Query 023462
Match_columns 282
No_of_seqs 124 out of 222
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o3f_A Putative HTH-type trans 96.1 0.0035 1.2E-07 49.2 3.1 35 36-70 36-70 (111)
2 3e7l_A Transcriptional regulat 96.0 0.01 3.5E-07 41.9 4.9 31 36-66 29-59 (63)
3 1g2h_A Transcriptional regulat 95.4 0.018 6.2E-07 40.7 4.3 27 40-66 34-60 (61)
4 3iwf_A Transcription regulator 95.3 0.0071 2.4E-07 47.6 2.1 34 36-69 32-65 (107)
5 2k9s_A Arabinose operon regula 95.3 0.14 4.7E-06 38.3 9.1 66 32-109 10-84 (107)
6 1umq_A Photosynthetic apparatu 95.1 0.026 8.8E-07 43.0 4.7 30 37-66 52-81 (81)
7 1bl0_A Protein (multiple antib 95.0 0.052 1.8E-06 42.1 6.2 83 34-128 20-113 (129)
8 1tc3_C Protein (TC3 transposas 94.7 0.026 8.9E-07 35.1 3.2 25 39-63 21-45 (51)
9 3mn2_A Probable ARAC family tr 94.5 0.28 9.6E-06 36.5 9.1 64 34-109 11-84 (108)
10 1ntc_A Protein (nitrogen regul 94.4 0.019 6.4E-07 43.3 2.3 28 38-65 63-90 (91)
11 1eto_A FIS, factor for inversi 94.4 0.053 1.8E-06 42.3 4.9 31 36-66 68-98 (98)
12 3mkl_A HTH-type transcriptiona 94.2 0.22 7.5E-06 38.0 8.0 75 39-125 23-105 (120)
13 1jko_C HIN recombinase, DNA-in 94.2 0.04 1.4E-06 35.0 3.2 27 39-65 21-47 (52)
14 3oou_A LIN2118 protein; protei 94.0 0.4 1.4E-05 35.7 9.0 63 34-108 14-84 (108)
15 3lsg_A Two-component response 93.8 0.49 1.7E-05 34.8 9.1 28 39-66 19-47 (103)
16 3oio_A Transcriptional regulat 93.8 0.44 1.5E-05 35.8 8.9 80 32-123 14-104 (113)
17 1j9i_A GPNU1 DBD;, terminase s 92.5 0.054 1.9E-06 38.4 2.0 42 40-85 3-49 (68)
18 2elh_A CG11849-PA, LD40883P; s 91.9 0.2 7E-06 36.9 4.6 26 39-64 38-63 (87)
19 2jn6_A Protein CGL2762, transp 91.1 0.16 5.6E-06 37.4 3.4 37 29-65 10-49 (97)
20 2jml_A DNA binding domain/tran 90.8 0.18 6.3E-06 36.8 3.3 33 39-72 5-37 (81)
21 2x48_A CAG38821; archeal virus 90.8 0.14 4.9E-06 34.0 2.5 24 39-62 31-54 (55)
22 2xi8_A Putative transcription 90.5 0.28 9.4E-06 32.4 3.7 32 30-61 5-36 (66)
23 2p7v_B Sigma-70, RNA polymeras 89.4 0.45 1.5E-05 33.0 4.3 24 39-62 25-48 (68)
24 2r1j_L Repressor protein C2; p 89.4 0.36 1.2E-05 32.0 3.6 32 30-61 9-40 (68)
25 1zug_A Phage 434 CRO protein; 89.3 0.39 1.3E-05 32.2 3.7 32 30-61 7-38 (71)
26 1r69_A Repressor protein CI; g 88.8 0.44 1.5E-05 31.8 3.7 32 31-62 6-37 (69)
27 3gbg_A TCP pilus virulence reg 88.7 1 3.6E-05 37.9 6.8 58 39-108 185-247 (276)
28 3omt_A Uncharacterized protein 88.7 0.43 1.5E-05 32.8 3.7 33 30-62 12-44 (73)
29 2wiu_B HTH-type transcriptiona 88.5 0.57 1.9E-05 32.9 4.3 32 30-61 16-47 (88)
30 2b5a_A C.BCLI; helix-turn-heli 88.4 0.48 1.6E-05 32.3 3.8 32 30-61 14-45 (77)
31 3b7h_A Prophage LP1 protein 11 88.4 0.43 1.5E-05 32.7 3.5 32 30-61 11-42 (78)
32 1d5y_A ROB transcription facto 88.1 1.8 6.1E-05 36.6 7.9 64 33-108 11-82 (292)
33 2k9q_A Uncharacterized protein 88.0 0.47 1.6E-05 33.0 3.6 32 30-61 6-37 (77)
34 1adr_A P22 C2 repressor; trans 88.0 0.49 1.7E-05 32.1 3.6 32 30-61 9-40 (76)
35 2o8x_A Probable RNA polymerase 87.9 0.62 2.1E-05 31.5 4.1 26 37-62 29-54 (70)
36 3fmy_A HTH-type transcriptiona 87.9 0.44 1.5E-05 33.6 3.4 39 31-72 16-54 (73)
37 1y7y_A C.AHDI; helix-turn-heli 87.8 0.55 1.9E-05 31.7 3.8 32 30-61 17-48 (74)
38 3bs3_A Putative DNA-binding pr 87.8 0.55 1.9E-05 32.0 3.8 34 28-61 12-45 (76)
39 2ef8_A C.ECOT38IS, putative tr 87.7 0.55 1.9E-05 32.6 3.8 32 30-61 14-45 (84)
40 3hug_A RNA polymerase sigma fa 87.5 0.6 2.1E-05 34.2 4.1 27 36-62 50-76 (92)
41 3bd1_A CRO protein; transcript 87.3 0.88 3E-05 32.0 4.7 34 31-65 4-37 (79)
42 2cw1_A SN4M; lambda CRO fold, 87.1 0.83 2.8E-05 33.3 4.5 33 29-63 5-37 (65)
