen 172 SITEELRLE 180 (193)
T ss_pred HHHHHHHHH
Confidence 444444444
No 117
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.52 E-value=2.9 Score=36.33 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccchh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEI--------EGSEEDKRIL-ESVAARAEELEIEVSRLQHDLVTSMSEGDEL 101 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eI--------e~lr~~~~~l-e~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~ 101 (282)
.+.++.-....+...+..+...+...+.-- +.+..+...+ +.|..|..+|. ++..-....+-...-+
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~----~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELL----KLKKKIGKTVQILTHV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 566666666777777777777766666522 2222222222 34666666554 2222222222222334
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHhhhhhchHHHHHHhHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE-------VREMEEKSKRVRVEEEMREKLDE 174 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele-------~~~~~~~~~~gg~keelrekl~e 174 (282)
++.+..+...+......+......+..+...+..+......+......+. +-.+ -.+=+.....+.+
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l------l~Dy~~~~~~~~~ 156 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL------LRDYDKTKEEVEE 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH------HHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444441 1111 0122344555555
Q ss_pred HHHHHHHHHHhHHhHHHhh
Q 023459 175 KDREISGFKKKVDDLESEL 193 (282)
Q Consensus 175 ke~ei~~Lk~~~e~L~~~l 193 (282)
+...|..++.+++.+...+
T Consensus 157 l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 157 LRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666666555443
No 118
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.49 E-value=2.5 Score=35.33 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHh
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESE 192 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~ 192 (282)
+.....+...++.++..++..++.|..+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 119
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.34 E-value=8.2 Score=40.73 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=15.9
Q ss_pred HHHhHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHH
Q 023459 182 FKKKVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKE 220 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e 220 (282)
.+.....|...+.+++..- ...+.++..++++..-.++-
T Consensus 350 a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~ 391 (754)
T TIGR01005 350 AQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQL 391 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444443332 23334444444444444443
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.28 E-value=4.1 Score=40.62 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEI 60 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eI 60 (282)
.+..+..++..++.++..+...+..+...+
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555544443
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.26 E-value=8.1 Score=40.38 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
..++.+|..+++.+...|..+..++..+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 122
>PF13166 AAA_13: AAA domain
Probab=94.24 E-value=8 Score=40.20 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVI 228 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~ 228 (282)
..+..++..|.+++.++......+
T Consensus 438 ~~~~~~~~~i~~l~~~~~~~~~~~ 461 (712)
T PF13166_consen 438 EEIKKIEKEIKELEAQLKNTEPAA 461 (712)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333444444444444444333333
No 123
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.09 E-value=3.6 Score=42.11 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=44.5
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH---hHHh
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK---KVDD 188 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~---~~e~ 188 (282)
+......++++-.++..+-..+.--...+..++.++..+ ..-+.|.|..-+++...+.++..++..+.. .++.
T Consensus 275 l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l----~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~ 350 (563)
T TIGR00634 275 VGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQI----KRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA 350 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 333333344444444444444433345566677777766 334556677777777777777777776653 3444
Q ss_pred HHHhhccch
Q 023459 189 LESELGNCK 197 (282)
Q Consensus 189 L~~~l~~~k 197 (282)
|..++..++
T Consensus 351 L~~el~~l~ 359 (563)
T TIGR00634 351 LEEEVDKLE 359 (563)
T ss_pred HHHHHHHHH
Confidence 444444333
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.07 E-value=8.9 Score=40.14 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=12.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
+.....+..++.+|..|-..+..++..+.
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 125
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.04 E-value=0.015 Score=62.55 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 75 ARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
.....|+.++..++.++-+..+....+.+.+......+..+..++..-......++..+..++.+|++|..+|.++|.
T Consensus 658 ~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~ 735 (859)
T PF01576_consen 658 EEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQ 735 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446688888888888888888888888888999999999999998999999999999999999999999999976
No 126
>PF13166 AAA_13: AAA domain
Probab=93.85 E-value=9.4 Score=39.67 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 174 EKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 174 eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
.....+..+...+..+...+..++......+.++..++.++..-..=+..+...+..
T Consensus 414 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~ 470 (712)
T PF13166_consen 414 EYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKR 470 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444444444333445555566665554433334444443333
No 127
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.83 E-value=3 Score=36.26 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.++..++..+..+..++..+...+..+.
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 128
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.73 E-value=12 Score=40.59 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVL 112 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseI 112 (282)
..|.+.+..++......+.+|.-+......+..++.+|. .-+..+|.|+-+...+.++.+.++..+...+
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ----------~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ----------DTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 457888899999999999999999999999999998888 8888889999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRE 142 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~ 142 (282)
.....+|--+.+++.+--..+..++.+...
T Consensus 158 sAk~~eIf~~~~~L~nk~~~lt~~~~q~~t 187 (1265)
T KOG0976|consen 158 SAKAHDIFMIGEDLHDKNEELNEFNMEFQT 187 (1265)
T ss_pred hhhhHHHHHHHHHHhhhhhHHhHHHHHHHH
Confidence 888888887777776666666655554433
No 129
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.68 E-value=12 Score=40.19 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=47.7
Q ss_pred HHHhHHHHHHHHH----------HHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHH----------HHHHHHHHHH
Q 023459 168 MREKLDEKDREIS----------GFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILL----------WQKEIEEAEK 226 (282)
Q Consensus 168 lrekl~eke~ei~----------~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~----------l~~e~~e~~~ 226 (282)
+..+++.++++|. +|+++++.|+.++...-+-| ..+-.+|..++.+|++ |+....++.+
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~ 726 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEA 726 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHH
Confidence 3566666666665 68899999999987655555 4444667777666654 4555666666
Q ss_pred HHhhhhcccccccccc
Q 023459 227 VIAGLKDKTLDGVNGT 242 (282)
Q Consensus 227 ~~~~~~~~~~~~~~~~ 242 (282)
-|...-+.+. +.||-
T Consensus 727 e~~~~~~~~~-~~~g~ 741 (762)
T PLN03229 727 ELAAARETAA-ESNGS 741 (762)
T ss_pred HHHHhhcccc-cccCC
Confidence 6666555444 45543
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.46 E-value=9.3 Score=38.35 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.4
Q ss_pred ccccchhhHH
Q 023459 257 SRLNWQLPLA 266 (282)
Q Consensus 257 ~~~~~~~~~~ 266 (282)
..-++.|||-
T Consensus 295 ~~G~l~~PV~ 304 (420)
T COG4942 295 LRGQLAWPVT 304 (420)
T ss_pred ccCCcCCCCC
Confidence 3444567763
No 131
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=93.44 E-value=3.5 Score=33.44 Aligned_cols=98 Identities=27% Similarity=0.237 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 023459 47 KEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREV 126 (282)
Q Consensus 47 ~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeI 126 (282)
..+...|.....++.... ..+..|...|...-..++.+++.......+-..........+............+|
T Consensus 10 ~~~~~~l~~kr~e~~~~~------~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei 83 (126)
T PF13863_consen 10 FLVQLALDTKREEIERRE------EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444454444 45556666666666667776666655555556666666666666666666777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 127 DGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 127 e~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..|...+..+...+..++..+...
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766666655
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.35 E-value=5.8 Score=35.67 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREI 179 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei 179 (282)
.+++++..++......+..+.++..+...|..+.+..+..+..|...+..-+- .| . .=..++..+...+.++
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k------dK-~-~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK------DK-Q-SLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HH-H-HHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777632 11 0 2234566666777777
Q ss_pred HHHHHhHHhHHHhhccchhh
Q 023459 180 SGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 180 ~~Lk~~~e~L~~~l~~~k~e 199 (282)
..|+-+.+.|...+..+..+
T Consensus 103 ~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666555
No 133
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.24 E-value=7 Score=37.87 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=59.6
Q ss_pred chHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh----------------------------hhhHHHHHHHHHHH
Q 023459 163 RVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK----------------------------NSAEKTVKEMDERI 214 (282)
Q Consensus 163 g~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~----------------------------~~~e~~~~~~e~~I 214 (282)
..++.+..+++.....+.+|.-.+..+..+++++..+. ..+=-+...+...|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 56777888888888888888887777777777766551 11224667888999
Q ss_pred HHHHHHHHHHHHHHhhhhccccc--cccccc
Q 023459 215 LLWQKEIEEAEKVIAGLKDKTLD--GVNGTA 243 (282)
Q Consensus 215 ~~l~~e~~e~~~~~~~~~~~~~~--~~~~~~ 243 (282)
..+++|..-+.-.|.-.+. +.+ ..+|+-
T Consensus 206 ~q~qeE~~l~k~~i~KYK~-~le~k~~~~~~ 235 (319)
T PF09789_consen 206 KQLQEEKELLKQTINKYKS-ALERKRKKGII 235 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhcccccc
Confidence 9999999999999988887 444 556653
No 134
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.16 E-value=16 Score=40.30 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHhhhh------cccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHH
Q 023459 69 ILESVAARAEELEIEVSRLQH-----DLVTSM------SEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESE 137 (282)
Q Consensus 69 ~le~i~~r~~~L~ee~~~~q~-----dl~~~~------s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~e 137 (282)
+|.++.++-..|+..+.++.. +.++-+ -.|...+.++..++...+..+.++..+.+++..++..+.+++
T Consensus 203 ~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe 282 (1072)
T KOG0979|consen 203 KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELE 282 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 334444566666688887775 333333 356677888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHH
Q 023459 138 KKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLW 217 (282)
Q Consensus 138 k~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l 217 (282)
..+.++..++...-. ++ .+-..++-++-..+......+..+...+-.+++....+++.+......|.++
T Consensus 283 ~~~~et~~~~s~~~~-~~----------~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 283 SEKKETRSKISQKQR-EL----------NEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred hHHHhHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777621 11 1111222222222222233333333333333333355666677777777777
Q ss_pred HHHHHHH
Q 023459 218 QKEIEEA 224 (282)
Q Consensus 218 ~~e~~e~ 224 (282)
+.++...
T Consensus 352 q~el~~~ 358 (1072)
T KOG0979|consen 352 QAELQET 358 (1072)
T ss_pred Hhhhhhc
Confidence 7765543
No 135
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=14 Score=39.43 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 023459 79 ELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEK 158 (282)
Q Consensus 79 ~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~ 158 (282)
...+++..+...+-.+...+=.+-.+.......+..+......++..|..+......+...|..|+.++.-+-.-.
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~---- 540 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE---- 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----
Confidence 3445555555555555555555555566666666677777777777777777777777777777777777762200
Q ss_pred hhhhchHHHH---HHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Q 023459 159 SKRVRVEEEM---REKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKE 220 (282)
Q Consensus 159 ~~~gg~keel---rekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e 220 (282)
+++..++ ...+....+.+.++....+.|...+........+.+..+..+..+|..+...
T Consensus 541 ---~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 541 ---SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221 2233334444444444444444444433333344444444444444444443
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.16 E-value=0.6 Score=41.39 Aligned_cols=69 Identities=28% Similarity=0.381 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..++.++.+.-..-.+....+..+...+..+...+......|..|+..+..++.++.+++..+.+.
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444445666666666666666666666666666666666666555555
No 137
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.15 E-value=3.7 Score=40.81 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 118 KLEELEREVDGLKKEKVESEKKVR-ELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~-~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
++.++......|+..+..+...+. ++.--...| .|||.+--++++++.+-++=-..+|..|+.....++..++
T Consensus 220 el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~L----qEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~-- 293 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLKEQYQREYQFILEAL----QEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA-- 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Confidence 333333344444444444443222 333334444 5677777788888888887777788888777777766655
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 197 KSEKNSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 197 k~e~~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
=++..+.+.+...|...++++..|+
T Consensus 294 ----Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 294 ----YQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred ----HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456677777777777888877777
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.15 E-value=2.4 Score=40.68 Aligned_cols=26 Identities=4% Similarity=0.082 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
.+...+..++...+.-..+++..+.+
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777777777777777766
No 139
>PRK10869 recombination and repair protein; Provisional
Probab=93.00 E-value=8.8 Score=39.51 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHH---HhHHhHHHhhccchhh
Q 023459 137 EKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFK---KKVDDLESELGNCKSE 199 (282)
Q Consensus 137 ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk---~~~e~L~~~l~~~k~e 199 (282)
...+..++.++..+ ..=+.|=|..=+++-.-.+++..++..|. .....|..++..+.++
T Consensus 295 p~~l~~ie~Rl~~l----~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~ 356 (553)
T PRK10869 295 PNRLAELEQRLSKQ----ISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQ 356 (553)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666 22345556666666666666666665554 3344444444444443
No 140
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.97 E-value=3.7 Score=33.79 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 40 ESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 40 ~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
+.|++...++...+..++..|+.++....-| |+.|+ .|+..+..++.
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL--~kqkd-~L~~~l~~L~~ 51 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGEL--AKQKD-QLRNALQSLQA 51 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH--HHhHH-HHHHHHHHHHH
Confidence 4455555556666666666666555444333 22222 24455555544
No 141
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.97 E-value=5.7 Score=34.50 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=62.6
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhH-------HHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKL-------DEKDREIS 180 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl-------~eke~ei~ 180 (282)
++-+.......|++=..++..|.......=..+.+...++..+.. .-..++.++ ..++.++.
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~-----------~~~~l~~~l~~~~~~~~~~r~~l~ 115 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE-----------ELERLKQELKDREEELAKLREELY 115 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666677777777777777777777777776621 122233333 33333333
Q ss_pred HHHHhHHhHHHhhccchhh------h------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 181 GFKKKVDDLESELGNCKSE------K------NSAEKTVKEMDERILLWQKEIEEAEKVI 228 (282)
Q Consensus 181 ~Lk~~~e~L~~~l~~~k~e------~------~~~e~~~~~~e~~I~~l~~e~~e~~~~~ 228 (282)
.++..+..+......++.. | ..+...+..+..+|..|+..+..+..-|
T Consensus 116 ~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 116 RVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444333 2 4455666777777777777776665543
No 142
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.96 E-value=3 Score=34.54 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=30.9
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..++..++.++.+|..|++....+++++.+++..|..+
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666788888888888888888888888887
No 143
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.87 E-value=20 Score=40.62 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcccchhHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLV-TSMSEGDELGAEVAELK 109 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~-~~~s~~~e~reEm~~Lk 109 (282)
+|...+.+..+|+.++..+..+|..+...+..+......+.....+.-.|.+++..+...+- --...-.......+.+.
T Consensus 231 ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~ 310 (1294)
T KOG0962|consen 231 KIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFE 310 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHH
Confidence 55566666666666666666666666666666665554444444555555555555444221 00111122333344444
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
..+...+......+.++..++.....+......+...++.+..
T Consensus 311 ~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~ 353 (1294)
T KOG0962|consen 311 ERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQA 353 (1294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555533
No 144
>PF14992 TMCO5: TMCO5 family
Probab=92.83 E-value=3.7 Score=39.06 Aligned_cols=124 Identities=25% Similarity=0.324 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
+..+|-.....+-..|++....|.++..+|.... .++.|..++. .
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~-------~~~~~~e~e~----------------------------~ 56 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREITKMD-------HIADRSEEED----------------------------I 56 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cccCchhHHh----------------------------h
Confidence 5566666666666666666666666666655443 3444433332 2
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
.+......+.+++-+.+.|+.+-+.+-+.|.+|.+++.+.+.+ . +-.+..+...+...+..+..+......++
T Consensus 57 ~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~-~------~~e~~~~~~~lq~sk~~lqql~~~~~~qE 129 (280)
T PF14992_consen 57 ISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETN-V------QCEDPQLSQSLQFSKNKLQQLLESCASQE 129 (280)
T ss_pred hhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC-C------CCCccchhcccHHhhhhHHHHHHHHHHHH
Confidence 2233333455566667778877777878888888887776542 2 33334344444444444444444444444
Q ss_pred Hhhccc
Q 023459 191 SELGNC 196 (282)
Q Consensus 191 ~~l~~~ 196 (282)
.++..+
T Consensus 130 ~ei~kv 135 (280)
T PF14992_consen 130 KEIAKV 135 (280)
T ss_pred HHHHHH
Confidence 333333
No 145
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.79 E-value=7.4 Score=35.37 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESV----AARAEELEIEVSRLQHDLVTSMSEGDELGAEVA 106 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i----~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~ 106 (282)
+|.-|..+....+.+...+..++...+..-+......++|+.. ..+-..++.++....|--.+.+..|+++--.+.
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~ 91 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLV 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888888887777666555555555543 345556778888888877778888888888888
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
=+...++......+--+..+..|+.+...+...+..|...-..+.
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 888888888888888888888888888888777777777766663
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=92.72 E-value=15 Score=40.51 Aligned_cols=158 Identities=26% Similarity=0.324 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-----------hcccchhHHHHHHHHHHHhhhhhh---HHHHHHHHhhhHHHHHHHHHHHH
Q 023459 76 RAEELEIEVSRLQHDLVTS-----------MSEGDELGAEVAELKRVLGEKGVK---LEELEREVDGLKKEKVESEKKVR 141 (282)
Q Consensus 76 r~~~L~ee~~~~q~dl~~~-----------~s~~~e~reEm~~LkseIee~e~e---IeelEkeIe~LE~e~~~~ek~i~ 141 (282)
+.++|++++..+.+.+..+ ..+.+.++++-.-++..|..++.. +.++++.+-.|+++..-++..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (977)
T PLN02939 195 HVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLR 274 (977)
T ss_pred cchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 5567888888888766544 234455666666677777766654 45667778888999999999999
Q ss_pred HHHHHhhHHHHHHHHHhhhhhchHHH-HHHhHHHHHHHH-----------------HHHHHhHHhHHHhhccchhhh---
Q 023459 142 ELERNVGLLEVREMEEKSKRVRVEEE-MREKLDEKDREI-----------------SGFKKKVDDLESELGNCKSEK--- 200 (282)
Q Consensus 142 ~LE~kl~ele~~~~~~~~~~gg~kee-lrekl~eke~ei-----------------~~Lk~~~e~L~~~l~~~k~e~--- 200 (282)
+||.++..- .+--+|-+.++-+ +=++.+.++..+ .+|..+++.|+..|.+..-.+
T Consensus 275 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (977)
T PLN02939 275 ELESKFIVA----QEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSS 350 (977)
T ss_pred HHHHHHHhh----hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhH
Confidence 999888665 2222232333322 233333333333 345556666665555432221
Q ss_pred --------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 023459 201 --------------NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLD 237 (282)
Q Consensus 201 --------------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~ 237 (282)
...+.-..++.+.|+--+..+.+..-.+..|++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 351 YKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1122233344455555566666666666667665544
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.68 E-value=16 Score=39.05 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
+-..|..+|..|+.++..++..+....++.+++..- ..+-....+.+..+...++.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~------------------------~~~~~~~~~~~e~~~~~lr~ 83 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQL------------------------NQELRKECEDLELERKRLRE 83 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666665555555411 11111122233334444555
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
+|.+.+..-.-+-.+...||.+-=.++++|..|.+---
T Consensus 84 e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv 121 (717)
T PF09730_consen 84 EIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV 121 (717)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 55555555555666666677766677777766665443
No 148
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.67 E-value=15 Score=38.60 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=47.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKV 186 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~ 186 (282)
.|+..+.++.+..-.+.++-..|......-++..+.|..+++.++. .-..|++++..++.++..|..+.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~-----------~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQE-----------KLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455555555555555555555566666666666677777776632 33556677777777777777766
Q ss_pred HhHHHhhc
Q 023459 187 DDLESELG 194 (282)
Q Consensus 187 e~L~~~l~ 194 (282)
..+...|+
T Consensus 233 dq~~~~Lq 240 (617)
T PF15070_consen 233 DQYLGHLQ 240 (617)
T ss_pred HHHHHHHH
Confidence 66554444
No 149
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.67 E-value=18 Score=40.81 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhh
Q 023459 38 KVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGV 117 (282)
Q Consensus 38 eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~ 117 (282)
+|..|-.+|++.-..|..++.=|.+.+.|+.-++.+..++..-..++..++....+-+.+.+++..-.......|.....
