Query 023461
Match_columns 282
No_of_seqs 16 out of 18
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 07:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023461.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023461hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pfva3 g.41.1.1 (A:141-175) M 61.2 0.63 4.6E-05 29.7 -0.5 10 180-189 1-10 (35)
2 d1rqga3 g.41.1.1 (A:139-173) M 60.3 0.79 5.7E-05 29.1 -0.2 10 180-189 1-10 (35)
3 d1nera_ a.35.1.2 (A:) Ner {Bac 37.8 10 0.00073 27.1 2.7 40 94-135 24-63 (74)
4 d2p02a3 d.130.1.1 (A:274-417) 32.3 9.3 0.00068 29.9 1.9 33 170-202 46-78 (144)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 29.3 47 0.0034 24.0 5.4 57 45-101 1-60 (144)
6 d2hf1a1 b.171.1.1 (A:2-60) Hyp 28.7 9.4 0.00068 25.8 1.2 25 182-211 8-32 (59)
7 d2pk7a1 b.171.1.1 (A:3-61) Unc 26.8 12 0.00085 25.4 1.4 25 182-211 7-31 (59)
8 d1cl4a_ g.40.1.1 (A:) Nucleoca 26.8 5.7 0.00042 24.9 -0.2 11 181-191 2-12 (32)
9 d1rutx3 g.39.1.3 (X:83-113) LI 24.0 17 0.0012 22.4 1.6 24 182-215 3-26 (31)
10 d1dsva_ g.40.1.1 (A:) Nucleic 24.0 9.9 0.00072 23.6 0.5 10 182-191 3-12 (31)
11 d1vd4a_ g.41.3.1 (A:) Transcri 22.2 11 0.00081 25.9 0.6 35 181-215 14-50 (62)
No 1
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=61.19 E-value=0.63 Score=29.65 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=8.7
Q ss_pred Hhhccccccc
Q 023461 180 IKMAFSVLTV 189 (282)
Q Consensus 180 iEgaCP~ck~ 189 (282)
|+|+||.|+.
T Consensus 1 V~G~CP~C~~ 10 (35)
T d1pfva3 1 VKGTCPKCKS 10 (35)
T ss_dssp EEEECTTTCC
T ss_pred CeeECCCCCC
Confidence 6899999976
No 2
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=60.26 E-value=0.79 Score=29.14 Aligned_cols=10 Identities=0% Similarity=-0.194 Sum_probs=8.7
Q ss_pred Hhhccccccc
Q 023461 180 IKMAFSVLTV 189 (282)
Q Consensus 180 iEgaCP~ck~ 189 (282)
|||+||.|+.
T Consensus 1 V~G~CP~C~~ 10 (35)
T d1rqga3 1 VIGTCPYCGA 10 (35)
T ss_dssp CCSBCSSSCC
T ss_pred CeEECCCCCC
Confidence 6899999984
No 3
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=37.78 E-value=10 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=33.8
Q ss_pred HHHHhhhhhhhhHhHHhhhhhhhhcchhhHHhhhHhhCCCCc
Q 023461 94 RARELDREFAISVRWRSFRMDFSRNWPRYRKQLNDFLNTPLG 135 (282)
Q Consensus 94 rArEIDrefgIrrR~R~fs~Df~RnWP~YRRQL~dFl~TPlG 135 (282)
...+|.+++|+.. .++..=+.|.||+.-|-+.+|++++.-
T Consensus 24 sLa~lsr~~gls~--stl~naL~rp~pKgEriIA~aLg~~P~ 63 (74)
T d1nera_ 24 SLSALSRQFGYAP--TTLANALERHWPKGEQIIANALETKPE 63 (74)
T ss_dssp CHHHHHHHHSCCH--HHHHHTTTSSCHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHhCCCH--HHHHHHHcCCChHHHHHHHHHHCcCHH
Confidence 3567888999976 578888899999999999999999753
No 4
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=32.28 E-value=9.3 Score=29.95 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=28.0
Q ss_pred HHHHHHhHHHHhhcccccccceeeeecceeccc
Q 023461 170 LIGTVANNFVIKMAFSVLTVGIYCLIGMDVLLN 202 (282)
Q Consensus 170 LIGtian~~viEgaCP~ck~~~~~~ig~~~~~~ 202 (282)
+-=+||+|+|..|.|..|..|.-..||..--++
T Consensus 46 ~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvs 78 (144)
T d2p02a3 46 AARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLS 78 (144)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSE
T ss_pred HHHHHHHHHHHhCCCCeeEEEEEeecCccccce
Confidence 335799999999999999999999999874443
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=29.30 E-value=47 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHhHHHHHhHHHHHHHHHhhh-hhhh--hhhhHHHHHHHHHHHHHHhhhh