43 2a6c_A Helix-turn-helix motif; 86.4 0.69 2.4E-05 33.0 3.8 32 30-61 22-53 (83)
44 2kpj_A SOS-response transcript 85.9 0.76 2.6E-05 33.4 3.8 33 30-62 13-45 (94)
45 3qq6_A HTH-type transcriptiona 85.9 0.76 2.6E-05 32.6 3.8 33 30-62 14-46 (78)
46 2ewt_A BLDD, putative DNA-bind 85.9 1 3.5E-05 30.3 4.3 33 30-62 12-46 (71)
47 1x57_A Endothelial differentia 85.4 1 3.5E-05 32.3 4.3 33 30-62 17-49 (91)
48 3op9_A PLI0006 protein; struct 85.3 0.91 3.1E-05 33.9 4.1 33 30-62 13-45 (114)
49 1ku3_A Sigma factor SIGA; heli 85.2 0.79 2.7E-05 32.2 3.5 24 39-62 30-53 (73)
50 2ict_A Antitoxin HIGA; helix-t 85.2 0.99 3.4E-05 32.5 4.2 33 30-62 12-44 (94)
51 3s8q_A R-M controller protein; 85.1 0.9 3.1E-05 31.8 3.8 32 30-61 15-46 (82)
52 3f6w_A XRE-family like protein 85.1 0.82 2.8E-05 31.9 3.6 32 30-61 18-49 (83)
53 2hin_A GP39, repressor protein 85.0 1.4 4.6E-05 32.7 4.9 37 29-66 1-37 (71)
54 3kz3_A Repressor protein CI; f 84.9 0.87 3E-05 32.0 3.6 31 31-61 17-47 (80)
55 3t76_A VANU, transcriptional r 84.7 0.87 3E-05 34.2 3.8 33 30-62 28-60 (88)
56 4fe7_A Xylose operon regulator 84.5 3.7 0.00013 36.6 8.4 59 39-109 321-385 (412)
57 2ppx_A AGR_C_3184P, uncharacte 84.5 1 3.4E-05 33.2 4.0 32 30-61 34-65 (99)
58 3o9x_A Uncharacterized HTH-typ 84.4 0.7 2.4E-05 35.6 3.2 40 31-73 76-115 (133)
59 1y6u_A XIS, excisionase from t 84.3 0.8 2.7E-05 33.8 3.3 28 38-65 15-43 (70)
60 1uxc_A FRUR (1-57), fructose r 84.2 0.78 2.7E-05 33.0 3.2 24 40-63 1-24 (65)
61 2jpc_A SSRB; DNA binding prote 84.0 0.83 2.8E-05 30.5 3.1 25 37-61 11-35 (61)
62 1b0n_A Protein (SINR protein); 83.8 1 3.6E-05 32.9 3.8 31 31-61 6-36 (111)
63 2glo_A Brinker CG9653-PA; prot 83.3 0.7 2.4E-05 31.6 2.5 25 39-63 21-49 (59)
64 3mzy_A RNA polymerase sigma-H 83.1 1 3.5E-05 34.1 3.6 26 37-62 122-147 (164)
65 1lmb_3 Protein (lambda repress 83.1 1.1 3.8E-05 31.8 3.6 29 33-61 24-52 (92)
66 3eus_A DNA-binding protein; st 83.1 1.2 4.1E-05 32.0 3.8 32 30-61 18-49 (86)
67 2pij_A Prophage PFL 6 CRO; tra 83.0 1.5 5.3E-05 29.6 4.1 32 30-62 5-36 (67)
68 2vz4_A Tipal, HTH-type transcr 82.9 1.3 4.3E-05 34.0 4.1 28 39-67 1-28 (108)
69 3i4p_A Transcriptional regulat 82.8 1.1 3.7E-05 36.1 3.9 36 31-66 9-47 (162)
70 2l49_A C protein; P2 bacteriop 82.5 1.4 4.8E-05 31.7 4.0 32 30-61 8-39 (99)
71 1x3u_A Transcriptional regulat 82.2 1.3 4.4E-05 30.8 3.6 25 37-61 29-53 (79)
72 1rzs_A Antirepressor, regulato 82.2 1.4 4.7E-05 30.6 3.7 31 29-60 1-31 (61)
73 1tty_A Sigma-A, RNA polymerase 81.9 1.2 4.2E-05 32.4 3.5 24 39-62 38-61 (87)
74 1z4h_A TORI, TOR inhibition pr 81.8 0.86 2.9E-05 32.1 2.6 45 39-86 10-57 (66)
75 1pdn_C Protein (PRD paired); p 81.8 1.1 3.8E-05 32.8 3.3 25 39-63 33-57 (128)
76 1u78_A TC3 transposase, transp 81.7 1 3.6E-05 33.9 3.2 25 39-63 22-46 (141)
77 3trb_A Virulence-associated pr 81.7 0.91 3.1E-05 34.8 2.9 32 30-61 17-49 (104)
78 3mlf_A Transcriptional regulat 81.4 1.7 5.7E-05 33.2 4.3 34 28-61 25-58 (111)
79 1qgp_A Protein (double strande 81.2 1.4 4.9E-05 32.3 3.7 30 34-63 23-55 (77)
80 1je8_A Nitrate/nitrite respons 80.9 1.4 4.8E-05 31.9 3.5 25 37-61 34-58 (82)
81 1fse_A GERE; helix-turn-helix 80.6 1.6 5.4E-05 29.8 3.5 26 37-62 24-49 (74)
82 1or7_A Sigma-24, RNA polymeras 80.6 1.7 5.7E-05 34.2 4.1 26 37-62 154-179 (194)
83 1r8d_A Transcription activator 80.2 1.7 5.9E-05 33.2 4.0 28 39-67 2-29 (109)
84 1jhg_A Trp operon repressor; c 80.2 1.2 4.2E-05 35.3 3.2 25 39-63 58-82 (101)
85 1qbj_A Protein (double-strande 80.0 2 6.8E-05 32.3 4.2 32 32-63 17-51 (81)
86 2p5v_A Transcriptional regulat 80.0 1.8 6.1E-05 34.5 4.1 33 31-63 16-48 (162)