T Consensus 1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~ 1591 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADR 1591 (1758)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555555666666666666655554444444444444444444444444455555555666666666666
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
.|.-....+..+..+-...+..+..--+++++|+.
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777753
No 150
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.59 E-value=4.5 Score=36.02 Aligned_cols=121 Identities=25% Similarity=0.288 Sum_probs=76.0
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMS 96 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s 96 (282)
+=||.= ... ....+...+..|..++..++.++..++..|+.+...+..-+ .|...|. ++..+..
T Consensus 54 n~YWsF---ps~--~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~---eR~~~l~-~l~~l~~------- 117 (188)
T PF03962_consen 54 NYYWSF---PSQ--AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE---EREELLE-ELEELKK------- 117 (188)
T ss_pred eEEEec---ChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HHHHHHH-HHHHHHH-------
Confidence 667733 222 45678888889999999999999999888887765543332 3333332 2222222
Q ss_pred ccchhHHHHHHHHHHHh----hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHH
Q 023459 97 EGDELGAEVAELKRVLG----EKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMRE 170 (282)
Q Consensus 97 ~~~e~reEm~~LkseIe----e~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelre 170 (282)
+...|...+. -.-..++.+..++..+..........|--|..-+... . |.+...++.
T Consensus 118 -------~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k----~------~~~~~~i~k 178 (188)
T PF03962_consen 118 -------ELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKK----F------GMDEEDIRK 178 (188)
T ss_pred -------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh----c------CCCHHHHHH
Confidence 2222222222 2345677777777777778888888888877777765 4 667666663
No 151
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=1.3 Score=46.20 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++...+..|..|+.++.+-.+.+..|+++|..+
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666677777777776666
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.54 E-value=8.8 Score=40.96 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDK----RILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~----~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++.++..|..+...--.++..+..++..++... ..++.|.+|-+.|.+++..+...+....-. -..+| .++..
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~--LS~AE-r~~~~ 639 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV--LSEAE-REFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHH-HHHHH
Confidence 444444444444443334444444443333222 234567777777778888777655443211 11222 33444
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hhhhchHHHHHHhHHHHHHHHHHHHHhHHh
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEK--SKRVRVEEEMREKLDEKDREISGFKKKVDD 188 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~--~~~gg~keelrekl~eke~ei~~Lk~~~e~ 188 (282)
++......+..+...|+.++.+....+. ++..... ...+ .--..-+..+++-+.+--.+|.++-++++.
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~-------~i~~~~~--~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQR-------QIESQKS--PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcccc--ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333332 2221100 0000 000112345556666666666666666666
Q ss_pred HHHhh
Q 023459 189 LESEL 193 (282)
Q Consensus 189 L~~~l 193 (282)
++..+
T Consensus 711 i~~~~ 715 (717)
T PF10168_consen 711 IKKIV 715 (717)
T ss_pred HHHhh
Confidence 66544
No 153
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.49 E-value=3.5 Score=33.35 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...+..++..++.++..|..|++.+..+++++.+++..+..+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666667777777777777777777777777665
No 154
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.48 E-value=2.2 Score=33.96 Aligned_cols=80 Identities=35% Similarity=0.397 Sum_probs=55.9
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhh---hHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 71 ESVAAR--AEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGV---KLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 71 e~i~~r--~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~---eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
+.+..| ...+=.++-.+...+.+.....+.++.+...+...|..... ..+++..+...+...++.++.++..++.
T Consensus 16 ~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 16 ENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 33444566666667777777777777778888877777665 5777777777777777777777777777
Q ss_pred HhhHH
Q 023459 146 NVGLL 150 (282)
Q Consensus 146 kl~el 150 (282)
.+..+
T Consensus 96 ~l~~~ 100 (108)
T PF02403_consen 96 ELNEL 100 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 155
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.47 E-value=16 Score=38.38 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
...+|..++..++.++...+.+-..+...+++++
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~ 155 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLR 155 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHH
Confidence 4556666666666666655555444444444333
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.47 E-value=2.4 Score=40.63 Aligned_cols=48 Identities=31% Similarity=0.455 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.....+..++..++.+...+.+++..|+.+...+...+..|+.....+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555555
No 157
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=11 Score=39.16 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
|.+.+..+|.++.++++..-.+++.|..|.+-+......+..++=-++.-+.++...+.++..-......-
T Consensus 343 LkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 343 LKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 33788888888888888877888888888888877777777776666666666666666665554444433
No 158
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=16 Score=38.13 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~ 200 (282)
..-.+++.++-.|++.+..|+....+...-+
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglk 200 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLK 200 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHH
Confidence 4456777777777777777777766654443
No 159
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=92.29 E-value=7.3 Score=38.79 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
++.|-.++.+.+....-++..++.|+..++. +..=-...| .|||=+--+++++|..-.+=-..+|..|+.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~kr------dy~fi~etL----QEERyR~erLEEqLNdlteLqQnEi~nLKq 331 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKR------DYKFIAETL----QEERYRYERLEEQLNDLTELQQNEIANLKQ 331 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444444444445555555544443322 222223344 556666677888888777777778888887
Q ss_pred hHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHH
Q 023459 185 KVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEI 221 (282)
Q Consensus 185 ~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~ 221 (282)
+...++..+.=.-.+. ++.++-+.+.++.|.-+...+
T Consensus 332 ElasmeervaYQsyERaRdIqEalEscqtrisKlEl~q 369 (455)
T KOG3850|consen 332 ELASMEERVAYQSYERARDIQEALESCQTRISKLELQQ 369 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655222222 555555666666665544433
No 160
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=92.28 E-value=16 Score=37.89 Aligned_cols=132 Identities=14% Similarity=0.264 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHH----------HHHHHHHHHHHHHHhhHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKE----------KVESEKKVRELERNVGLLE 151 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e----------~~~~ek~i~~LE~kl~ele 151 (282)
+.+..++.-|.--..++..+..-+.-+...+...+..-.-+..+|+.+... ...+++.|+.+..-+..+
T Consensus 288 e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i- 366 (570)
T COG4477 288 EKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEI- 366 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 666777766666666666666666667776666666666666666655432 344455555555554444
Q ss_pred HHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHH
Q 023459 152 VREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLW 217 (282)
Q Consensus 152 ~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l 217 (282)
.+.-...--.=-.+...+...+..+..++++...+...|..+...+.++...+..+.+.|...
T Consensus 367 ---~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 367 ---LENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred ---HHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110011011223455566666666666666666666666666555555555555554444433
No 161
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.14 E-value=12 Score=36.10 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccc
Q 023459 214 ILLWQKEIEEAEKVIAGLKDKTLDGVNGT 242 (282)
Q Consensus 214 I~~l~~e~~e~~~~~~~~~~~~~~~~~~~ 242 (282)
+.+..++..--+|+|..+++....+|.-+
T Consensus 237 LddA~~K~~~kek~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 237 LDDAHNKADNKEKTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334433344556666666555555443
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.04 E-value=3.7 Score=34.34 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRI 69 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~ 69 (282)
-+.+|...|-.++.++..++.++..+...=+.++.+.-.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888777777777744433
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.00 E-value=22 Score=38.91 Aligned_cols=9 Identities=11% Similarity=0.099 Sum_probs=4.3
Q ss_pred hhhHHHHhh
Q 023459 262 QLPLAAVTA 270 (282)
Q Consensus 262 ~~~~~~~~~ 270 (282)
.-|++-+.+
T Consensus 586 ~~~il~~~~ 594 (980)
T KOG0980|consen 586 NDPILDGSL 594 (980)
T ss_pred ccHHHHHHH
Confidence 445555443
No 164
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.95 E-value=4.6 Score=34.80 Aligned_cols=68 Identities=32% Similarity=0.518 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
++..+..+|..|..+...+...++.|+..+..+.. --.-++|...+.++..++..|..++..|+..-.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~---------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS---------EPTNEELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555555666666666666666666666666622 124466788888888888888888888877443
No 165
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.94 E-value=4.8 Score=39.46 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
+.....-...+..-...++..+.++...|... |++|..|..-|..++..+..++-.....+.++...+......
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKT------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444445555556666666666666644 499999999999888887776666555544444444444444
Q ss_pred HhhhhhhHHHHHHHHh
Q 023459 112 LGEKGVKLEELEREVD 127 (282)
Q Consensus 112 Iee~e~eIeelEkeIe 127 (282)
+......+..+..+++
T Consensus 296 V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 296 VSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=15 Score=39.74 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH----HHHHHHHHHHHHHH---HHHHHHhhhhcccchh
Q 023459 29 NNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE----SVAARAEELEIEVS---RLQHDLVTSMSEGDEL 101 (282)
Q Consensus 29 ~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le----~i~~r~~~L~ee~~---~~q~dl~~~~s~~~e~ 101 (282)
|+.+.+|+.-|..+..++..+++....++.+.+.+.+...-.. ...+.-..|+.++. ..+.++.+-......-
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~ 735 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQ 735 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCC
Confidence 4467778888888888888888888888888777776554442 12233333333333 2222333333333444
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISG 181 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~ 181 (282)
.+++..+..++........-+.++...-...+........+=+...+.+-. + -|+++ ++-+.....++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~--~------~~~qe----qv~El~~~l~e 803 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLND--N------LGDQE----QVIELLKNLSE 803 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhh--h------hhhHH----HHHHHHHhhhh
Confidence 555555555555555555555444444444444444444433333333311 1 12222 22222222333
Q ss_pred HHHhHHhHHHhhccchhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 023459 182 FKKKVDDLESELGNCKSEK-------NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTA 243 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e~-------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~ 243 (282)
.......+..++..++... .....-+..+..-=..+-++...+++-...|+++.-.+-|||.
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~ 872 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIK 872 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3333333333333333221 2222223333333333445555566666668888888887774
No 167
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.88 E-value=12 Score=35.90 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcccchhHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH----DLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~----dl~~~~s~~~e~reEm~~Lks 110 (282)
|..+|+.|..++..++..-...+.... .|. +.+....+.|...+.--.. -+..-......+.++-.-|.+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~---edi---ei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~S 77 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYL---EDI---EILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH---HHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 455666666666655554333322211 111 2222333333333333222 222223334445666667777
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
.++..+...+-++.+|+++....+..-.....-..--..+|.-=.-+++.=.++++.|.-.+..+...+.-|-.+...-.
T Consensus 78 kLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskae 157 (305)
T PF14915_consen 78 KLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAE 157 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHH
Confidence 77777777788888888777776655444333333333333211234555577888888888877777777766666666
Q ss_pred Hhhccchhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 191 SELGNCKSEK-------NSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 191 ~~l~~~k~e~-------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
+....++++- ++..--+...++.+.+.+-++.+|+.|...
T Consensus 158 sK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qn 204 (305)
T PF14915_consen 158 SKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQN 204 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666663 333334556667777777777777666543
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.81 E-value=6.7 Score=39.71 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=16.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
+...+.+..++..|.+|++++.+|.--+
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 3344556666677777776666665433
No 169
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.54 E-value=0.054 Score=56.90 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHH---HHhhhhcccchhHHHHHHHHHHHh
Q 023459 82 IEVSRLQH---DLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 82 ee~~~~q~---dl~~~~s~~~e~reEm~~LkseIe 113 (282)
.++..++. ++......+..++++|+.++...+
T Consensus 274 ~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~ 308 (713)
T PF05622_consen 274 KEIDELRQENEELQAEAREARALRDELDELREKAD 308 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444443 333344455555666666655433
No 170
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.47 E-value=6.1 Score=31.53 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
....+..++..++.++..|..++..+..+++++.+++.+|.++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666677777777777777777776665
No 171
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.47 E-value=17 Score=36.50 Aligned_cols=104 Identities=11% Similarity=0.197 Sum_probs=60.5
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccch
Q 023459 21 FDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDE 100 (282)
Q Consensus 21 ~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e 100 (282)
|..|.+-. .+..+..++...+.+...++.+-.....++...+.++++.+ .+-..+.......+.++---..-++.
T Consensus 74 fqlddi~~--qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~---~~~~~a~~n~~kAqQ~lar~t~Q~q~ 148 (499)
T COG4372 74 FQLDDIRP--QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVR---QELAAARQNLAKAQQELARLTKQAQD 148 (499)
T ss_pred hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 67777777777777777777777777778888888776665 44444445555555444443333444
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGL 129 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~L 129 (282)
+..++..|......+......+...-..|
T Consensus 149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333333
No 172
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.42 E-value=0.057 Score=58.15 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 81 EIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 81 ~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..++..++..+.+-......+...+..+..+++.+...+++-......+...+..+...|.++..++...
T Consensus 242 ~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 242 ESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3555555555555444555555556666666666666666655566666666666666666665555543
No 173
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.40 E-value=29 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=12.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
..+.+......+...+.........+..+|-
T Consensus 750 ~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 750 SKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 3344444444444444433333333333333
No 174
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.36 E-value=14 Score=39.84 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSM 95 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~ 95 (282)
..+..+...++.+...+...+..++..++.++.+..-++ ..++.++..+....
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E----------~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESE----------QKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554443333 55555555554433
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.27 E-value=11 Score=34.27 Aligned_cols=26 Identities=4% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 208 KEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 208 ~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
..+...+...+..+=....-|+.+..
T Consensus 136 ~~l~~~l~~~r~~l~~~l~~ifpI~~ 161 (302)
T PF10186_consen 136 SQLQSQLARRRRQLIQELSEIFPIEQ 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 33444444444444444445677754
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.26 E-value=8.2 Score=32.57 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=10.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 123 EREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 123 EkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
..++..+...+..++.++..+++++.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444333
No 177
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.23 E-value=11 Score=39.74 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhHHH
Q 023459 31 KVTELTKKVESLELENKEMKG-------TIKKLTIEIEGSEEDKRI 69 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elke-------kI~~le~eIe~lr~~~~~ 69 (282)
++.+|+...+.|.-+...+.+ +|++++-=|+.-+....+
T Consensus 112 rLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna 157 (861)
T KOG1899|consen 112 RLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA 157 (861)
T ss_pred HHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch
Confidence 677777666666555555444 445555545444433333
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.17 E-value=12 Score=34.20 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~l 63 (282)
+..+...+..+......+..+|+.+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.79 E-value=23 Score=36.94 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
..+..++..++.++..+..++..+..++..++.....+.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~ 243 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQ 243 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554444443
No 180
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.78 E-value=0.46 Score=45.96 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
..+..++..+.+-.+....+...+....+-|..+...+..+.-+|.+|+..+...--.|.+|++++..+|.
T Consensus 84 stV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 84 STVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 56666666666666666666666666777777777777777777777777777777777777777777753
No 181
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.63 E-value=11 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhh
Q 023459 80 LEIEVSRLQHDLVTS 94 (282)
Q Consensus 80 L~ee~~~~q~dl~~~ 94 (282)
|...+..+..++.++
T Consensus 32 l~~~~~~~~~~~vtk 46 (177)
T PF07798_consen 32 LNDSLEKVAQDLVTK 46 (177)
T ss_pred HHHHHHHHHHHHHhH
Confidence 334444444444443
No 182
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.54 E-value=16 Score=34.70 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLG 113 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIe 113 (282)
+|.........++++...--+.++++++.-- ..|..|.-.|+++.-++..+++.-... +...+.
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL------~q~etrnrdl~t~nqrl~~E~e~~Kek----------~e~q~~ 87 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQL------DQLETRNRDLETRNQRLTTEQERNKEK----------QEDQRV 87 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3455566666677777766666666665332 334455555555555555544433222 333333
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 114 EKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 114 e~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
+--..+..++.+...+.+-+..+.+-|++||+.-..||. .||. .---+...+..+.+-=+...-|+++|
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr------akRa-----ti~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER------AKRA-----TIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------hhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677778888888888888888888888888843 2222 22334444444444555556666666
Q ss_pred ccch
Q 023459 194 GNCK 197 (282)
Q Consensus 194 ~~~k 197 (282)
.+.+
T Consensus 157 dEke 160 (333)
T KOG1853|consen 157 DEKE 160 (333)
T ss_pred hHHH
Confidence 5443
No 183
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.53 E-value=3 Score=36.91 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=11.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
++..+......|..+..++..|+.++..++..|+....
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 184
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.50 E-value=17 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhhhHHHHH
Q 023459 53 IKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 53 I~~le~eIe~lr~~~~~le 71 (282)
++++..+|++|+.|+.|+.
T Consensus 406 lKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 5667777777776655544
No 185
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.30 E-value=24 Score=38.17 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
++..+.++.+.+..+..+-..+-+.+..-..-|.+| .+.++.-...=..|...++-.++++..|+=++-.|..+|.
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l----~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKALQEKEKLIAEL----SEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444 2222221112234445555555555555554444444443
Q ss_pred cchhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 195 NCKSEK--------NSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 195 ~~k~e~--------~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
..+++ .-..++--+.=+.|.-|.-|=+++.-|
T Consensus 166 -ir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 166 -IRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 111233333445566666666666544
No 186
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.18 E-value=2.1 Score=36.92 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=30.3
Q ss_pred ccccccccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 17 TEDFFDPDQDG--SNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 17 ~~~W~dv~~~e--~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
-=||++=+... .+..+..+..+|..|..++..+...+..+..++..+..
T Consensus 57 kiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 57 KIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred EEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666644433 23356677777777777777777776666666666553
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.07 E-value=30 Score=37.11 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+|..|..++..+...+..+..+.+++......++.+...++
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e 75 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLE 75 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888887766665
No 188
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.90 E-value=2.7 Score=32.10 Aligned_cols=68 Identities=24% Similarity=0.381 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKT 235 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~ 235 (282)
|...+.+++..|..|..+-+.|...-....+--..+...+...+..|..+...+....+-+..|.++.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777776655443333355566666777777777777777776666666543
No 189
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=28 Score=36.26 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Q 023459 208 KEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTARDVK 247 (282)
Q Consensus 208 ~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (282)
.+-+.-+.+|+.+.++..-.|..++ ..--.+||-+|-|
T Consensus 545 aEke~HL~nLr~errk~Lee~lemK--~~a~k~~i~~d~~ 582 (654)
T KOG4809|consen 545 AEKEAHLANLRIERRKQLEEILEMK--KPAWKPGIHADMW 582 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcCCCHHHH
Confidence 3344445566666666655555555 3334567766665
No 190
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.59 E-value=4.8 Score=36.06 Aligned_cols=75 Identities=29% Similarity=0.418 Sum_probs=42.9
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 114 EKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 114 e~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
........++..+..-+.....++..|.+|+.+|.++ .+-...|..+....+.+|..++...+.+...+
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el-----------~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL-----------QRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555566666666666666 22344556666667777777777777777666
Q ss_pred ccchhh
Q 023459 194 GNCKSE 199 (282)
Q Consensus 194 ~~~k~e 199 (282)
.+++.+
T Consensus 176 ~~~e~~ 181 (190)
T PF05266_consen 176 ENAELE 181 (190)
T ss_pred HHHHHH
Confidence 655443
No 191
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.45 E-value=21 Score=34.50 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
..|..++..+..+...+....+.|..+..++.+-- .+=+-=|+-+.+.+..|-.+.+-+..
