Query 023459
Match_columns 282
No_of_seqs 150 out of 159
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.5 8E-05 2.7E-09 63.6 24.5 57 90-146 70-126 (284)
2 3na7_A HP0958; flagellar bioge 98.1 0.0002 6.9E-09 64.6 18.6 10 258-267 205-214 (256)
3 1i84_S Smooth muscle myosin he 98.0 1.2E-05 4.2E-10 86.4 9.5 33 31-63 858-890 (1184)
4 3na7_A HP0958; flagellar bioge 98.0 0.00059 2E-08 61.5 18.4 34 31-64 19-52 (256)
5 1i84_S Smooth muscle myosin he 97.9 2.6E-05 9.1E-10 83.8 8.8 28 37-64 857-884 (1184)
6 2v71_A Nuclear distribution pr 97.2 0.046 1.6E-06 47.8 19.1 105 31-151 18-122 (189)
7 2v71_A Nuclear distribution pr 97.1 0.036 1.2E-06 48.4 17.2 72 78-152 45-116 (189)
8 2dfs_A Myosin-5A; myosin-V, in 96.9 0.014 4.8E-07 62.6 15.4 74 109-196 976-1049(1080)
9 2dfs_A Myosin-5A; myosin-V, in 96.5 0.054 1.8E-06 58.1 16.5 69 102-184 983-1051(1080)
10 3vkg_A Dynein heavy chain, cyt 96.5 0.31 1.1E-05 57.7 23.4 60 174-233 2025-2084(3245)
11 3oja_B Anopheles plasmodium-re 96.5 0.034 1.2E-06 54.3 13.4 79 105-194 504-582 (597)
12 2fxo_A Myosin heavy chain, car 96.4 0.2 6.9E-06 40.7 15.6 74 109-193 54-127 (129)
13 3vkg_A Dynein heavy chain, cyt 96.4 0.26 9E-06 58.2 22.0 67 167-233 2032-2098(3245)
14 2fxo_A Myosin heavy chain, car 96.3 0.32 1.1E-05 39.4 17.6 39 111-149 84-122 (129)
15 2efr_A General control protein 96.3 0.44 1.5E-05 40.3 20.4 50 99-148 66-115 (155)
16 3o0z_A RHO-associated protein 95.6 0.73 2.5E-05 39.5 15.7 94 111-215 42-135 (168)
17 3u1c_A Tropomyosin alpha-1 cha 95.5 0.43 1.5E-05 37.3 13.2 52 32-93 4-55 (101)
18 3oja_B Anopheles plasmodium-re 95.4 0.23 7.9E-06 48.4 13.9 10 168-177 570-579 (597)
19 3o0z_A RHO-associated protein 95.4 1.1 3.9E-05 38.3 18.3 17 31-47 7-23 (168)
20 3tnu_B Keratin, type II cytosk 95.2 0.26 9.1E-06 39.9 11.3 55 17-71 9-63 (129)
21 2ocy_A RAB guanine nucleotide 95.0 1.4 4.9E-05 37.2 15.8 131 37-199 13-151 (154)
22 3u59_A Tropomyosin beta chain; 94.9 0.66 2.3E-05 36.0 12.7 52 32-93 4-55 (101)
23 3tnu_A Keratin, type I cytoske 94.9 0.24 8.1E-06 40.3 10.5 55 17-71 11-65 (131)
24 3u1c_A Tropomyosin alpha-1 cha 94.8 0.96 3.3E-05 35.3 13.3 16 202-217 83-98 (101)
25 2b9c_A Striated-muscle alpha t 94.8 0.16 5.5E-06 42.5 9.3 103 47-152 20-122 (147)
26 3u59_A Tropomyosin beta chain; 94.7 1.1 3.7E-05 34.8 13.3 16 201-216 82-97 (101)
27 2efr_A General control protein 94.6 1.8 6.3E-05 36.5 19.3 33 118-150 71-103 (155)
28 3ol1_A Vimentin; structural ge 94.4 1.5 5E-05 35.2 13.7 33 118-150 63-95 (119)
29 2ocy_A RAB guanine nucleotide 93.4 3.2 0.00011 35.0 18.2 116 94-233 35-150 (154)
30 3tnu_A Keratin, type I cytoske 92.9 1.1 3.8E-05 36.3 10.7 81 104-198 32-112 (131)
31 3tnu_B Keratin, type II cytosk 92.9 1.3 4.4E-05 35.8 11.0 79 105-197 31-109 (129)
32 3swk_A Vimentin; cytoskeleton, 92.5 1.1 3.7E-05 34.1 9.5 44 107-150 32-75 (86)
33 2jee_A YIIU; FTSZ, septum, coi 92.1 1.3 4.3E-05 33.7 9.2 55 170-224 20-74 (81)
34 2v66_B Nuclear distribution pr 91.7 4.3 0.00015 32.5 13.9 47 104-150 43-89 (111)
35 3ol1_A Vimentin; structural ge 91.6 3.4 0.00012 33.0 11.9 34 31-64 21-54 (119)
36 2b9c_A Striated-muscle alpha t 90.1 7.3 0.00025 32.3 13.4 110 31-150 18-127 (147)
37 3hnw_A Uncharacterized protein 89.8 3 0.0001 34.3 10.3 6 31-36 29-34 (138)
38 3q8t_A Beclin-1; autophagy, AT 89.7 5.8 0.0002 30.6 12.4 48 104-151 5-52 (96)
39 3ghg_A Fibrinogen alpha chain; 89.6 4.3 0.00015 40.4 12.8 45 108-152 107-152 (562)
40 3cve_A Homer protein homolog 1 89.2 2.7 9.3E-05 31.2 8.6 64 34-107 4-67 (72)
41 1l8d_A DNA double-strand break 89.2 5.7 0.00019 30.6 11.1 34 31-64 4-37 (112)
42 2v4h_A NF-kappa-B essential mo 89.1 4 0.00014 32.6 10.1 56 31-93 25-80 (110)
43 3swk_A Vimentin; cytoskeleton, 89.0 2.3 7.9E-05 32.3 8.4 33 32-64 2-34 (86)
44 3l4q_C Phosphatidylinositol 3- 88.0 6.4 0.00022 33.6 11.4 52 82-133 17-68 (170)
45 3cvf_A Homer-3, homer protein 88.0 1.6 5.6E-05 32.9 6.8 67 31-107 7-73 (79)
46 1ic2_A Tropomyosin alpha chain 88.0 6.6 0.00023 29.1 10.5 49 102-150 5-53 (81)
47 3q8t_A Beclin-1; autophagy, AT 86.6 9.4 0.00032 29.4 12.6 58 168-225 37-94 (96)
48 2v4h_A NF-kappa-B essential mo 86.5 11 0.00036 30.2 11.0 84 37-141 24-107 (110)
49 3mq9_A Bone marrow stromal ant 86.1 12 0.00041 35.4 13.4 47 49-95 371-417 (471)
50 1l8d_A DNA double-strand break 85.2 9.7 0.00033 29.2 10.3 33 118-150 11-43 (112)
51 3iv1_A Tumor susceptibility ge 84.1 4.7 0.00016 30.4 7.5 65 164-228 12-76 (78)
52 2e7s_A RAB guanine nucleotide 84.1 4.1 0.00014 33.7 7.8 25 167-191 107-131 (135)
53 3bas_A Myosin heavy chain, str 84.0 12 0.0004 28.3 11.2 30 119-148 58-87 (89)
54 3mq9_A Bone marrow stromal ant 82.7 19 0.00065 33.9 13.2 13 82-94 418-430 (471)
55 2zqm_A Prefoldin beta subunit 81.8 15 0.00053 28.0 11.7 42 109-150 69-110 (117)
56 1go4_E MAD1 (mitotic arrest de 81.5 1.4 4.9E-05 34.6 4.0 64 167-233 30-96 (100)
57 2lw1_A ABC transporter ATP-bin 81.4 11 0.00039 28.2 9.0 59 34-92 19-80 (89)
58 3oja_A Leucine-rich immune mol 81.0 29 0.00098 32.8 13.8 45 104-148 354-398 (487)
59 3qh9_A Liprin-beta-2; coiled-c 80.9 7.5 0.00026 29.4 7.6 37 31-67 27-63 (81)
60 3iv1_A Tumor susceptibility ge 80.8 16 0.00053 27.5 10.0 50 101-150 23-72 (78)
61 2eqb_B RAB guanine nucleotide 80.4 19 0.00064 28.1 12.8 56 31-89 6-61 (97)
62 1fxk_A Prefoldin; archaeal pro 80.2 17 0.00057 27.4 11.3 38 112-149 67-104 (107)
63 3bas_A Myosin heavy chain, str 79.8 17 0.00059 27.3 11.1 17 104-120 15-31 (89)
64 3s4r_A Vimentin; alpha-helix, 78.9 19 0.00067 27.4 9.7 34 31-64 10-43 (93)
65 3s4r_A Vimentin; alpha-helix, 78.4 20 0.00069 27.3 11.2 21 39-59 11-31 (93)
66 1gk4_A Vimentin; intermediate 77.4 20 0.00068 26.7 9.6 60 125-198 2-61 (84)
67 2l5g_B Putative uncharacterize 77.0 1.8 6.1E-05 29.0 2.7 35 163-197 2-36 (42)
68 2v66_B Nuclear distribution pr 76.8 27 0.00091 27.8 13.9 35 117-151 35-69 (111)
69 3cvf_A Homer-3, homer protein 75.4 16 0.00054 27.5 8.0 54 74-127 19-72 (79)
70 2zqm_A Prefoldin beta subunit 75.2 7.6 0.00026 29.8 6.5 40 105-144 8-47 (117)
71 3mq7_A Bone marrow stromal ant 74.4 29 0.00099 28.0 9.7 17 79-95 29-45 (121)
72 2q6q_A Spindle POLE BODY compo 73.8 7.1 0.00024 28.8 5.5 56 166-221 6-61 (74)
73 3jsv_C NF-kappa-B essential mo 73.7 18 0.00062 28.1 8.1 55 32-93 4-58 (94)
74 1m1j_B Fibrinogen beta chain; 73.6 43 0.0015 32.7 12.7 27 207-233 170-196 (464)
75 1deq_A Fibrinogen (alpha chain 73.5 54 0.0019 31.3 13.0 43 105-147 115-157 (390)
76 2dq0_A Seryl-tRNA synthetase; 73.4 18 0.00061 35.0 10.0 28 168-195 81-108 (455)
77 3qh9_A Liprin-beta-2; coiled-c 73.1 17 0.0006 27.4 7.7 56 179-234 21-76 (81)
78 1ses_A Seryl-tRNA synthetase; 73.1 13 0.00044 35.5 8.9 20 171-190 79-98 (421)
79 2k48_A Nucleoprotein; viral pr 73.1 24 0.0008 28.0 8.7 51 11-62 17-67 (107)
80 1gmj_A ATPase inhibitor; coile 72.1 12 0.0004 28.6 6.6 40 103-145 40-79 (84)
81 2oto_A M protein; helical coil 71.9 39 0.0013 27.6 15.1 22 34-55 26-47 (155)
82 1x8y_A Lamin A/C; structural p 71.6 12 0.00043 28.0 6.7 58 125-196 4-61 (86)
83 1wle_A Seryl-tRNA synthetase; 70.3 26 0.00089 34.4 10.5 27 168-194 128-154 (501)
84 4h22_A Leucine-rich repeat fli 69.8 25 0.00085 27.7 8.2 63 164-226 17-79 (103)
85 3cve_A Homer protein homolog 1 69.4 30 0.001 25.5 8.2 55 73-127 12-66 (72)
86 1deq_A Fibrinogen (alpha chain 69.3 70 0.0024 30.6 12.7 23 171-193 135-157 (390)
87 2l5g_B Putative uncharacterize 68.8 9.9 0.00034 25.4 4.8 26 125-150 10-35 (42)
88 1m1j_B Fibrinogen beta chain; 68.8 90 0.0031 30.5 14.2 12 45-56 101-112 (464)
89 1wt6_A Myotonin-protein kinase 67.8 31 0.0011 26.0 8.0 31 102-132 30-60 (81)
90 3htk_A Structural maintenance 67.8 17 0.00058 24.9 6.3 47 86-132 9-55 (60)
91 3a7p_A Autophagy protein 16; c 67.7 22 0.00074 29.9 7.9 21 129-149 101-121 (152)
92 1jcd_A Major outer membrane li 67.3 18 0.00061 25.1 6.1 33 39-71 6-38 (52)
93 3efg_A Protein SLYX homolog; x 66.6 19 0.00066 26.7 6.7 48 103-150 14-61 (78)
94 3nmd_A CGMP dependent protein 66.3 22 0.00074 26.3 6.8 16 173-188 50-65 (72)
95 3uux_B Mitochondrial division 66.0 34 0.0012 30.7 9.4 48 103-150 177-224 (242)
96 3efg_A Protein SLYX homolog; x 65.5 22 0.00075 26.4 6.9 6 181-186 46-51 (78)
97 3he4_A Synzip6; heterodimeric 65.5 18 0.0006 24.7 5.7 27 119-145 26-52 (56)
98 3mov_A Lamin-B1; LMNB1, B-type 62.0 24 0.00083 27.1 6.7 58 123-194 11-68 (95)
99 2oqq_A Transcription factor HY 61.9 21 0.00071 23.8 5.4 24 127-150 6-29 (42)
100 2pms_C Pneumococcal surface pr 61.8 63 0.0022 26.2 10.1 23 128-150 10-32 (125)
101 3qne_A Seryl-tRNA synthetase, 61.7 26 0.00088 34.4 8.5 28 167-194 82-109 (485)
102 3hhm_B NISH2 P85alpha; PI3KCA, 61.7 1.1E+02 0.0036 28.9 12.5 45 89-133 133-177 (373)
103 1f5n_A Interferon-induced guan 60.8 1E+02 0.0034 30.8 12.7 29 122-150 485-513 (592)
104 1fxk_A Prefoldin; archaeal pro 60.7 50 0.0017 24.7 9.5 35 110-144 8-42 (107)
105 2iub_A CORA, divalent cation t 60.6 1E+02 0.0035 28.2 13.1 20 18-37 71-90 (363)
106 3j1r_A Archaeal adhesion filam 60.4 4.9 0.00017 24.1 1.9 11 268-278 15-25 (26)
107 1f5n_A Interferon-induced guan 60.1 1.4E+02 0.0049 29.7 16.8 24 164-187 513-536 (592)
108 3nmd_A CGMP dependent protein 59.8 22 0.00076 26.3 5.8 46 105-150 21-66 (72)
109 2ke4_A CDC42-interacting prote 59.7 42 0.0014 25.9 7.7 37 160-196 52-88 (98)
110 3jsv_C NF-kappa-B essential mo 58.8 61 0.0021 25.1 8.5 80 39-139 4-83 (94)
111 2w83_C C-JUN-amino-terminal ki 58.6 44 0.0015 25.0 7.3 36 112-147 39-74 (77)
112 2k1k_A Ephrin type-A receptor 58.0 5.4 0.00019 25.9 2.0 11 270-280 27-37 (38)
113 2dq3_A Seryl-tRNA synthetase; 57.8 16 0.00055 34.9 6.2 22 170-191 82-103 (425)
114 3he4_A Synzip6; heterodimeric 57.5 22 0.00075 24.3 5.0 34 107-140 21-54 (56)
115 1go4_E MAD1 (mitotic arrest de 56.4 42 0.0014 26.2 7.3 68 166-236 15-92 (100)
116 3htk_A Structural maintenance 56.3 43 0.0015 22.8 6.7 44 176-219 11-54 (60)
117 3c9i_A Tail needle protein GP2 56.2 69 0.0024 28.3 9.3 27 170-196 126-152 (242)
118 2xu6_A MDV1 coiled coil; prote 55.8 27 0.00092 25.8 5.7 49 102-150 20-68 (72)
119 2yko_A LINE-1 ORF1P; RNA-bindi 55.8 17 0.00058 32.5 5.5 44 108-151 4-47 (233)
120 3a7p_A Autophagy protein 16; c 55.0 76 0.0026 26.5 9.0 48 82-129 82-129 (152)
121 4etp_A Kinesin-like protein KA 54.5 32 0.0011 32.6 7.6 39 112-150 5-43 (403)
122 2i1j_A Moesin; FERM, coiled-co 54.3 54 0.0018 32.6 9.5 76 108-187 354-429 (575)
123 1m1j_C Fibrinogen gamma chain; 53.8 1.6E+02 0.0053 28.2 13.9 28 120-147 87-114 (409)
124 3ni0_A Bone marrow stromal ant 53.4 77 0.0026 24.6 8.7 62 79-140 22-83 (99)
125 3lss_A Seryl-tRNA synthetase; 53.0 74 0.0025 31.1 10.1 29 167-195 115-143 (484)
126 1jnm_A Proto-oncogene C-JUN; B 52.6 27 0.00092 24.4 5.1 34 31-64 23-56 (62)
127 4dzn_A Coiled-coil peptide CC- 52.5 30 0.001 21.3 4.5 27 31-57 3-29 (33)
128 2ke4_A CDC42-interacting prote 52.2 78 0.0027 24.3 10.5 30 117-146 62-91 (98)
