Query 023461
Match_columns 282
No_of_seqs 16 out of 18
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 07:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 39.7 3.4 0.00012 30.6 -1.4 37 178-220 25-62 (70)
2 2l6l_A DNAJ homolog subfamily 36.8 7.5 0.00026 30.6 0.1 30 182-215 113-144 (155)
3 4bbr_M Transcription initiatio 33.2 13 0.00044 33.5 1.0 40 171-216 11-53 (345)
4 1pft_A TFIIB, PFTFIIBN; N-term 31.2 22 0.00076 23.4 1.7 27 182-213 6-33 (50)
5 4ioe_A Secreted protein ESXB; 31.2 83 0.0028 21.7 4.8 22 81-102 72-93 (93)
6 2js4_A UPF0434 protein BB2007; 28.1 25 0.00085 25.8 1.6 25 182-211 9-33 (70)
7 2hf1_A Tetraacyldisaccharide-1 27.9 24 0.00083 25.7 1.5 25 182-211 9-33 (68)
8 1kdx_B CREB; complex (transcri 27.8 19 0.00066 23.2 0.9 13 119-131 13-25 (28)
9 2pk7_A Uncharacterized protein 25.8 26 0.0009 25.6 1.4 27 180-211 7-33 (69)
10 2e72_A POGO transposable eleme 23.6 21 0.00072 25.6 0.5 9 183-191 14-22 (49)
11 2jny_A Uncharacterized BCR; st 23.2 33 0.0011 25.0 1.5 27 180-211 9-35 (67)
12 1bzk_A Protein (BAND 3 anion t 23.2 52 0.0018 22.4 2.4 28 117-147 1-28 (43)
13 3fnb_A Acylaminoacyl peptidase 23.0 51 0.0018 28.0 2.9 35 34-68 44-80 (405)
14 3mhs_C SAGA-associated factor 22.8 24 0.00083 28.2 0.8 16 180-198 69-84 (99)
15 1l8d_A DNA double-strand break 22.0 37 0.0013 25.1 1.6 11 181-191 47-57 (112)
16 2jr6_A UPF0434 protein NMA0874 20.6 41 0.0014 24.5 1.6 25 182-211 9-33 (68)
17 3oao_A Uncharacterized protein 20.6 20 0.00068 29.5 -0.1 20 124-143 86-105 (147)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.65 E-value=3.4 Score=30.61 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHhhcccccccceeeeecceeccceEEEEeeecc-ccccccch
Q 023461 178 FVIKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVRG-SLLVPRAR 220 (282)
Q Consensus 178 ~viEgaCP~ck~~~~~~ig~~~~~~q~v~~r~~rg-~v~~pr~~ 220 (282)
.-++-.|+.|+..|-.. -++.|-|+.|-. +++.+|-+
T Consensus 25 ~~v~Y~C~~CG~~~e~~------~~d~irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS------RTDAVRCKDCGHRILLKARTK 62 (70)
T ss_dssp CCCCEECSSSCCEECCC------TTSTTCCSSSCCCCCBCCCCS
T ss_pred ceEEEECCCCCCcceeC------CCCCccCCCCCceEeEecCCC
Confidence 45677899999998322 367789999999 88888765
No 2
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=36.77 E-value=7.5 Score=30.64 Aligned_cols=30 Identities=3% Similarity=-0.114 Sum_probs=20.3
Q ss_pred hcccccccceeeeecceeccc--eEEEEeeeccccc
Q 023461 182 MAFSVLTVGIYCLIGMDVLLN--EWVLVRLVRGSLL 215 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~--q~v~~r~~rg~v~ 215 (282)
-.|| |+..|. |-.+ .++ .+|.|+.|.-++.
T Consensus 113 ~~Cr-CG~~f~--i~~~-~l~~~~~v~C~sCSl~~~ 144 (155)
T 2l6l_A 113 LSCR-CGGKYS--VSKD-EAEEVSLISCDTCSLIIE 144 (155)
T ss_dssp EECS-SSCEEE--EETT-HHHHCCEEECSSSSCEEE
T ss_pred EcCC-CCCeEE--ecHH-HhCCCCEEECCCCceEEE
Confidence 5799 998872 2222 233 7899999987654
No 3
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=33.21 E-value=13 Score=33.54 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHhHHHHhhccccccc---ceeeeecceeccceEEEEeeecccccc
Q 023461 171 IGTVANNFVIKMAFSVLTV---GIYCLIGMDVLLNEWVLVRLVRGSLLV 216 (282)
Q Consensus 171 IGtian~~viEgaCP~ck~---~~~~~ig~~~~~~q~v~~r~~rg~v~~ 216 (282)
=+....++.++..||.||. .+ |= |---|+ ++|..| |.|..
