BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023461
MATTLTWQPLQLQPKTTLHIGRRRAATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGF
EQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAISVRWRSFRMDFSRNWP
RYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLPIAAPLLIGTVANNFVI
KMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLLVPRARLFVVQAVETLCGNQKGTSFQ
EMVGARNLQSLMMTLLMLTLRRNEKILNIASDCQSDQTQRSK

High Scoring Gene Products

Symbol, full name Information P value
AT2G44870 protein from Arabidopsis thaliana 1.6e-54

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023461
        (282 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2054972 - symbol:AT2G44870 "AT2G44870" species...   563  1.6e-54   1


>TAIR|locus:2054972 [details] [associations]
            symbol:AT2G44870 "AT2G44870" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0009536 "plastid" evidence=IDA] GO:GO:0009507
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002388 EMBL:AF370532
            EMBL:AY072511 IPI:IPI00521690 PIR:T00406 RefSeq:NP_566028.1
            UniGene:At.24495 STRING:O22164 PaxDb:O22164 PRIDE:O22164
            EnsemblPlants:AT2G44870.1 GeneID:819096 KEGG:ath:AT2G44870
            TAIR:At2g44870 eggNOG:NOG297581 HOGENOM:HOG000243594
            InParanoid:O22164 OMA:RNWPRYR PhylomeDB:O22164
            ProtClustDB:CLSN2688932 ArrayExpress:O22164 Genevestigator:O22164
            Uniprot:O22164
        Length = 248

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/137 (77%), Positives = 122/137 (89%)

Query:    45 SGEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREFAI 104
             SG+AWRDAWR+AN+GFEQ VF+AKKTAERIDRQY+VSRR +SAA +AA RARE+DREF I
Sbjct:    44 SGKAWRDAWRSANDGFEQFVFEAKKTAERIDRQYAVSRRFSSAASSAADRAREIDREFGI 103

Query:   105 SVRWRSFRMDFSRNWPRYRKQLNDFLNTPLGRSFATIFFLWFALSGWLFRILILATWVLP 164
             + R R+   DFSRN+P+YRKQ + FLNTPLG SFATIFFLWFALSGWLFR++I+ATWVLP
Sbjct:   104 TPRVRTVSADFSRNFPKYRKQFSAFLNTPLGGSFATIFFLWFALSGWLFRVIIIATWVLP 163

Query:   165 IAAPLLIGTVANNFVIK 181
             IA PLLIG VANNFVIK
Sbjct:   164 IAGPLLIGAVANNFVIK 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.134   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       237   0.00090  113 3  11 22  0.47    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  193 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.02u 0.09s 17.11t   Elapsed:  00:00:01
  Total cpu time:  17.02u 0.09s 17.11t   Elapsed:  00:00:01
  Start:  Fri May 10 03:40:35 2013   End:  Fri May 10 03:40:36 2013

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