129 1x79_B RAB GTPase binding effe 51.8 88 0.003 24.8 9.8 44 82-128 59-102 (112)
130 1ci6_A Transcription factor AT 51.3 30 0.001 24.4 5.3 33 32-64 25-57 (63)
131 1fxk_C Protein (prefoldin); ar 51.2 86 0.0029 24.5 12.2 40 32-71 3-42 (133)
132 1a93_B MAX protein, coiled coi 51.1 20 0.00067 22.9 3.7 28 117-144 7-34 (34)
133 1ik9_A DNA repair protein XRCC 51.1 1.2E+02 0.0042 26.3 11.2 19 107-125 179-197 (213)
134 4dk0_A Putative MACA; alpha-ha 50.7 74 0.0025 28.5 9.2 30 35-64 68-97 (369)
135 3uux_B Mitochondrial division 49.6 1.4E+02 0.0049 26.6 10.6 63 90-152 143-205 (242)
136 2yy0_A C-MYC-binding protein; 49.4 31 0.0011 23.7 4.9 33 31-63 20-52 (53)
137 3i00_A HIP-I, huntingtin-inter 49.3 73 0.0025 25.4 7.8 34 82-115 47-80 (120)
138 2yko_A LINE-1 ORF1P; RNA-bindi 48.3 32 0.0011 30.8 6.0 48 102-149 5-52 (233)
139 1t2k_D Cyclic-AMP-dependent tr 48.3 37 0.0013 23.5 5.3 33 32-64 24-56 (61)
140 2xdj_A Uncharacterized protein 47.9 60 0.0021 24.3 6.7 35 164-198 21-55 (83)
141 3viq_B Mating-type switching p 47.4 75 0.0026 24.1 7.1 30 32-61 3-32 (85)
142 2nrj_A HBL B protein; enteroto 46.9 6.5 0.00022 36.7 1.4 98 163-275 116-224 (346)
143 4gkw_A Spindle assembly abnorm 46.8 1.2E+02 0.0042 25.0 14.9 118 29-149 10-137 (167)
144 2xdj_A Uncharacterized protein 46.1 91 0.0031 23.3 8.0 49 39-97 22-70 (83)
145 3i00_A HIP-I, huntingtin-inter 45.4 1.1E+02 0.0039 24.3 10.0 19 201-219 95-113 (120)
146 4h22_A Leucine-rich repeat fli 44.6 58 0.002 25.6 6.3 24 108-131 28-51 (103)
147 4ev6_A Magnesium transport pro 44.3 1.8E+02 0.0061 26.2 14.5 9 19-27 51-59 (339)
148 1t3j_A Mitofusin 1; coiled coi 44.3 72 0.0025 24.7 6.8 38 56-93 52-89 (96)
149 2l2t_A Receptor tyrosine-prote 43.4 10 0.00036 25.4 1.6 11 272-282 27-37 (44)
150 1t3j_A Mitofusin 1; coiled coi 42.9 76 0.0026 24.6 6.7 57 33-92 39-95 (96)
151 1t6f_A Geminin; coiled-coil, c 42.7 35 0.0012 22.0 3.9 25 166-190 10-34 (37)
152 3fpp_A Macrolide-specific effl 42.6 91 0.0031 27.6 8.3 31 34-64 66-96 (341)
153 3swy_A Cyclic nucleotide-gated 42.3 59 0.002 21.9 5.2 14 82-95 19-32 (46)
154 2wt7_A Proto-oncogene protein 42.3 67 0.0023 22.4 5.9 31 33-63 26-56 (63)
155 2ks1_B Epidermal growth factor 42.3 11 0.00038 25.2 1.6 12 271-282 27-38 (44)
156 2lf0_A Uncharacterized protein 42.1 41 0.0014 27.2 5.2 88 128-231 7-97 (123)
157 2i1j_A Moesin; FERM, coiled-co 42.1 39 0.0013 33.5 6.3 37 75-111 363-399 (575)
158 2zdi_C Prefoldin subunit alpha 41.7 1.3E+02 0.0046 24.0 9.4 34 31-64 10-46 (151)
159 3he5_B Synzip2; heterodimeric 40.1 82 0.0028 21.1 6.0 12 77-88 5-16 (52)
160 1kd8_A GABH AIV, GCN4 acid bas 39.9 36 0.0012 21.9 3.6 25 106-130 4-28 (36)
161 2no2_A HIP-I, huntingtin-inter 39.2 1.3E+02 0.0046 23.3 12.9 50 101-150 52-101 (107)
162 2dq0_A Seryl-tRNA synthetase; 38.8 1.1E+02 0.0039 29.3 8.8 30 207-239 85-114 (455)
163 3m91_A Proteasome-associated A 38.6 93 0.0032 21.3 6.1 37 31-67 10-46 (51)
164 2k9y_A Ephrin type-A receptor 38.3 17 0.00058 23.2 2.0 6 276-281 34-39 (41)
165 1lwu_C Fibrinogen gamma chain; 38.0 74 0.0025 29.5 7.1 45 106-150 8-52 (323)
166 4etp_A Kinesin-like protein KA 38.0 81 0.0028 29.8 7.5 32 119-150 5-36 (403)
167 1ci6_A Transcription factor AT 37.7 1E+02 0.0035 21.5 6.3 29 119-147 25-53 (63)
168 4dk0_A Putative MACA; alpha-ha 37.6 1.1E+02 0.0037 27.4 8.1 21 42-62 68-88 (369)
169 2xzr_A Immunoglobulin-binding 37.2 1.5E+02 0.0051 23.2 13.6 14 48-61 10-23 (114)
170 2efl_A Formin-binding protein 36.8 2E+02 0.007 24.7 15.3 36 164-199 191-227 (305)
171 2k48_A Nucleoprotein; viral pr 36.3 1.6E+02 0.0054 23.2 8.2 28 123-150 34-61 (107)
172 1cii_A Colicin IA; bacteriocin 35.9 3.3E+02 0.011 26.9 11.8 11 237-247 532-542 (602)
173 1t2k_D Cyclic-AMP-dependent tr 35.8 1E+02 0.0034 21.2 5.9 29 119-147 24-52 (61)
174 2wq1_A General control protein 35.6 57 0.0019 20.6 4.0 25 105-129 2-26 (33)
175 2pms_C Pneumococcal surface pr 35.6 1.8E+02 0.006 23.6 9.5 26 39-64 8-33 (125)
176 3mov_A Lamin-B1; LMNB1, B-type 35.2 1.5E+02 0.005 22.6 7.8 19 32-50 14-32 (95)
177 3f6n_A Virion-associated prote 35.1 99 0.0034 25.0 6.4 40 32-71 4-43 (129)
178 3viq_B Mating-type switching p 33.9 1.5E+02 0.0052 22.4 7.9 29 166-194 4-32 (85)
179 2lw1_A ABC transporter ATP-bin 33.8 1.4E+02 0.0048 22.0 8.6 57 169-225 21-83 (89)
180 2aze_A Transcription factor DP 33.5 1.2E+02 0.0041 25.4 7.0 46 37-82 5-50 (155)
181 3onj_A T-snare VTI1; helix, HA 33.4 1.5E+02 0.0052 22.2 10.4 60 165-224 29-92 (97)
182 3ibp_A Chromosome partition pr 33.2 2.9E+02 0.01 25.4 10.8 35 32-66 5-39 (302)
183 3ghg_B Fibrinogen beta chain; 33.1 3.5E+02 0.012 26.3 14.0 14 95-108 136-149 (461)
184 2xzr_A Immunoglobulin-binding 33.1 1.7E+02 0.0059 22.8 13.7 32 31-62 7-38 (114)
185 2pnv_A Small conductance calci 33.1 72 0.0024 21.2 4.4 18 129-146 21-38 (43)
186 1vcs_A Vesicle transport throu 32.8 1.6E+02 0.0055 22.3 9.3 58 166-223 34-92 (102)
187 3haj_A Human pacsin2 F-BAR; pa 32.1 2.8E+02 0.0094 26.4 10.3 31 166-196 206-236 (486)
188 3fpp_A Macrolide-specific effl 32.0 1.2E+02 0.004 26.8 7.3 23 42-64 67-89 (341)
189 1gd2_E Transcription factor PA 31.7 69 0.0024 23.2 4.6 26 39-64 31-56 (70)
190 3ra3_A P1C; coiled coil domain 31.5 53 0.0018 19.5 3.2 19 38-56 8-26 (28)
191 2no2_A HIP-I, huntingtin-inter 31.3 1.8E+02 0.0063 22.5 13.4 24 37-60 15-38 (107)
192 1kd8_B GABH BLL, GCN4 acid bas 31.3 87 0.003 20.1 4.4 26 105-130 3-28 (36)
193 3ra3_B P2F; coiled coil domain 31.2 49 0.0017 19.6 3.0 23 32-54 2-24 (28)
194 1hjb_A Ccaat/enhancer binding 31.2 67 0.0023 24.3 4.6 11 218-228 63-73 (87)
195 3qne_A Seryl-tRNA synthetase, 31.0 2E+02 0.0068 28.1 9.2 72 44-129 33-104 (485)
196 1cii_A Colicin IA; bacteriocin 30.9 4E+02 0.014 26.3 15.2 6 188-193 451-456 (602)
197 1jnm_A Proto-oncogene C-JUN; B 30.4 82 0.0028 21.8 4.7 26 169-194 28-53 (62)
198 2ve7_A Kinetochore protein HEC 29.8 1.4E+02 0.0049 27.1 7.6 60 82-147 149-208 (315)
199 1gqe_A Release factor 2, RF2; 29.6 3.6E+02 0.012 25.4 10.4 29 32-60 11-41 (365)
200 2pnv_A Small conductance calci 29.4 1.1E+02 0.0037 20.3 4.8 30 32-61 11-40 (43)
201 4ev6_A Magnesium transport pro 29.4 3.1E+02 0.011 24.6 12.3 12 270-281 325-336 (339)
202 1gk4_A Vimentin; intermediate 29.3 1.7E+02 0.0058 21.4 9.6 6 38-43 9-14 (84)
203 1g6u_A Domain swapped dimer; d 29.0 84 0.0029 20.8 4.2 26 125-150 21-46 (48)
204 1m1j_A Fibrinogen alpha subuni 28.9 4.2E+02 0.014 25.9 14.7 17 73-89 63-79 (491)
205 2dq3_A Seryl-tRNA synthetase; 28.8 1.5E+02 0.0051 28.1 7.8 24 201-224 78-101 (425)
206 1jcd_A Major outer membrane li 28.8 1.4E+02 0.0049 20.4 6.9 31 104-134 5-35 (52)
207 3ljm_A Coil Ser L9C; de novo d 28.4 87 0.003 19.0 3.8 23 128-150 5-27 (31)
208 1bb1_B Designed, thermostable 28.2 1.1E+02 0.0038 19.1 4.4 28 31-58 3-30 (36)
209 3c9i_A Tail needle protein GP2 28.1 3.1E+02 0.011 24.2 11.3 43 108-150 89-131 (242)
210 4gkw_A Spindle assembly abnorm 28.1 2.5E+02 0.0086 23.1 18.7 20 39-58 13-32 (167)
211 3d5a_X RF1, peptide chain rele 28.1 2.9E+02 0.0099 26.0 9.4 22 129-150 74-95 (354)
212 1ytz_T Troponin T; muscle, THI 27.1 1.7E+02 0.0058 22.9 6.5 11 125-135 64-74 (107)
213 1ses_A Seryl-tRNA synthetase; 26.9 1.9E+02 0.0066 27.3 8.2 10 230-239 100-109 (421)
214 1gu4_A CAAT/enhancer binding p 26.7 1.2E+02 0.004 22.5 5.2 28 36-63 42-69 (78)
215 1kd8_B GABH BLL, GCN4 acid bas 26.6 92 0.0031 20.0 3.9 15 179-193 17-31 (36)
216 1dh3_A Transcription factor CR 26.5 87 0.003 21.4 4.2 22 35-56 27-48 (55)
217 1gu4_A CAAT/enhancer binding p 26.3 96 0.0033 22.9 4.7 29 168-196 41-69 (78)
218 1hjb_A Ccaat/enhancer binding 26.1 1.2E+02 0.004 23.0 5.2 9 12-20 9-17 (87)
219 1j1d_B Troponin T, TNT; THIN f 25.6 91 0.0031 24.4 4.6 52 179-230 44-95 (106)
220 1lq7_A Alpha3W; three helix bu 25.1 80 0.0027 22.2 3.7 18 133-150 4-21 (67)
221 2w83_C C-JUN-amino-terminal ki 24.9 2.1E+02 0.0073 21.2 8.4 33 115-147 35-67 (77)
222 3m48_A General control protein 24.8 70 0.0024 20.2 3.0 21 107-127 4-24 (33)
223 2lx0_A Membrane fusion protein 24.6 39 0.0013 20.6 1.8 17 262-278 5-21 (32)
224 1fxk_C Protein (prefoldin); ar 24.6 1.9E+02 0.0064 22.4 6.5 38 113-150 91-128 (133)
225 3lay_A Zinc resistance-associa 24.4 2.4E+02 0.008 23.8 7.4 60 165-224 73-132 (175)
226 2oqq_A Transcription factor HY 24.4 1.3E+02 0.0046 19.8 4.5 6 135-140 21-26 (42)
227 2qyw_A Vesicle transport throu 24.2 2.4E+02 0.008 21.4 9.4 55 166-220 45-100 (102)
228 2dgc_A Protein (GCN4); basic d 24.1 1.1E+02 0.0039 21.4 4.5 7 82-88 51-57 (63)
229 3oa7_A Head morphogenesis prot 24.0 1.2E+02 0.0042 26.4 5.5 24 98-121 32-55 (206)
230 3c3f_A Alpha/beta peptide with 23.8 88 0.003 19.8 3.4 24 105-128 3-26 (34)
231 3ghg_C Fibrinogen gamma chain; 23.8 4.8E+02 0.017 24.9 11.7 8 82-89 59-66 (411)
232 3lss_A Seryl-tRNA synthetase; 23.8 3.6E+02 0.012 26.3 9.5 29 43-71 36-64 (484)
233 2iw5_B Protein corest, REST co 23.7 2.6E+02 0.0087 24.9 7.7 37 203-239 84-120 (235)
234 4g1a_A AQ-C16C19 peptide; heli 23.6 28 0.00095 21.3 1.0 24 128-151 4-27 (32)
235 3ghg_C Fibrinogen gamma chain; 23.6 4.9E+02 0.017 24.9 14.0 18 177-194 119-136 (411)
236 2xnx_M M protein, M1-BC1; cell 23.4 2.5E+02 0.0085 23.3 7.0 105 35-149 8-126 (146)
237 1wle_A Seryl-tRNA synthetase; 23.4 2.8E+02 0.0096 27.0 8.7 27 121-147 120-146 (501)
238 2z5i_A TM, general control pro 23.2 1.8E+02 0.006 19.8 5.2 31 31-61 13-43 (52)
239 2klu_A T-cell surface glycopro 23.2 28 0.00097 25.4 1.1 8 259-266 3-10 (70)
240 3m9b_A Proteasome-associated A 22.8 87 0.003 28.2 4.5 33 32-64 56-88 (251)
241 4fi5_A Nucleoprotein; structur 22.4 2.9E+02 0.01 21.9 7.9 31 31-61 23-53 (113)
242 1d7m_A Cortexillin I; coiled-c 22.4 2.7E+02 0.0092 21.4 13.1 96 80-200 2-97 (101)
243 1p9i_A Cortexillin I/GCN4 hybr 22.3 1E+02 0.0036 18.6 3.3 27 167-193 3-29 (31)
244 3a7o_A Autophagy protein 16; c 22.2 2.4E+02 0.0081 20.7 7.2 36 105-140 34-69 (75)
245 1m1j_C Fibrinogen gamma chain; 22.2 5.1E+02 0.017 24.6 13.4 27 208-234 108-134 (409)
246 2oxj_A Hybrid alpha/beta pepti 21.8 1E+02 0.0035 19.5 3.4 23 105-127 3-25 (34)
247 2aze_B Transcription factor E2 21.7 1.5E+02 0.0051 23.0 5.2 36 31-66 7-42 (106)
248 2ic6_A Nucleocapsid protein; h 21.7 2.5E+02 0.0086 20.8 7.9 27 124-150 5-31 (78)
249 3u06_A Protein claret segregat 21.6 1.7E+02 0.0058 27.7 6.6 18 182-199 43-60 (412)
250 1m1j_A Fibrinogen alpha subuni 21.5 5.8E+02 0.02 25.0 13.3 28 108-135 116-143 (491)
251 1zza_A Stannin, AG8_1; helix, 21.2 45 0.0016 24.9 1.9 11 270-280 29-39 (90)
252 2zvf_A Alanyl-tRNA synthetase; 20.9 2.1E+02 0.007 22.9 6.2 29 121-149 29-57 (171)
253 1nkp_B MAX protein, MYC proto- 20.4 1.6E+02 0.0054 21.3 4.9 10 42-51 52-61 (83)
254 1uo4_A General control protein 20.2 1.1E+02 0.0036 19.4 3.2 24 105-128 3-26 (34)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.53 E-value=8e-05 Score=63.64 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023459 90 DLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERN 146 (282)