T Consensus 11 ~~~~~~~l~~~~~Cp~C~~~~~~l---v~-D~~~G~-~vC~~C-GlVl~ 53 (345)
T 4bbr_M 11 AGRRGPNLNIVLTCPECKVYPPKI---VE-RFSEGD-VVCALC-GLVLS 53 (345)
T ss_dssp -----------CCCSSCCCSSCCE---EE-EGGGTE-EEETTT-CBEEE
T ss_pred ccccCcccccCCcCCCCCCCCCce---eE-ECCCCc-EEeCCC-CCCcc
Confidence 3344566777889999995 33 11 111133 679999 76654
No 4
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.22 E-value=22 Score=23.41 Aligned_cols=27 Identities=0% Similarity=-0.143 Sum_probs=16.6
Q ss_pred hccccccc-ceeeeecceeccceEEEEeeeccc
Q 023461 182 MAFSVLTV-GIYCLIGMDVLLNEWVLVRLVRGS 213 (282)
Q Consensus 182 gaCP~ck~-~~~~~ig~~~~~~q~v~~r~~rg~ 213 (282)
..||.||. .+. .... .+-++|..|.-+
T Consensus 6 ~~CP~C~~~~l~--~d~~---~gelvC~~CG~v 33 (50)
T 1pft_A 6 KVCPACESAELI--YDPE---RGEIVCAKCGYV 33 (50)
T ss_dssp CSCTTTSCCCEE--EETT---TTEEEESSSCCB
T ss_pred EeCcCCCCcceE--EcCC---CCeEECcccCCc
Confidence 47999987 441 1111 345889999543
No 5
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=31.20 E-value=83 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 023461 81 SRRLNSAARTAAVRARELDREF 102 (282)
Q Consensus 81 SrR~A~Aar~A~erArEIDref 102 (282)
....++.-+.+.+.-++.|++|
T Consensus 72 L~~i~~~L~~~A~~~~~~D~~y 93 (93)
T 4ioe_A 72 LEGISTDLKRIADKFRNTDNAY 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3444555555666666677655
No 6
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.13 E-value=25 Score=25.81 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=16.2
Q ss_pred hcccccccceeeeecceeccceEEEEeeec
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
-+||.||....--.+ .+..+|..|+
T Consensus 9 L~CP~ck~~L~~~~~-----~~~LiC~~cg 33 (70)
T 2js4_A 9 LVCPVCKGRLEFQRA-----QAELVCNADR 33 (70)
T ss_dssp CBCTTTCCBEEEETT-----TTEEEETTTT
T ss_pred eECCCCCCcCEEeCC-----CCEEEcCCCC
Confidence 479999987632221 3567788774
No 7
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.89 E-value=24 Score=25.73 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=16.0
Q ss_pred hcccccccceeeeecceeccceEEEEeeec
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
-+||.||....-..+ .+..+|..|+
T Consensus 9 L~CP~ck~~L~~~~~-----~~~LiC~~cg 33 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS-----KDELICKGDR 33 (68)
T ss_dssp CBCTTTCCBCEEETT-----TTEEEETTTT
T ss_pred eECCCCCCcCeEeCC-----CCEEEcCCCC
Confidence 479999987632222 3566787774
No 8
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=27.80 E-value=19 Score=23.24 Aligned_cols=13 Identities=54% Similarity=0.843 Sum_probs=11.4
Q ss_pred chhhHHhhhHhhC
Q 023461 119 WPRYRKQLNDFLN 131 (282)
Q Consensus 119 WP~YRRQL~dFl~ 131 (282)
=|.|++-||||++
T Consensus 13 rpSYrkIlndls~ 25 (28)
T 1kdx_B 13 RPSYRKILNDLSS 25 (28)
T ss_dssp STHHHHHHHHHHH
T ss_pred CchHHHHHHhhcc
Confidence 4899999999975
No 9
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.76 E-value=26 Score=25.62 Aligned_cols=27 Identities=4% Similarity=-0.127 Sum_probs=17.1
Q ss_pred HhhcccccccceeeeecceeccceEEEEeeec
Q 023461 180 IKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 180 iEgaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
.--+||.||....--.+ .+..+|..|+
T Consensus 7 eiL~CP~ck~~L~~~~~-----~~~LiC~~cg 33 (69)
T 2pk7_A 7 DILACPICKGPLKLSAD-----KTELISKGAG 33 (69)
T ss_dssp GTCCCTTTCCCCEECTT-----SSEEEETTTT
T ss_pred hheeCCCCCCcCeEeCC-----CCEEEcCCCC
Confidence 34589999987632211 4567788774
No 10
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.57 E-value=21 Score=25.60 Aligned_cols=9 Identities=0% Similarity=-0.149 Sum_probs=8.5
Q ss_pred cccccccce
Q 023461 183 AFSVLTVGI 191 (282)
Q Consensus 183 aCP~ck~~~ 191 (282)
+||.|.++|
T Consensus 14 ~CPrCn~~f 22 (49)