Q 023461 45 SGEAWRDAWRTANNGFEQLVFDAKKTAERID-RQYS--VSRRLNSAARTAAVRARELDRE 101 (282)
Q Consensus 45 sg~awR~AwRsAN~gfEq~~fEARktA~rlD-r~Ys--VSrR~A~Aar~A~erArEIDre 101 (282)
||..|-....+..+-+.++.-.|+.+.+.++ ++|+ ++..+++........+.++-.+
T Consensus 1 ~~~~~e~~~d~f~~y~~~l~~~a~~~~~~l~~sel~~el~~~l~e~~~~l~~~~~~l~~~ 60 (144)
T d1gs9a_ 1 SGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQ 60 (144)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666677777777777777765 5663 6666666666666655555444
No 6
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}
Probab=28.75 E-value=9.4 Score=25.76 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=16.8
Q ss_pred hcccccccceeeeecceeccceEEEEeeec
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
-+||.||....-. .. ++..+|..|+
T Consensus 8 L~CP~ck~~L~~~--~~---~~~Lvc~~~~ 32 (59)
T d2hf1a1 8 LVCPLCKGPLVFD--KS---KDELICKGDR 32 (59)
T ss_dssp CBCTTTCCBCEEE--TT---TTEEEETTTT
T ss_pred hcCCCCCCeeeEe--CC---CCEEecCCcC
Confidence 3799999887321 12 5667888776
No 7
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}
Probab=26.77 E-value=12 Score=25.36 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=16.9
Q ss_pred hcccccccceeeeecceeccceEEEEeeec
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVR 211 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~r 211 (282)
-+||.||....- -.+ ++..+|..|+
T Consensus 7 L~CP~ck~~L~~--~~~---~~~Lvc~~~~ 31 (59)
T d2pk7a1 7 LACPICKGPLKL--SAD---KTELISKGAG 31 (59)
T ss_dssp CCCTTTCCCCEE--CTT---SSEEEETTTT
T ss_pred eECCCCCCcceE--eCC---CCEEecCCcC
Confidence 479999987721 122 5678888775
No 8
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=26.77 E-value=5.7 Score=24.86 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=9.4
Q ss_pred hhcccccccce
Q 023461 181 KMAFSVLTVGI 191 (282)
Q Consensus 181 EgaCP~ck~~~ 191 (282)
-|-||.|++++
T Consensus 2 P~lCPrC~kG~ 12 (32)
T d1cl4a_ 2 PGLCPRCKRGK 12 (32)
T ss_dssp CCSCSSCSSCS
T ss_pred CccCccccCcc
Confidence 46799999987
No 9
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.97 E-value=17 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=16.6
Q ss_pred hcccccccceeeeecceeccceEEEEeeeccccc
Q 023461 182 MAFSVLTVGIYCLIGMDVLLNEWVLVRLVRGSLL 215 (282)
Q Consensus 182 gaCP~ck~~~~~~ig~~~~~~q~v~~r~~rg~v~ 215 (282)
|+|..|...| -- +||| ++.|+.|.
T Consensus 3 g~Ca~C~~~I---~~-----~e~V--mRA~~~Vy 26 (31)
T d1rutx3 3 GACSACGQSI---PA-----SELV--MRAQGNVY 26 (31)
T ss_dssp EECTTTCCEE---CT-----TSEE--EEETTEEE
T ss_pred cccccccCcC---Ch-----hHhh--eeccccee
Confidence 8999999998 22 4554 56666554
No 10
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=23.95 E-value=9.9 Score=23.57 Aligned_cols=10 Identities=10% Similarity=-0.140 Sum_probs=8.8
Q ss_pred hcccccccce
Q 023461 182 MAFSVLTVGI 191 (282)
Q Consensus 182 gaCP~ck~~~ 191 (282)
+-||.|++++
T Consensus 3 ~lCPrC~kG~ 12 (31)
T d1dsva_ 3 GLCPRCKKGY 12 (31)
T ss_dssp CBCTTTCSSB
T ss_pred ccCccccCcc
Confidence 5799999988
No 11
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.24 E-value=11 Score=25.85 Aligned_cols=35 Identities=6% Similarity=-0.040 Sum_probs=21.5
Q ss_pred hhcccccccceeeeeccee--ccceEEEEeeeccccc
Q 023461 181 KMAFSVLTVGIYCLIGMDV--LLNEWVLVRLVRGSLL 215 (282)
Q Consensus 181 EgaCP~ck~~~~~~ig~~~--~~~q~v~~r~~rg~v~ 215 (282)
+-.||.|+++|.-|=-... .......|..|.|.|-
T Consensus 14 ~y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~el~ 50 (62)
T d1vd4a_ 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ceECCCCCCCcchhhHHHhcCcCCCeEEecCCCCEEe
Confidence 3469999999943311110 0145678888888763
Done!