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777766667777777777777766653 22223344444444444444444433
No 192
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.40 E-value=27 Score=35.66 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHH
Q 023459 42 LELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEE 121 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIee 121 (282)
|..=+..++..=+.-+..|..|.-.-.. |+..+..+|-.+.... -|-..|..++..|++
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~y----------Le~kvkeLQ~k~~kQq-----------vfvDiinkLk~niEe 373 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLY----------LEKKVKELQMKITKQQ-----------VFVDIINKLKENIEE 373 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHH----------HHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHH
Confidence 3334444444444445556655544444 4477777776544321 267778888888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc-cchhhh
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG-NCKSEK 200 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~-~~k~e~ 200 (282)
+..+.-.+-=++..+++.+..|..-+....- .+ ++-+.....+.-+++.++..+-.|..... +++...
T Consensus 374 LIedKY~viLEKnd~~k~lqnLqe~la~tqk-~L----------qEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 374 LIEDKYRVILEKNDIEKTLQNLQEALANTQK-HL----------QESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHhHhHhhhhhhhHHHHHHHHHHHHHHHHH-HH----------HHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888877766621 11 22233333344444444444444444333 222221
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 201 ------NSAEKTVKEMDERILLWQKEIEEAEKVIA 229 (282)
Q Consensus 201 ------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~ 229 (282)
.+..+.+-..+..|..|++...+++|+..
T Consensus 443 ksvsqclEmdk~LskKeeeverLQ~lkgelEkat~ 477 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATT 477 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44446666667777777777777777663
No 193
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.23 E-value=19 Score=35.02 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----cchhHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSE-----GDELGAEVAE 107 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~-----~~e~reEm~~ 107 (282)
..|..-+.....++..+..++..+...+.++..|.+.|. +.+.+.+.-...-.+. ...+-..+..
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR----------~~la~~r~~~~~~~~~~~~~ere~lV~qLEk 137 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLR----------EKLARQRVGDEGIGARHFPHEREDLVEQLEK 137 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----------HHHHhhhhhhccccccccchHHHHHHHHHHH
Confidence 345555555566666666666666666666666665555 4444444322211111 1222222333
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+...+..+...+..+-.+.+.+..+......+..-|...|..+
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444445555555555554
No 194
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.03 E-value=1.5 Score=46.36 Aligned_cols=28 Identities=29% Similarity=0.633 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
|+.++..++.++..|..++..|+.++..
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777766654
No 195
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.01 E-value=18 Score=32.99 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
+.+|+-|.+.+.+...++.....+|..++.+.
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql 40 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQL 40 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46688888888888888888888888888443
No 196
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.94 E-value=40 Score=36.97 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=24.6
Q ss_pred hcccchhHHHHHHHHHHHhhhhhhHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 95 MSEGDELGAEVAELKRVLGEKGVKLEE-------LEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 95 ~s~~~e~reEm~~LkseIee~e~eIee-------lEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...|+...+.+..+......+-..-.. .+..|...+..+..+..+|..+.+..+..
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~ 485 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRA 485 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443333333 33334444444444444444444444443
No 197
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.84 E-value=37 Score=36.46 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGT 52 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkek 52 (282)
.+.++..+|.-|+.-+..-...
T Consensus 347 eLdK~~~~i~~Ln~~leaReaq 368 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALEAREAQ 368 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555443333
No 198
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.79 E-value=6.7 Score=33.12 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
....+++.++..++..+..++..+...+..|+.+|..+
T Consensus 85 ~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 85 KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555666666666666666555
No 199
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.62 E-value=12 Score=30.38 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEK 115 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~ 115 (282)
.+++...+..+..-+.++......+..-. ..+..+...|.+.+.....-+-+-......+...+..-.......
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e------~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k 79 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQRE------EELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEK 79 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666665555 444455666667777666666666666666666777777777888
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
..+|..+..+|..|...+..++..|..+..
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877654
No 200
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.54 E-value=6.1 Score=37.96 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhH-------HHH
Q 023459 135 ESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAE-------KTV 207 (282)
Q Consensus 135 ~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e-------~~~ 207 (282)
.+...+.++|.|...- | + .-.+|..+...+-.+++.|+..++.+...+..++.+..+.. ...
T Consensus 81 ~lk~~l~evEekyrkA----M------v-~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKA----M------V-SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAH 149 (302)
T ss_pred HHHHHHHHHHHHHHHH----H------H-HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666 3 2 23556666666666666666666666666666555532222 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccc-ccCCCCcccccccc
Q 023459 208 KEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGTARDV-KLNGDGEEEDSRLN 260 (282)
Q Consensus 208 ~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (282)
..+...+..++.++.+...+|. =+||-+.+ -.||+++.++.+..
T Consensus 150 d~L~~e~~~Lre~L~~rdeli~---------khGlVlv~~~~ngd~~~~~~~~~ 194 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELIE---------KHGLVLVPDATNGDTSDEPNNVG 194 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HCCeeeCCCCCCCccccCccccC
Confidence 4455555555555555544441 14444333 44777776555443
No 201
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.53 E-value=51 Score=37.63 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
+.++.++.++++++..+..++-.+.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555566666666665555555444
No 202
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.53 E-value=0.14 Score=53.96 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 023459 75 ARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVL 112 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseI 112 (282)
.+-+.|...++.++.++.......+.++.++..+...+
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444444433333333
No 203
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.26 E-value=8.4 Score=29.36 Aligned_cols=66 Identities=24% Similarity=0.459 Sum_probs=41.6
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
+...+.+....|+.+..+-..|....-.+...|+.|..++.+++. .-..+..++...+.++..|+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~-----------~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEK-----------QIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777777777777777777777642 224444455554554444443
No 204
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=37 Score=35.63 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhhcccch
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILES------------VAARAEELEIEVSRLQHDLVTSMSEGDE 100 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~------------i~~r~~~L~ee~~~~q~dl~~~~s~~~e 100 (282)
..|+.+.++|+.+...++.+++.+...+-.++...+..-+ -|++...+-.++-.++.++-..-.+...
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~ 125 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTN 125 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777777766555544332211 2333333333444444455444444445
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHH---HHH---HhHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEE---EMR---EKLDE 174 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~ke---elr---ekl~e 174 (282)
++++...+..........-..++.+--.|..++++..-+=..|=+.-.+||- |+ .++.. .|| -+-+-
T Consensus 126 ~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE-EN------IsLQKqVs~LR~sQVEyEg 198 (772)
T KOG0999|consen 126 VQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE-EN------ISLQKQVSNLRQSQVEYEG 198 (772)
T ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc------chHHHHHHHHhhhhhhhhH
Confidence 5555555555555555555555555555555555554444444444444421 01 22211 122 22233
Q ss_pred HHHHHHHHHHhHHhHHHhhccchhhh----hhhHHHHHHHHH
Q 023459 175 KDREISGFKKKVDDLESELGNCKSEK----NSAEKTVKEMDE 212 (282)
Q Consensus 175 ke~ei~~Lk~~~e~L~~~l~~~k~e~----~~~e~~~~~~e~ 212 (282)
+.-+|.-|.+..+-|..++.+.-.-+ ++++..+..++.
T Consensus 199 lkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ 240 (772)
T KOG0999|consen 199 LKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQ 240 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777766654443 444444444433
No 205
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.07 E-value=17 Score=31.76 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=45.0
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 92 VTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 92 ~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
.+.+.-++.++.++..+..++.+++..+..+..+.+.|+..-.....++.+.-+...
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444566788888888888888888888888888888888888888887777774
No 206
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.93 E-value=2.5 Score=31.29 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAA 75 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~ 75 (282)
.+..+..++..++.++..++.+.+.++.+|..++.+...++.+|+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 578899999999999999999999999999999778777775554
No 207
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.83 E-value=6.7 Score=30.66 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
+.|.=+..+|++|+.+-..|..+.+.+.+....+..+...+...-..++.+++-+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888887777766666666666777777777777766554
No 208
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.63 E-value=52 Score=36.73 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKS 159 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~ 159 (282)
|+.++..+...|.+...-|.-.-..-..|..+.+..+..+.....++..++.+...+...|+.-+.-++.++.
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~------- 525 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEK------- 525 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344444444444443333333334445777777777788888888888888888888887777777777744
Q ss_pred hhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 160 KRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 160 ~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
++..+......+..........+..|...+..+...
T Consensus 526 ----se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~ 561 (1041)
T KOG0243|consen 526 ----SEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRL 561 (1041)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 555555666666667777777776666666654433
No 209
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=87.60 E-value=1.4 Score=43.20 Aligned_cols=45 Identities=27% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
.|.+.++..+..|..++..+..+...+..+++.+..++.++..+|
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666666666666666664
No 210
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.55 E-value=2.2 Score=34.70 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
....+..++..++.++..++.+...+..+|..++.+...++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 68889999999999999999999999999999998777777
No 211
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=87.52 E-value=32 Score=34.18 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---cccchhHH-HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 72 SVAARAEELEIEVSRLQHDLVTSM---SEGDELGA-EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 72 ~i~~r~~~L~ee~~~~q~dl~~~~---s~~~e~re-Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
.+..+.+..+..+..+......-. ...+.... -+..|+..+......+..+..+...-.......+..+..++..+
T Consensus 250 ~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~ 329 (458)
T COG3206 250 SARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQI 329 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHH
Confidence 344555555555555554222111 11111222 47778888888888888888888888888888888888888777
Q ss_pred hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 148 GLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 148 ~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
... . ...-.....+..-.+.....|...+..++..+..+-... .++++++....+-...+....+++
T Consensus 330 ~~e----~------~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 330 AAE----L------RQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred HHH----H------HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 2 223333333344455555556666666666555543333 778888888888888888888877
Q ss_pred HHHH
Q 023459 225 EKVI 228 (282)
Q Consensus 225 ~~~~ 228 (282)
.-..
T Consensus 400 ~~~~ 403 (458)
T COG3206 400 SIQE 403 (458)
T ss_pred HHhh
Confidence 6544
No 212
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=87.51 E-value=23 Score=32.57 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+.+...-...|+.-|......+..+...+..+...++.++
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e 58 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLE 58 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455556666666666666666655555554444
No 213
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.25 E-value=8.7 Score=29.32 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 170 EKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
+.+.-+..++.+|+.+...|..+..
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444444444444444443333
No 214
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.22 E-value=21 Score=31.77 Aligned_cols=33 Identities=45% Similarity=0.616 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
...+...|..|+.++..++..+..+..+...++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666664
No 215
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=87.18 E-value=31 Score=33.75 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKE----------------MKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQ 88 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~e----------------lkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q 88 (282)
++..|.++|..||.-+.. +-..+..+...+.-|.+ ..|+.|.+|-..|-.++..+.
T Consensus 210 ~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 210 RAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA 281 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777765544 44556666666665532 345656666555555554433
No 216
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.16 E-value=28 Score=33.13 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHH
Q 023459 42 LELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEE 121 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIee 121 (282)
|++++..++...+++.....+++-++..+. +....-+..|-... ..+...+.......+.+..-|.+
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~K----------ek~e~q~~q~y~q~---s~Leddlsqt~aikeql~kyiRe 116 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNK----------EKQEDQRVQFYQQE---SQLEDDLSQTHAIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443332 22222222222222 23566677788888888999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..-+.|+.-+....-.+.+++++|.-.
T Consensus 117 LEQaNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 117 LEQANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred HHHhccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 217
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=87.11 E-value=7.8 Score=37.47 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHH
Q 023459 41 SLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLE 120 (282)
Q Consensus 41 ~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIe 120 (282)
..++....+..-++.+-.+|. ++|++|+.|..-|..++..+...|-.......+++.........++.....+.
T Consensus 238 nIe~~~~~~~~~Ldklh~eit------~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~ 311 (384)
T KOG0972|consen 238 NIEQKVGNVGPYLDKLHKEIT------KALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLD 311 (384)
T ss_pred HHHHhhcchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444455555555555554 46699999999999999999888877776666666666666666666666666
Q ss_pred HHHHHHhhhHHH
Q 023459 121 ELEREVDGLKKE 132 (282)
Q Consensus 121 elEkeIe~LE~e 132 (282)
++..+|+.++.+
T Consensus 312 eVm~e~E~~Kqe 323 (384)
T KOG0972|consen 312 EVMDEIEQLKQE 323 (384)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 218
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=86.99 E-value=40 Score=34.80 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=49.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 24 DQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTS 94 (282)
Q Consensus 24 ~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~ 94 (282)
.+.+.+..+..|...-..++..+..+...+.++.++|..+. -++.-....|..++..+...+.+.
T Consensus 331 a~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs------~rld~qEqtL~~rL~e~~~e~~~~ 395 (531)
T PF15450_consen 331 AQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALS------WRLDLQEQTLNLRLSEAKNEWESD 395 (531)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444457888888999999999999999999999998887 445556666668888777766554
No 219
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.75 E-value=0.82 Score=44.04 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 171 KLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 171 kl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
.+......+...+..+..+...+..++........+...++..+...+..+....++|.||..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 445555555555555666666666666665666777888888888889999999999999987
No 220
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.70 E-value=9.1 Score=34.72 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=15.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
.+|.+++.+.+..+.+|+++...|+.++..
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 221
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=6.5 Score=33.97 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAAR 76 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r 76 (282)
.+..|..++..|++++..+...+..+...|..++.-...|+.+...
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~ 52 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA 52 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888889999999999999999999988888888777777744433
No 222
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=86.36 E-value=14 Score=29.24 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=11.1
Q ss_pred HhhhhcccchhHHHHHHHHHHHhhhhhhH
Q 023459 91 LVTSMSEGDELGAEVAELKRVLGEKGVKL 119 (282)
Q Consensus 91 l~~~~s~~~e~reEm~~LkseIee~e~eI 119 (282)
+...+...+.+..+|..|...+..-...|
T Consensus 47 yfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 47 YFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333334444444333333333
No 223
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.22 E-value=36 Score=33.50 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHH
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDRE 178 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~e 178 (282)
+.+..++-.+...+..-+..+..++.-+..++.+...++-++..+.+..++-+ ++-.++.++
T Consensus 109 qkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke------------------eesq~LnrE 170 (401)
T PF06785_consen 109 QKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE------------------EESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH------------------HHHHHHHHH
Confidence 34444555566666666666666666777777777777777666666555441 122233333
Q ss_pred HHHHHHhHHhHHHhhccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 179 ISGFKKKVDDLESELGNCKSEK----NSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l~~~k~e~----~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
+++.-.-.-.|..+.+.-=.++ ..++--|..+++.++||--|++.+...-.+.+
T Consensus 171 LaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~ 228 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMK 228 (401)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333333334444444322222 55667777788888888888887766444443
No 224
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.17 E-value=59 Score=36.68 Aligned_cols=32 Identities=3% Similarity=0.030 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
++.+.+.+...|+..+...-.+++.+..+++.
T Consensus 59 ~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 59 ERKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 45555556666666666666666666655554
No 225
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.11 E-value=38 Score=33.66 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHHHhHHHHHHHHHHH------------HHhHHhHHHhhc-cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 165 EEEMREKLDEKDREISGF------------KKKVDDLESELG-NCKSEKNSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 165 keelrekl~eke~ei~~L------------k~~~e~L~~~l~-~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
-..+..++.+....+..+ +.++..+..+.. ....+-...+..+...+..+...+..+...
T Consensus 245 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 245 IDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445555555555543 455555554443 233333556667777777777777766543
No 226
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.10 E-value=53 Score=35.33 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+-.++++|+.+...+..+.+.+..++..++
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk 436 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLK 436 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555555555555554
No 227
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.10 E-value=12 Score=33.47 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=53.0
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
+.......+..+.....+...++..+..++.+|-+|+++...+ .+.++.+..++.........++..+.
T Consensus 108 ~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 108 LLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555556667777888888888888888877766 33556666777777777778887777
Q ss_pred hHHHhhccc
Q 023459 188 DLESELGNC 196 (282)
Q Consensus 188 ~L~~~l~~~ 196 (282)
..+.+.++.
T Consensus 177 ~~e~~F~~~ 185 (190)
T PF05266_consen 177 NAELEFQSV 185 (190)
T ss_pred HHHHHHHHH
Confidence 777666544
No 228
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.77 E-value=54 Score=35.06 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
++...-+..++.++..++.+++.+.+++..+
T Consensus 271 re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~ 301 (716)
T KOG4593|consen 271 RENRETVGLLQEELEGLQSKLGRLEKLQSTL 301 (716)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666677777776666554
No 229
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=85.56 E-value=2.2 Score=41.72 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
++..|+.+++.+.++...+..++..+..+..++.+|+.
T Consensus 149 ~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 149 LEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333333333333
No 230
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.52 E-value=12 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.+..|......|..++..+...+..+...+..+..-..+++
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777764444444
No 231
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.48 E-value=11 Score=34.16 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIE 59 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~e 59 (282)
.+..++..+++++.++++++..+...
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35566666666666666666665544
No 232
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=85.47 E-value=20 Score=34.98 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=58.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK- 200 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~- 200 (282)
..+|.++|+++-++++..-+..-++++++. .-.+..-..|+.-+.....|...+..++...
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~------------------~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~ 63 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELS------------------KLQDKCSSSISHQKKRLKELKKSLKRCKKSLS 63 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 456777777777788887777777777772 2223334444444555555555555554432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
.+....++.++.+|.+.+..+.+++..
T Consensus 64 ~e~~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 64 AEERELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 556778888999999999999998853
No 233
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.38 E-value=28 Score=32.12 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+++.+|..|..+....-+++..+..||..++..|+..+.........+..+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777777777777777766666666666655555
No 234
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.27 E-value=40 Score=34.93 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=19.6
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+....-.++..+...|..+.++++.+-.....+-..|+.-
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555444444444444
No 235
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.26 E-value=50 Score=34.24 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..+..+...+..+..+..-.. .+...+...|.++..++..+
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~-------Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQ-------EENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444444 44444444444444444444
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.02 E-value=22 Score=31.65 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=47.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~ 200 (282)
.....+..|.+++..+...+..|+.++..... .|.. ...+..+..++.+ |+.+...|..++......
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~----~r~~-~~eR~~~l~~l~~-------l~~~~~~l~~el~~~~~~- 132 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK----GREE-SEEREELLEELEE-------LKKELKELKKELEKYSEN- 132 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccc-cHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc-
Confidence 33444455555555555555555555555511 1100 1123334444444 444444444444422111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKT 235 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~ 235 (282)
--..+..+...+..++..+....-=|..|..-.
T Consensus 133 --Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 133 --DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 114556666666666666666655555555433
No 237
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.00 E-value=8.8 Score=38.88 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..-.+-....+.++...+..++..+..+++++..|+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555556666666777777777777777777777777777
No 238
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.75 E-value=58 Score=34.57 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
.+++++++-.+.-...+.++..++
T Consensus 373 ~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 373 LRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666
No 239
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.64 E-value=21 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
.++.+++.|+..+..++-.+..+..+=+.++.-...|. .+..+..+.+.+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~----------~q~~s~~qr~~e 62 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ----------AQNASRNQRIAE 62 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34555555555555555555555555454444433333 666665554444
No 240
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.62 E-value=61 Score=34.73 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+-.++-.+|..|+.....++..+.++..++....