Q Consensus 90 dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~k 146 (282)
.+.........+...+..+...+......+..+...+..+...+..+...+..+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (284)
T 1c1g_A 70 KLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444443333333333333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.13 E-value=0.0002 Score=64.59 Aligned_cols=10 Identities=0% Similarity=-0.114 Sum_probs=4.7
Q ss_pred cccchhhHHH
Q 023459 258 RLNWQLPLAA 267 (282)
Q Consensus 258 ~~~~~~~~~~ 267 (282)
.+.+.+-.++
T Consensus 205 ~~~lppq~~~ 214 (256)
T 3na7_A 205 FIRLNDKIYT 214 (256)
T ss_dssp CCBCCHHHHH
T ss_pred CeeeCHHHHH
Confidence 3445444444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.01 E-value=1.2e-05 Score=86.38 Aligned_cols=33 Identities=6% Similarity=0.136 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~l 63 (282)
.+..++.++..+...+..+...+..++..+..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444444444444444333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.97 E-value=0.00059 Score=61.50 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
++.+|...+..+-.++..+...+..+...+..+.
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~ 52 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE 52 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.87 E-value=2.6e-05 Score=83.84 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+++..+..++..++..+..++..+..++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele 884 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELE 884 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.24 E-value=0.046 Score=47.81 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
....+..+...++.+.++....-+.++.+++.-- +....|...|...+.++..++.+-.+. +....+
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL------~~~Ek~~~~L~~~~~~L~~E~e~~k~K-------~~~~~~ 84 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELEAQL------VQAEQRNRDLQADNQRLKYEVEALKEK-------LEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 6677778888888888888888777777766322 333455556666666665554443222 222222
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
. ....+..++++|..|......+...|++||+.-..+|
T Consensus 85 e---~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 85 Q---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 1223566666666666666666666666666666663
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.12 E-value=0.036 Score=48.44 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 78 EELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 78 ~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
++|+.++..+.....+-.+....+..+...++..+.... .+....|..|+.++..+......|..+|..||+
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665444444443444444444444333222 222334777777777777777777777777765
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.92 E-value=0.014 Score=62.57 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHh
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDD 188 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~ 188 (282)
..+....++.+..++.+++.++..+..+.+....++++...+ +++|.+++..++.++..|+.++++
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~--------------~~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY--------------KHETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444333 356667777777777777777777
Q ss_pred HHHhhccc
Q 023459 189 LESELGNC 196 (282)
Q Consensus 189 L~~~l~~~ 196 (282)
|+..+...
T Consensus 1042 l~~~~~~~ 1049 (1080)
T 2dfs_A 1042 LNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77555543
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.54 E-value=0.054 Score=58.12 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISG 181 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~ 181 (282)
...+..+..+++.++..+.++.++...++.....+. .+|+.++..|+ .....|++++++++..+.+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~-----------~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELK-----------EQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333 23334444441 1345556666666655555
Q ss_pred HHH
Q 023459 182 FKK 184 (282)
Q Consensus 182 Lk~ 184 (282)
..+
T Consensus 1049 ~~~ 1051 (1080)
T 2dfs_A 1049 QAK 1051 (1080)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.51 E-value=0.31 Score=57.69 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 174 EKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 174 eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
.....+...+.++..+...++.++++...+..+...++.++...+.++..+.+.|.||-.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333344444444444444444444455566677777788888889999999999965
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.47 E-value=0.034 Score=54.35 Aligned_cols=79 Identities=24% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
...+...+.......+..+.+....++.+....+....++++...++. --+.++.++.++.+++..++.
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-----------~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK-----------QLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH-----------HHhhhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444554444444444444444444422 223334444444455555555
Q ss_pred hHHhHHHhhc
Q 023459 185 KVDDLESELG 194 (282)
Q Consensus 185 ~~e~L~~~l~ 194 (282)
++.+|..++.
T Consensus 573 ~~~~l~~~~~ 582 (597)
T 3oja_B 573 KVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 5544444443
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.41 E-value=0.2 Score=40.68 Aligned_cols=74 Identities=28% Similarity=0.389 Sum_probs=41.6
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHh
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDD 188 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~ 188 (282)
...+..-.......+.....|...+..++.+|.+++.++...+- .-..|-.....++.++.+|+..++.
T Consensus 54 ~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee-----------~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 54 QLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE-----------MNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555666666666666666666666666632 2344555555556666666666666
Q ss_pred HHHhh
Q 023459 189 LESEL 193 (282)
Q Consensus 189 L~~~l 193 (282)
+...+
T Consensus 123 ~e~~l 127 (129)
T 2fxo_A 123 LELTL 127 (129)
T ss_dssp HHTTT
T ss_pred HHHhh
Confidence 65443
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.40 E-value=0.26 Score=58.24 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
..+.++.+++..+..|+.+.+.+..+.+.++++-..++.++.-.+.=|..|-.|..+=...+..|+.
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 3445566666666666666666666666666665556666666666666666666655555555544
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.34 E-value=0.32 Score=39.45 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
.+......+++.+.....|...++.++..+.+|+..|..
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.26 E-value=0.44 Score=40.29 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 99 DELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 99 ~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
+.+...+..+...|..+.....+.+...+..+..+..+++.|..|+..|.
T Consensus 66 ekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 66 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555554444
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.55 E-value=0.73 Score=39.50 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
.+...+....++...+..|......+++.+..|...+... -++.-.+-+-+.+++-.|..|..+++.++
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE-----------r~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE-----------RRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555556666666666666666666555 23444555555666666666666666666
Q ss_pred HhhccchhhhhhhHHHHHHHHHHHH
Q 023459 191 SELGNCKSEKNSAEKTVKEMDERIL 215 (282)
Q Consensus 191 ~~l~~~k~e~~~~e~~~~~~e~~I~ 215 (282)
..+.....+.+.+..++..++....
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555554444444444444333
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.50 E-value=0.43 Score=37.29 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
+..++.++..|..+.....++...++..+..+. .+...++.++.++++-+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e----------~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAE----------ERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHH
Confidence 455666666666666666666666555555554 3344444777777765544
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.40 E-value=0.23 Score=48.43 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=3.9
Q ss_pred HHHhHHHHHH
Q 023459 168 MREKLDEKDR 177 (282)
Q Consensus 168 lrekl~eke~ 177 (282)
++.++.++..
T Consensus 570 ~~~~~~~l~~ 579 (597)
T 3oja_B 570 KRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.39 E-value=1.1 Score=38.29 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENK 47 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~ 47 (282)
++..|.+++.++...+.
T Consensus 7 Ki~~LekQL~E~n~kLk 23 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLR 23 (168)
T ss_dssp ---CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.16 E-value=0.26 Score=39.87 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=18.4
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.+.||.....+-...+.+-...+.....++..++-.|.+++.+|+.++....+|+
T Consensus 9 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 9 AESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678875433221112222233344455666666666666666666665555555
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.99 E-value=1.4 Score=37.18 Aligned_cols=131 Identities=21% Similarity=0.266 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKG 116 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e 116 (282)
...+.|+..+..++..+......|..+.... +++..+..++.+ +..++..|...+....
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r--------------~~~~~l~~~~~~-------~~~e~~~L~~~l~~E~ 71 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLK--------------EDYNTLKRELSD-------RDDEVKRLREDIAKEN 71 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH--------------HHHHHHHTHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhh-------hhHHHHHHHHHHHHHH
Confidence 4556677777777777776666666655332 223333322222 3334444444444444
Q ss_pred hhHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHh
Q 023459 117 VKLEELEREVDGLKKEKVES--------EKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDD 188 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~--------ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~ 188 (282)
......+.....++.++..+ .+++.+-...-..++. | =+.|+.++.+++..+..+..++..