87 3cec_A Putative antidote prote 79.3 1.7 5.9E-05 31.9 3.6 33 30-62 22-54 (104)
88 2e1c_A Putative HTH-type trans 79.3 1.9 6.4E-05 35.5 4.1 33 31-63 33-65 (171)
89 3g5g_A Regulatory protein; tra 79.1 1.9 6.4E-05 32.3 3.8 32 30-61 32-63 (99)
90 1xsv_A Hypothetical UPF0122 pr 78.7 2.2 7.5E-05 33.1 4.2 26 37-62 39-64 (113)
91 3c57_A Two component transcrip 78.6 2.2 7.6E-05 31.7 4.0 26 37-62 40-65 (95)
92 2cyy_A Putative HTH-type trans 78.5 2.2 7.4E-05 33.6 4.2 32 32-63 14-45 (151)
93 2rn7_A IS629 ORFA; helix, all 78.5 0.85 2.9E-05 34.0 1.7 25 40-64 31-55 (108)
94 1gdt_A GD resolvase, protein ( 78.4 4.2 0.00014 33.1 6.0 34 29-62 146-181 (183)
95 2ia0_A Putative HTH-type trans 78.2 2.1 7.2E-05 35.1 4.1 37 31-67 23-62 (171)
96 3vk0_A NHTF, transcriptional r 78.1 2.2 7.6E-05 32.1 4.0 32 30-61 25-56 (114)
97 3ivp_A Putative transposon-rel 77.7 2.6 9E-05 31.9 4.3 30 30-59 16-45 (126)
98 3hot_A Transposable element ma 77.7 3.9 0.00013 35.4 5.9 47 24-71 67-117 (345)
99 2pn6_A ST1022, 150AA long hypo 77.6 2.1 7.2E-05 33.4 3.8 32 32-63 10-41 (150)
100 3kxa_A NGO0477 protein, putati 77.6 2.5 8.6E-05 33.8 4.3 33 30-62 72-104 (141)
101 2eby_A Putative HTH-type trans 76.6 1.7 5.8E-05 32.3 2.9 28 34-61 19-46 (113)
102 1i1g_A Transcriptional regulat 76.6 2.7 9.3E-05 32.2 4.1 36 32-67 11-49 (141)
103 2o38_A Hypothetical protein; a 76.5 2.3 8E-05 33.3 3.8 32 30-61 44-75 (120)
104 2ovg_A Phage lambda CRO; trans 76.4 2.7 9.4E-05 30.4 3.9 32 29-62 5-36 (66)
105 3f52_A CLP gene regulator (CLG 76.4 2.3 8E-05 31.7 3.6 33 29-61 31-63 (117)
106 2jvl_A TRMBF1; coactivator, he 76.2 2.6 9E-05 31.8 3.9 32 30-61 38-71 (107)
107 2auw_A Hypothetical protein NE 76.1 2.3 7.8E-05 36.5 3.9 32 30-61 94-125 (170)
108 1s7o_A Hypothetical UPF0122 pr 76.0 2.6 8.9E-05 32.9 3.9 27 37-63 36-62 (113)
109 2dbb_A Putative HTH-type trans 75.9 2.9 9.9E-05 32.7 4.2 36 32-67 16-54 (151)
110 2lfw_A PHYR sigma-like domain; 75.7 1.6 5.3E-05 34.5 2.6 26 37-62 107-132 (157)
111 2p5k_A Arginine repressor; DNA 75.6 4.4 0.00015 27.1 4.5 33 34-66 14-51 (64)
112 1k78_A Paired box protein PAX5 75.2 2.2 7.4E-05 33.1 3.3 25 39-63 48-72 (149)
113 2bnm_A Epoxidase; oxidoreducta 75.1 2.6 8.8E-05 34.0 3.8 33 30-62 14-46 (198)
114 4ghj_A Probable transcriptiona 74.6 3 0.0001 32.1 3.9 32 31-64 41-72 (101)
115 2rnj_A Response regulator prot 74.5 1.9 6.6E-05 31.4 2.7 26 37-62 42-67 (91)
116 2cg4_A Regulatory protein ASNC 74.3 3.3 0.00011 32.5 4.2 32 32-63 15-46 (152)
117 2zhg_A Redox-sensitive transcr 74.0 2.3 7.8E-05 34.9 3.3 31 39-71 11-41 (154)
118 3uj3_X DNA-invertase; helix-tu 73.9 0.66 2.3E-05 38.2 0.0 34 39-72 158-191 (193)
119 2cfx_A HTH-type transcriptiona 73.9 3.5 0.00012 32.2 4.2 35 32-66 12-49 (144)
120 2wus_R RODZ, putative uncharac 73.3 3.9 0.00013 31.8 4.3 33 30-62 11-43 (112)
121 1rp3_A RNA polymerase sigma fa 73.0 3.6 0.00012 33.1 4.1 25 38-62 202-226 (239)
122 3lfp_A CSP231I C protein; tran 72.8 4.3 0.00015 29.5 4.2 30 31-60 6-39 (98)
123 1neq_A DNA-binding protein NER 72.8 3.2 0.00011 30.1 3.5 35 27-61 7-44 (74)
124 1hlv_A CENP-B, major centromer 72.7 3 0.0001 31.6 3.5 24 40-63 26-49 (131)
125 2l8n_A Transcriptional repress 71.8 1.9 6.5E-05 31.1 2.1 22 40-61 10-31 (67)
126 2jt1_A PEFI protein; solution 71.7 3.7 0.00013 30.7 3.6 33 31-63 10-48 (77)
127 2htj_A P fimbrial regulatory p 71.6 4.9 0.00017 28.6 4.2 26 38-63 13-38 (81)
128 3t72_q RNA polymerase sigma fa 71.2 4 0.00014 31.5 3.9 24 39-62 39-62 (99)
129 3neu_A LIN1836 protein; struct 70.9 3 0.0001 32.5 3.2 36 39-74 36-76 (125)