T Consensus 528 qee~~~kqie~Lee~~~~Lrneles~~eel~~k~ 561 (786)
T PF05483_consen 528 QEEKMLKQIENLEETNTQLRNELESVKEELKQKG 561 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444444
No 241
>PF15294 Leu_zip: Leucine zipper
Probab=84.43 E-value=39 Score=32.27 Aligned_cols=142 Identities=23% Similarity=0.378 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------H---Hhhhhcccchh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH------D---LVTSMSEGDEL 101 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~------d---l~~~~s~~~e~ 101 (282)
-..-|..+|..|..++..+++.+..++..-...-.+...|+ ..+..++. . +.......-.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~----------~~L~~lq~~~~~~~~k~~~~~~~q~l~dL 195 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLE----------AQLKELQDEQGDQKGKKDLSFKAQDLSDL 195 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhccccccccccchhhH
Confidence 35668899999999999999999999988887777777777 66666665 1 12222233334
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISG 181 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~ 181 (282)
...|..++..++.- ..........|+.....+-+.+-.+...+..-+ ++++.+=---..=-.|+.-+..+..+|++
T Consensus 196 E~k~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~ae-keLekKfqqT~ay~NMk~~ltkKn~QiKe 271 (278)
T PF15294_consen 196 ENKMAALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAE-KELEKKFQQTAAYRNMKEILTKKNEQIKE 271 (278)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcch-hhHHHHhCccHHHHHhHHHHHhccHHHHH
Confidence 44555555443322 333333444444444444444433333322220 11110000011223566666666666666
Q ss_pred HHHhH
Q 023459 182 FKKKV 186 (282)
Q Consensus 182 Lk~~~ 186 (282)
|++..
T Consensus 272 LRkrl 276 (278)
T PF15294_consen 272 LRKRL 276 (278)
T ss_pred HHHHh
Confidence 66543
No 242
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.41 E-value=42 Score=32.97 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
.++..+...|..|++++++|.-=|+-|.
T Consensus 328 sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 328 SPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 7788899999999999999977666543
No 243
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.27 E-value=51 Score=33.57 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
+.|+.+.+....+|..|+.++..|..++++++..
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666555544
No 244
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.17 E-value=34 Score=31.48 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=84.6
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 18 EDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSE 97 (282)
Q Consensus 18 ~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~ 97 (282)
..|+-+..... .+..+...+..+...+...+..+..++.++..+..+...|. .++.....+-......
T Consensus 14 ~~~~~~~~l~~--~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~----------~k~~~~~~~~~~l~~~ 81 (264)
T PF06008_consen 14 GAWPAPYKLLS--SIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQ----------EKATKVSRKAQQLNNN 81 (264)
T ss_pred hhhhhHHHHHH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 34555555555 67778888888888888888888888888888877776666 6666655555555555
Q ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHhhHHH
Q 023459 98 GDELGAEVAELKRVLGEKGVKLEELEREVDGLKK-----EKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 98 ~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~-----e~~~~ek~i~~LE~kl~ele 151 (282)
.+.+......|...|......|..+...+..+-. .-..+...+++-+..+.++.
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777777777777777777776666 55666666777776666663
No 245
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.07 E-value=48 Score=35.31 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
++...+..+..++..+.+.+......+..
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444444444443
No 246
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.88 E-value=35 Score=31.27 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..+|..+..+++.++.....++.-+...+..+..|++++..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433
No 247
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=83.78 E-value=55 Score=33.50 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 023459 55 KLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKV 134 (282)
Q Consensus 55 ~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~ 134 (282)
....+|+.++...+-.. |-.|.++|-.-..+-+-- ++......-.+.+..+++-+..--...++.+...+-.|+..+.
T Consensus 263 ~~kKe~de~k~~~~l~~-~l~~keeL~~s~~~e~~i-~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~ 340 (554)
T KOG4677|consen 263 HFKKEIDEQKLLLDLFR-FLDRKEELALSHYREHLI-IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQII 340 (554)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhc-cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33445566554443322 667777776555554433 3333333445777788888888888888899999999999999
Q ss_pred HHHHHHHHHHHHhhHH
Q 023459 135 ESEKKVRELERNVGLL 150 (282)
Q Consensus 135 ~~ek~i~~LE~kl~el 150 (282)
.++-++++|+......
T Consensus 341 d~EAq~r~l~s~~~~q 356 (554)
T KOG4677|consen 341 DIEAQDRHLESAGQTQ 356 (554)
T ss_pred HHHHHHHhHHHHhHHH
Confidence 8888888888877766
No 248
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.76 E-value=15 Score=35.44 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=14.5
Q ss_pred ccccchhhHHHHhhhHhhhhhh
Q 023459 257 SRLNWQLPLAAVTAAAVVCVCY 278 (282)
Q Consensus 257 ~~~~~~~~~~~~~~~a~~~~~~ 278 (282)
+.|.-.+|+|-.+..|||+++.
T Consensus 110 ks~~~PP~~V~~V~~aV~iLl~ 131 (344)
T PF12777_consen 110 KSYANPPEAVKLVMEAVCILLG 131 (344)
T ss_dssp HHSSS--HHHHHHHHHHHHHTT
T ss_pred HhhCCCcHHHHHHHHHHhhHHh
Confidence 5665566677778888888764
No 249
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=83.58 E-value=62 Score=34.94 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=9.1
Q ss_pred hhhchHHHHHHhHHH
Q 023459 160 KRVRVEEEMREKLDE 174 (282)
Q Consensus 160 ~~gg~keelrekl~e 174 (282)
+-..++++++.++.+
T Consensus 555 ~a~~Lk~ei~kki~e 569 (762)
T PLN03229 555 KAEKLKAEINKKFKE 569 (762)
T ss_pred hhhhhhHHHHHHHHH
Confidence 445566666666665
No 250
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.40 E-value=58 Score=33.46 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHhHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 181 GFKKKVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 181 ~Lk~~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
++-...+.+..++..+.+.. ..++.++..+...+..+-.++...
T Consensus 326 ~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 326 EVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332 444444444444444444444444
No 251
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.36 E-value=0.36 Score=50.88 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
++...-+.-++.+...|+.++..++.+-.-|.+-
T Consensus 277 r~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~l 310 (722)
T PF05557_consen 277 RQSQENVELLEEEKRSLQRKLERLEELEEELAEL 310 (722)
T ss_dssp ----------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666666655555543
No 252
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.21 E-value=27 Score=32.72 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=33.1
Q ss_pred hhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 93 TSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 93 ~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.+|-.++..+..++..+++...+-+++-++...++.+..+++.+++.|+...+-|
T Consensus 125 ~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666655556655666666665555555555555544444
No 253
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=82.52 E-value=23 Score=28.21 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
......+..+...+..++..+.+++.-+.+|+
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444
No 254
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.51 E-value=41 Score=31.10 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=21.0
Q ss_pred HhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 184 KKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 184 ~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
..++.|+..+...+++...+...+..+...+.-|+.+++++.+-
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444555555556666666665443
No 255
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=29 Score=29.12 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
..-..+..+.+.+..+.-....++..++++++-+.+|+
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555544455555555555555444444
No 256
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=81.79 E-value=4.7 Score=32.51 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
|......|..+++.+...+..+...+..+..
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~ 34 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEK 34 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555543
No 257
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=28 Score=28.75 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...+.+..+..+....+..|+.|++.+..+++.+.+-|+.|+++
T Consensus 64 dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrel 107 (114)
T KOG3501|consen 64 DKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLREL 107 (114)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888999999999999999999999999999998
No 258
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.42 E-value=11 Score=27.56 Aligned_cols=35 Identities=11% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.+|..|..++..+..++..+...|..++++..++.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666555555
No 259
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.29 E-value=27 Score=28.15 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRE 142 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~ 142 (282)
-+..|+..++..+..|..+++.+..++..+.+++..+..
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555544443
No 260
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.11 E-value=40 Score=30.02 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+...+..+...+..+...+..|+..+..++.+|.++..+...+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555555555444444
No 261
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.86 E-value=68 Score=34.19 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHH---HHHHHHHHHHHHhhHHHHHHHH
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKV---ESEKKVRELERNVGLLEVREME 156 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~---~~ek~i~~LE~kl~ele~~~~~ 156 (282)
|++.....+..+++ ++...++.|...|...++++..+-..+...-.-.. .-+..|.+....|..
T Consensus 44 le~e~~~~y~~kve------~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~------- 110 (660)
T KOG4302|consen 44 LEQECLEIYKRKVE------EASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKP------- 110 (660)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHH-------
Confidence 44555555554443 44555666666666666666666655554433333 222233333333333
Q ss_pred HhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-------hh-hHHHHHHHHHHHHHHHHHHHH
Q 023459 157 EKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-------NS-AEKTVKEMDERILLWQKEIEE 223 (282)
Q Consensus 157 ~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-------~~-~e~~~~~~e~~I~~l~~e~~e 223 (282)
.-+.|+.+.++...++.++..++..|-..+..-.+.+ .. +.+++.++...|.+|+++...
T Consensus 111 -------~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~ 178 (660)
T KOG4302|consen 111 -------YLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSD 178 (660)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3378889999999999999999999999998763332 22 226667777777777666543
No 262
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.82 E-value=69 Score=34.58 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..-|+.+.....+++.....++....+++.....++.+...+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555555555555555554
No 263
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.62 E-value=24 Score=27.27 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=27.4
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...+..++..++.++.+|..|+.....+++++.+++..+..+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666667777777777777777777666554
No 264
>PF15294 Leu_zip: Leucine zipper
Probab=80.38 E-value=55 Score=31.24 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
..++..|..+-+.+++.+..++..-...=.+...++.+|.+|.-
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555554
No 265
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=80.14 E-value=3.3 Score=40.23 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 172 LDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 172 l~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
+....-.|..|...+..+...+.++|. .|-.+.-.|.+|+.++..++.-+..
T Consensus 107 ls~h~ssIS~Lqs~v~~lsTdvsNLks-------dVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 107 LSDHSSSISDLQSSVSALSTDVSNLKS-------DVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp -----------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhhhhh-------hhhhhcchHhhHHHHHHHHhcCCCC
Confidence 333344444444444444444443333 3556667777777777777765543
No 266
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.12 E-value=20 Score=36.29 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=21.3
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEI 60 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eI 60 (282)
+..|.+......+..+..|+.+|..++.++..+.+++..++..+
T Consensus 58 v~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 58 VSTWRERTSRPDPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred EEEeecCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333555555555555555555555444444444
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.03 E-value=11 Score=35.11 Aligned_cols=51 Identities=29% Similarity=0.293 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+.++.+..+-.+.+++..+.++++.+.+.+..+++.++...+.|+.++..+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333333444444444444444444444444444333
No 268
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.94 E-value=48 Score=30.23 Aligned_cols=114 Identities=24% Similarity=0.303 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++..+..++..+...+.....=+..++.-|..+-.+... ........+..+..+-.........+......|=.
T Consensus 24 e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~------~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ 97 (207)
T PF05010_consen 24 EEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQK------QKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHK 97 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------hHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Confidence 455666666666666666666566655555443322211 11222222333322222222222222222333444
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++..+..+..+.++-+.|+.-+.....+|...+++...|
T Consensus 98 ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 98 RYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555566666666666555
No 269
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.75 E-value=73 Score=32.25 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 44 LENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 44 ~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+.+..+..++..++..-..-.+..+.++
T Consensus 152 a~~qq~~~ele~~d~~~~~d~ee~kqlE 179 (446)
T KOG4438|consen 152 AKYQQALKELERFDEDVEEDEEEVKQLE 179 (446)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 3344444444444444333333344444
No 270
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.58 E-value=21 Score=27.25 Aligned_cols=47 Identities=32% Similarity=0.343 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQ 88 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q 88 (282)
...|+.++..+-+.|.-++.+++.++....++. .....|..+...++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK---EENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH
Confidence 456667777777777777777777775554444 33333444444444
No 271
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.28 E-value=27 Score=33.14 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=24.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 023459 73 VAARAEELE---IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREV 126 (282)
Q Consensus 73 i~~r~~~L~---ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeI 126 (282)
|.+|..+|+ +++..+|.----.|.+|+.+..++..+=..+-..=..+.-++..+
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444444443 455555543333444555555555555444444444444433333
No 272
>PRK11281 hypothetical protein; Provisional
Probab=78.89 E-value=1.2e+02 Score=34.29 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
++.+...+.+.|.+.+..+-.+++....+++.++
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555555555443
No 273
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.46 E-value=17 Score=26.94 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRE 142 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~ 142 (282)
+.+++..+++..-.....+.+.+.....|..++..+.+.+.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444444444444444444444444444433
No 274
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.24 E-value=86 Score=32.21 Aligned_cols=140 Identities=19% Similarity=0.330 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKG 116 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e 116 (282)
.+|..|+-..--+..+++.|.-.+..-.-=+..+. .|++.+..+-.|=-.-+=+-.++...+..| .
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiin-------kLk~niEeLIedKY~viLEKnd~~k~lqnL-------q 396 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIIN-------KLKENIEELIEDKYRVILEKNDIEKTLQNL-------Q 396 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHhHhHhhhhhhhHHHHHHHH-------H
Confidence 34555555555556666666555543332222222 233333333322211222222233333333 3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH---HHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLLE---VREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele---~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
...+.+.+.+...+.++..++-.++.....-.-|+ +-||.+|||-...=-+|..-+.+|+.+|.-|+.-...|+
T Consensus 397 e~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 397 EALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444433222222 334889999999889999999999999998886665555
No 275
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.97 E-value=1.1e+02 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKS 198 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~ 198 (282)
.++.--.+.+..+.-++..|..++..++.
T Consensus 622 Kk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 622 KKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555555555544
No 276
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=77.93 E-value=13 Score=29.29 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHH
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREIS 180 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~ 180 (282)
.++.+.++|+..+.++.+++.+++.|+.++.++|+-++ +.+=-.|+-...++-..+.
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EI------v~~VR~~~mtp~eL~~~L~ 58 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEI------VQMVRSMKMTPEELAAFLR 58 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCCHHHHHHHHH
Confidence 46778889999999999999999999999999988555 4443444444444433333
No 277
>PRK10132 hypothetical protein; Provisional
Probab=77.45 E-value=37 Score=27.85 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=12.9
Q ss_pred chhhHHHHhhhHhhhhhhcccC
Q 023459 261 WQLPLAAVTAAAVVCVCYARCR 282 (282)
Q Consensus 261 ~~~~~~~~~~~a~~~~~~~~~~ 282 (282)
|+..-||+++..++-++.+|||
T Consensus 87 w~svgiaagvG~llG~Ll~RR~ 108 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSLRK 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4555555555555656666665
No 278
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.32 E-value=61 Score=30.00 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023459 75 ARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVRE 154 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~ 154 (282)
.+..+|+.++..++.++-. ....+......+..+......++.....++.+...++.....|+.
T Consensus 5 r~k~Ele~rL~q~eee~~~--------------a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~-- 68 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRR--------------AQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE-- 68 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445555666555554333 233333334444444444444444444444444444444444421
Q ss_pred HHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHh
Q 023459 155 MEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESE 192 (282)
Q Consensus 155 ~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~ 192 (282)
+..+--.-+..|..++.++...|..|......-..+
T Consensus 69 --~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 69 --EAEMQEEEKEQLEQELREAEAEIARLEEESERKEEE 104 (246)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112344556666666666666665555444333
No 279
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.29 E-value=43 Score=28.27 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESE 137 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~e 137 (282)
.++++..+...++.....+..+..-+.+|+.++..++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555554443
No 280
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.16 E-value=55 Score=29.42 Aligned_cols=100 Identities=19% Similarity=0.404 Sum_probs=51.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhH
Q 023459 125 EVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAE 204 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e 204 (282)
+|..|..++..+....+..+..|.+|-. -=.-++|.+++.+++++.....+.+..++.-....--+ +..
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s---------~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe--dk~ 155 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSS---------ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE--DKE 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH--HHH
Confidence 3334444444444444444444444421 11335667777777777777777777777665544322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGV 239 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~ 239 (282)
.-.+.-+.-+..+++..| |...+-++..|+.
T Consensus 156 ~v~~~y~~~~~~wrk~kr----mf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 156 QVYREYQKYCKEWRKRKR----MFREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCC
Confidence 223344455566666444 4444444444444
No 281
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=77.05 E-value=1 Score=39.20 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=14.9
Q ss_pred ccchhhHHHHhhhHhhhhhhcccC
Q 023459 259 LNWQLPLAAVTAAAVVCVCYARCR 282 (282)
Q Consensus 259 ~~~~~~~~~~~~~a~~~~~~~~~~ 282 (282)
+.+-.|++.++++.|+|+|++++|
T Consensus 56 VGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 56 VGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred ecccHHHHHHHHHhheeEEEeccc
Confidence 344567787666666666666654
No 282
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=77.01 E-value=70 Score=31.28 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhhhc
Q 023459 31 KVTELTKKVESLEL-ENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH-------------DLVTSMS 96 (282)
Q Consensus 31 Ki~kL~~eI~~LE~-Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~-------------dl~~~~s 96 (282)
.+..|..+++.|.. .+..+..++..+..+++.+...+..+. .....+..|..++. .+++|+.
T Consensus 247 ~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~----~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~ 322 (388)
T PF04912_consen 247 ALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAK----EDAEQESKIDELYEILPRWDPYAPSLPSLVERLK 322 (388)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccc----ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 57778888888844 567777777777777766654443331 12334455566555 6677777
Q ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHH
Q 023459 97 EGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKK 139 (282)
Q Consensus 97 ~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~ 139 (282)
....+...+..+...+..++..+..+...+...+.-+..++..
T Consensus 323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666665555555555555554444444444444
No 283
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.94 E-value=32 Score=26.55 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
+.|.=+..+|.+|+++...|..+.++.+-....++++..+++..-..++..+|-+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788887777777777665554555666667777777777776654
No 284
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.68 E-value=66 Score=30.86 Aligned_cols=26 Identities=8% Similarity=0.320 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
.+++.++.+++.|+.+.+........