T 2e72_A 14 ICPRCNAQF 22 (49)
T ss_dssp CCTTTCCCC
T ss_pred eCCcccccc
Confidence 799999999
No 11
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.24 E-value=33 Score=25.03 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=17.0
Q ss_pred HhhcccccccceeeeecceeccceEEEEeeec
Q 023461 180 IKMAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 180 iEgaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
.--+||.||....-.. .++..+|..|+
T Consensus 9 eiL~CP~ck~~L~~~~-----~~g~LvC~~c~ 35 (67)
T 2jny_A 9 EVLACPKDKGPLRYLE-----SEQLLVNERLN 35 (67)
T ss_dssp CCCBCTTTCCBCEEET-----TTTEEEETTTT
T ss_pred HHhCCCCCCCcCeEeC-----CCCEEEcCCCC
Confidence 3358999998763221 14567788774
No 12
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.21 E-value=52 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=19.5
Q ss_pred hcchhhHHhhhHhhCCCCchHHHHHHHHHHH
Q 023461 117 RNWPRYRKQLNDFLNTPLGRSFATIFFLWFA 147 (282)
Q Consensus 117 RnWP~YRRQL~dFl~TPlGks~~TiFF~Wfa 147 (282)
|..|-|.- ||.|--.-|.+++..|++|+
T Consensus 1 rR~p~Y~S---D~~dg~~~~~laa~~fiyFa 28 (43)
T 1bzk_A 1 XRYPYYLS---DITDAFSPQVLAAVIFIYFA 28 (43)
T ss_dssp -CCSTTHH---HHTTSSCSHHHHHHHHHHHH
T ss_pred CCCcccHH---HHHHHhhhhHHHHHHHHHHH
Confidence 45788864 55554447999999888885
No 13
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=23.00 E-value=51 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=28.1
Q ss_pred cchhHHHHhhhcc--hHHHHHHHHHhHHHHHhHHHHH
Q 023461 34 SDFDRFARRMTSG--EAWRDAWRTANNGFEQLVFDAK 68 (282)
Q Consensus 34 ~d~D~~a~r~~sg--~awR~AwRsAN~gfEq~~fEAR 68 (282)
++....+.+|++| +.|.++|....+..|+.+.++.
T Consensus 44 ~e~~~~~~~i~~~~~~~w~~~w~~~a~~~~~~a~~~~ 80 (405)
T 3fnb_A 44 GELFYIASGIRDGNPTDWCKRFNEHADYLEDEVERVK 80 (405)
T ss_dssp HHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888886 9999999999888888776653
No 14
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=22.81 E-value=24 Score=28.17 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=10.6
Q ss_pred Hhhcccccccceeeeecce
Q 023461 180 IKMAFSVLTVGIYCLIGMD 198 (282)
Q Consensus 180 iEgaCP~ck~~~~~~ig~~ 198 (282)
..-.||+|++.+ .++|
T Consensus 69 ~~~~C~nC~R~v---aa~R 84 (99)
T 3mhs_C 69 QYIHCENCGRDV---SANR 84 (99)
T ss_dssp CEEECTTTCCEE---EGGG
T ss_pred CeEECCCCCCCc---hhhh
Confidence 344688888877 5554
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.97 E-value=37 Score=25.13 Aligned_cols=11 Identities=18% Similarity=-0.007 Sum_probs=9.1
Q ss_pred hhcccccccce
Q 023461 181 KMAFSVLTVGI 191 (282)
Q Consensus 181 EgaCP~ck~~~ 191 (282)
.+.||.|+...
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 66899998776
No 16
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.61 E-value=41 Score=24.49 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=15.9
Q ss_pred hcccccccceeeeecceeccceEEEEeeec
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
-+||.||....-..+ .+..+|..|+
T Consensus 9 L~CP~ck~~L~~~~~-----~~~LiC~~cg 33 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQD-----KQELWSRQAK 33 (68)
T ss_dssp CBCSSSCCBCEEETT-----TTEEEETTTT
T ss_pred eECCCCCCcCeEeCC-----CCEEEcCCCC
Confidence 479999987632221 3556787774
No 17
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=20.58 E-value=20 Score=29.50 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=15.7
Q ss_pred HhhhHhhCCCCchHHHHHHH
Q 023461 124 KQLNDFLNTPLGRSFATIFF 143 (282)
Q Consensus 124 RQL~dFl~TPlGks~~TiFF 143 (282)
+.+.+|.+||.||.+..-.=
T Consensus 86 ~~l~~FY~sp~Gkk~~~~~p 105 (147)
T 3oao_A 86 KDLNAFYQSPLGKKVLEKMP 105 (147)
T ss_dssp HHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHhH
Confidence 46778999999998875443
Done!