130 2hxi_A Putative transcriptiona 70.6 3.5 0.00012 34.6 3.7 56 3-58 3-68 (241)
131 1y9q_A Transcriptional regulat 70.6 3.7 0.00013 33.1 3.7 33 30-62 15-47 (192)
132 1i3j_A I-TEVI, intron-associat 70.5 3.3 0.00011 33.6 3.4 32 36-70 80-111 (116)
133 3frw_A Putative Trp repressor 70.2 3.3 0.00011 33.5 3.3 35 39-73 58-92 (107)
134 2w25_A Probable transcriptiona 70.0 4.7 0.00016 31.5 4.1 32 32-63 14-45 (150)
135 3hh0_A Transcriptional regulat 70.0 4.1 0.00014 33.1 3.9 28 39-67 4-31 (146)
136 1sfx_A Conserved hypothetical 69.9 5.6 0.00019 28.1 4.2 31 33-63 28-58 (109)
137 3gp4_A Transcriptional regulat 69.7 5.7 0.0002 32.1 4.7 32 39-71 2-33 (142)
138 2k27_A Paired box protein PAX- 69.7 2.2 7.5E-05 33.7 2.2 25 39-63 41-65 (159)
139 2heo_A Z-DNA binding protein 1 69.6 4.6 0.00016 28.6 3.6 25 39-63 25-49 (67)
140 1u8b_A ADA polyprotein; protei 69.5 3.5 0.00012 31.7 3.2 36 31-66 81-121 (133)
141 3rqi_A Response regulator prot 69.3 3.5 0.00012 32.3 3.2 39 28-66 142-183 (184)
142 3kor_A Possible Trp repressor; 69.2 3.5 0.00012 33.9 3.3 35 39-73 75-109 (119)
143 1ft9_A Carbon monoxide oxidati 67.6 3.5 0.00012 33.1 3.0 49 38-86 162-213 (222)
144 2r0q_C Putative transposon TN5 66.8 3.6 0.00012 34.2 3.0 28 39-66 175-202 (209)
145 1hqc_A RUVB; extended AAA-ATPa 66.7 3.1 0.00011 35.3 2.6 30 36-65 258-290 (324)
146 3ulq_B Transcriptional regulat 66.6 5 0.00017 29.9 3.5 28 38-65 43-74 (90)
147 1u78_A TC3 transposase, transp 66.2 8.3 0.00028 28.9 4.7 27 39-65 77-105 (141)
148 3fym_A Putative uncharacterize 66.2 5.9 0.0002 31.0 4.0 31 31-61 8-38 (130)
149 1p4w_A RCSB; solution structur 66.1 5 0.00017 30.7 3.4 30 37-66 47-80 (99)
150 3ktp_B Trinucleotide repeat-co 65.6 2 6.8E-05 26.4 0.8 15 153-167 7-21 (22)
151 2d1h_A ST1889, 109AA long hypo 65.3 4.1 0.00014 28.9 2.7 26 38-63 35-60 (109)
152 1ixc_A CBNR, LYSR-type regulat 64.8 5.6 0.00019 32.2 3.7 27 39-65 15-45 (294)
153 2dg6_A Putative transcriptiona 64.1 9 0.00031 33.5 5.1 31 40-71 1-31 (222)
154 2q1z_A RPOE, ECF SIGE; ECF sig 64.0 1.4 4.8E-05 34.5 -0.1 26 37-62 149-174 (184)
155 2kfs_A Conserved hypothetical 64.0 4.4 0.00015 34.3 3.0 27 39-65 31-57 (148)
156 2ao9_A Phage protein; structur 63.7 5.5 0.00019 33.7 3.6 24 39-62 48-71 (155)
157 2cob_A LCOR protein; MLR2, KIA 63.4 20 0.00067 27.2 6.2 52 24-75 9-68 (70)
158 2w7n_A TRFB transcriptional re 63.2 6 0.00021 31.2 3.5 32 28-59 21-54 (101)
159 1ojl_A Transcriptional regulat 62.9 4.1 0.00014 35.8 2.7 25 37-61 279-303 (304)
160 3b73_A PHIH1 repressor-like pr 62.7 6 0.00021 31.3 3.4 33 31-63 19-53 (111)
161 1nd9_A Translation initiation 62.0 4.4 0.00015 26.3 2.1 25 41-65 4-28 (49)
162 1q06_A Transcriptional regulat 60.8 9.6 0.00033 30.3 4.3 31 40-71 1-31 (135)
163 1zx4_A P1 PARB, plasmid partit 60.6 6.7 0.00023 34.1 3.6 27 37-63 22-48 (192)
164 3qao_A LMO0526 protein, MERR-l 60.3 8.2 0.00028 34.0 4.2 31 39-71 3-33 (249)
165 3cuo_A Uncharacterized HTH-typ 59.9 7.7 0.00026 27.4 3.3 25 39-63 38-62 (99)
166 2l0k_A Stage III sporulation p 59.3 9.7 0.00033 29.3 4.0 24 39-62 20-43 (93)
167 2y75_A HTH-type transcriptiona 59.2 11 0.00036 28.9 4.2 32 32-63 16-50 (129)
168 1l0o_C Sigma factor; bergerat 59.1 2 6.8E-05 34.5 0.0 26 37-62 212-237 (243)
169 3dv8_A Transcriptional regulat 59.0 7.4 0.00025 30.7 3.3 47 38-85 168-217 (220)
170 1ub9_A Hypothetical protein PH 58.1 8.7 0.0003 27.1 3.3 30 34-63 25-54 (100)
171 1y0u_A Arsenical resistance op 57.9 8.4 0.00029 28.0 3.3 25 39-63 43-67 (96)
172 2ofy_A Putative XRE-family tra 57.9 10 0.00034 26.5 3.6 28 32-61 22-49 (86)
173 3hhg_A Transcriptional regulat 57.9 12 0.0004 30.5 4.5 37 29-65 3-47 (306)