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~-----r------~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEI-----L------NKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333 3333333222222211 1 156778888889999999999999
Q ss_pred HHHhhccchhh
Q 023459 189 LESELGNCKSE 199 (282)
Q Consensus 189 L~~~l~~~k~e 199 (282)
|+.-+..+.++
T Consensus 141 LK~v~~~m~~e 151 (154)
T 2ocy_A 141 LKKVMHSLDNE 151 (154)
T ss_dssp HHHTTSCCC--
T ss_pred HHHHHHHhhhc
Confidence 99888877664
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.94 E-value=0.66 Score=36.04 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
+..++.++..|..+.....++...++..+..+. .++..++.++.++++-+..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e----------~~~~~~E~ei~sL~kKiq~ 55 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAE----------DRCKQLEEEQQGLQKKLKG 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHH
Confidence 345566666666666666666655555555544 2333344666666665544
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.93 E-value=0.24 Score=40.30 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=15.1
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 17 TEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 17 ~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
.+.||.....+-...+.+-...+.....++.+++-.|.+++.+|+.++....+|+
T Consensus 11 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 11 AEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5778874432221112222233344455556666666666666666665555555
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.83 E-value=0.96 Score=35.27 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 023459 202 SAEKTVKEMDERILLW 217 (282)
Q Consensus 202 ~~e~~~~~~e~~I~~l 217 (282)
.++..+.++.+.|+.+
T Consensus 83 ~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 83 KAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544443
No 25
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.81 E-value=0.16 Score=42.50 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 023459 47 KEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREV 126 (282)
Q Consensus 47 ~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeI 126 (282)
..+..++.......+....-.++|+ .|.-.-++++..+...|-......+++.-.+..+...+......++..+...
T Consensus 20 ~~a~~kLeeaek~adE~eR~~k~lE---~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRa 96 (147)
T 2b9c_A 20 ATALQKLEEAEKAADESERGMKVIE---SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 96 (147)
T ss_dssp THHHHHHHHHHHHHHHHTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333 4444444555555555555544445555555555555555555555556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 127 DGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 127 e~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
...+..+..++..|...-..+.-+++
T Consensus 97 e~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 97 ELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666666666655
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.69 E-value=1.1 Score=34.78 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILL 216 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~ 216 (282)
.+++..+.++.+.|+.
T Consensus 82 ~~AE~evasLnRriql 97 (101)
T 3u59_A 82 TDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.56 E-value=1.8 Score=36.46 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.-..++..|..|....+..+.+-..-++.+..|
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kL 103 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKL 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.35 E-value=1.5 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
....++.+|.+|++.+....-...+|+.++..|
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 344455566666665555555555555555444
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.39 E-value=3.2 Score=35.03 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=68.9
Q ss_pred hhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHH
Q 023459 94 SMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLD 173 (282)
Q Consensus 94 ~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~ 173 (282)
+...++.++.++..+.........+...+...+..-.......+.....+++.+.+| . ..+=++-+.=..
T Consensus 35 ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL----T------asLFeEAN~MVa 104 (154)
T 2ocy_A 35 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL----T------ASLFDEANNMVA 104 (154)
T ss_dssp HHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----H------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H------HHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666666677777777777766 3 333333333334
Q ss_pred HHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 174 EKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 174 eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
.-.++-..++.+...|...+ ...+.-|..++.++.++..|+..+.+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql--------------~e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQL--------------REKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444445555555554444 34555666677777777777766654
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.91 E-value=1.1 Score=36.28 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFK 183 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk 183 (282)
.+...+.+|.+....|..++.+|.++......++..|.+.+.+.... + ..+...+..++.++..++
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~----l----------~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ----L----------AQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777777777777777766544 2 556677777777777777
Q ss_pred HhHHhHHHhhccchh
Q 023459 184 KKVDDLESELGNCKS 198 (282)
Q Consensus 184 ~~~e~L~~~l~~~k~ 198 (282)
..+...-.+++++=|
T Consensus 98 ~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 98 CEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666665554433
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.87 E-value=1.3 Score=35.76 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKK 184 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~ 184 (282)
+...+.+|.+....+..++.+|.+++..+..++..|.+.+.+.... + ..+...+..++.++..++.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~----l----------~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA----L----------KDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHhHHHHHH
Confidence 3334555555566666666666667777777777777766665443 2 4566667777777777776
Q ss_pred hHHhHHHhhccch
Q 023459 185 KVDDLESELGNCK 197 (282)
Q Consensus 185 ~~e~L~~~l~~~k 197 (282)
.+...-.+++++=
T Consensus 97 e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 97 DMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 32
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.46 E-value=1.1 Score=34.08 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++..++..-.....++.++.+|++.+-...-...+||.++.-|
T Consensus 32 dfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 32 RLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35556666666666667777777777766666666666666655
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.05 E-value=1.3 Score=33.70 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
+.|.-+..+|.+|+.+...|..+.+++++....+..+...+......++.+++.+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777776666666555555566666666666666665554
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.72 E-value=4.3 Score=32.47 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..++...+.+...|.+++..=+.|+.....+-..+.+++.++...
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445666666666666666666666666666666777777766655
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.55 E-value=3.4 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.|..|+++|..+..+...+..++..+...++.++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666555555555
No 36
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.09 E-value=7.3 Score=32.34 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKR 110 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lks 110 (282)
++.....++..++..-.+..-..+.+++.-.... .|-..|+.++....+-.-+....|+++.-.+.-+..
T Consensus 18 rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~de----------Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~ 87 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADESERGMKVIESRAQKDE----------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 87 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555556666666655555555555554444333 344455577777777777778888888888888999
Q ss_pred HHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 111 VLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 111 eIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.-....+..+..|..|+..+..+.+.++.|+-.-..-
T Consensus 88 dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 88 DLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 9999999999999999999999999999999998877766
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.75 E-value=3 Score=34.33 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.3
Q ss_pred hHHHHH
Q 023459 31 KVTELT 36 (282)
Q Consensus 31 Ki~kL~ 36 (282)
-+..++
T Consensus 29 ~L~~vA 34 (138)
T 3hnw_A 29 YLQRVA 34 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.69 E-value=5.8 Score=30.60 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
++..+...+..+...-..+..++..|++....+...|..++.....+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777777777777777777777777777777766663
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.58 E-value=4.3 Score=40.42 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHh-hhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 108 LKRVLG-EKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 108 LkseIe-e~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
...+|. +++..|.-|+..|..--..|+.|+..|+++-.+|..||+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 555555555555555556666666666666666666654
No 40
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.21 E-value=2.7 Score=31.19 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAE 107 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~ 107 (282)
.+..++..++.+...++.++..++..++..+..+..+. .++.++...|-.+..+..+++.-|++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~----------~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFR----------SNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888887776666 77777777776666554444444443
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.17 E-value=5.7 Score=30.57 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.+..+..++..+..++..+...+..+..+|..+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.13 E-value=4 Score=32.61 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
.+..|..++..++.-+......|+.++.+|...+.+...+ ..|+.++.--..||..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I-------~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV-------PVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 5667777777777777777777777776666655433222 2444555444444443
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.01 E-value=2.3 Score=32.26 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
|..|+.+|..+..+...+..+++.+...++.++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777776666
No 44
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=88.02 E-value=6.4 Score=33.64 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHH
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEK 133 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~ 133 (282)
..+......+.+....||.+-++......++......++....-|.=.+...
T Consensus 17 ~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 17 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888888888888888777777665555544433
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.96 E-value=1.6 Score=32.93 Aligned_cols=67 Identities=25% Similarity=0.319 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAE 107 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~ 107 (282)
.+..+..++..++.+...++.++..++..++..+..+..+. .++.++...|-.+..+..+++.-|++
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~----------~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERAR----------AEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888887776666 77777777777766665554444444
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.95 E-value=6.6 Score=29.07 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..|..++.+.+.........+..+...+......+..|..|..++..+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544444455555555554444
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.56 E-value=9.4 Score=29.38 Aligned_cols=58 Identities=12% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
+..+|..++.+...|..+....-.+...++-.-.+...+..+++..+.-.+..+..+.
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444433333333333322223334444555555555555544443
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.53 E-value=11 Score=30.17 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKG 116 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e 116 (282)
-++..|...+..+...+......|+.++ .-|+.+.+.|++ + .=++..+.-.+.++....
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk------~ei~q~~~~lE~-I--------------~vLkaQv~IY~~DF~aER 82 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLK------EEAEQHKIVMET-V--------------PVLKAQADIYKADFQAER 82 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHTH-H--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHccch
Confidence 3789999999999999999999999998 445555555532 2 223444455677777777
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVR 141 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~ 141 (282)
...+.+..++..|...+..+..++.
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7777776666666666666555543
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.07 E-value=12 Score=35.35 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 49 MKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSM 95 (282)
Q Consensus 49 lkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~ 95 (282)
..+-++.+...+..+-.+..+-..+.....+|...+.+.|..|.+..
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555554444444444455666667777777777665543
No 50
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.17 E-value=9.7 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 118 KLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 118 eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+.++...+..|...+..+..++..+...+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.11 E-value=4.7 Score=30.36 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVI 228 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~ 228 (282)
++-.|++.+.+...+|..|+...+.|..-.+.+++--..+.++...++.+|.-++....++.+++
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888999999999999999999888777766657777888888888888888888887643
No 52
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.05 E-value=4.1 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=6.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHH
Q 023459 167 EMREKLDEKDREISGFKKKVDDLES 191 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~ 191 (282)
.|..++.+++..+..++.+...|+.
T Consensus 107 ~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 107 RLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444444443
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.03 E-value=12 Score=28.29 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
..+.+.....|.+.+..++.+|.+++.++.
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555566666666666666666666554
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.70 E-value=19 Score=33.94 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhh
Q 023459 82 IEVSRLQHDLVTS 94 (282)
Q Consensus 82 ee~~~~q~dl~~~ 94 (282)
.++...-+-+..-
T Consensus 418 ~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 418 AQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhcchhHHHH
Confidence 5555554544443
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.82 E-value=15 Score=28.03 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=28.0
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 109 KRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 109 kseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
...+..+...++.++..|..|+..+..+++++.+++.++...
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666677777777777777777777777665
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.49 E-value=1.4 Score=34.64 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHH--HHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 167 EMREKLDEKDREISG--FKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 167 elrekl~eke~ei~~--Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
.|++.++.++.++.. |+...+....++..+.++| ..+. ++.+..|..|+.++..+...+..|.+
T Consensus 30 rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~---~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 30 RLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVAR---QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333332 3334444444555555555 2221 22345556666666665555555443
No 57
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.36 E-value=11 Score=28.19 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEG---SEEDKRILESVAARAEELEIEVSRLQHDLV 92 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~---lr~~~~~le~i~~r~~~L~ee~~~~q~dl~ 92 (282)
+..+++..|+.+|..+..+|..++..+.. +..+-..+..+..+-..++.++..++..|.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888854 334555566566666666666666666553
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.04 E-value=29 Score=32.83 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVG 148 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ 148 (282)
++.........+..+..+++..+........+.+..+....+++.
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 333344433344444444444444444444444444444433333
No 59
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.94 E-value=7.5 Score=29.43 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
.|..|.-+++++++++....-++++...+|..++...
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5666777777777777777777777777777777333
No 60
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.83 E-value=16 Score=27.47 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..++|..|+.--+++..--..++.-|..|+.+...+++.|..|..+..+|
T Consensus 23 ~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 23 AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777776
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.37 E-value=19 Score=28.10 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQH 89 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~ 89 (282)
.+..+..++..|+.+...+..++..+...+..-+..+..++ .....++.++..+-.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE---~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE---EEADKLNKEVEDLTA 61 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 47788888888888888888888888888877765555555 333334444444443
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=80.22 E-value=17 Score=27.42 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=20.8
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
...+...++.++..|..|+..+..++.++.+++.+|..
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555666666666666666655543
No 63
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.77 E-value=17 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhhhhHH
Q 023459 104 EVAELKRVLGEKGVKLE 120 (282)
Q Consensus 104 Em~~LkseIee~e~eIe 120 (282)
+|......+..++..+.
T Consensus 15 Em~~~eeel~~lke~l~ 31 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 64
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.87 E-value=19 Score=27.41 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.+..|+.+.+.+-.++..++..=..++.+|..+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666665555555555555555554443
No 65
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.41 E-value=20 Score=27.33 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023459 39 VESLELENKEMKGTIKKLTIE 59 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~e 59 (282)
+..|..+.....++++.|+.+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqq 31 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQ 31 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444443
No 66
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=77.39 E-value=20 Score=26.68 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchh
Q 023459 125 EVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKS 198 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~ 198 (282)
+|.+++..+..++..+.+.+.+.... + ..+...+..++.++..++..+.....+++.+=|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~----~----------~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVE----A----------ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777776544 2 556667777777777777666666555554433
No 67
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=77.01 E-value=1.8 Score=28.96 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.1
Q ss_pred chHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch
Q 023459 163 RVEEEMREKLDEKDREISGFKKKVDDLESELGNCK 197 (282)
Q Consensus 163 g~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k 197 (282)
-.|++|-++++..+++|...++++..|...+.+|.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999988888888877766554
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.76 E-value=27 Score=27.82 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
..+..++++|..|......+...|++||+.-..+|
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34566666777777777777777777777777774
No 69
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.39 E-value=16 Score=27.47 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 023459 74 AARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 74 ~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe 127 (282)
..|...|+.+++.++.++.++...-.-++.++..+-..++-.-.++.++...+.
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 377778889999999988888777666666666555555554444444444443
No 70
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.17 E-value=7.6 Score=29.83 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
...+-..+......+..+...+..++..+.+++..+.+|+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555444
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.43 E-value=29 Score=27.98 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 023459 79 ELEIEVSRLQHDLVTSM 95 (282)
Q Consensus 79 ~L~ee~~~~q~dl~~~~ 95 (282)
+|+.++.+.|..|....