T Consensus 109 kqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666666666666666665554443
No 285
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=76.32 E-value=21 Score=35.45 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
++++++.+++.++..+..++..+-..+-++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 80 ELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555556666666666666665555543
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.88 E-value=91 Score=33.25 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=45.9
Q ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HHHHHhhHHHHHHHHHhhhhhchHHHHHHhH
Q 023459 96 SEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVR---ELERNVGLLEVREMEEKSKRVRVEEEMREKL 172 (282)
Q Consensus 96 s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~---~LE~kl~ele~~~~~~~~~~gg~keelrekl 172 (282)
...+....++..+...+....+.+........+.......++..+. .+..++..+ ++.....+.++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~i 243 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPL-----------EGLESTIKKKI 243 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhh-----------hhhhhHHHHHH
Confidence 3344444444445555555555555555555554444444444433 344444444 34444555555
Q ss_pred HHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 173 DEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 173 ~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
..+...+..|+.....+......+..+
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~ 270 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTRE 270 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444433
No 287
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=75.88 E-value=0.87 Score=43.46 Aligned_cols=15 Identities=40% Similarity=1.030 Sum_probs=0.0
Q ss_pred HhhhHhhhhhhcccC
Q 023459 268 VTAAAVVCVCYARCR 282 (282)
Q Consensus 268 ~~~~a~~~~~~~~~~ 282 (282)
+.||+++|+||+|||
T Consensus 160 LIA~iIa~icyrrkR 174 (290)
T PF05454_consen 160 LIAGIIACICYRRKR 174 (290)
T ss_dssp ---------------
T ss_pred HHHHHHHHHhhhhhh
Confidence 448888899999887
No 288
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.82 E-value=28 Score=27.53 Aligned_cols=29 Identities=48% Similarity=0.601 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 023459 98 GDELGAEVAELKRVLGEKGVKLEELEREV 126 (282)
Q Consensus 98 ~~e~reEm~~LkseIee~e~eIeelEkeI 126 (282)
.+++..++..++..+..++.....++.++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445554444444444444443
No 289
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=75.50 E-value=39 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..++..-.+..-.+++.++.+..+.+.+...+..-..-+..|
T Consensus 36 l~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 36 LEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 290
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=74.51 E-value=91 Score=30.64 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=3.2
Q ss_pred cccccc
Q 023459 17 TEDFFD 22 (282)
Q Consensus 17 ~~~W~d 22 (282)
.+.|-.
T Consensus 199 p~~W~~ 204 (384)
T PF03148_consen 199 PESWEE 204 (384)
T ss_pred hHHHHH
Confidence 456644
No 291
>PRK04325 hypothetical protein; Provisional
Probab=74.48 E-value=21 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=15.0
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
|..++..+.-.+.-|+.|...+...++.|..|...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444433333
No 292
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.41 E-value=1.1e+02 Score=31.44 Aligned_cols=91 Identities=11% Similarity=0.220 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh----hhhHHHHHHH
Q 023459 135 ESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK----NSAEKTVKEM 210 (282)
Q Consensus 135 ~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~----~~~e~~~~~~ 210 (282)
.+++.-..|......|=.+=.++++++... .-...++..+.=|++++...+..+.+..+.. ..+..+++.+
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~~-----~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVDE-----QNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433335556665542 2223334455556666666666666554442 5555666666
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 023459 211 DERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 211 e~~I~~l~~e~~e~~~~~~~ 230 (282)
...=..+..+...+-++++|
T Consensus 178 ~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 178 QQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 65556666666666666655
No 293
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.28 E-value=18 Score=26.96 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+..|...+.-.+..|++++.-+..-...|..++..+..|..++..+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555555555554
No 294
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=73.91 E-value=9.5 Score=30.00 Aligned_cols=34 Identities=32% Similarity=0.236 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
+-..+.++-.+|+-+|.++..++..+.+|..++.
T Consensus 52 lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 52 LPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777888888888888888888877664
No 295
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.73 E-value=73 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...++.+..+...+...+..+..+++.|+.....++..+..+++.+..+
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555
No 296
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=73.68 E-value=30 Score=26.48 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEEAEKVIA 229 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e~~~~~~ 229 (282)
....++.+.++++.|+=++--|...+...-... ...-++.-++.-.+..++.++.+..+.+.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999888554442 33334444444444444444444444443
No 297
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.06 E-value=26 Score=32.29 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
++.+.+.+..+...++..++....++... -...+.|+.+.+.+..+.+.|-++...|..++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~-----------~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKA-----------QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444 224455566666666666666666666655544
No 298
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=72.98 E-value=61 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+-.-|...+..++.+..++..|...++..++++..|..-|...
T Consensus 45 ~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 45 IAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666666665555
No 299
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.81 E-value=99 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=26.4
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEED 66 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~ 66 (282)
.-+||-|.||.+ .-+.+++-...|+ .+...+..+.+++..++..+.+
T Consensus 228 ~gcw~ay~Qnk~--akehv~km~kdle-~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 228 GGCWFAYRQNKK--AKEHVNKMMKDLE-GLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhhhhhhhhhhH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999987 3333333322222 2334455556666666666644
No 300
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.75 E-value=15 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.473 Sum_probs=22.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+...+...+..+..++.++..+|.....++..+..+..+|..+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555555555555
No 301
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=72.39 E-value=19 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=24.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
+-.+|++++.+++.....+...+.+|..-+.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eL 33 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRREL 33 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCC
Confidence 3467888999999999999988888877643
No 302
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.32 E-value=13 Score=30.45 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.|......|..+++.+...+..+...+.++..-..++.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666665444444
No 303
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.16 E-value=32 Score=25.27 Aligned_cols=64 Identities=28% Similarity=0.453 Sum_probs=36.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhH
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDL 189 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L 189 (282)
+.+++..|.+++..+++.|..++.+|..-.= + ..-..-.-+.-+.++.+...++..|...+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F--~--~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENF--V--EKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTH--H--HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888888888888888775410 0 00001122444556666666666666555544
No 304
>PRK02119 hypothetical protein; Provisional
Probab=71.81 E-value=26 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
++..+.-.+.-|+.|...+....+.|..|.
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 305
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.29 E-value=32 Score=31.52 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSEK--NSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~--~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
++.-.+..+.+..++.++..++.|..-+..-++-. ...+.++...+.+|..++.+++.+...
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666667777777777777766665333221 444455555555555555555544443
No 306
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.27 E-value=87 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDG 238 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~ 238 (282)
..+..++++. .++.+|..+..=|.+|++....+
T Consensus 176 eR~t~~EKnk-~lq~QL~~L~~EL~~~kde~k~T 208 (246)
T PF00769_consen 176 ERVTYAEKNK-RLQEQLKELKSELEQLKDEEKQT 208 (246)
T ss_dssp C---HHHH-H-HHHHHHHHHHHHHHTTB-CCG--
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHhhhhccc
Confidence 3444444444 45556666666667777654433
No 307
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.08 E-value=71 Score=30.77 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHH
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEK 133 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~ 133 (282)
|+..+..+..-|-..|-..-.++.+-..+-=.++-+++.+++++..+..+..+.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444455555555555555444444444443
No 308
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=70.98 E-value=82 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
.+.++..+...|...+...=..+..+..+|..+..
T Consensus 32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 56666677777777777777777777777766653
No 309
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.92 E-value=1.6e+02 Score=31.97 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
..+|+..++.-.+.+....++...+...++-+.+......
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~ 132 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSL 132 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHH
Confidence 3555666666666666666666666666665554444433
No 310
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.91 E-value=16 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|+.++..++..++.++.++..+...|+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555
No 311
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.71 E-value=46 Score=25.13 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 129 LKKEKVESEKKVRELERNVGLLEV--REMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 129 LE~e~~~~ek~i~~LE~kl~ele~--~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
|+..+..+...+..+.++++..+. |.+ -.-.+....++..+=.++.+|+.+++.|..++..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L------~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRL------RRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555431 111 22334445556666666777777777777665543
No 312
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.69 E-value=79 Score=32.07 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKV 227 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~ 227 (282)
-+-+..+++++..+.--+.+++.+.+.
T Consensus 242 ~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 242 IEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 344567778887777777777777664
No 313
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=66 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+++..++.|+-+++.++++.+.++.++.++
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 314
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.47 E-value=1e+02 Score=29.58 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
..|.+++..++.|.++...-+=+|..||.-|...-.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKq 53 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQ 53 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457777777788888888777888888877777743
No 315
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.40 E-value=25 Score=26.27 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
.+.+..++..++.....+..++......+..++.+.++|..++.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555544
No 316
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.32 E-value=1.7e+02 Score=31.55 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH----------HHHhhhhhhHHHHHHHHhhhHHHHHHHH
Q 023459 68 RILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELK----------RVLGEKGVKLEELEREVDGLKKEKVESE 137 (282)
Q Consensus 68 ~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lk----------seIee~e~eIeelEkeIe~LE~e~~~~e 137 (282)
+.|-.+...+..|..+++..+.+|...++-++.++.-+...- .+...+.+.+..++++-+.|..-..-+.
T Consensus 190 ~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLq 269 (739)
T PF07111_consen 190 KELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQ 269 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678888999999999988888777666555553322 2334444445555555555555444444
Q ss_pred HHHHHHHHHhhHHHHHHHH-----------------------HhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 138 KKVRELERNVGLLEVREME-----------------------EKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 138 k~i~~LE~kl~ele~~~~~-----------------------~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
-++..|.--|.=.| +|+- =|.|=+.+-=+|+.+--+....+.+|+.++..|...+.
T Consensus 270 VRvqSLt~IL~LQE-eEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~ 348 (739)
T PF07111_consen 270 VRVQSLTDILTLQE-EELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVA 348 (739)
T ss_pred HHHHHHHHHHHHHH-HHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44444433332221 0110 02222333344555555556666666667766666666
Q ss_pred cchhhh
Q 023459 195 NCKSEK 200 (282)
Q Consensus 195 ~~k~e~ 200 (282)
.-..+.
T Consensus 349 sq~qEq 354 (739)
T PF07111_consen 349 SQQQEQ 354 (739)
T ss_pred HHHHHH
Confidence 554443
No 317
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.32 E-value=29 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHhHHHhhc
Q 023459 176 DREISGFKKKVDDLESELG 194 (282)
Q Consensus 176 e~ei~~Lk~~~e~L~~~l~ 194 (282)
.+.|..|+..+..|...+.
T Consensus 31 q~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333
No 318
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.27 E-value=44 Score=28.91 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=5.7
Q ss_pred HHHHHhHHHHHHHHH
Q 023459 166 EEMREKLDEKDREIS 180 (282)
Q Consensus 166 eelrekl~eke~ei~ 180 (282)
++|..++..++..+.
T Consensus 54 eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 54 EELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334433333333
No 319
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.24 E-value=1.4e+02 Score=30.46 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=28.9
Q ss_pred hhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh
Q 023459 159 SKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 159 ~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~ 200 (282)
.|+--+.+.||+=..-.+++|..|+.+.-.-+..+.++...+
T Consensus 144 ~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 144 DKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 444556777777777777788877777766666666665444
No 320
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.03 E-value=28 Score=30.15 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 023459 207 VKEMDERILLWQK 219 (282)
Q Consensus 207 ~~~~e~~I~~l~~ 219 (282)
+..++..|..|++
T Consensus 118 ~~Gldeqi~~lke 130 (155)
T PF06810_consen 118 LKGLDEQIKALKE 130 (155)
T ss_pred cccHHHHHHHHHh
Confidence 4555555554443
No 321
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.56 E-value=58 Score=25.88 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=8.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH
Q 023459 125 EVDGLKKEKVESEKKVRELERN 146 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~k 146 (282)
.+..|+.-...++.-.+.||.+
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 322
>PLN02678 seryl-tRNA synthetase
Probab=68.15 E-value=35 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.|++++..++..+..+++++..+-..+=++
T Consensus 82 ~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 82 ELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555556666666666666665555543
No 323
>PRK02793 phi X174 lysis protein; Provisional
Probab=67.98 E-value=37 Score=25.73 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
|+..+.-.+..|+++++-+..-...|..+..+++.|-.++.
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333344443333333
No 324
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.83 E-value=97 Score=28.16 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKL 56 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~l 56 (282)
...+|+++++.|+.++..+.......
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999888887664
No 325
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=67.80 E-value=1.2e+02 Score=29.12 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=12.5
Q ss_pred HHHHHhhhhhhHHHHHHHHh
Q 023459 108 LKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe 127 (282)
++..++..+..++++..+|.
T Consensus 182 lK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 182 LKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 56666666666666666654
No 326
>PRK04325 hypothetical protein; Provisional
Probab=67.67 E-value=32 Score=26.23 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+..|+..+.-.+..|++++.-+..-...|..+..+++.|-.++..+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444433
No 327
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.63 E-value=1.5e+02 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
++..|+.+++.++..-..+.++..-+.++-.
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ 44 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESR 44 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444433333
No 328
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.44 E-value=1.2e+02 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
+++.++++++.+++.++..+...|..++.+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 329
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.35 E-value=1.2e+02 Score=29.25 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=65.8
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLES 191 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~ 191 (282)
|-.+.+.++..+.+-.++......++-.+..+++.+.-+-+=-..-+++-|.-+..|-.-+.+..+++-+|...++.|..
T Consensus 32 iriL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~d 111 (389)
T KOG4687|consen 32 IRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLD 111 (389)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence 34456666677777777777777777777777777765533212245566888899999999999999999999999999
Q ss_pred hhccchhh
Q 023459 192 ELGNCKSE 199 (282)
Q Consensus 192 ~l~~~k~e 199 (282)
++.+++-.
T Consensus 112 q~adLhgD 119 (389)
T KOG4687|consen 112 QKADLHGD 119 (389)
T ss_pred HHHHHhch
Confidence 99887655
No 330
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=67.33 E-value=56 Score=25.21 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=19.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
..+.|...++.++.+|..|+.....+...+.+++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655555555443
No 331
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.33 E-value=60 Score=33.21 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++-++-|-....+.+.++..+..+=+.|.++.+.+.++-..+.++|..-
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555444
No 332
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.23 E-value=1.2e+02 Score=29.18 Aligned_cols=120 Identities=12% Similarity=0.217 Sum_probs=54.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
|+..+.....-|.+..+.|+.++.++..++..|..+...+..-..-+. |.. -.--..+.+.-+.+.++...+.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~------~~~-~n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITEN------GYI-INHLMSQADATRKLAEATRELA 144 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc------hHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666666666666555544333311000 001 1111223333444444444444
Q ss_pred hHHHhhccchhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcc
Q 023459 188 DLESELGNCKSEKNSAEKTVKEMDERIL-LWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 188 ~L~~~l~~~k~e~~~~e~~~~~~e~~I~-~l~~e~~e~~~~~~~~~~~ 234 (282)
.....+....+.-...+..+..+..... -++++.-+..+++.+|...
T Consensus 145 ~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~ 192 (301)
T PF06120_consen 145 VAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGM 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443443333322333334444333333 3334456777777777763
No 333
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.06 E-value=57 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.|......|..+++.+...+..+...|..++.-..+|.
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666654444443
No 334
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=67.02 E-value=3.8 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=15.1
Q ss_pred ccccchhhHHHHhhhHhhhhh--hccc
Q 023459 257 SRLNWQLPLAAVTAAAVVCVC--YARC 281 (282)
Q Consensus 257 ~~~~~~~~~~~~~~~a~~~~~--~~~~ 281 (282)
-+..+..||++.+++..+++| |+|+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEecc
Confidence 366678898886554444444 5544
No 335
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=66.75 E-value=82 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHH
Q 023459 83 EVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEEL 122 (282)
Q Consensus 83 e~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeel 122 (282)
++++++.|+..+...+..+..++..+...|......+...
T Consensus 78 kvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A 117 (136)
T PF11570_consen 78 KVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQA 117 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 336
>PF13514 AAA_27: AAA domain
Probab=66.36 E-value=2.2e+02 Score=31.79 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhh---hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 103 AEVAELKRVLGEK---GVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 103 eEm~~LkseIee~---e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..|...+... ...+..+...+..++..+..+...+..++..+..+
T Consensus 784 ~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 33444555666666666666666666666666555
No 337
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=66.28 E-value=1.3e+02 Score=29.26 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLT 57 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le 57 (282)
|..++..+..++.....++....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 338
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=66.13 E-value=1e+02 Score=30.25 Aligned_cols=74 Identities=31% Similarity=0.364 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
.+.+|......|..+...+...+..+..+++.+-..+..+| .+| +.+|..
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E-----------------~~L-------------~~KF~~ 187 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHE-----------------EDL-------------YAKFVL 187 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH-------------HHHHHH
Confidence 45556666666666666666666666666666665544444 233 344677
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKV 134 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~ 134 (282)
.+.+++..|.++..-+..++..-.
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhcccc
Confidence 778888888887777777665433
No 339
>PRK11519 tyrosine kinase; Provisional
Probab=65.81 E-value=1.9e+02 Score=30.76 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 023459 214 ILLWQKEIEEA 224 (282)
Q Consensus 214 I~~l~~e~~e~ 224 (282)
-..+.++..++
T Consensus 386 Y~~lL~r~~e~ 396 (719)
T PRK11519 386 YMQLLNKQQEL 396 (719)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 340
>PLN02320 seryl-tRNA synthetase
Probab=65.65 E-value=34 Score=35.20 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
+++++..++..+..+..++..+-..+=+
T Consensus 142 lk~~i~~le~~~~~~~~~l~~~~l~iPN 169 (502)
T PLN02320 142 LKEGLVTLEEDLVKLTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455555555555555555544443
No 341
>PRK02119 hypothetical protein; Provisional
Probab=65.60 E-value=32 Score=26.15 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=5.7
Q ss_pred HHhhhHHHHHHHHHHH
Q 023459 125 EVDGLKKEKVESEKKV 140 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i 140 (282)
.|..||.+++-.+..|
T Consensus 10 Ri~~LE~rla~QE~ti 25 (73)
T PRK02119 10 RIAELEMKIAFQENLL 25 (73)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 342
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=65.55 E-value=3 Score=38.61 Aligned_cols=21 Identities=33% Similarity=0.159 Sum_probs=16.6
Q ss_pred ccchhhHHHHhhhHhhhhhhc
Q 023459 259 LNWQLPLAAVTAAAVVCVCYA 279 (282)
Q Consensus 259 ~~~~~~~~~~~~~a~~~~~~~ 279 (282)
+.+.+|+-++.||+|+|+||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~ 240 (244)
T PTZ00451 220 FGTVAAAAVGVAAAVGYVGYR 240 (244)
T ss_pred HHHCChHHHHHHHHHHHHhhh
Confidence 334677777889999999997
No 343
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.51 E-value=51 Score=24.16 Aligned_cols=37 Identities=16% Similarity=0.458 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
||..|...+..|..++..+...+..+...+.....+-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777776665544
No 344
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=65.46 E-value=78 Score=26.25 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+.+..-+.+|.+..+....+...+..++..+..+..-..-+..+|-..-..+..+...++.+..=..-|
T Consensus 51 ~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LL 119 (132)
T PF10392_consen 51 SQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLL 119 (132)
T ss_pred HHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555667888888877777788888888888888888888888888888888877777776654443
No 345
>PRK00846 hypothetical protein; Provisional
Probab=65.18 E-value=44 Score=25.93 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..|+..+.-.+..|++++.-+......+..+..+++.|-.++.+.
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444443
No 346
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.09 E-value=51 Score=26.11 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
.+|+..+..+..+...++.+...+-.-.-.+ ....+++.+...+...+...++-...|
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~----e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSP----EARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCCh----HHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3555566666666666666665554322221 222333444444444444444444433
No 347
>PRK04406 hypothetical protein; Provisional
Probab=64.94 E-value=43 Score=25.65 Aligned_cols=43 Identities=9% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+...|..++..+.-.+.-|+.|...+...++.|..|.+.+..+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 348
>PF14282 FlxA: FlxA-like protein
Probab=64.47 E-value=29 Score=28.05 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 023459 131 KEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 131 ~e~~~~ek~i~~LE~kl~el 150 (282)
..|+.+.++|..|..+|..+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544
No 349
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.39 E-value=34 Score=32.85 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhHH
Q 023459 137 EKKVRELERNVGLL 150 (282)
Q Consensus 137 ek~i~~LE~kl~el 150 (282)
+-.|++|..+|.+-
T Consensus 67 EV~iRHLkakLkes 80 (305)
T PF15290_consen 67 EVCIRHLKAKLKES 80 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555544
No 350
>PRK14011 prefoldin subunit alpha; Provisional
Probab=64.23 E-value=94 Score=26.71 Aligned_cols=41 Identities=5% Similarity=0.073 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
++..+--.+..|.+++..+...+..+...+.++..-..+|+
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666654443333
No 351
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.01 E-value=61 Score=24.46 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 023459 42 LELENKEMKGTIKKLTIEIEGSEED 66 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~lr~~ 66 (282)
|++++.++...++.++.++..+...