174 3clo_A Transcriptional regulat 57.7 9.4 0.00032 32.5 4.0 26 37-62 210-235 (258)
175 3e6c_C CPRK, cyclic nucleotide 57.5 8.6 0.00029 31.4 3.6 48 38-86 176-226 (250)
176 2p5t_A Putative transcriptiona 57.1 2.2 7.7E-05 34.0 0.0 34 30-65 5-38 (158)
177 3bs3_A Putative DNA-binding pr 56.7 20 0.0007 23.9 4.9 41 26-66 21-65 (76)
178 3bdn_A Lambda repressor; repre 56.6 7.5 0.00026 32.1 3.1 32 31-62 22-53 (236)
179 3bpv_A Transcriptional regulat 56.1 14 0.00046 27.3 4.2 30 34-63 38-67 (138)
180 3ihu_A Transcriptional regulat 55.9 6.8 0.00023 32.5 2.8 36 39-74 39-78 (222)
181 2b0l_A GTP-sensing transcripti 55.6 8.4 0.00029 29.5 3.0 52 8-63 5-67 (102)
182 2ev1_A Hypothetical protein RV 55.4 8.3 0.00028 34.4 3.4 29 41-69 80-108 (222)
183 1on2_A Transcriptional regulat 55.0 14 0.00048 28.1 4.2 37 38-74 21-61 (142)
184 1q1h_A TFE, transcription fact 54.5 8.2 0.00028 28.6 2.8 25 39-63 33-57 (110)
185 2lkp_A Transcriptional regulat 54.5 14 0.00049 27.4 4.1 27 39-65 45-74 (119)
186 1xn7_A Hypothetical protein YH 54.4 15 0.00052 27.3 4.2 29 34-62 11-39 (78)
187 3tqn_A Transcriptional regulat 54.2 9.1 0.00031 29.2 3.0 23 41-63 35-57 (113)
188 2og0_A Excisionase; protein-DN 54.1 6.7 0.00023 27.7 2.1 26 40-65 3-30 (52)
189 4ham_A LMO2241 protein; struct 54.0 9 0.00031 29.9 3.0 25 39-63 37-62 (134)
190 1oyi_A Double-stranded RNA-bin 53.6 7.5 0.00026 29.8 2.5 26 38-63 29-54 (82)
191 2xi8_A Putative transcription 53.6 30 0.001 22.2 5.2 40 27-66 13-56 (66)
192 3r0a_A Putative transcriptiona 53.5 12 0.0004 28.9 3.6 24 40-63 43-66 (123)
193 1adr_A P22 C2 repressor; trans 53.4 27 0.00093 23.2 5.1 40 27-66 17-60 (76)
194 2r1j_L Repressor protein C2; p 52.5 29 0.001 22.4 5.0 40 27-66 17-60 (68)
195 1qpz_A PURA, protein (purine n 52.0 10 0.00034 32.4 3.3 22 41-62 2-23 (340)
196 3bro_A Transcriptional regulat 52.0 18 0.00061 26.7 4.3 31 39-69 50-84 (141)
197 1y7y_A C.AHDI; helix-turn-heli 51.9 31 0.0011 22.8 5.1 43 24-66 22-68 (74)
198 1hw1_A FADR, fatty acid metabo 51.9 10 0.00034 31.5 3.2 33 39-71 30-67 (239)
199 4a0z_A Transcription factor FA 51.8 17 0.00057 30.9 4.6 36 31-66 18-53 (190)
200 3gpv_A Transcriptional regulat 51.7 12 0.00042 30.2 3.6 32 39-71 16-47 (148)
201 2h8r_A Hepatocyte nuclear fact 51.5 11 0.00039 33.6 3.6 31 31-61 36-66 (221)
202 3nrv_A Putative transcriptiona 51.4 17 0.00059 27.2 4.2 43 27-69 36-88 (148)
203 2a6c_A Helix-turn-helix motif; 51.3 28 0.00095 24.5 5.1 43 24-66 27-74 (83)
204 2nnn_A Probable transcriptiona 51.3 18 0.00062 26.5 4.2 36 28-63 35-76 (140)
205 2b5a_A C.BCLI; helix-turn-heli 51.2 32 0.0011 22.9 5.2 42 25-66 20-65 (77)
206 3by6_A Predicted transcription 51.2 9.6 0.00033 29.8 2.8 33 41-73 37-73 (126)
207 2hsg_A Glucose-resistance amyl 51.1 9 0.00031 32.5 2.8 20 41-60 4-23 (332)
208 2x4h_A Hypothetical protein SS 51.1 12 0.0004 28.3 3.2 25 39-63 31-55 (139)
209 2a61_A Transcriptional regulat 50.8 18 0.00062 26.8 4.2 28 36-63 44-71 (145)
210 1u3e_M HNH homing endonuclease 50.4 11 0.00037 31.0 3.1 23 40-62 136-158 (174)
211 2jrt_A Uncharacterized protein 50.2 15 0.0005 28.4 3.6 33 31-63 39-73 (95)
212 3bdd_A Regulatory protein MARR 50.1 19 0.00066 26.5 4.2 34 36-69 42-79 (142)
213 2h09_A Transcriptional regulat 50.1 18 0.00061 28.0 4.2 37 38-74 53-93 (155)
214 2fjr_A Repressor protein CI; g 49.8 19 0.00066 28.6 4.4 29 34-62 14-43 (189)
215 3bru_A Regulatory protein, TET 49.5 11 0.00036 29.3 2.8 20 38-57 49-68 (222)
216 2fu4_A Ferric uptake regulatio 49.3 19 0.00064 25.3 3.9 26 38-63 32-62 (83)