T Consensus 29 lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666665555544
No 72
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=73.84 E-value=7.1 Score=28.76 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEI 221 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~ 221 (282)
.+|..++.+++.+|..|+.-+..|+.+|-.--.-...++.+...++.+|.+|-+..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 46778999999999999999999998876432222456666677777777766543
No 73
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=73.68 E-value=18 Score=28.06 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
+..|...+..++.-+..-...|+.+...|...+.+. .+-..|+.++.--..||..
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~-------E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-------ETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666665333 2333555666655566654
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.57 E-value=43 Score=32.69 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023459 207 VKEMDERILLWQKEIEEAEKVIAGLKD 233 (282)
Q Consensus 207 ~~~~e~~I~~l~~e~~e~~~~~~~~~~ 233 (282)
+..++..+..++.++..++..+..+.+
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555554444444
No 75
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.51 E-value=54 Score=31.33 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
...|+..|.-++..|...-..|..|+..+..+-.+|..||-.|
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666665566666666666666666666555
No 76
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.35 E-value=18 Score=35.00 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
++.++..++.++.++.+++..+-..+-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444555555555555555444433
No 77
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.13 E-value=17 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 179 ISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
-..|-.++++|+..+.++.++..+.++++++....|..|+.++..-..-|..|++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33566677777777777777778888999999999999999888777777777664
No 78
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.12 E-value=13 Score=35.55 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHhHHhHH
Q 023459 171 KLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 171 kl~eke~ei~~Lk~~~e~L~ 190 (282)
++.+++.++.++..++..+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 79 EAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 79
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=73.11 E-value=24 Score=27.96 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCCCCccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 11 GVDDQTTEDFFDPDQDGSNNKVTELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 11 ~~~~~~~~~W~dv~~~e~~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
|++...+-||-.++..-. +.+.+|..++...|.++-....+++..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~tM-~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 17 GLDSTENLYFQGIDPFTM-STLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp SCCCCCCCCCCCCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655444677777777664 578889999999999888888888777766543
No 80
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=72.11 E-value=12 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
+.+..|+..+ ..+|..+.++|..++..|....++|++|..
T Consensus 40 EqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 40 EQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444433 556666777777777777777777766654
No 81
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.89 E-value=39 Score=27.57 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023459 34 ELTKKVESLELENKEMKGTIKK 55 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~ 55 (282)
.|..+...|..++..+...+..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~ 47 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGR 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 82
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.56 E-value=12 Score=28.01 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 125 EVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
+|++|+.....++..+.+++.+.... + +.+...+..++.++.+++..+.....+++.+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~----l----------~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARE----R----------DTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666655333 2 4555666666666666666665555555443
No 83
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.27 E-value=26 Score=34.41 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
++.++..++.+..++++++..+-..+-
T Consensus 128 l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444444455555544444443
No 84
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.79 E-value=25 Score=27.71 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=48.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEK 226 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~ 226 (282)
+-.+|......+--+|+-|+...+.+...+..++.+.++..+.+..+...+..|+.++..+.-
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888889999999999999888888877766667777777777777776665543
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.38 E-value=30 Score=25.47 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 023459 73 VAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe 127 (282)
...|...|+.+++.++.++.+..+.-+-.+.++..|-..++-+-.++.++...+.
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467778889999999988888777666666665555555544444444444433
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.34 E-value=70 Score=30.58 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHhHHhHHHhh
Q 023459 171 KLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 171 kl~eke~ei~~Lk~~~e~L~~~l 193 (282)
.|.-++.-|.++..++..|+..+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555444
No 87
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.80 E-value=9.9 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=12.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 125 EVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.|+.+-.+|..++++|..|..++.+|
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444454444444
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.80 E-value=90 Score=30.46 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 023459 45 ENKEMKGTIKKL 56 (282)
Q Consensus 45 Ei~elkekI~~l 56 (282)
.+++++..+.++
T Consensus 101 ~LqeLe~~l~~l 112 (464)
T 1m1j_B 101 VLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 89
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.84 E-value=31 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKE 132 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e 132 (282)
.+++..+++..-.....+.+.+.....|..+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333333
No 90
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.78 E-value=17 Score=24.92 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=20.3
Q ss_pred HHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHH
Q 023459 86 RLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKE 132 (282)
Q Consensus 86 ~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e 132 (282)
.++..+.+....+...+.++......+......+..+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333444444444444444444444444444444433
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.73 E-value=22 Score=29.88 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhH
Q 023459 129 LKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 129 LE~e~~~~ek~i~~LE~kl~e 149 (282)
+..+...++-+...++.++..
T Consensus 101 l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 92
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=67.34 E-value=18 Score=25.09 Aligned_cols=33 Identities=3% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+..|..++..+..++..|...+..++++..++.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555554444
No 93
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.56 E-value=19 Score=26.68 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++..|+..+.-.+..|++++.-+..-...|..+..+++.|-.++..+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555555555444444
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.34 E-value=22 Score=26.32 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhHHh
Q 023459 173 DEKDREISGFKKKVDD 188 (282)
Q Consensus 173 ~eke~ei~~Lk~~~e~ 188 (282)
.+++.+|..|+.+.+.
T Consensus 50 ~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 50 DQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 95
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=66.04 E-value=34 Score=30.69 Aligned_cols=48 Identities=13% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 103 AEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 103 eEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.+|...|..+......+.+.++.|+.....+++.|..++.++..+
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555544
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.55 E-value=22 Score=26.35 Aligned_cols=6 Identities=0% Similarity=-0.125 Sum_probs=2.1
Q ss_pred HHHHhH
Q 023459 181 GFKKKV 186 (282)
Q Consensus 181 ~Lk~~~ 186 (282)
.|..++
T Consensus 46 ~L~~ql 51 (78)
T 3efg_A 46 RNAELI 51 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 97
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.51 E-value=18 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELER 145 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~ 145 (282)
..-++.+-..|++.|..+++.|..|++
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 98
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=62.04 E-value=24 Score=27.05 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 123 EREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 123 EkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
+..|.+|+.....++..+.+++...... + ..+...+..++.++..++..+...-.+.+
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e----~----------~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKE----K----------DNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777666554 2 44555556666666655555554444443
No 99
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.94 E-value=21 Score=23.76 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 127 DGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 127 e~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..||.+.+.++.+..+|+.++..|
T Consensus 6 ~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777
No 100
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=61.85 E-value=63 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHH
Q 023459 128 GLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 128 ~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.|..+++++++++..|+..+..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~ 32 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEI 32 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666666655555
No 101
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.73 E-value=26 Score=34.43 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
.++.++.+++.++.++..++..+-..+-
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344445555555555555554444443
No 102
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=61.67 E-value=1.1e+02 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHH
Q 023459 89 HDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEK 133 (282)
Q Consensus 89 ~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~ 133 (282)
..+......|+.+-++......++..+...++....-|.-.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~ 177 (373)
T 3hhm_B 133 TQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQC 177 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444444433
No 103
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.77 E-value=1e+02 Score=30.83 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=13.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 122 LEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 122 lEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++.|+.-..+....+...+-|+++...+
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~ 513 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKN 513 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444454444444
No 104
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.66 E-value=50 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=17.1
Q ss_pred HHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 110 RVLGEKGVKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 110 seIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
..+......+..+...+..++..+.+++..+.+|+
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555554444
No 105
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=60.64 E-value=1e+02 Score=28.22 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=10.7
Q ss_pred cccccccCCCchhhHHHHHH
Q 023459 18 EDFFDPDQDGSNNKVTELTK 37 (282)
Q Consensus 18 ~~W~dv~~~e~~~Ki~kL~~ 37 (282)
=.|+|+......+.+..|..
T Consensus 71 ~~Wi~l~~p~~~~e~~~l~~ 90 (363)
T 2iub_A 71 PTWINITGIHRTDVVQRVGE 90 (363)
T ss_dssp CEEEEEECTTCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 46888876542224444443
No 106
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=60.37 E-value=4.9 Score=24.08 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=5.3
Q ss_pred HhhhHhhhhhh
Q 023459 268 VTAAAVVCVCY 278 (282)
Q Consensus 268 ~~~~a~~~~~~ 278 (282)
++||-++|.++
T Consensus 15 v~aaVllylW~ 25 (26)
T 3j1r_A 15 VAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555543
No 107
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.08 E-value=1.4e+02 Score=29.71 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=11.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 164 VEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e 187 (282)
.++.|..+....+..|.+|.++++
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme 536 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKME 536 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.83 E-value=22 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+..|...+.....+|...+.-|..++..+.+.+..|..|...+...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555555555555443
No 109
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.66 E-value=42 Score=25.92 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=20.2
Q ss_pred hhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 160 KRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 160 ~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
-..|+-..+..+|.+....|+.|+..+-.+..-|.++
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555666666666666655555555544443
No 110
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=58.78 E-value=61 Score=25.06 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVK 118 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~e 118 (282)
+..|...+..+..-+......|+.++ +.|+.-.+.++ .+ +-++..+.-.++++......
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lk------e~~~q~~~~~E-~i--------------~vLk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLK------EEAEQHKIVME-TV--------------PVLKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHH-HH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777878777888777 22222222221 11 11233344455566655555
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 023459 119 LEELEREVDGLKKEKVESEKK 139 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~ 139 (282)
.+.+..+++.|......+..+
T Consensus 63 REkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 555555555554444444433
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.64 E-value=44 Score=24.97 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=14.0
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
++++..+.+-+..++..+..-+..++.++.++|..+
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555554443
No 112
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=58.04 E-value=5.4 Score=25.87 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=4.6
Q ss_pred hhHhhhhhhcc
Q 023459 270 AAAVVCVCYAR 280 (282)
Q Consensus 270 ~~a~~~~~~~~ 280 (282)
.++++|++|+|
T Consensus 27 i~~l~~~~~rr 37 (38)
T 2k1k_A 27 LLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHeec
Confidence 33444444433
No 113
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=57.81 E-value=16 Score=34.91 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHhHHhHHH
Q 023459 170 EKLDEKDREISGFKKKVDDLES 191 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~ 191 (282)
.++.+++.++.++..++..+-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 82 EEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 114
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=57.53 E-value=22 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH
Q 023459 107 ELKRVLGEKGVKLEELEREVDGLKKEKVESEKKV 140 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i 140 (282)
+++..+..+++.-..++++|..|++.|..++..+
T Consensus 21 klenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 4555555566666666667777777776666543
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.43 E-value=42 Score=26.18 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhcc--chhh------h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGN--CKSE------K--NSAEKTVKEMDERILLWQKEIEEAEKVIAGLKDKT 235 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~--~k~e------~--~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~ 235 (282)
..++.++++++++...|....+.|+.++.. ++-. + |-..-+......+ .++.+..+..=+..|+++.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~---~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR---LREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888877765 2111 1 4444444444333 2455555666666677654
Q ss_pred c
Q 023459 236 L 236 (282)
Q Consensus 236 ~ 236 (282)
.
T Consensus 92 ~ 92 (100)
T 1go4_E 92 R 92 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 116
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.32 E-value=43 Score=22.79 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Q 023459 176 DREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQK 219 (282)
Q Consensus 176 e~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~ 219 (282)
+..+..++..+..+...+...++.-.+....+..+-.+|..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333323333344444444444433
No 117
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=56.18 E-value=69 Score=28.29 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 170 EKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 170 ekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.++..++-.+......+..|......+
T Consensus 126 ~~v~~ld~~vt~~et~Isal~~DyVS~ 152 (242)
T 3c9i_A 126 TNVSALDGRVTTAENNISALQADYVSK 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBCBS
T ss_pred hhhhhhcccccccccchhhhhhhhhhh
Confidence 334455555556666666666666644
No 118
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=55.78 E-value=27 Score=25.82 Aligned_cols=49 Identities=12% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+++..+...|+.+.....-+-+.++++|.....+++-+..++.++..+
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777888888888888888888888777776655
No 119
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=55.77 E-value=17 Score=32.51 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
|.+.++..+..|.+++..+..+.......++.|+.++..+.+|+
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555666666666666653
No 120
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.96 E-value=76 Score=26.53 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGL 129 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~L 129 (282)
.++..+...+..+....+.+.+++..+...+...+.....++++=..|
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555566666667777777777776666654444
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.46 E-value=32 Score=32.60 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=16.8
Q ss_pred HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 112 LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 112 Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++.++.++..++.+...++..++.++..+.++.+++...
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 122
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.32 E-value=54 Score=32.55 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=4.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKVD 187 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~e 187 (282)
....+..-...+..+.......+.+-..++.+-..+++....|+. +..+--..+..|..++.+.+..+..|....+
T Consensus 354 ~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~----~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 429 (575)
T 2i1j_A 354 SQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE----TKNMEAAERQKLEDEIRAKQEEVSRIQQEVE 429 (575)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555521 1112223445555566665555555554443
No 123
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.79 E-value=1.6e+02 Score=28.23 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 120 EELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 120 eelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
.++..+|..++..+...+..|..|+..+
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344444445554444444444444443
No 124
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=53.38 E-value=77 Score=24.61 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH
Q 023459 79 ELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKV 140 (282)
Q Consensus 79 ~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i 140 (282)
+|+.++-+.|..|......+..-+.-+-.|..-+...+..-.+..+.+..|+.+|+.+..++
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776666554444555555555444444443333334444444444433333
No 125
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.02 E-value=74 Score=31.11 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhhcc
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESELGN 195 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l~~ 195 (282)
.++.++.+++.++.++..++..+-..+-+
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44455555555555555555555555444
No 126
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.61 E-value=27 Score=24.37 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.+..|..++..|+.+...+..+|..+..++..++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777777666666666665
No 127
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.54 E-value=30 Score=21.32 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLT 57 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le 57 (282)
.|..|+.+|+.|..+|..++=+|..++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555554443
No 128
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.18 E-value=78 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=16.0
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELERN 146 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE~k 146 (282)
..+.++...|+.|..+...++.-+.+++.+
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444555555555555555555555543
No 129
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.83 E-value=88 Score=24.82 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDG 128 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~ 128 (282)
..+..++..|....+. +...|..|.........++..+..+=+.