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~ 27 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIE 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655533
No 352
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=63.80 E-value=68 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 206 TVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 206 ~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
....+...+..+...+..+..++.-...
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455444444443
No 353
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.76 E-value=1e+02 Score=26.99 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=60.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHH-------
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDRE------- 178 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~e------- 178 (282)
..+..-.++.=.+.+..-.+...+..++..+...+...-.....|+. ..-..+..+.+..+.
T Consensus 9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~-----------~er~aR~rL~eVS~~f~~ysE~ 77 (159)
T PF05384_consen 9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK-----------RERQARQRLAEVSRNFDRYSEE 77 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhcccCHH
Confidence 33444444455555555555666666666666666666665555543 222333444443333
Q ss_pred -HHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 179 -ISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 179 -i~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
|...=++-..+...|.-++..+.++..+.+.++.++..+..=+..++.+++.
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sq 130 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555666666666666666666666655554443
No 354
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.53 E-value=2.3e+02 Score=30.92 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=12.2
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHH
Q 023459 23 PDQDGSNNKVTELTKKVESLELENK 47 (282)
Q Consensus 23 v~~~e~~~Ki~kL~~eI~~LE~Ei~ 47 (282)
+-+++. +...|..+++-++.++.
T Consensus 107 lrq~ee--kn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 107 LRQNEE--KNRSLQERLELAEPKLQ 129 (916)
T ss_pred hchhHH--hhhhhhHHHHHhhHhhH
Confidence 344444 55555555555555444
No 355
>PTZ00464 SNF-7-like protein; Provisional
Probab=63.52 E-value=1.2e+02 Score=27.67 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE-----DKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~-----~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
.+..|..++..|+.++..+..++......+-..+. .+..+-.+-+|.-.++..+.++..
T Consensus 19 ~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~ 82 (211)
T PTZ00464 19 ASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQ 82 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666555555555555444433322 122222233455555555555444
No 356
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=63.36 E-value=47 Score=33.15 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=21.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.++++++.+++.++..++.++..+-..+-++
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456677777777777777777777666654
No 357
>PRK11020 hypothetical protein; Provisional
Probab=63.30 E-value=63 Score=27.04 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchH---HHHHHhHHHHHHHHHHHHHhH-HhHHHhhccchhhh
Q 023459 128 GLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVE---EEMREKLDEKDREISGFKKKV-DDLESELGNCKSEK 200 (282)
Q Consensus 128 ~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~k---eelrekl~eke~ei~~Lk~~~-e~L~~~l~~~k~e~ 200 (282)
+++.+++.+..++..+..++...+. -|+. .+...+++.+..+|..|+... ..|..+-+++.+-|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~---------rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lp 69 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASL---------RGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLP 69 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3566777777888888888877743 2221 234444555555555555332 23444444444444
No 358
>PF14282 FlxA: FlxA-like protein
Probab=63.23 E-value=28 Score=28.14 Aligned_cols=55 Identities=9% Similarity=0.337 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhc-cchhh--h-hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 170 EKLDEKDREISGFKKKVDDLESELG-NCKSE--K-NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~-~~k~e--~-~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
..+..+.+.|..|..++..|...-. +-+.. . ..++..|..++..|..++.+..+.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444545555555555544444211 11100 1 445556666666666665555444
No 359
>PRK00736 hypothetical protein; Provisional
Probab=63.12 E-value=53 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
..+.-.+.-|+.|...+...++.|..|.+++.
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 360
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=62.64 E-value=84 Score=30.63 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhh
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGV 117 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~ 117 (282)
+.+.-..++.++.++-...+++..++..++.++++..+
T Consensus 292 ~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~ 329 (384)
T KOG0972|consen 292 LREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGA 329 (384)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33555566667777777766666667777766665443
No 361
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=62.42 E-value=43 Score=28.28 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 87 LQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 87 ~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+|++|.........+.-|.+++++.|..++.+....+.-...|...|+-++.-++.+..+.
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544433333444444444444444444444444444444444444444433333333
No 362
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.41 E-value=1.6e+02 Score=28.64 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
|.+.+..+..+.....+++..|-.++.+++..
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r 249 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQR 249 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666555544
No 363
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=61.75 E-value=1.4e+02 Score=27.75 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
.++..-...++..|+.+++.++.+|.+++.|+..-+.+..|++. --+..|.+++.=+.+-+..|+.
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~---ieEkk~~eei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE---IEEKKMKEEIEFLKETNRQLKA 249 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777777666543332221 1334444444444444444433
No 364
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=61.63 E-value=70 Score=28.17 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKE 48 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~e 48 (282)
+|-.+...|-.+-...+.
T Consensus 74 ~ii~~~~~I~~Y~~~f~s 91 (184)
T PF05791_consen 74 QIIDLNQDIINYNTTFQS 91 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666555544444
No 365
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.95 E-value=2.5e+02 Score=30.45 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..-|+.+.....+++.....++....+.++....|+.+...+
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555555555554
No 366
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.81 E-value=74 Score=24.36 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+.+.+..|..|.++-=.+.-+|-.|+.++...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 34667778888888888888888888888855
No 367
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.52 E-value=1.8e+02 Score=28.65 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=54.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch-----------------------hhh-hhhHHHHHHHHHHHHHHHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCK-----------------------SEK-NSAEKTVKEMDERILLWQK 219 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k-----------------------~e~-~~~e~~~~~~e~~I~~l~~ 219 (282)
.+.+|.-++.+...+|..+...+..|+.-+.++. |.+ ..+-.++..+...|..|+.
T Consensus 259 ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~ 338 (384)
T PF03148_consen 259 AKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQE 338 (384)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666665555532 223 5555889999999999999
Q ss_pred HHHHHHHHHhhhhcccccc
Q 023459 220 EIEEAEKVIAGLKDKTLDG 238 (282)
Q Consensus 220 e~~e~~~~~~~~~~~~~~~ 238 (282)
.+.+++....+|.......
T Consensus 339 ~L~~a~~~l~~L~~~~~~L 357 (384)
T PF03148_consen 339 KLDEAEASLQKLERTRLRL 357 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765443
No 368
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.50 E-value=86 Score=28.92 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++++.++.+...++.++++...+.+....+...+.++...+......+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3444444444555555555555555555555555555555544444444
No 369
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.49 E-value=1.7e+02 Score=28.56 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhHH
Q 023459 166 EEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e 187 (282)
..+..++.+....+..++....
T Consensus 230 ~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 230 ETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666665
No 370
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=60.09 E-value=2.8e+02 Score=30.90 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 023459 205 KTVKEMDERILLWQ 218 (282)
Q Consensus 205 ~~~~~~e~~I~~l~ 218 (282)
.++..+...+..+.
T Consensus 860 ~~~~~~~~~~~~~~ 873 (1047)
T PRK10246 860 QQQQALMQQIAQAT 873 (1047)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 371
>PRK11281 hypothetical protein; Provisional
Probab=60.02 E-value=3e+02 Score=31.23 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------cccchhHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSM--------SEGDELGA 103 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~--------s~~~e~re 103 (282)
+..|+..++.+++...+....+......+-.+...- ++...|=..-.+++..+...+..-. +....+..
T Consensus 123 l~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~P---ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~a 199 (1113)
T PRK11281 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP---ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA 199 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH
Confidence 344666666666666666666555555554444222 1111221122223333333232211 12334556
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
|...+...+.-.+.........++-+......+..++..++..+..+
T Consensus 200 e~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~l 246 (1113)
T PRK11281 200 EQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLL 246 (1113)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666666666666666666677777777666666
No 372
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.44 E-value=3.3 Score=33.67 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=27.1
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 22 DPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 22 dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.|+..+=|.=|..+...+..|..++..+..++..+...+..++.....|.
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 33333334467778888888888888888888888877777764443333
No 373
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=59.01 E-value=43 Score=31.48 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
..+|..|.++-..+...|..++++|.
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~Va 204 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVA 204 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 374
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=58.89 E-value=1.6e+02 Score=27.64 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
...|..+....+..+..|.++++.-+
T Consensus 231 ~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 231 EQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544444333
No 375
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.24 E-value=1.4e+02 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 29 NNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 29 ~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
|..+..|..+|..|.....++...+..++++|-.|.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888887777777777777777776655
No 376
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.17 E-value=1.9e+02 Score=28.18 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
..|...++.|.++...++.++.........|..+.++|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555554444433
No 377
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.87 E-value=66 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 169 REKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
...+.+-...|+.+..++..|-.++.+++
T Consensus 28 n~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 28 NDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555555554443
No 378
>PRK10698 phage shock protein PspA; Provisional
Probab=57.75 E-value=1.5e+02 Score=26.98 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHhhhhcccc-hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023459 89 HDLVTSMSEGD-ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERN 146 (282)
Q Consensus 89 ~dl~~~~s~~~-e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~k 146 (282)
++++++..-+. -++--+..++..+...+..+..+...-..++.....++..+.+.+.+
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 33333333444444444444444444444444444444444444443
No 379
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.73 E-value=92 Score=24.52 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
++..++..+......+...+...+.....|+.--.++-..|...-..|
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555554444433
No 380
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=57.64 E-value=1.4e+02 Score=26.70 Aligned_cols=121 Identities=25% Similarity=0.305 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------hHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE----------------------DKRILESVAARAEELEIEVSRLQ 88 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~----------------------~~~~le~i~~r~~~L~ee~~~~q 88 (282)
-+..|..+|-.|+-++..+...+..+..+.-.+.+ =...|..-..|=..|+.++.-|.
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMR 84 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMR 84 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666766666666666666554422221 00112223366666777766666
Q ss_pred HHHhhhhcccchhHHHHHHHH-------HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 89 HDLVTSMSEGDELGAEVAELK-------RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 89 ~dl~~~~s~~~e~reEm~~Lk-------seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
.=+.....+...+-+.-..+. +.+-..-..++.++.+--.|-......+.+|.+||.+|.+.|
T Consensus 85 kmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 85 KMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443333333222222221 223334455666677777777777777888888888887774
No 381
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.40 E-value=1.5e+02 Score=32.12 Aligned_cols=19 Identities=0% Similarity=0.121 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTI 53 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI 53 (282)
+...+.++...+..+..=+
T Consensus 384 i~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred hhhchhHHHHHHHHHHHHH
Confidence 3344555555554444333
No 382
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.76 E-value=2.3e+02 Score=28.81 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHH
Q 023459 76 RAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEK 138 (282)
Q Consensus 76 r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek 138 (282)
+...+++++..+.+.+.+....+..+.++...++.....+.......+.++..|+.+-..+..
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666676666666666777777777777777777777777777777666554443
No 383
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.49 E-value=1.5e+02 Score=30.17 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 100 ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 100 e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
.+..+|......-+.+....--.+++|+.|+++..+.+.+|.+|.+
T Consensus 138 ~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 138 DLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred hhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3445555555555666666666667777777777777777777763
No 384
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=1.2e+02 Score=25.85 Aligned_cols=33 Identities=15% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
.+.|.+....++++|..|..+.+.+...+.++|
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 385
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.93 E-value=2.4e+02 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 42 LELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
....|+.+.+.+..|..+=- .-...|+.+..|-.+|..|+-++..
T Consensus 353 ~r~ri~~i~e~v~eLqk~~a---d~~~KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 353 HRIRINAIGERVTELQKHHA---DAVAKIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555552111 1122333444566666676666553
No 386
>PRK11519 tyrosine kinase; Provisional
Probab=55.87 E-value=2.8e+02 Score=29.49 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 023459 71 ESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 71 e~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
+-|..|-..|+.++...+..+..
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 387
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.79 E-value=1.5e+02 Score=26.34 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
......|..++.++..|+..+..+..+...++++..+.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554443
No 388
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=55.68 E-value=1.9e+02 Score=28.69 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHH
Q 023459 129 LKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 129 LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+.++..++.++..|++.|..|
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554
No 389
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.12 E-value=1.6e+02 Score=26.48 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHhhhhcccc-hhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 89 HDLVTSMSEGD-ELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 89 ~dl~~~~s~~~-e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+++++...-+. -++.-+..+...+...+..+..+...-..++..+......+.+.+.+-
T Consensus 16 n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 16 NALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 333333444444444444444444444445555555555555544443
No 390
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.88 E-value=1.8e+02 Score=31.43 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023459 34 ELTKKVESLELENKEMKG 51 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elke 51 (282)
.+...+.++...+..+..
T Consensus 378 si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 378 SIEQNLSTFSGHMKNISA 395 (771)
T ss_pred HHhhhhhHHHHHHHHHHH
Confidence 344555555555554433
No 391
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=54.85 E-value=82 Score=27.66 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDG 238 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~ 238 (282)
+++++..++..|+.|...++-+..++..+.+.. +++.-.+..+..+|..++.. .+-++.++++...-|
T Consensus 77 ~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i---~emv~~d~~~l~g~~ 145 (157)
T COG3352 77 IKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMI---VEMVIKDLRELYGVP 145 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhccchhhcCCC
Confidence 344555555666666666666666666666665 55555677777777776664 445566666654444
No 392
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=54.15 E-value=2e+02 Score=27.29 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
.-..|..|+...-.+...+..+..-+..+-.. .+ -..-++.+..+...-..+.++-+..+.+...+..+.
T Consensus 178 ~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~----~~--~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 178 ELERLGELRRSLVYLRRALAPLRDVLLRLARR----PL--DWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----Cc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444110 00 012344444455555555555555555544444433
No 393
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.68 E-value=1.4e+02 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 202 SAEKTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 202 ~~e~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
+...-.+.++.+|...+..+.+.++
T Consensus 97 ~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 97 KYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666555
No 394
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.66 E-value=2.2e+02 Score=27.63 Aligned_cols=56 Identities=30% Similarity=0.427 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
.+..|+.+.+.+.++..+-.+.|..+-..++..+.+++. .+.|++-|+-.++++..
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~---~a~~aETLeln~ealer 65 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDG---LAARAETLELNLEALER 65 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999888877754 45888888888887775
No 395
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=53.62 E-value=90 Score=23.13 Aligned_cols=74 Identities=12% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHH
Q 023459 139 KVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLW 217 (282)
Q Consensus 139 ~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l 217 (282)
-+.++..++..+-. . .| ++-+..+.+.+..+.+..+-+..+..++..+-... .....++....+.+..+
T Consensus 4 l~~~i~~~l~~~~~--~------~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 4 LTAEIKSKLERIKN--L------SG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHGGG--S-------C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--c------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666621 1 22 67778888888888889999999998888873222 66667777777777766
Q ss_pred HHHHH
Q 023459 218 QKEIE 222 (282)
Q Consensus 218 ~~e~~ 222 (282)
+.+++
T Consensus 74 k~~l~ 78 (79)
T PF05008_consen 74 KKELK 78 (79)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 396
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.22 E-value=3.6e+02 Score=29.99 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=51.1
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 162 VRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK----NSAEKTVKEMDERILLWQKEIEEAEKVIA 229 (282)
Q Consensus 162 gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~----~~~e~~~~~~e~~I~~l~~e~~e~~~~~~ 229 (282)
-..+++.......+..++..++...+.|..++....... ..+..+++.+++.|..++..+....++|.
T Consensus 501 ~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~ 572 (913)
T KOG0244|consen 501 SKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIK 572 (913)
T ss_pred hHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 446677777777777788888888888888887765522 66778888888888888887777777654
No 397
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.84 E-value=67 Score=29.90 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=30.0
Q ss_pred ccccccCCCchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 19 DFFDPDQDGSNNKVTELTKKVE-------SLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 19 ~W~dv~~~e~~~Ki~kL~~eI~-------~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.|-|+......+++..|++.+. .|..++..+..+|.+|...|+...-+...+.
T Consensus 29 ~v~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 29 PISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred cHHHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455543333347777766655 4555666666666666666666665544444
No 398
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=52.77 E-value=2.1e+02 Score=27.23 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 023459 171 KLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTL 236 (282)
Q Consensus 171 kl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~ 236 (282)
+....++.+...+.+.+.+..++...+.+-.++..++..+...+.++..+--.+.+.|..++-++.
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333566667778888888888888888888877776553
No 399
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.67 E-value=2.2e+02 Score=27.27 Aligned_cols=25 Identities=0% Similarity=-0.041 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
..+++++...+.....+...+.++.
T Consensus 281 ~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 281 QRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 400
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.67 E-value=2.2e+02 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
-|+.|-.+...++.++..+..+=+.+..+-++|+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666555555555555
No 401
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=52.09 E-value=82 Score=27.64 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMS 96 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s 96 (282)
.|.....+.+..+.++...+..+......+..+++.. ++|..+=..|....+.+-.+|+..++
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eel---erLe~~iKdl~~lye~Vs~d~Npf~s 107 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEEL---ERLEENIKDLVSLYELVSRDFNPFMS 107 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHh
Confidence 4555555666666655544444444444444444222 33333333333444444445554433
No 402
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.00 E-value=1.1e+02 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 116 GVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 116 e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
.+.+..+.-.|.+++.+++.+..+++.+...++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433333
No 403
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=51.83 E-value=99 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
-.+.+.|..|+..+..++..+.++...+.+|.++
T Consensus 54 I~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~~ 87 (87)
T PF08700_consen 54 IEASDEISSMENDLSELRNLLSELQQSIQSLQET 87 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6777999999999999999999999999888763
No 404
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=51.82 E-value=57 Score=25.84 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
++++..++...+.++...++++..|++++..++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666663
No 405
>PRK00295 hypothetical protein; Provisional
Probab=51.77 E-value=69 Score=23.95 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHHH
Q 023459 129 LKKEKVESEKKVR 141 (282)
Q Consensus 129 LE~e~~~~ek~i~ 141 (282)
||.+++-.+..|.
T Consensus 10 LE~kla~qE~tie 22 (68)
T PRK00295 10 LESRQAFQDDTIQ 22 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 406
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.63 E-value=3.4e+02 Score=29.27 Aligned_cols=188 Identities=22% Similarity=0.275 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++..+..-+..+..+..-+..++..+...+.....+.+.+. +.+.+-....+.+..-+..+..
T Consensus 385 klk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~-----------------~~l~~~tk~reqlk~lV~~~~k 447 (716)
T KOG4593|consen 385 KLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLA-----------------EELPQVTKEREQLKGLVQKVDK 447 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-----------------HHhHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555554444443 3333333333333333333333
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
--...+.-.++.-..|.+-+.....+++.+++|...+...+.-=.-- -.-.+-+++++.+..+++..|...-..|.