217 2l1p_A DNA-binding protein SAT 49.1 20 0.0007 28.0 4.3 41 29-71 24-64 (83)
218 1v4r_A Transcriptional repress 49.0 7.4 0.00025 28.7 1.7 23 41-63 37-59 (102)
219 3npi_A TETR family regulatory 49.0 16 0.00055 29.5 3.9 25 36-60 35-59 (251)
220 2fa5_A Transcriptional regulat 48.9 20 0.00068 27.3 4.2 34 36-69 60-97 (162)
221 2wiu_B HTH-type transcriptiona 48.7 24 0.00083 24.3 4.3 43 24-66 21-67 (88)
222 3fzv_A Probable transcriptiona 48.7 12 0.00042 30.4 3.2 39 28-66 3-49 (306)
223 2rdp_A Putative transcriptiona 48.6 20 0.0007 26.8 4.2 28 36-63 53-80 (150)
224 2fbh_A Transcriptional regulat 48.6 19 0.00067 26.6 4.0 28 36-63 49-76 (146)
225 2hr3_A Probable transcriptiona 48.4 21 0.00073 26.6 4.3 27 37-63 48-74 (147)
226 3plo_X DNA-invertase; resolvas 48.3 3.7 0.00013 33.8 0.0 26 39-64 158-183 (193)
227 3szp_A Transcriptional regulat 48.3 16 0.00055 29.1 3.7 27 39-65 15-45 (291)
228 2ek5_A Predicted transcription 48.2 13 0.00044 29.3 3.1 26 39-64 27-53 (129)
229 3k2z_A LEXA repressor; winged 48.0 19 0.00064 29.6 4.2 26 38-63 23-48 (196)
230 3qq6_A HTH-type transcriptiona 47.2 26 0.0009 24.4 4.4 42 25-66 20-66 (78)
231 3kjx_A Transcriptional regulat 47.0 10 0.00036 32.4 2.6 40 27-66 9-55 (344)
232 3e97_A Transcriptional regulat 47.0 11 0.00036 30.2 2.5 47 38-85 174-223 (231)
233 2pg4_A Uncharacterized protein 46.9 18 0.0006 26.1 3.5 29 39-67 30-62 (95)
234 3h5t_A Transcriptional regulat 46.8 9.8 0.00034 32.9 2.4 20 41-60 11-30 (366)
235 3t76_A VANU, transcriptional r 46.7 32 0.0011 25.5 4.9 43 24-66 33-78 (88)
236 2oqg_A Possible transcriptiona 46.4 21 0.00073 25.9 3.9 27 37-63 32-58 (114)
237 3c7j_A Transcriptional regulat 46.1 13 0.00046 31.6 3.1 36 39-74 49-88 (237)
238 3sxy_A Transcriptional regulat 46.0 12 0.00042 30.8 2.8 36 39-74 35-74 (218)
239 3f6w_A XRE-family like protein 45.9 36 0.0012 23.3 4.9 42 25-66 24-69 (83)
240 3hug_A RNA polymerase sigma fa 45.7 16 0.00054 26.4 3.1 39 28-66 53-91 (92)
241 1j5y_A Transcriptional regulat 45.5 21 0.00071 29.3 4.1 24 40-63 37-60 (187)
242 3dkw_A DNR protein; CRP-FNR, H 45.5 11 0.00036 29.9 2.2 37 38-74 177-216 (227)
243 3omt_A Uncharacterized protein 45.4 40 0.0014 22.6 4.9 41 26-66 19-63 (73)
244 1s3j_A YUSO protein; structura 45.2 17 0.00057 27.4 3.2 26 38-63 50-75 (155)
245 2gxg_A 146AA long hypothetical 45.1 22 0.00075 26.4 3.9 25 39-63 50-74 (146)
246 2qtq_A Transcriptional regulat 45.0 13 0.00045 28.3 2.7 23 37-59 34-56 (213)
247 2di3_A Bacterial regulatory pr 45.0 15 0.0005 30.8 3.2 32 39-70 27-65 (239)
248 1x57_A Endothelial differentia 44.8 15 0.0005 26.1 2.7 42 24-65 22-67 (91)
249 2k02_A Ferrous iron transport 44.7 21 0.00071 27.4 3.7 30 34-63 11-40 (87)
250 1vz0_A PARB, chromosome partit 44.7 23 0.00079 30.6 4.4 30 37-66 132-161 (230)
251 1pm6_A Excisionase; antiparall 44.7 14 0.00047 27.7 2.6 26 40-65 3-30 (72)
252 2ewt_A BLDD, putative DNA-bind 44.4 47 0.0016 21.8 5.1 42 25-66 18-65 (71)
253 2eby_A Putative HTH-type trans 44.2 43 0.0015 24.5 5.3 43 24-66 20-66 (113)
254 2fbi_A Probable transcriptiona 44.0 22 0.00076 26.1 3.7 32 38-69 49-84 (142)
255 3s8q_A R-M controller protein; 43.9 47 0.0016 22.7 5.2 43 24-66 20-66 (82)
256 2eth_A Transcriptional regulat 43.8 26 0.00089 26.7 4.2 26 38-63 57-82 (154)
257 2k9q_A Uncharacterized protein 43.8 38 0.0013 23.1 4.7 40 27-66 14-57 (77)
258 3b7h_A Prophage LP1 protein 11 43.8 45 0.0015 22.3 5.0 41 26-66 18-63 (78)
259 3szt_A QCSR, quorum-sensing co 43.8 17 0.00059 30.7 3.4 40 26-65 173-220 (237)
260 3cjn_A Transcriptional regulat 43.6 21 0.00073 27.2 3.6 25 39-63 66-90 (162)