T Consensus 59 ~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 59 ILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6666666666665544 5555665655555555555554444333
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.29 E-value=30 Score=24.36 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|..+...|+.++..+..+|..++.++.-++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666655554
No 131
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.21 E-value=86 Score=24.49 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+..|......|..++..+...+..+...|.++..-...++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777775554444
No 132
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.12 E-value=20 Score=22.88 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023459 117 VKLEELEREVDGLKKEKVESEKKVRELE 144 (282)
Q Consensus 117 ~eIeelEkeIe~LE~e~~~~ek~i~~LE 144 (282)
.....+.++|+.|+.....++.+|+.||
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 4556777788888888888888877664
No 133
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.05 E-value=1.2e+02 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhHHHHHHH
Q 023459 107 ELKRVLGEKGVKLEELERE 125 (282)
Q Consensus 107 ~LkseIee~e~eIeelEke 125 (282)
+|-..+++++..|.++...
T Consensus 179 KF~~lLNeKK~KIR~lq~~ 197 (213)
T 1ik9_A 179 RFILVLNEKKTKIRSLHNK 197 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3566666666666665533
No 134
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=50.69 E-value=74 Score=28.48 Aligned_cols=30 Identities=0% Similarity=-0.061 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 35 LTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..++..+++++..+...+...+..+...+
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~ 97 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVAL 97 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666655555555555555444
No 135
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=49.60 E-value=1.4e+02 Score=26.64 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 023459 90 DLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEV 152 (282)
Q Consensus 90 dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~ 152 (282)
+.|.+.-....++.....+...++-+.=.-.=...+|..+..+|+.+..+-..+-.+|..+|.
T Consensus 143 e~I~~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 143 AAISSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp CGGGGSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444554444444444455555554444444444455555555555555555555555555543
No 136
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.43 E-value=31 Score=23.74 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~l 63 (282)
.+..|..+.+.|..++..+..++..+.+++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 577788888888888888887777777766543
No 137
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.28 E-value=73 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEK 115 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~ 115 (282)
.++..|..+|.......+.+..+-..|+...+.+
T Consensus 47 ~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 47 GHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544555555555555555443
No 138
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=48.34 E-value=32 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 102 GAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 102 reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
...++.++..|+.++..++++.......+..++.++..+++|+..+.-
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666777777777777777777788888888888888887754
No 139
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.26 E-value=37 Score=23.53 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|..++..|+.++..+..+|..+..++..++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444
No 140
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.87 E-value=60 Score=24.30 Aligned_cols=35 Identities=9% Similarity=0.366 Sum_probs=22.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchh
Q 023459 164 VEEEMREKLDEKDREISGFKKKVDDLESELGNCKS 198 (282)
Q Consensus 164 ~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~ 198 (282)
.--+|-.+++.+..+|..|+..++.+.-++..++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556677777777777777776666655554433
No 141
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=47.45 E-value=75 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
.+.|..+|..|+.++..+..+|..+.+++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677777777777777777777766664
No 142
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=46.85 E-value=6.5 Score=36.73 Aligned_cols=98 Identities=18% Similarity=0.101 Sum_probs=0.0
Q ss_pred chHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 163 RVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-----------NSAEKTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 163 g~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-----------~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
++++.+..-+..+...|...+.+...+...|.++++.- ..+...+......|..|++++..+.+-|.-.
T Consensus 116 ~d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~ 195 (346)
T 2nrj_A 116 GDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYY 195 (346)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Q ss_pred hccccccccccccccccCCCCccccccccchhhHHHHhhhHhhh
Q 023459 232 KDKTLDGVNGTARDVKLNGDGEEEDSRLNWQLPLAAVTAAAVVC 275 (282)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 275 (282)
..-...++.-+ ++++ .|.+++|+++|.+|
T Consensus 196 ~~~i~~~~~~~-------------~g~~--i~~~i~Ggi~a~~a 224 (346)
T 2nrj_A 196 KQLESDGFNVM-------------KGAI--LGLPIIGGIIVGVA 224 (346)
T ss_dssp GCCC--CCGGG-------------TSCE--EEEEETTTEEEEEE
T ss_pred HHHHhcccccc-------------ccce--ehhhhhhHHHHHHH
No 143
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=46.84 E-value=1.2e+02 Score=25.00 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q 023459 29 NNKVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAEL 108 (282)
Q Consensus 29 ~~Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~L 108 (282)
|..|..|...+..++.+..+...+++=+-.=+ ++++-...-+..|...-..++..+..++.+...-++.+...+..-
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML---~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEELEIVGNML---REEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 44688888888888888888877765544433 333333444557777777777777555544444444444433322
Q ss_pred HHH----------HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 109 KRV----------LGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 109 kse----------Iee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
... +.+++..+.+-...+++|-..|--+.+.+.+..-+..+
T Consensus 87 ~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E 137 (167)
T 4gkw_A 87 SQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAE 137 (167)
T ss_dssp HHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 22333444444444455555555555555554444333
No 144
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.14 E-value=91 Score=23.30 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSE 97 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~ 97 (282)
...|...+..+..+|..+...|+.+.-+...+. .+-+.+|.|+-.+.+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~----------~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV----------ERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhh
Confidence 345566666666666666666666665555554 7777777777665543
No 145
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=45.38 E-value=1.1e+02 Score=24.27 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQK 219 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~ 219 (282)
.+.+++.+.++....-|+.
T Consensus 95 ~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 95 SEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444443
No 146
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.64 E-value=58 Score=25.59 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=9.7
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKK 131 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~ 131 (282)
+-=.++-+++.+++.+.....+..
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~R 51 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRR 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 147
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.34 E-value=1.8e+02 Score=26.21 Aligned_cols=9 Identities=11% Similarity=-0.045 Sum_probs=5.3
Q ss_pred ccccccCCC
Q 023459 19 DFFDPDQDG 27 (282)
Q Consensus 19 ~W~dv~~~e 27 (282)
.|+|+....
T Consensus 51 vWIdl~~Pt 59 (339)
T 4ev6_A 51 IWIDCYDPK 59 (339)
T ss_dssp EEEEEESCC
T ss_pred EEEEeCCCC
Confidence 377766543
No 148
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=44.29 E-value=72 Score=24.68 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 56 LTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVT 93 (282)
Q Consensus 56 le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~ 93 (282)
++.+|..+..+...|+.|..++..|+..+--+..+|..
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666655554444
No 149
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.39 E-value=10 Score=25.42 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=5.2
Q ss_pred HhhhhhhcccC
Q 023459 272 AVVCVCYARCR 282 (282)
Q Consensus 272 a~~~~~~~~~~ 282 (282)
+++.++|+|||
T Consensus 27 ~~~~~~~~RRR 37 (44)
T 2l2t_A 27 GLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 34444555544
No 150
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.85 E-value=76 Score=24.57 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLV 92 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~ 92 (282)
.+|...+..... +++.+|+.++.+|..+..-...+..+-.++.-|..++......|+
T Consensus 39 arLc~~Vd~t~~---eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~yL 95 (96)
T 1t3j_A 39 ARLCQQVDMTQK---HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQFL 95 (96)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444332 345566666666666666666666777889999999998887764
No 151
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.71 E-value=35 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=20.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLE 190 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~ 190 (282)
++|...++.++.+|..|+++..+|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5678889999999999998877764
No 152
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=42.57 E-value=91 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 34 ELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 34 kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
.+..++..+++.+..++..+...+..+...+
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443
No 153
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=42.35 E-value=59 Score=21.91 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhhh
Q 023459 82 IEVSRLQHDLVTSM 95 (282)
Q Consensus 82 ee~~~~q~dl~~~~ 95 (282)
++..++..++.+..
T Consensus 19 Tr~ArLlae~~ssq 32 (46)
T 3swy_A 19 TRFARLLAEYNATQ 32 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 154
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.30 E-value=67 Score=22.43 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 33 TELTKKVESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 33 ~kL~~eI~~LE~Ei~elkekI~~le~eIe~l 63 (282)
..|..++..|+.+...+..+|..+..++..+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 155
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.26 E-value=11 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=5.6
Q ss_pred hHhhhhhhcccC
Q 023459 271 AAVVCVCYARCR 282 (282)
Q Consensus 271 ~a~~~~~~~~~~ 282 (282)
.+++.++|.|||
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 334444555544
No 156
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.14 E-value=41 Score=27.15 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHHHHHHhH-HhHHHhhccchhhh--hhhH
Q 023459 128 GLKKEKVESEKKVRELERNVGLLEVREMEEKSKRVRVEEEMREKLDEKDREISGFKKKV-DDLESELGNCKSEK--NSAE 204 (282)
Q Consensus 128 ~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~~~gg~keelrekl~eke~ei~~Lk~~~-e~L~~~l~~~k~e~--~~~e 204 (282)
.++.+++.+..++..+..++.....+.- ...=.+...+++.+..+|..|+... ..|..+-+++.+-| +..+
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd------~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iT 80 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEA------ADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAIT 80 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTC------TTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCcccccc
Confidence 4567788888888888888888743111 1112334444445555555554332 23333444444444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 205 KTVKEMDERILLWQKEIEEAEKVIAGL 231 (282)
Q Consensus 205 ~~~~~~e~~I~~l~~e~~e~~~~~~~~ 231 (282)
+.-+. -...+.|-+.||
T Consensus 81 K~EQA----------DmGkLKKSVrGL 97 (123)
T 2lf0_A 81 KKEQA----------DMGKLKKSVRGL 97 (123)
T ss_dssp HHHHH----------THHHHHHHTTSC
T ss_pred HHHHH----------hHHHHhhcccce
Confidence 33221 244566666666
No 157
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.08 E-value=39 Score=33.53 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 023459 75 ARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRV 111 (282)
Q Consensus 75 ~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~Lkse 111 (282)
.++.+|.+++..++..-..-.....++.+++..|...
T Consensus 363 ~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 363 DMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666553333223333444444444443
No 158
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=41.70 E-value=1.3e+02 Score=24.03 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKL---TIEIEGSE 64 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~l---e~eIe~lr 64 (282)
++..|...+..|..++..+...+..+ ...+.++.
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~ 46 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVR 46 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777 66666555
No 159
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.09 E-value=82 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 023459 77 AEELEIEVSRLQ 88 (282)
Q Consensus 77 ~~~L~ee~~~~q 88 (282)
.+-|...+.++.
T Consensus 5 naylrkkiarlk 16 (52)
T 3he5_B 5 NAYLRKKIARLK 16 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 333334444433
No 160
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.90 E-value=36 Score=21.87 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLK 130 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE 130 (282)
.+|...++++-..-..++.++..|+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444333333333333333
No 161
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=39.21 E-value=1.3e+02 Score=23.29 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
-...+..+..++.....++..+...+..+......+...+..+......+
T Consensus 52 q~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 52 QLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777777777777777777777777777777777666665
No 162
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.84 E-value=1.1e+02 Score=29.33 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 023459 207 VKEMDERILLWQKEIEEAEKVIAGLKDKTLDGV 239 (282)
Q Consensus 207 ~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~ 239 (282)
++.++..+..+..++.. ..-+|-+-.-+.|
T Consensus 85 ~~~~~~~~~~~~~~~~~---~~~~ipN~~~~~v 114 (455)
T 2dq0_A 85 IGELENEVEELKKKIDY---YLWRLPNITHPSV 114 (455)
T ss_dssp HHHHHHHHHHHHHHHHH---HHTTSCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHH---HHHhCCCCCCccC
Confidence 33444444444444333 3334444444444
No 163
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.58 E-value=93 Score=21.28 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDK 67 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~ 67 (282)
++..|..++..|-..+..+.+-+.....+|..+++++
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777444
No 164
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=38.28 E-value=17 Score=23.15 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.4
Q ss_pred hhhccc
Q 023459 276 VCYARC 281 (282)
Q Consensus 276 ~~~~~~ 281 (282)
++|+||
T Consensus 34 ~~~~rR 39 (41)
T 2k9y_A 34 FFIHRR 39 (41)
T ss_dssp HSSSSS
T ss_pred eeEeee
Confidence 344443
No 165
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.03 E-value=74 Score=29.54 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 106 AELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 106 ~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.++..++..++..+......|..|+..+..++.+|..|+.++..+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555556665555555666655555555
No 166
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.97 E-value=81 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
|..+..++..|+.+...++..+..++..+..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555444444
No 167
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.65 E-value=1e+02 Score=21.53 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+..++.....|+.+...+..+|..|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333
No 168
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.60 E-value=1.1e+02 Score=27.37 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 023459 42 LELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~ 62 (282)
+..++...+..+......+..
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVA 88 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 169
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.15 E-value=1.5e+02 Score=23.19 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHhh
Q 023459 48 EMKGTIKKLTIEIE 61 (282)
Q Consensus 48 elkekI~~le~eIe 61 (282)
++-+.+-.+..++.
T Consensus 10 ~~~~~~~~~~~~~~ 23 (114)
T 2xzr_A 10 EILSKIYHIENEIA 23 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHH
Confidence 33333333333333
No 170
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=36.83 E-value=2e+02 Score=24.68 Aligned_cols=36 Identities=6% Similarity=0.175 Sum_probs=20.3
Q ss_pred hHHHHHHhHHHHHHH-HHHHHHhHHhHHHhhccchhh
Q 023459 164 VEEEMREKLDEKDRE-ISGFKKKVDDLESELGNCKSE 199 (282)
Q Consensus 164 ~keelrekl~eke~e-i~~Lk~~~e~L~~~l~~~k~e 199 (282)
.+.+-...+...+.. -..+...++.+-..++.+...
T Consensus 191 a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~ 227 (305)
T 2efl_A 191 SKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEER 227 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555 445556666666655555444
No 171
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.27 E-value=1.6e+02 Score=23.22 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 123 EREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 123 EkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
..+|+.|+.++...+.++..-.+||...
