BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023461
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FJD6|RBOHH_ARATH Putative respiratory burst oxidase homolog protein H OS=Arabidopsis
           thaliana GN=RBOHH PE=3 SV=1
          Length = 886

 Score = 32.3 bits (72), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 9   PLQLQPKTTLHIGRRRA--ATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFD 66
           P    PK T   G +R    T  A R     RF  R  +G   RDAWR+  N F Q   D
Sbjct: 84  PTNAVPKKT---GPQRVERTTSSAARGLQSLRFLDRTVTGRE-RDAWRSIENRFNQFSVD 139

Query: 67  AKKTAERIDRQYSVSRRLNSAART--AAVRARELDREFAI 104
            K   E+      +   +  AA    A  R R+++ E  I
Sbjct: 140 GKLPKEKFGVCIGMGDTMEFAAEVYEALGRRRQIETENGI 179


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,656,662
Number of Sequences: 539616
Number of extensions: 3205115
Number of successful extensions: 10059
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10059
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)