261 3eco_A MEPR; mutlidrug efflux 43.6 22 0.00075 26.3 3.6 25 39-63 47-71 (139)
262 2guz_B Mitochondrial import in 43.6 19 0.00065 26.1 3.1 15 40-54 1-15 (65)
263 1jgs_A Multiple antibiotic res 43.4 28 0.00096 25.6 4.2 28 36-63 45-72 (138)
264 4ev0_A Transcription regulator 43.2 16 0.00053 28.7 2.9 46 38-84 162-210 (216)
265 2oa4_A SIR5; structure, struct 43.2 17 0.00056 28.9 3.0 33 31-63 40-74 (101)
266 1l3l_A Transcriptional activat 43.1 19 0.00063 30.1 3.5 29 37-65 186-218 (234)
267 3ech_A MEXR, multidrug resista 42.9 22 0.00074 26.6 3.5 28 36-63 48-75 (142)
268 1jhf_A LEXA repressor; LEXA SO 42.8 25 0.00087 28.6 4.2 27 34-60 18-47 (202)
269 1ku9_A Hypothetical protein MJ 42.8 16 0.00053 27.0 2.7 25 39-63 41-65 (152)
270 3cta_A Riboflavin kinase; stru 42.8 24 0.00084 29.5 4.2 33 40-72 28-60 (230)
271 2qww_A Transcriptional regulat 42.6 23 0.00077 26.7 3.6 25 39-63 55-79 (154)
272 2q0o_A Probable transcriptiona 42.6 19 0.00066 30.0 3.5 29 37-65 188-220 (236)
273 1j1v_A Chromosomal replication 42.6 26 0.00089 26.7 3.9 32 31-62 38-70 (94)
274 3tgn_A ADC operon repressor AD 42.5 24 0.00083 26.2 3.7 43 27-69 34-85 (146)
275 3ryp_A Catabolite gene activat 42.2 17 0.00058 28.4 2.9 36 38-73 166-204 (210)
276 1lj9_A Transcriptional regulat 42.0 24 0.00081 26.2 3.6 30 34-63 38-67 (144)
277 1yio_A Response regulatory pro 41.4 26 0.0009 27.3 3.9 28 39-66 157-188 (208)
278 3cec_A Putative antidote prote 41.4 41 0.0014 24.3 4.8 41 26-66 29-73 (104)
279 3g3z_A NMB1585, transcriptiona 41.2 31 0.0011 25.8 4.2 28 36-63 42-69 (145)
280 2oz6_A Virulence factor regula 41.1 18 0.0006 28.2 2.9 36 38-73 163-201 (207)
281 3kz3_A Repressor protein CI; f 40.9 50 0.0017 22.7 4.9 41 26-66 23-67 (80)
282 3bj6_A Transcriptional regulat 40.9 25 0.00086 26.3 3.6 25 39-63 54-78 (152)
283 3oop_A LIN2960 protein; protei 40.8 26 0.00088 26.2 3.7 28 36-63 48-75 (143)
284 2pex_A Transcriptional regulat 40.8 25 0.00087 26.5 3.6 26 38-63 60-85 (153)
285 2fmy_A COOA, carbon monoxide o 40.7 21 0.00072 28.3 3.3 46 38-84 166-215 (220)
286 2qvo_A Uncharacterized protein 39.9 18 0.00061 26.2 2.6 24 40-63 31-54 (95)
287 3jth_A Transcription activator 39.8 19 0.00065 25.9 2.7 27 39-65 36-65 (98)
288 1iuf_A Centromere ABP1 protein 39.7 16 0.00054 29.1 2.4 39 24-62 7-59 (144)
289 3kkc_A TETR family transcripti 39.2 12 0.0004 28.0 1.5 18 39-56 32-49 (177)
290 3trb_A Virulence-associated pr 39.0 51 0.0017 24.9 5.1 42 25-66 24-69 (104)
291 3cdh_A Transcriptional regulat 38.8 27 0.00094 26.4 3.6 25 39-63 57-81 (155)
292 3fiw_A Putative TETR-family tr 38.8 22 0.00076 28.9 3.2 33 24-56 20-62 (211)
293 2kpj_A SOS-response transcript 38.7 51 0.0017 23.5 4.8 43 24-66 18-64 (94)
294 2hoe_A N-acetylglucosamine kin 38.7 33 0.0011 30.8 4.6 48 10-63 10-57 (380)
295 1zyb_A Transcription regulator 38.6 15 0.00051 29.7 2.1 37 38-74 185-224 (232)
296 1lmb_3 Protein (lambda repress 38.5 52 0.0018 22.9 4.8 42 25-66 27-72 (92)
297 3g5g_A Regulatory protein; tra 38.4 56 0.0019 24.1 5.2 43 24-66 37-83 (99)
298 3zym_A Phosphatidylinositol-bi 38.4 42 0.0014 30.6 5.3 42 33-74 225-275 (310)
299 3qkx_A Uncharacterized HTH-typ 38.4 12 0.00041 28.0 1.5 19 39-57 28-46 (188)
300 2wte_A CSA3; antiviral protein 38.3 30 0.001 30.3 4.2 28 36-63 163-190 (244)
301 2rek_A Putative TETR-family tr 38.1 19 0.00066 27.6 2.6 23 36-59 33-55 (199)
302 3mky_B Protein SOPB; partition 38.0 23 0.0008 31.0 3.4 51 34-84 37-92 (189)
303 1z6r_A MLC protein; transcript 38.0 29 0.001 31.2 4.2 33 31-63 22-54 (406)
304 2hs5_A Putative transcriptiona 38.0 19 0.00065 30.5 2.8 36 39-74 51-90 (239)