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdA 61 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666555
No 172
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.93 E-value=3.3e+02 Score=26.91 Aligned_cols=11 Identities=0% Similarity=-0.248 Sum_probs=5.1
Q ss_pred ccccccccccc
Q 023459 237 DGVNGTARDVK 247 (282)
Q Consensus 237 ~~~~~~~~~~~ 247 (282)
+...|++-+-|
T Consensus 532 K~kkG~ETGNW 542 (602)
T 1cii_A 532 EFGKAVRTENW 542 (602)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHhhcCCCc
Confidence 33445554444
No 173
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.78 E-value=1e+02 Score=21.21 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 119 LEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 119 IeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+..++.....|+.....+...|..|...+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433333
No 174
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.62 E-value=57 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhh
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGL 129 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~L 129 (282)
|.+|+..++++-.....++.++..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444444333
No 175
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=35.57 E-value=1.8e+02 Score=23.56 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
...|+.++.++..++..++..+..+.
T Consensus 8 ~~~l~~KvAElekkv~~lek~lk~~~ 33 (125)
T 2pms_C 8 EVAPQAKIAELENQVHRLEQELKEID 33 (125)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777777777777777666666
No 176
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.18 E-value=1.5e+02 Score=22.57 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMK 50 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elk 50 (282)
+..|....+.|+..+.+++
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E 32 (95)
T 3mov_A 14 YFQGQKESRACLERIQELE 32 (95)
T ss_dssp ----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444333333
No 177
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.10 E-value=99 Score=25.05 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
+..++..+.++-..+..+...|+.+-..+....+....|+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lE 43 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLE 43 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHH
Confidence 4455556666666666666666665555555443334444
No 178
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.86 E-value=1.5e+02 Score=22.36 Aligned_cols=29 Identities=7% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
+.+...+..++.++..|..++..+..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555555443
No 179
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.77 E-value=1.4e+02 Score=21.96 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhhccch---hhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023459 169 REKLDEKDREISGFKKKVDDLESELGNCK---SEK---NSAEKTVKEMDERILLWQKEIEEAE 225 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l~~~k---~e~---~~~e~~~~~~e~~I~~l~~e~~e~~ 225 (282)
..+++.+...|..|..++..|...+.+-. +.+ ..+..++..++..+..+-.+=-+++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888887532 221 4555555666555555555444443
No 180
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.46 E-value=1.2e+02 Score=25.37 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 023459 37 KKVESLELENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEI 82 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~e 82 (282)
.++..|+.+.......|+.....+..+..+..++..+-.|...++.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888999999999999999999988888888774
No 181
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.41 E-value=1.5e+02 Score=22.24 Aligned_cols=60 Identities=10% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHhhccch--hhh-hhhHHHHHHHHHHHHH-HHHHHHHH
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESELGNCK--SEK-NSAEKTVKEMDERILL-WQKEIEEA 224 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k--~e~-~~~e~~~~~~e~~I~~-l~~e~~e~ 224 (282)
-++-+..+.+.+..+.+...-+.++..++.++. ... ...+.++..-.+.+.. ++.+++.+
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777777663 221 4555666666666666 65555544
No 182
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=33.21 E-value=2.9e+02 Score=25.44 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSEED 66 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~ 66 (282)
+..|....+.+-..+..+......++.+|..+...
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ 39 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR 39 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666633
No 183
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=33.14 E-value=3.5e+02 Score=26.34 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.8
Q ss_pred hcccchhHHHHHHH
Q 023459 95 MSEGDELGAEVAEL 108 (282)
Q Consensus 95 ~s~~~e~reEm~~L 108 (282)
.+..++.+..|..+
T Consensus 136 ~~~~~~s~~mle~~ 149 (461)
T 3ghg_B 136 ENVVNEYSSELEKH 149 (461)
T ss_dssp HHTTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444433
No 184
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=33.09 E-value=1.7e+02 Score=22.79 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEG 62 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~ 62 (282)
+++.+-..+-.++.+..-+..-|-.+...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~ 38 (114)
T 2xzr_A 7 KIEEILSKIYHIENEIARIKKLIGAIDGRVTR 38 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhHHHHh
Confidence 55555555555666655555555555555543
No 185
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.08 E-value=72 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023459 129 LKKEKVESEKKVRELERN 146 (282)
Q Consensus 129 LE~e~~~~ek~i~~LE~k 146 (282)
|++++..++.++..|.+.
T Consensus 21 LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 186
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=32.79 E-value=1.6e+02 Score=22.32 Aligned_cols=58 Identities=3% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKEIEE 223 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e~~e 223 (282)
++-+..+.+.+..+.+..+-+.++..++..+-... ...+.++..-.+.+..++.+++.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777777763222 45556666666666666555444
No 187
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=32.09 E-value=2.8e+02 Score=26.40 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
.+-+..+...+..-..+...+..+-..++++
T Consensus 206 ~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 206 EKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333444444444444433
No 188
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.95 E-value=1.2e+02 Score=26.84 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 023459 42 LELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 42 LE~Ei~elkekI~~le~eIe~lr 64 (282)
++.++..++..+..++..+..++
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~ 89 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAE 89 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 189
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.73 E-value=69 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 39 VESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
|..|+.++..+......+..+...|+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444334444444444
No 190
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.54 E-value=53 Score=19.49 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023459 38 KVESLELENKEMKGTIKKL 56 (282)
Q Consensus 38 eI~~LE~Ei~elkekI~~l 56 (282)
+-..|++.|..++.+|.++
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 3444455555555554443
No 191
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.34 E-value=1.8e+02 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023459 37 KKVESLELENKEMKGTIKKLTIEI 60 (282)
Q Consensus 37 ~eI~~LE~Ei~elkekI~~le~eI 60 (282)
+.++....-...+...+..+...+
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 192
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.27 E-value=87 Score=20.06 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLK 130 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE 130 (282)
|.+|+..++++-..-..++.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444444444444444333
No 193
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.19 E-value=49 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023459 32 VTELTKKVESLELENKEMKGTIK 54 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~ 54 (282)
|.+|+.+-+-|.++|..+.-+|.
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 194
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.15 E-value=67 Score=24.30 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 023459 218 QKEIEEAEKVI 228 (282)
Q Consensus 218 ~~e~~e~~~~~ 228 (282)
..++..+..++
T Consensus 63 ~~E~~~Lr~ll 73 (87)
T 1hjb_A 63 SRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.01 E-value=2e+02 Score=28.09 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHH
Q 023459 44 LENKEMKGTIKKLTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELE 123 (282)
Q Consensus 44 ~Ei~elkekI~~le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelE 123 (282)
.++-++..+.+.+..+++.++.++.++. .++..+.. .-...+++.+++..|+..+..++..+.+++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~s----------k~i~~~k~----~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQ----------KEIGKRFK----AKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhc----CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444444 33332211 111234556666667777777777777776
Q ss_pred HHHhhh
Q 023459 124 REVDGL 129 (282)
Q Consensus 124 keIe~L 129 (282)
.++..+
T Consensus 99 ~~~~~~ 104 (485)
T 3qne_A 99 KNLRSK 104 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 196
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.90 E-value=4e+02 Score=26.34 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.1
Q ss_pred hHHHhh
Q 023459 188 DLESEL 193 (282)
Q Consensus 188 ~L~~~l 193 (282)
.+-.++
T Consensus 451 kIAkEL 456 (602)
T 1cii_A 451 QLAREM 456 (602)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 197
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.40 E-value=82 Score=21.78 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHHHHHHhHHhHHHhhc
Q 023459 169 REKLDEKDREISGFKKKVDDLESELG 194 (282)
Q Consensus 169 rekl~eke~ei~~Lk~~~e~L~~~l~ 194 (282)
..+...+..++..|..++..|..++.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 198
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.84 E-value=1.4e+02 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 82 IEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 82 ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
.-+..-++.|..-...+++..+++ ...+.+.-+.+ ..+++.|......+++.+..|+..+
T Consensus 149 ~y~~~~Y~~fl~~~d~~~~~~~e~---~~~~~~~~n~~---~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 149 DYTIKCYESFMSGADSFDEMNAEL---QSKLKDLFNVD---AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHH---HHHHHHHHTCC---TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcchhHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777655555544443 33333222111 2334444444444444444444433
No 199
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.58 E-value=3.6e+02 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 023459 32 VTELTKKVESLEL--ENKEMKGTIKKLTIEI 60 (282)
Q Consensus 32 i~kL~~eI~~LE~--Ei~elkekI~~le~eI 60 (282)
+..|..++..+.. .+..+..++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 11 IQDLTERSDVLRGYLDYDAKKERLEEVNAEL 41 (365)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4444444443333 2333344444444433
No 200
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.44 E-value=1.1e+02 Score=20.28 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
+..+..+-..|+.++..+..+++.+...+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554443
No 201
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.42 E-value=3.1e+02 Score=24.57 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=5.4
Q ss_pred hhHhhhhhhccc
Q 023459 270 AAAVVCVCYARC 281 (282)
Q Consensus 270 ~~a~~~~~~~~~ 281 (282)
.++++|++++|+
T Consensus 325 ~~~~~~~~fkrk 336 (339)
T 4ev6_A 325 IIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 344444444443
No 202
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.30 E-value=1.7e+02 Score=21.44 Aligned_cols=6 Identities=67% Similarity=0.628 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023459 38 KVESLE 43 (282)
Q Consensus 38 eI~~LE 43 (282)
..+.|+
T Consensus 9 ~~~sLE 14 (84)
T 1gk4_A 9 TNESLE 14 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 203
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.98 E-value=84 Score=20.75 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 125 EVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 125 eIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..|+.+...+++++..|..++..+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777655
No 204
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.91 E-value=4.2e+02 Score=25.94 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023459 73 VAARAEELEIEVSRLQH 89 (282)
Q Consensus 73 i~~r~~~L~ee~~~~q~ 89 (282)
|..|=..|...+..++.
T Consensus 63 v~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344455555555544
No 205
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.84 E-value=1.5e+02 Score=28.08 Aligned_cols=24 Identities=8% Similarity=0.328 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 201 NSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 201 ~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
.....+++.++..+..+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 78 KELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 206
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.77 E-value=1.4e+02 Score=20.44 Aligned_cols=31 Identities=3% Similarity=0.109 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 023459 104 EVAELKRVLGEKGVKLEELEREVDGLKKEKV 134 (282)
Q Consensus 104 Em~~LkseIee~e~eIeelEkeIe~LE~e~~ 134 (282)
.|..|.+.+..+...+..+..++..+...+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 207
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=28.37 E-value=87 Score=18.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHH
Q 023459 128 GLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 128 ~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.|+++-..++.++..|+.++..+
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555
No 208
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=28.25 E-value=1.1e+02 Score=19.07 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTI 58 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~ 58 (282)
++..++.+-+..+.+++.++++|..++-
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777778788777777766543
No 209
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=28.14 E-value=3.1e+02 Score=24.16 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
++..+..-+..|...+..|..++.++...+..|..|..++..+
T Consensus 89 ~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~l 131 (242)
T 3c9i_A 89 LRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSAL 131 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhh
Confidence 3333333333444444444444444444444444444443333
No 210
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.12 E-value=2.5e+02 Score=23.10 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023459 39 VESLELENKEMKGTIKKLTI 58 (282)
Q Consensus 39 I~~LE~Ei~elkekI~~le~ 58 (282)
|+.|++....+..+++....
T Consensus 13 ia~L~~D~~s~~~eleEnqe 32 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQE 32 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 211
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.08 E-value=2.9e+02 Score=25.96 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHH
Q 023459 129 LKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 129 LE~e~~~~ek~i~~LE~kl~el 150 (282)
++.++..++..+..++.+|..+
T Consensus 74 a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 74 AKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544444
No 212
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=27.09 E-value=1.7e+02 Score=22.85 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=3.9
Q ss_pred HHhhhHHHHHH
Q 023459 125 EVDGLKKEKVE 135 (282)
Q Consensus 125 eIe~LE~e~~~ 135 (282)
+--.|+.+...
T Consensus 64 EKYDlE~kv~k 74 (107)
T 1ytz_T 64 EKYDFAEQIKR 74 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHh
Confidence 33333333333
No 213
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.88 E-value=1.9e+02 Score=27.30 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=4.0
Q ss_pred hhhccccccc
Q 023459 230 GLKDKTLDGV 239 (282)
Q Consensus 230 ~~~~~~~~~~ 239 (282)
.|-+-.-+.|
T Consensus 100 ~ipN~~~~~v 109 (421)
T 1ses_A 100 QVPLPPWPGA 109 (421)
T ss_dssp TCCCCCCTTS
T ss_pred hCCCCCCCCC
Confidence 3444343433
No 214
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.67 E-value=1.2e+02 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023459 36 TKKVESLELENKEMKGTIKKLTIEIEGS 63 (282)
Q Consensus 36 ~~eI~~LE~Ei~elkekI~~le~eIe~l 63 (282)
..+...|+.+...++.+|..+..++..+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 215
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.62 E-value=92 Score=19.95 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=6.0
Q ss_pred HHHHHHhHHhHHHhh
Q 023459 179 ISGFKKKVDDLESEL 193 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l 193 (282)
..+|+.++..|+.-+
T Consensus 17 ~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 17 LWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 333444444444333
No 216
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.47 E-value=87 Score=21.42 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023459 35 LTKKVESLELENKEMKGTIKKL 56 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~l 56 (282)
|+.++..|+.++..+..++..+
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 217
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.33 E-value=96 Score=22.90 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHHHHHhHHhHHHhhccc
Q 023459 168 MREKLDEKDREISGFKKKVDDLESELGNC 196 (282)
Q Consensus 168 lrekl~eke~ei~~Lk~~~e~L~~~l~~~ 196 (282)
+.....++..++..|+.++..|..++..+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555444443
No 218
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.13 E-value=1.2e+02 Score=22.95 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=4.2
Q ss_pred CCCCCcccc
Q 023459 12 VDDQTTEDF 20 (282)
Q Consensus 12 ~~~~~~~~W 20 (282)
++...++||
T Consensus 9 ~dk~d~~Y~ 17 (87)
T 1hjb_A 9 VDKHSDEYK 17 (87)
T ss_dssp -CTTSHHHH
T ss_pred cCcccHHHH
Confidence 344445566
No 219
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.56 E-value=91 Score=24.44 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 179 ISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEAEKVIAG 230 (282)
Q Consensus 179 i~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~~~~~~~ 230 (282)
..+|+.....|+..+..+.+++=+++.++....-.|.+|..++.++.|+...