T Consensus 448 ~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~q----r~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 448 HSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQ----REESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333555555666666666666666666666555443100000 11224456778888888888887776666
Q ss_pred Hhhcc--c--hhh----h---hhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 023459 191 SELGN--C--KSE----K---NSAE---KTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGV 239 (282)
Q Consensus 191 ~~l~~--~--k~e----~---~~~e---~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~ 239 (282)
..+.. + .-+ + ...+ +........+-.|+.+++.+..-+.+|..--..+-
T Consensus 524 ~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~ 586 (716)
T KOG4593|consen 524 AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFR 586 (716)
T ss_pred HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 33321 1 000 1 1111 23344555667777777777766666655333333
No 407
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.43 E-value=44 Score=24.69 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLT 57 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le 57 (282)
.+..|..+|+.|++||.-++..+....
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766666665555554443
No 408
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.15 E-value=56 Score=33.44 Aligned_cols=6 Identities=33% Similarity=0.097 Sum_probs=2.5
Q ss_pred cccccc
Q 023459 235 TLDGVN 240 (282)
Q Consensus 235 ~~~~~~ 240 (282)
..++.+
T Consensus 131 ~~~~~~ 136 (475)
T PRK13729 131 TGEPVP 136 (475)
T ss_pred CCCCCC
Confidence 334444
No 409
>PRK00736 hypothetical protein; Provisional
Probab=51.08 E-value=72 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
|+..+.-.+..|++++.-+..-...|..+..+++.|-.++
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444443333
No 410
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.00 E-value=1.1e+02 Score=23.54 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..|+..+.-.+..|++++.-+......+..+..+++-|-.|+..+
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444444444433
No 411
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=50.94 E-value=90 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=8.0
Q ss_pred chhhHHHHhhhHhhhhhhcc
Q 023459 261 WQLPLAAVTAAAVVCVCYAR 280 (282)
Q Consensus 261 ~~~~~~~~~~~a~~~~~~~~ 280 (282)
|+...+|+++..++-+..+|
T Consensus 74 ~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 74 WQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444333333
No 412
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.65 E-value=56 Score=34.55 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 38 KVESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 38 eI~~LE~Ei~elkekI~~le~eIe~l 63 (282)
++.+|+.+++++..+|.++..+|+.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEel 119 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEEL 119 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 413
>PRK12704 phosphodiesterase; Provisional
Probab=50.46 E-value=3e+02 Score=28.33 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 023459 75 ARAEELEIEV 84 (282)
Q Consensus 75 ~r~~~L~ee~ 84 (282)
.+..+++.++
T Consensus 68 ~~R~Ele~e~ 77 (520)
T PRK12704 68 KLRNEFEKEL 77 (520)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 414
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.91 E-value=2.7e+02 Score=27.61 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHhHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 023459 182 FKKKVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGT 242 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~ 242 (282)
+......|..++..++..- -..+.+...+++...-.+.=+..+..-...+.....-+++.+
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~ 410 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQEASPIGNA 410 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCce
Confidence 4444455555555444442 445555566666665555555444444444444333344444
No 415
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=49.80 E-value=76 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
..+..++..+.......+.+-.++..|+.
T Consensus 110 ~~i~~L~~~i~~~q~~~~~~i~~L~~f~~ 138 (184)
T PF05791_consen 110 EIIEDLQDQIQKNQDKVQALINELNDFKD 138 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333333333
No 416
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=49.70 E-value=4.1e+02 Score=29.66 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEK 133 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~ 133 (282)
..-+|...++..+.+..+.+.+..+|..+++.|
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666654
No 417
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.30 E-value=3.1e+02 Score=28.07 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.8
Q ss_pred Hhhhhcc
Q 023459 228 IAGLKDK 234 (282)
Q Consensus 228 ~~~~~~~ 234 (282)
+..|+..
T Consensus 414 ~~~l~~~ 420 (582)
T PF09731_consen 414 VDALKSA 420 (582)
T ss_pred HHHHHHH
Confidence 3344443
No 418
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=49.15 E-value=2.7e+02 Score=27.37 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=25.4
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
.+.-|-+|...=--.+...+..++.++..+..+..++....+.|...+.
T Consensus 78 Gd~L~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 78 GDVLFRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred CCeEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433221144555555666666666666666666666655554
No 419
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=48.72 E-value=2.1e+02 Score=26.89 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 023459 36 TKKVESLELEN 46 (282)
Q Consensus 36 ~~eI~~LE~Ei 46 (282)
...+..++.++
T Consensus 87 ~a~l~~~~~~l 97 (331)
T PRK03598 87 KANVSVAQAQL 97 (331)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 420
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.54 E-value=1.2e+02 Score=28.30 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEI 60 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eI 60 (282)
|+.++..+++++...+.-+.+|+..+
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 421
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.32 E-value=1.5e+02 Score=24.33 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
.-..+......+..+...+..++..+.+++..+.+|+.
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444445555555555555555555554
No 422
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.26 E-value=1.8e+02 Score=28.41 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
+......-.+..+++.+-...+-+.+....+++++|...+...+. +...+-...+++++..|...+....
T Consensus 16 Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~----------~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 16 LQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK----------SLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCChhHHHHHHHHHHHHHHHHhhHH
Confidence 444444444455555555555555566666666666665555521 1223344555555555555555554
Q ss_pred hHH
Q 023459 188 DLE 190 (282)
Q Consensus 188 ~L~ 190 (282)
+++
T Consensus 86 DmE 88 (330)
T PF07851_consen 86 DME 88 (330)
T ss_pred HHH
Confidence 444
No 423
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.22 E-value=3.3e+02 Score=28.08 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=6.4
Q ss_pred HHHHHhHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGF 182 (282)
Q Consensus 166 eelrekl~eke~ei~~L 182 (282)
+.+...+..+..++.+|
T Consensus 498 Ekl~~Dyqairqen~~L 514 (521)
T KOG1937|consen 498 EKLHQDYQAIRQENDQL 514 (521)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 424
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.98 E-value=66 Score=23.19 Aligned_cols=33 Identities=42% Similarity=0.616 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|..++..|+.++..+...+..+..++..+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 425
>PF15013 CCSMST1: CCSMST1 family
Probab=47.92 E-value=12 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=14.3
Q ss_pred chhhHHH-HhhhHhhhhhhccc
Q 023459 261 WQLPLAA-VTAAAVVCVCYARC 281 (282)
Q Consensus 261 ~~~~~~~-~~~~a~~~~~~~~~ 281 (282)
||.++|. .++|.++|+||-|-
T Consensus 31 yq~~~is~sl~~fliyFC~lRe 52 (77)
T PF15013_consen 31 YQVYPISLSLAAFLIYFCFLRE 52 (77)
T ss_pred eeeehhHHHHHHHHHHHhhccc
Confidence 4655555 56777888898763
No 426
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=47.78 E-value=16 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=16.9
Q ss_pred cchhhHHHHhhhHhhhhhhcccC
Q 023459 260 NWQLPLAAVTAAAVVCVCYARCR 282 (282)
Q Consensus 260 ~~~~~~~~~~~~a~~~~~~~~~~ 282 (282)
.+..|++||..|.++.-..++|+
T Consensus 13 DLAAP~iagIi~s~iv~w~~~RK 35 (35)
T PF13940_consen 13 DLAAPIIAGIIASLIVGWLRNRK 35 (35)
T ss_pred HhHhHHHHHHHHHHHHHHHHhcC
Confidence 35789999888887766666553
No 427
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=47.17 E-value=6.7e+02 Score=31.32 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKG 116 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e 116 (282)
..+..++.+.+..+.-+......|+.+......|.+ |.......+...+.+..|+.....+.
T Consensus 883 ~kLn~yE~eFnd~ks~V~~t~k~IE~~~KnIdtlK~------------------LN~~In~c~~~kesI~~~~nkk~~Lk 944 (2757)
T TIGR01612 883 DKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKK------------------VDEYIKICENTKESIEKFHNKQNILK 944 (2757)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhHHHHHH------------------HHHHHHHHHhHHHHHHHHHhhhHHHH
Confidence 344555666666666555555566555533333331 12222222233333444444444444
Q ss_pred hhHHHHHHHHh---------------hhHHHHHHHHH-----HHHHHHHHhhHHHHHHHH----HhhhhhchHH-HHHHh
Q 023459 117 VKLEELEREVD---------------GLKKEKVESEK-----KVRELERNVGLLEVREME----EKSKRVRVEE-EMREK 171 (282)
Q Consensus 117 ~eIeelEkeIe---------------~LE~e~~~~ek-----~i~~LE~kl~ele~~~~~----~~~~~gg~ke-elrek 171 (282)
..+......|. .|..++..+++ .|-+|+.+..+| ++ -|+.=|+.++ -+-++
T Consensus 945 ekL~k~I~~I~~~~~Iek~~t~~ll~~L~dkk~~i~~~l~e~sLNdletk~~~L----l~Yf~~~K~nl~~~~e~~~~~q 1020 (2757)
T TIGR01612 945 EILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNEL----IKYFNDLKANLGKNKENMLYHQ 1020 (2757)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHhhHHHH----HHHHHHHHHhcCCCcccchHHH
Confidence 33333333332 33444444443 345566666666 43 3344466766 67788
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhccchhhh-----hhhHHHHHHHHHHHHHHHHHHH
Q 023459 172 LDEKDREISGFKKKVDDLESELGNCKSEK-----NSAEKTVKEMDERILLWQKEIE 222 (282)
Q Consensus 172 l~eke~ei~~Lk~~~e~L~~~l~~~k~e~-----~~~e~~~~~~e~~I~~l~~e~~ 222 (282)
++++++.....+.++..|......+...- ...+.-+..+...|..+.+++.
T Consensus 1021 lde~ek~~~dIk~ki~~lN~Ny~nie~~i~~sI~n~~eei~~~i~k~I~~~~~eI~ 1076 (2757)
T TIGR01612 1021 FDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEIL 1076 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 99999888888888888888877544332 4444555555666666665543
No 428
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.94 E-value=1e+02 Score=27.19 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAAR 76 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r 76 (282)
+|..+++.|..++..+..++..+...+.-+.+|-.+|-.|=.|
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333
No 429
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.78 E-value=68 Score=29.93 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
.+++.+..+||.++......+..++.+|+.++.|--.|= +.++=+|.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY----------EKiRylqS 135 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY----------EKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhh
Confidence 678999999999999999999999999999997766666 77777766
No 430
>PHA02955 hypothetical protein; Provisional
Probab=46.65 E-value=10 Score=34.71 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=14.6
Q ss_pred cccchhhHHHHh--hhHhhhhhhcccC
Q 023459 258 RLNWQLPLAAVT--AAAVVCVCYARCR 282 (282)
Q Consensus 258 ~~~~~~~~~~~~--~~a~~~~~~~~~~ 282 (282)
|+.++|-+++++ +.+++++||.||+
T Consensus 176 g~~~~w~ii~~v~ii~~~v~l~yikR~ 202 (213)
T PHA02955 176 SFSIKWFIIYIVLCLLILIILGYIYRT 202 (213)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 555677766633 3344447787764
No 431
>PRK15396 murein lipoprotein; Provisional
Probab=46.63 E-value=1e+02 Score=23.90 Aligned_cols=34 Identities=12% Similarity=0.428 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
++..|..++..|..++..+...+..+...+....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444444444333
No 432
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.46 E-value=3.4e+02 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~ 200 (282)
|...+-.-.++-....+-++.|..++..++-.+
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444555555555555444
No 433
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=46.42 E-value=3.3e+02 Score=27.58 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKS 159 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~ 159 (282)
|.+-...++..+.--.-+ |+..|..-..-..++.-...+.-.+|...++.|..+++.|..- .
T Consensus 258 l~~tan~lr~Q~~~ve~a----------f~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK----~---- 319 (421)
T KOG2685|consen 258 LRETANDLRTQADAVELA----------FKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDK----E---- 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc----c----
Q ss_pred hhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 160 KRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 160 ~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
|.+ ++.+..-+.-.++-.++-+...-+ ..+-.+|..+...+..|+.++++.+-...+|
T Consensus 320 --~pL------KVAqTRle~Rt~RPnvELCrD~AQ------~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L 377 (421)
T KOG2685|consen 320 --GPL------KVAQTRLENRTYRPNVELCRDQAQ------YRLVDEVHELDDTVAALKEKLDEAEDSLKLL 377 (421)
T ss_pred --ccH------HHHHHHHHHcccCCchHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=45.98 E-value=2.2e+02 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 169 REKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
+..+......+..+.+..+.+...+..+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (292)
T PF01544_consen 191 KEYLRDLLDRIERLLERAESLRERLESLQDL 221 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443
No 435
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.84 E-value=3e+02 Score=30.63 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=30.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh---hhhHHHHHHHHHHHHHHHHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK---NSAEKTVKEMDERILLWQKE 220 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~---~~~e~~~~~~e~~I~~l~~e 220 (282)
+.+.-+.++..++.++..|+...+.-..-+....... ..+...+.-++..-.++...
T Consensus 542 l~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~ 601 (913)
T KOG0244|consen 542 LGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRV 601 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777766555444444332222 34444455444444444433
No 436
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=45.63 E-value=1.3e+02 Score=22.54 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhH
Q 023459 73 VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKL 119 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eI 119 (282)
|..-..+|+.-+..-+.+|+....+...+...+..|...+..+...+
T Consensus 35 i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 35 IEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788888889999977664444444444444444443333
No 437
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.10 E-value=2.4e+02 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHh
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESE 192 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~ 192 (282)
.+..+..++..+|..|+.+...+..+
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333
No 438
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.06 E-value=1.3e+02 Score=30.14 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=7.2
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 023459 123 EREVDGLKKEKVESEKKV 140 (282)
Q Consensus 123 EkeIe~LE~e~~~~ek~i 140 (282)
..+++.|..+...+.+.|
T Consensus 41 ~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 41 QTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 439
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.81 E-value=2.4e+02 Score=25.50 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023459 66 DKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVREL 143 (282)
Q Consensus 66 ~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~L 143 (282)
.+.-+.++|.+---|+.++..+...|.+.+.. +.. ....--.+..++..++.++..+++++..+
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~----------l~~----q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDE----------LEA----QQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH----HHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777888888887766665443 221 11122334556666666666666665544
No 440
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.78 E-value=4.3e+02 Score=28.40 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhHH
Q 023459 138 KKVRELERNVGLL 150 (282)
Q Consensus 138 k~i~~LE~kl~el 150 (282)
.++.++..+|.+|
T Consensus 160 ~kLeelr~~L~~L 172 (660)
T KOG4302|consen 160 EKLEELREHLNEL 172 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777777
No 441
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.65 E-value=1.1e+02 Score=22.90 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEE 65 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~ 65 (282)
.+..+..++..++.++..++.+...+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677778888888888888888888888887664
No 442
>smart00338 BRLZ basic region leucin zipper.
Probab=44.32 E-value=71 Score=23.05 Aligned_cols=33 Identities=42% Similarity=0.618 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|+.++..|..++..+..++..+..++..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444
No 443
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.82 E-value=2.5e+02 Score=25.48 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 023459 203 AEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGVNGT 242 (282)
Q Consensus 203 ~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~~~~ 242 (282)
...++..++..-...+.+++.+..-|-+|+-.+.+|++++
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~~~l 191 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPIPSL 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4444455555555555555555555555555555666554
No 444
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=43.75 E-value=53 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhh
Q 023459 82 IEVSRLQHDLVTS 94 (282)
Q Consensus 82 ee~~~~q~dl~~~ 94 (282)
+++.++-.+|-..
T Consensus 33 e~l~~i~r~f~g~ 45 (99)
T PF13758_consen 33 EDLLRIRRDFGGS 45 (99)
T ss_pred HHHHHHHHhcCcc
Confidence 3444444555443
No 445
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.71 E-value=13 Score=31.21 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=8.7
Q ss_pred hhHhhhhhhcccC
Q 023459 270 AAAVVCVCYARCR 282 (282)
Q Consensus 270 ~~a~~~~~~~~~~ 282 (282)
..++++||++|+|
T Consensus 80 ~Illi~y~irR~~ 92 (122)
T PF01102_consen 80 IILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 4456677877765
No 446
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=43.60 E-value=1.6e+02 Score=23.38 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.++.|..++...+.++..+..++..+++....+.
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766666665553
No 447
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.39 E-value=73 Score=32.66 Aligned_cols=42 Identities=7% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 023459 180 SGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEI 221 (282)
Q Consensus 180 ~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~ 221 (282)
++|+++++.|+.+++.+.......+.+++.++..+..|+.++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333345566667777777777765
No 448
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=43.11 E-value=95 Score=24.19 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=32.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 139 KVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 139 ~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
.|.+|..-|.++.. +-+..+|-+.++-|..++..++.+|..+..
T Consensus 4 ~i~eL~~Dl~El~~--Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKS--LLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHH--HHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666644 667778888888888888888888887765
No 449
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.11 E-value=89 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
.|..++.+++..+..|+.++..|+..+..+.+.
T Consensus 55 ~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 55 QLEKQLKEKEALLESLQAQLKELKTVMESMESE 87 (100)
T ss_dssp HHHHCTTHHCHCCCHCTSSSSHHHHCTTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 455666666666666777777776666665544
No 450
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.88 E-value=4.9e+02 Score=28.60 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGV 239 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~ 239 (282)
++.+.....+.++..++-++++.-.++..++-.-..++++-+-+.-.+++...|+.++.-+..+|+.-....+
T Consensus 484 ~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 484 ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666666655555555444566667777777777888888888888888887665555
No 451
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.70 E-value=4.3e+02 Score=27.80 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 179 ISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKT 235 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~ 235 (282)
...|+.++..+..++...-..- ..+.+-.+.++..|..--+.+. |++..+.+.-.+
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~-Me~a~F~ve~~~ 400 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALA-MEKARFTVELKP 400 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceEEEEecc
Confidence 3344444444444444322222 4555666677766665554432 555555544433
No 452
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.70 E-value=1e+02 Score=30.71 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 127 DGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 127 e~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..|...+..+...+..++..+..+
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444333
No 453
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=42.56 E-value=2.1e+02 Score=24.18 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHH
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDRE 178 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~e 178 (282)
+....-...|...|-.....|+.+..-+=++...-..-.++|+.|+..+.+. ..++.+.+.+++..
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~--------------~~el~~~v~e~e~l 130 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEA--------------EEELQEAVKEAEEL 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 3445555667777777777777777777777777777778888888777666 24556666666666
Q ss_pred HHHHHHhHHh
Q 023459 179 ISGFKKKVDD 188 (282)
Q Consensus 179 i~~Lk~~~e~ 188 (282)
+..+..-+..
T Consensus 131 l~~v~~~i~~ 140 (144)
T PF11221_consen 131 LKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 454
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=42.14 E-value=15 Score=32.34 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.4
Q ss_pred ccccccchhhHHHHhhhHhhhhh
Q 023459 255 EDSRLNWQLPLAAVTAAAVVCVC 277 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~~~a~~~~~ 277 (282)
+...+-+..|||.++++.++|++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~ 178 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGF 178 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhh
Confidence 45688889999986655444433
No 455
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.72 E-value=2.8e+02 Score=25.37 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 30 NKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 30 ~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
|.|.=|+.++-+...+++.--.+|-++...+-.++......+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~ 51 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE 51 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 368999999999999999999999999998888886665555
No 456
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=41.71 E-value=1e+02 Score=27.46 Aligned_cols=44 Identities=30% Similarity=0.383 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 49 MKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLV 92 (282)
Q Consensus 49 lkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~ 92 (282)
++.+|+.+..+|..+..-...+..+-.++..|+.++......|.
