BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023462
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
 pdb|1WWL|B Chain B, Crystal Structure Of Cd14
          Length = 312

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 55  VLKKICRDNGLDRWPYRKFLSGKSIEDIKKYAAREKSKELAELSKIARKSGFQPLSNETS 114
           +LK++  D   D   +   +   S++ +   AAR  S+ L    ++   SG Q L+ E  
Sbjct: 48  LLKRV--DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 115 KLHGVTSPPNLQQQG 129
           ++ G   PP L+  G
Sbjct: 106 EVTGTAPPPLLEATG 120


>pdb|1TWJ|A Chain A, Crystal Structure Of B. Subtilis Purs P21 Crystal Form
 pdb|1TWJ|B Chain B, Crystal Structure Of B. Subtilis Purs P21 Crystal Form
 pdb|1TWJ|C Chain C, Crystal Structure Of B. Subtilis Purs P21 Crystal Form
 pdb|1TWJ|D Chain D, Crystal Structure Of B. Subtilis Purs P21 Crystal Form
          Length = 84

 Score = 28.1 bits (61), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 222 ESNVDPQGSGLLTAARKRTVEEGREALKLGVYKKYCVKQLDRKERVLLHRI 272
           ES +DPQGS +  A    T  E ++ +++G Y +  +++ DR   VL+  +
Sbjct: 12  ESVLDPQGSAVQHALHSMTYNEVQD-VRIGKYMELTIEKSDRDLDVLVKEM 61


>pdb|1T4A|A Chain A, Structure Of B. Subtilis Purs C2 Crystal Form
 pdb|1T4A|B Chain B, Structure Of B. Subtilis Purs C2 Crystal Form
          Length = 84

 Score = 27.7 bits (60), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 222 ESNVDPQGSGLLTAARKRTVEEGREALKLGVYKKYCVKQLDRKERVLL 269
           ES +DPQGS +  A    T  E ++ +++G Y +  +++ DR   VL+
Sbjct: 12  ESVLDPQGSAVQHALHSXTYNEVQD-VRIGKYXELTIEKSDRDLDVLV 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,756,906
Number of Sequences: 62578
Number of extensions: 332414
Number of successful extensions: 691
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 21
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)