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf~Kp 95 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKVSKT 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhcCccCC
No 220
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.05 E-value=80 Score=22.16 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 023459 133 KVESEKKVRELERNVGLL 150 (282)
Q Consensus 133 ~~~~ek~i~~LE~kl~el 150 (282)
.+.++.+++.|+.+...+
T Consensus 4 vkaleekvkaleekvkal 21 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKAL 21 (67)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 455666666777766666
No 221
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.86 E-value=2.1e+02 Score=21.19 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 115 KGVKLEELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 115 ~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
+-..++++..+..-|..++..+......++.++
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 222
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.80 E-value=70 Score=20.17 Aligned_cols=21 Identities=33% Similarity=0.210 Sum_probs=8.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHh
Q 023459 107 ELKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 107 ~LkseIee~e~eIeelEkeIe 127 (282)
+|+..++++-.+-..++.++.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 344444433333333333333
No 223
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.58 E-value=39 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=11.8
Q ss_pred hhhHHHHhhhHhhhhhh
Q 023459 262 QLPLAAVTAAAVVCVCY 278 (282)
Q Consensus 262 ~~~~~~~~~~a~~~~~~ 278 (282)
-|.|+|+.+|-+.|+.|
T Consensus 5 iweviaglvalltflaf 21 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAF 21 (32)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48899987776655543
No 224
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.55 E-value=1.9e+02 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=16.5
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 113 GEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 113 ee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
+-++..++.+...++.++..+..+..++..+...+..+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443
No 225
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.42 E-value=2.4e+02 Score=23.77 Aligned_cols=60 Identities=7% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023459 165 EEEMREKLDEKDREISGFKKKVDDLESELGNCKSEKNSAEKTVKEMDERILLWQKEIEEA 224 (282)
Q Consensus 165 keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~~~~e~~~~~~e~~I~~l~~e~~e~ 224 (282)
+++++.-.++-...+..|+.++...+.++..+-..+.--+.+|..+-.+|.+++.++...
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
No 226
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.37 E-value=1.3e+02 Score=19.83 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023459 135 ESEKKV 140 (282)
Q Consensus 135 ~~ek~i 140 (282)
+++.+|
T Consensus 21 eLEerv 26 (42)
T 2oqq_A 21 ELEERL 26 (42)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 227
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.16 E-value=2.4e+02 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh-hhhHHHHHHHHHHHHHHHHH
Q 023459 166 EEMREKLDEKDREISGFKKKVDDLESELGNCKSEK-NSAEKTVKEMDERILLWQKE 220 (282)
Q Consensus 166 eelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~-~~~e~~~~~~e~~I~~l~~e 220 (282)
++-+..+.+.+..+.+..+-+.++..++.++-... ...+.++..-.+.+..++.+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444566666666666666666666666553221 34444555555544444443
No 228
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.07 E-value=1.1e+02 Score=21.38 Aligned_cols=7 Identities=57% Similarity=0.738 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023459 82 IEVSRLQ 88 (282)
Q Consensus 82 ee~~~~q 88 (282)
.++..+.
T Consensus 51 ~ev~~Lr 57 (63)
T 2dgc_A 51 NEVARLK 57 (63)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 229
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.04 E-value=1.2e+02 Score=26.43 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=11.4
Q ss_pred cchhHHHHHHHHHHHhhhhhhHHH
Q 023459 98 GDELGAEVAELKRVLGEKGVKLEE 121 (282)
Q Consensus 98 ~~e~reEm~~LkseIee~e~eIee 121 (282)
.+.+++++..+-+++.++...+++
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~ 55 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNT 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554444444
No 230
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.84 E-value=88 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhh
Q 023459 105 VAELKRVLGEKGVKLEELEREVDG 128 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~ 128 (282)
|.+|+..++.+-..-..++.++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444443443333333
No 231
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.84 E-value=4.8e+02 Score=24.91 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023459 82 IEVSRLQH 89 (282)
Q Consensus 82 ee~~~~q~ 89 (282)
+-+..++.
T Consensus 59 ~~v~~ik~ 66 (411)
T 3ghg_C 59 QLIKAIQL 66 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333334
No 232
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.78 E-value=3.6e+02 Score=26.25 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023459 43 ELENKEMKGTIKKLTIEIEGSEEDKRILE 71 (282)
Q Consensus 43 E~Ei~elkekI~~le~eIe~lr~~~~~le 71 (282)
-.++-++..+.+.+..+++.++..+.++.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~s 64 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICS 64 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666665554444
No 233
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=23.70 E-value=2.6e+02 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 023459 203 AEKTVKEMDERILLWQKEIEEAEKVIAGLKDKTLDGV 239 (282)
Q Consensus 203 ~e~~~~~~e~~I~~l~~e~~e~~~~~~~~~~~~~~~~ 239 (282)
+..-+.++..+|..|..+++....++.+|+...-+.+
T Consensus 84 ~~~~l~~lD~ei~sLkrqIq~~kQ~~~~L~~~~~~~I 120 (235)
T 2iw5_B 84 ATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGI 120 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677888888888888888888888877765544
No 234
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=23.61 E-value=28 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHH
Q 023459 128 GLKKEKVESEKKVRELERNVGLLE 151 (282)
Q Consensus 128 ~LE~e~~~~ek~i~~LE~kl~ele 151 (282)
.|+.++..++.+-..-++++..+|
T Consensus 4 aleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 4 ALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555543
No 235
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.56 E-value=4.9e+02 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHhHHHhhc
Q 023459 177 REISGFKKKVDDLESELG 194 (282)
Q Consensus 177 ~ei~~Lk~~~e~L~~~l~ 194 (282)
..|..|+..+..|.....
T Consensus 119 ~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 119 QKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344445555555554443
No 236
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.38 E-value=2.5e+02 Score=23.27 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhhcccch
Q 023459 35 LTKKVESLELENKEMKGTIKK--LTIEIEGSEEDKRILESVAARAEELEIEVSRLQHDL------------VTSMSEGDE 100 (282)
Q Consensus 35 L~~eI~~LE~Ei~elkekI~~--le~eIe~lr~~~~~le~i~~r~~~L~ee~~~~q~dl------------~~~~s~~~e 100 (282)
|...+..++.-+......+.. ....+..+......|+ .+..-.+... .+-....+.
T Consensus 8 le~~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~----------~e~~i~eas~~~~~~~~le~~~~~l~rdlea 77 (146)
T 2xnx_M 8 LEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKA----------LELAIDQASQDYNRANVLEKELEAITREQEI 77 (146)
T ss_dssp TTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTTHHHHTTTTTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 101 LGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 101 ~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
.++....+...+..+...+..++.+...|+....-++-....|.+.|..
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeA 126 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDA 126 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 237
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.37 E-value=2.8e+02 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNV 147 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl 147 (282)
.+..+...|..+++.++..+..++.++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 238
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.19 E-value=1.8e+02 Score=19.76 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
.+.+|+..|..|+.++..-+.+...+...++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666666666666655555555555444
No 239
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.15 E-value=28 Score=25.45 Aligned_cols=8 Identities=25% Similarity=-0.018 Sum_probs=4.3
Q ss_pred ccchhhHH
Q 023459 259 LNWQLPLA 266 (282)
Q Consensus 259 ~~~~~~~~ 266 (282)
+.+.||++
T Consensus 3 l~~~~p~~ 10 (70)
T 2klu_A 3 LVPRGSMA 10 (70)
T ss_dssp SSCCCSSH
T ss_pred cchhhHHH
Confidence 34566654
No 240
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.85 E-value=87 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023459 32 VTELTKKVESLELENKEMKGTIKKLTIEIEGSE 64 (282)
Q Consensus 32 i~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr 64 (282)
+..|..++..|..++..+...++.+..+|..++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 241
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.45 E-value=2.9e+02 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIE 61 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe 61 (282)
.|.+|..++...|..+-....++...+...+
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e 53 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYE 53 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999988888887776554
No 242
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.35 E-value=2.7e+02 Score=21.41 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 023459 80 LEIEVSRLQHDLVTSMSEGDELGAEVAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKVRELERNVGLLEVREMEEKS 159 (282)
Q Consensus 80 L~ee~~~~q~dl~~~~s~~~e~reEm~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i~~LE~kl~ele~~~~~~~~ 159 (282)
|-..+.+++..+.. =+.--+.+-....+++.-+..|+..-..-++.|++++.++.+. +
T Consensus 2 lan~La~le~sLe~--------------EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~----L---- 59 (101)
T 1d7m_A 2 MANRLAGLENSLES--------------EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET----L---- 59 (101)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----
T ss_pred HhHHHHHHHHHhhh--------------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----
Q ss_pred hhhchHHHHHHhHHHHHHHHHHHHHhHHhHHHhhccchhhh
Q 023459 160 KRVRVEEEMREKLDEKDREISGFKKKVDDLESELGNCKSEK 200 (282)
Q Consensus 160 ~~gg~keelrekl~eke~ei~~Lk~~~e~L~~~l~~~k~e~ 200 (282)
-|+..+--.+++ ++.-+....+....|+..+++..|++
T Consensus 60 --k~l~~EklAkld-LE~RLsKtEKDkAiLELkLaE~~Dek 97 (101)
T 1d7m_A 60 --KNLELEKLARME-LEARLAKTEKDRAILELKLAEAIDEK 97 (101)
T ss_dssp --HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HcccHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHhhhhh
No 243
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.31 E-value=1e+02 Score=18.63 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhHHHhh
Q 023459 167 EMREKLDEKDREISGFKKKVDDLESEL 193 (282)
Q Consensus 167 elrekl~eke~ei~~Lk~~~e~L~~~l 193 (282)
++..-+..++.+.++|+.+++.|-.+.
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777778888888877776544
No 244
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.22 E-value=2.4e+02 Score=20.74 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH
Q 023459 105 VAELKRVLGEKGVKLEELEREVDGLKKEKVESEKKV 140 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~LE~e~~~~ek~i 140 (282)
+..|+..+.-.....+.+..+|=++--+-.-++.++
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 333444444444444444444444443333333333
No 245
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.21 E-value=5.1e+02 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023459 208 KEMDERILLWQKEIEEAEKVIAGLKDK 234 (282)
Q Consensus 208 ~~~e~~I~~l~~e~~e~~~~~~~~~~~ 234 (282)
..++..+..++..+..+...|..|..+
T Consensus 108 ~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 108 QQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 246
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.75 E-value=1e+02 Score=19.49 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHh
Q 023459 105 VAELKRVLGEKGVKLEELEREVD 127 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe 127 (282)
|++|+..++.+-..-.+++++..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444333333333333
No 247
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.72 E-value=1.5e+02 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023459 31 KVTELTKKVESLELENKEMKGTIKKLTIEIEGSEED 66 (282)
Q Consensus 31 Ki~kL~~eI~~LE~Ei~elkekI~~le~eIe~lr~~ 66 (282)
++..|+.+++.|+.+-+.+..-|..+...+..+..+
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 678888888888888888888888888877777744
No 248
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.65 E-value=2.5e+02 Score=20.84 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=15.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 023459 124 REVDGLKKEKVESEKKVRELERNVGLL 150 (282)
Q Consensus 124 keIe~LE~e~~~~ek~i~~LE~kl~el 150 (282)
.+|..|+.++...+.++..-.+||...
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA 31 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDA 31 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555555554
No 249
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.59 E-value=1.7e+02 Score=27.73 Aligned_cols=18 Identities=6% Similarity=0.137 Sum_probs=7.5
Q ss_pred HHHhHHhHHHhhccchhh
Q 023459 182 FKKKVDDLESELGNCKSE 199 (282)
Q Consensus 182 Lk~~~e~L~~~l~~~k~e 199 (282)
....+..|+..+++++..
T Consensus 43 ~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 43 SNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 334444444444444333
No 250
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.45 E-value=5.8e+02 Score=24.97 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=11.4
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHHHHHH
Q 023459 108 LKRVLGEKGVKLEELEREVDGLKKEKVE 135 (282)
Q Consensus 108 LkseIee~e~eIeelEkeIe~LE~e~~~ 135 (282)
|+..|.-++..|...-..|.-|...+..
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333333333
No 251
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=21.21 E-value=45 Score=24.90 Aligned_cols=11 Identities=45% Similarity=0.927 Sum_probs=6.9
Q ss_pred hhHhhhhhhcc
Q 023459 270 AAAVVCVCYAR 280 (282)
Q Consensus 270 ~~a~~~~~~~~ 280 (282)
|....|+||-|
T Consensus 29 ~li~gcwcylr 39 (90)
T 1zza_A 29 ALILGCWCYLR 39 (90)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHHHH
Confidence 33456788865
No 252
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.94 E-value=2.1e+02 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=12.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q 023459 121 ELEREVDGLKKEKVESEKKVRELERNVGL 149 (282)
Q Consensus 121 elEkeIe~LE~e~~~~ek~i~~LE~kl~e 149 (282)
++-..+..|..+.+.+++++..|..++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 253
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.43 E-value=1.6e+02 Score=21.27 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 023459 42 LELENKEMKG 51 (282)
Q Consensus 42 LE~Ei~elke 51 (282)
|+.++..+..
T Consensus 52 L~~~~~~l~~ 61 (83)
T 1nkp_B 52 MRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 254
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.21 E-value=1.1e+02 Score=19.44 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhh
Q 023459 105 VAELKRVLGEKGVKLEELEREVDG 128 (282)
Q Consensus 105 m~~LkseIee~e~eIeelEkeIe~ 128 (282)
|.+|+...+.+-..-..++.++..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444443333333333333
Done!