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555554444444555555566666655555544
No 457
>PF15456 Uds1: Up-regulated During Septation
Probab=41.70 E-value=2.1e+02 Score=23.96 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEI 60 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eI 60 (282)
.+..|++++..|...+..++.++. ++..+
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 466667776666666666666655 44444
No 458
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.68 E-value=1.3e+02 Score=31.89 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=7.2
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 023459 121 ELEREVDGLKKEKVESEKK 139 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~ 139 (282)
+++.+|+.+..++.++.+.
T Consensus 104 el~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 459
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.41 E-value=1.2e+02 Score=28.21 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhh
Q 023459 137 EKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 137 ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e 199 (282)
+.++..|++.+..- +..--+|-.+|+.+..+|..|+..++.+.-++..++..
T Consensus 39 ~~r~~~le~~~~~~-----------~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 39 EDRVTQLERISNAH-----------SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555566555544 33455777888888888888888888777666654433
No 460
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=41.39 E-value=16 Score=31.93 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred cccchhhHHHHhhhHhhhhhhcccC
Q 023459 258 RLNWQLPLAAVTAAAVVCVCYARCR 282 (282)
Q Consensus 258 ~~~~~~~~~~~~~~a~~~~~~~~~~ 282 (282)
.+=|-.||+++.+++++.+.|+|||
T Consensus 106 ~lLW~~Pv~llllG~~~~~~~~rrr 130 (153)
T COG3088 106 LLLWGLPVVLLLLGGVLLVRRARRR 130 (153)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 4557889999887777777777765
No 461
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.82 E-value=4.4e+02 Score=27.48 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=4.5
Q ss_pred HHHHHHhhh
Q 023459 223 EAEKVIAGL 231 (282)
Q Consensus 223 e~~~~~~~~ 231 (282)
.+.-+|.+.
T Consensus 303 ~~~p~i~~~ 311 (555)
T TIGR03545 303 QAEPLLNKS 311 (555)
T ss_pred HHhHhhccc
Confidence 344455555
No 462
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.33 E-value=2.6e+02 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=19.5
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+......+..+...+..+...+..+...+..++.++.++
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555544
No 463
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=40.14 E-value=2.8e+02 Score=31.68 Aligned_cols=51 Identities=14% Similarity=0.340 Sum_probs=30.4
Q ss_pred HhHHhHHHhhccchhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 023459 184 KKVDDLESELGNCKSEK-----NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLD 237 (282)
Q Consensus 184 ~~~e~L~~~l~~~k~e~-----~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~ 237 (282)
..++.|+.+++.+++.- -+..+++..+++.+- +-+-++..||.++++++.+
T Consensus 1160 SDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~P---KnltdvK~missf~d~lae 1215 (1439)
T PF12252_consen 1160 SDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKP---KNLTDVKSMISSFNDRLAE 1215 (1439)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCC---CchhhHHHHHHHHHhhhhH
Confidence 44566666666666653 444455555553222 1244788888888887654
No 464
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=40.07 E-value=10 Score=32.18 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=3.6
Q ss_pred ccchhhH
Q 023459 259 LNWQLPL 265 (282)
Q Consensus 259 ~~~~~~~ 265 (282)
|++-||+
T Consensus 75 ~~l~~pi 81 (129)
T PF12191_consen 75 FPLLWPI 81 (129)
T ss_dssp SSSS---
T ss_pred cceehhh
Confidence 8899999
No 465
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.42 E-value=1.7e+02 Score=22.23 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVL 112 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseI 112 (282)
......++........+...+..+...+..+. ..+.... . ......+..+..-+..+...|
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~-----------------~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i 61 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQ-----------------EQLSESQ-Q-GVSVAQLRNYQRYISALEQAI 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HT------S-GGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhcc-C-CCCHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
......+..+..++..+...........+.++.
T Consensus 62 ~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 62 QQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.37 E-value=4e+02 Score=26.51 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEK----NSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~----~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
.+..+++.+..+|..+..+...-.+.+-++. .+--.-++.-+--|..|..+++++.--|..|
T Consensus 155 ~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 155 QECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443 2333444555555666666666655444433
No 467
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=39.33 E-value=92 Score=31.52 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
.++..+.+.+..|+..+.-+..++..|..
T Consensus 200 ~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 200 SDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444443
No 468
>PRK12704 phosphodiesterase; Provisional
Probab=39.02 E-value=4.6e+02 Score=27.08 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=3.5
Q ss_pred ccccccccc
Q 023459 235 TLDGVNGTA 243 (282)
Q Consensus 235 ~~~~~~~~~ 243 (282)
+.|.+-|++
T Consensus 235 ~~e~~tgvd 243 (520)
T PRK12704 235 ALETLTGVD 243 (520)
T ss_pred HHHHHhCCe
Confidence 333333443
No 469
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.87 E-value=3.4e+02 Score=25.62 Aligned_cols=114 Identities=6% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
.+......+..+...+..-...+......+...+.+...+..--.|...|-..=..-+.+|.+....++.+...+.....
T Consensus 94 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~ 173 (346)
T PRK10476 94 DLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALL 173 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
.+......+..+......+..-...++.-...|.
T Consensus 174 ~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 174 QAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 470
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.73 E-value=2.7e+02 Score=26.56 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
+..++..+++++..+...+...+..+.
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~ 123 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELK 123 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444444333
No 471
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.40 E-value=2e+02 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 023459 40 ESLELENKEMKGTIKKLTIEIEGSEEDKRIL 70 (282)
Q Consensus 40 ~~LE~Ei~elkekI~~le~eIe~lr~~~~~l 70 (282)
..++.++..++..+..+...+..++.+...+
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666555444333
No 472
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.12 E-value=3.6e+02 Score=25.63 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..+...++.....+..+..+-.+|+.+|+.-...+...+++|..|
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555
No 473
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=38.10 E-value=3.1e+02 Score=24.92 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=43.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIE 222 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~ 222 (282)
++.++..+..++++.|..+..++-.+.....+++++ .+.+.-.-++.|.+|..++.
T Consensus 94 le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~---r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 94 LEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNE---RERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999988888777777776 44555577888888887755
No 474
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=38.03 E-value=4.5e+02 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.370 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
.+.+..+.++-.++..++..+..+
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESL 411 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHH
Confidence 556666666666677777766654
No 475
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.90 E-value=86 Score=27.71 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=30.1
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++++.++.+++.+|..|..-+..-++...+|.++|+-.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit 69 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGIT 69 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCc
Confidence 355666777778888888888888888888888888754
No 476
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.83 E-value=5.3e+02 Score=27.47 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 169 REKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
..++.++.++.+-.+.-...|-...
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665554443
No 477
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.71 E-value=1.4e+02 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
....+...++.+.+++..+......++.+|..++.....++
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~ 91 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIE 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46677888888899999999999999999998887755555
No 478
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=37.69 E-value=2.8e+02 Score=24.21 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
++..+.+..++...+..|......|...+.+
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555555555555544433
No 479
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=1.6e+02 Score=25.38 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 023459 29 NNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRI 69 (282)
Q Consensus 29 ~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~ 69 (282)
|.-++.|.+++..|..-+..+.+.|..+...+..+......
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999988888888888888887744433
No 480
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.60 E-value=2.9e+02 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=14.9
Q ss_pred cccchhHHHHHHHHHHHhhhhhhHHH
Q 023459 96 SEGDELGAEVAELKRVLGEKGVKLEE 121 (282)
Q Consensus 96 s~~~e~reEm~~LkseIee~e~eIee 121 (282)
.-.+.++.++.-++..|+....++.-
T Consensus 77 ~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 77 VLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred hhccchHHHHHHHHHHHHHHHHHhhH
Confidence 44566666666666666655544443
No 481
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=2e+02 Score=24.57 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=29.2
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
.=.|=| +++=+ +-.++..+++.+.+++...+.+++.+......
T Consensus 13 ~Vt~ED-Qq~iN--~Fsrl~~R~~~lk~dik~~k~~~enledA~~E 55 (131)
T KOG1760|consen 13 KVTFED-QQNIN--EFSRLNSRKDDLKADIKEAKTEIENLEDASNE 55 (131)
T ss_pred cccHHH-HHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334544 33333 67788888888888888888888777765443
No 482
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.96 E-value=2.3e+02 Score=23.14 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=41.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKS---------EKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~---------e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
++..|..-.++.......++..+..|......... ...+...=...+...|...+.-..+...-....-.|
T Consensus 42 ~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R 121 (151)
T cd00179 42 LKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666554332211 012222333444555555555555555555566666
Q ss_pred ccccccc
Q 023459 235 TLDGVNG 241 (282)
Q Consensus 235 ~~~~~~~ 241 (282)
.+.+||+
T Consensus 122 q~~i~~~ 128 (151)
T cd00179 122 QLEITGG 128 (151)
T ss_pred HHHHcCC
Confidence 7777754
No 483
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.79 E-value=2.6e+02 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERN 146 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~k 146 (282)
|+.++.......+.-...|..|+..+..+...++++..+
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444444444444444444444444
No 484
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.78 E-value=5.3e+02 Score=27.15 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..+-..+....-.|..+...+..+...+...++++.++...+.+|+++--.....+..+..+|.+.
T Consensus 361 ~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 361 SVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444555555555555555555555555555555555555555555555555555544
No 485
>PF14992 TMCO5: TMCO5 family
Probab=36.71 E-value=3.9e+02 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKLTI 58 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~ 58 (282)
|=.+|..-+..+..+..+|.....
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444433
No 486
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.57 E-value=1e+02 Score=30.36 Aligned_cols=65 Identities=26% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
+++++.+++....+-....++++.-..+|+..++.++.....+.++|+=|..++.+...+...++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
No 487
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=36.44 E-value=33 Score=35.65 Aligned_cols=126 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhhcCCCCCC----ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 023459 6 AVAINGVDDQT----TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELE 81 (282)
Q Consensus 6 ~~~~~~~~~~~----~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ 81 (282)
|+|+-|.=.|+ ++=||.+.|.+. .=.-++....+-+.-++++..++..+-.+..
T Consensus 331 FGAIAGFIEgGW~GmidGWYGf~HqN~--qG~G~AAD~kSTQ~aid~it~kvN~iiek~n-------------------- 388 (550)
T PF00509_consen 331 FGAIAGFIEGGWEGMIDGWYGFHHQNA--QGSGYAADLKSTQKAIDQITKKVNSIIEKMN-------------------- 388 (550)
T ss_dssp TSTBTTTBHSEBTTSTSSSEEEEEEET--TEEEEEEEHHHHHHHHHHHHHHHHHHHHTTT--------------------
T ss_pred HHHHHHHHhcCceeeecccccccccCc--cceeccccccchHHHHHHHHHHHHHHHHHhc--------------------
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhh---HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGL---KKEKVESEKKVRELERNVGLLEVREMEEK 158 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~L---E~e~~~~ek~i~~LE~kl~ele~~~~~~~ 158 (282)
.+|..-..+++++..++..|...+++....+=..+.++--| +..+...+..+..|.+|+... +.++
T Consensus 389 -------~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~q----L~~n 457 (550)
T PF00509_consen 389 -------KQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQ----LREN 457 (550)
T ss_dssp -------CEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HGTG
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHH----Hhcc
Q ss_pred hhhhch
Q 023459 159 SKRVRV 164 (282)
Q Consensus 159 ~~~gg~ 164 (282)
.+--|.
T Consensus 458 a~d~Gn 463 (550)
T PF00509_consen 458 AEDIGN 463 (550)
T ss_dssp EEEESS
T ss_pred chhcCC
No 488
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.37 E-value=2.2e+02 Score=22.63 Aligned_cols=104 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------------ccchhHHH
Q 023459 40 ESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMS---------------EGDELGAE 104 (282)
Q Consensus 40 ~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s---------------~~~e~reE 104 (282)
..+...++.+..+|..+...+..++.....++ .+...+..+.....+... ..+.+--.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~-------~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~ 74 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYE-------KAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVD 74 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEE
Q ss_pred HH-------HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 105 VA-------ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 105 m~-------~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+. .+...+.-....++.+.+.+..++..+..+..++..+...+..+
T Consensus 75 iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 75 LGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred ecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=36.19 E-value=2.8e+02 Score=23.75 Aligned_cols=104 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGE 114 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee 114 (282)
|-+--......++.++..+..+...-.....-.+.+. .-.+.-+.....-...+..+..++.+.- +..
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~----------~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~ 94 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIK----------DSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYI 94 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHhccccccCCcccHHHHHHHHHHHHH--HHH
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+..+-.+...|.-|..-+..+..+|..||..+..+
T Consensus 95 ~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 95 LETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=36.13 E-value=34 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccccccchhhHHHHhhhHhhhhhhcccC
Q 023459 255 EDSRLNWQLPLAAVTAAAVVCVCYARCR 282 (282)
Q Consensus 255 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 282 (282)
|..|+ -.|..|++..+....+|++||
T Consensus 1 GGGGa--i~~~~A~Lll~aG~~~~~rR~ 26 (27)
T TIGR03867 1 GGGGA--IAPWLAALLLAAGLLGFARRR 26 (27)
T ss_pred CCCch--hHHHHHHHHHHHHhhhHHhhc
No 491
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.80 E-value=88 Score=23.11 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIE 59 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~e 59 (282)
+..|..+|+.|++||.-++..+....+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PLN02678 seryl-tRNA synthetase
Probab=35.76 E-value=2.4e+02 Score=28.60 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 124 REVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 124 keIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.+|-.+..+...+..++..|..+...+ .|++....+.+...+.+..+..++..+|..|..+...+..++..+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~-sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKL-NKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.57 E-value=4.1e+02 Score=25.49 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhcccch
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEE-----------LEIEVSRLQHDLVTSMSEGDE 100 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~-----------L~ee~~~~q~dl~~~~s~~~e 100 (282)
+..|..+-..+..-+....-++.=..+.+...+........-..+-.. |...-..+...+.--..-|++
T Consensus 148 ~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~e 227 (309)
T PF09728_consen 148 IEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEE 227 (309)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREIS 180 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~ 180 (282)
..+.+..=...+..-+.+++...+-|..|+++...+..+-..-...|-.+ .+|+.....-=+.+..++..++...-
T Consensus 228 fq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m----~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 228 FQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM----AEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhH
Q 023459 181 GFKKKV 186 (282)
Q Consensus 181 ~Lk~~~ 186 (282)
.|..++
T Consensus 304 aLQ~er 309 (309)
T PF09728_consen 304 ALQAER 309 (309)
T ss_pred HHhhCC
No 494
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.50 E-value=1.2e+02 Score=24.16 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRIL 70 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~l 70 (282)
.++..++..|+.++..+..++..+..+++.-+.+...|
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=35.48 E-value=1.7e+02 Score=24.72 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAAR 76 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r 76 (282)
+...-.+|..+-+++..+...|..+-.++.+...+...++.||++
T Consensus 1 l~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAK 45 (121)
T PF03310_consen 1 LATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAK 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
No 496
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=35.25 E-value=3.8e+02 Score=25.01 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 30 NKVTELTKKVESLELENKEMKGTIKKLTI---------------EIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTS 94 (282)
Q Consensus 30 ~Ki~kL~~eI~~LE~Ei~elkekI~~le~---------------eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~ 94 (282)
+++..-...|+.||.++...+...+.+-. -|+..+|=-.+.. ++..+..++-..-..|.-.
T Consensus 14 e~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~----~a~~aq~e~q~Aa~~yerA 89 (239)
T PF05276_consen 14 EKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARR----KAKEAQQEAQKAALQYERA 89 (239)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_pred hcccchhHHHHHHHHHHHhhhh----------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 023459 95 MSEGDELGAEVAELKRVLGEKG----------------VKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEK 158 (282)
Q Consensus 95 ~s~~~e~reEm~~LkseIee~e----------------~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~ 158 (282)
.+.|..+++.+..+...+.... ..+.+.+.+....+..=..+-......+.++..| .
T Consensus 90 ~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~L----e--- 162 (239)
T PF05276_consen 90 NSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQL----E--- 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---
Q ss_pred hhhhchHHHHHH------hHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 159 SKRVRVEEEMRE------KLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLK 232 (282)
Q Consensus 159 ~~~gg~keelre------kl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~ 232 (282)
..++-.+.. ........+...+.++..|...+...|.....+-+.+..+..+|..-+..
T Consensus 163 ---k~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~~------------ 227 (239)
T PF05276_consen 163 ---KKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRRR------------ 227 (239)
T ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Q ss_pred ccccccccccccccccCCC
Q 023459 233 DKTLDGVNGTARDVKLNGD 251 (282)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (282)
..+.++.+++|+
T Consensus 228 -------~~~~~g~~~~~~ 239 (239)
T PF05276_consen 228 -------RSAESGPREPGV 239 (239)
T ss_pred -------CCCCCCCCCCCC
No 497
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.56 E-value=2.2e+02 Score=22.05 Aligned_cols=73 Identities=34% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVK 118 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~e 118 (282)
...|+.++....+-|.=+.-+|+.+++....|. .++..+++ .
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~----------~e~q~~q~----------------------------~ 47 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLS----------QEVQNAQH----------------------------Q 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH----------HHHHHHHH----------------------------H
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
++.++.+-+.|+.+-...+.+|+.|=.++.+
T Consensus 48 reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 48 REALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 498
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=34.47 E-value=5.1e+02 Score=26.29 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 73 VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
|..-+-.|..+......-|-.+..+ .....+.+.......-.+|...+..|..++.-|.+-+.=+.+-..
T Consensus 258 l~~tan~lr~Q~~~ve~af~~ri~e----------tqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqT 327 (421)
T KOG2685|consen 258 LRETANDLRTQADAVELAFKKRIRE----------TQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQT 327 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHH
Q ss_pred HHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Q 023459 153 REMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQK 219 (282)
Q Consensus 153 ~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~ 219 (282)
-++.|.-|-+.+==+..=...+=.++.+|...+-.|+.+|.+.++....+..--..++..|.-+.+
T Consensus 328 -Rle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~n 393 (421)
T KOG2685|consen 328 -RLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKAN 393 (421)
T ss_pred -HHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.40 E-value=3.2e+02 Score=27.74 Aligned_cols=92 Identities=27% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhh----hHHHHHHHH
Q 023459 53 IKKLTIEIEGSEEDKRILESVAAR--AEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGV----KLEELEREV 126 (282)
Q Consensus 53 I~~le~eIe~lr~~~~~le~i~~r--~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~----eIeelEkeI 126 (282)
++-+...-+.++ +.+..| ...+-..+..+...+-....+++.++.+.+.+...|..... ....+..++
T Consensus 4 ~k~ir~n~d~v~------~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~ 77 (429)
T COG0172 4 LKLIRENPDAVR------EKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEV 77 (429)
T ss_pred HHHhhhCHHHHH------HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 127 DGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 127 e~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+..+++.++..+.+++..+..+
T Consensus 78 ~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 78 KELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
No 500
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=34.38 E-value=3.8e+02 Score=24.87 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVL 112 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseI 112 (282)
..+...+..+..++..+...+...+..+..++.+..-...+..+..-=..++...+..+......++.+...+. ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~ 162 (327)
T TIGR02971 86 QRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS---EQI 162 (327)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_pred hhhhhhHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 113 GEKGVKLEELER-----EVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 113 ee~e~eIeelEk-----eIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
......+..+.. ++...+..+...+..+...+..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 163 DGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!