305 2zcw_A TTHA1359, transcription 37.8 22 0.00074 27.9 2.9 47 38-85 145-194 (202)
306 3h5o_A Transcriptional regulat 37.8 6.9 0.00023 33.5 0.0 23 40-62 5-27 (339)
307 2ict_A Antitoxin HIGA; helix-t 37.7 60 0.0021 22.9 5.1 41 26-66 19-63 (94)
308 2zcx_A SCO7815, TETR-family tr 37.6 22 0.00074 28.9 3.0 21 37-57 41-61 (231)
309 1s4k_A Putative cytoplasmic pr 37.6 24 0.00082 29.2 3.2 41 28-70 5-47 (120)
310 3k0l_A Repressor protein; heli 37.4 30 0.001 26.6 3.7 28 36-63 57-84 (162)
311 2esn_A Probable transcriptiona 37.2 23 0.00077 29.1 3.0 36 29-65 10-54 (310)
312 3s2w_A Transcriptional regulat 37.2 31 0.001 26.4 3.6 33 31-63 56-88 (159)
313 3g1o_A Transcriptional regulat 37.1 21 0.00073 28.9 2.9 23 36-58 60-82 (255)
314 1z05_A Transcriptional regulat 37.1 30 0.001 31.5 4.2 33 31-63 45-77 (429)
315 3la7_A Global nitrogen regulat 36.9 25 0.00087 28.6 3.3 38 38-75 192-232 (243)
316 3n0r_A Response regulator; sig 36.8 30 0.001 30.0 4.0 31 32-62 120-150 (286)
317 3b02_A Transcriptional regulat 36.7 20 0.00069 28.0 2.6 46 38-84 138-186 (195)
318 3bja_A Transcriptional regulat 36.4 21 0.00072 26.1 2.5 25 39-63 47-71 (139)
319 3bqz_B HTH-type transcriptiona 36.2 25 0.00087 26.4 3.0 23 36-58 19-41 (194)
320 3c3w_A Two component transcrip 36.2 35 0.0012 27.5 4.0 28 39-66 164-195 (225)
321 3iwz_A CAP-like, catabolite ac 36.1 24 0.00081 27.9 2.9 36 38-73 186-224 (230)
322 2gau_A Transcriptional regulat 36.0 27 0.00094 27.8 3.3 48 38-86 179-229 (232)
323 3ppb_A Putative TETR family tr 35.8 14 0.00049 27.6 1.5 20 38-57 28-47 (195)
324 3fxq_A LYSR type regulator of 35.6 25 0.00086 28.9 3.1 28 39-66 16-47 (305)
325 3onq_A Regulator of polyketide 35.5 36 0.0012 29.9 4.2 34 30-63 198-233 (262)
326 4aci_A HTH-type transcriptiona 35.4 24 0.00081 26.7 2.7 25 36-60 31-55 (191)
327 1uly_A Hypothetical protein PH 35.4 25 0.00085 29.5 3.1 26 38-63 32-57 (192)
328 3fm5_A Transcriptional regulat 35.4 23 0.0008 26.7 2.7 25 39-63 54-78 (150)
329 3bqz_B HTH-type transcriptiona 35.4 16 0.00055 27.5 1.7 25 42-66 7-35 (194)
330 3lhq_A Acrab operon repressor 35.3 22 0.00074 27.1 2.5 24 36-59 31-54 (220)
331 1u2w_A CADC repressor, cadmium 35.1 34 0.0012 26.0 3.6 27 39-65 56-85 (122)
332 1b4a_A Arginine repressor; hel 35.0 38 0.0013 28.0 4.1 39 31-69 11-54 (149)
333 1r1u_A CZRA, repressor protein 34.8 45 0.0015 24.5 4.1 27 39-65 39-68 (106)
334 2nyx_A Probable transcriptiona 34.6 35 0.0012 26.6 3.6 25 39-63 59-83 (168)
335 3d0s_A Transcriptional regulat 34.5 30 0.001 27.5 3.3 37 39-75 177-216 (227)
336 3vk0_A NHTF, transcriptional r 34.5 64 0.0022 23.9 5.0 43 24-66 30-76 (114)
337 3cwr_A Transcriptional regulat 34.4 23 0.00079 26.7 2.5 24 36-59 34-57 (208)
338 1g4d_A Repressor protein C; pr 34.4 25 0.00084 26.0 2.6 33 40-75 5-39 (69)
339 2gqq_A Leucine-responsive regu 34.3 4 0.00014 32.7 -1.9 31 33-63 21-51 (163)
340 1ic8_A Hepatocyte nuclear fact 34.3 36 0.0012 29.4 4.0 30 31-60 35-64 (194)
341 4hbl_A Transcriptional regulat 34.2 37 0.0013 25.7 3.6 34 36-69 52-89 (149)
342 3vpr_A Transcriptional regulat 34.2 31 0.0011 26.2 3.3 24 36-59 20-43 (190)
343 3q0w_A HTH-type transcriptiona 34.1 21 0.00074 28.5 2.4 20 37-56 62-81 (236)
344 1uxc_A FRUR (1-57), fructose r 34.0 67 0.0023 22.7 4.8 46 29-74 1-57 (65)
345 3knw_A Putative transcriptiona 34.0 30 0.001 26.4 3.1 23 36-58 31-53 (212)
346 4ich_A Transcriptional regulat 33.8 8.7 0.0003 32.8 0.0 32 30-61 34-65 (311)
347 2dk5_A DNA-directed RNA polyme 33.7 26 0.00091 26.5 2.7 26 39-64 36-61 (91)
348 3f1b_A TETR-like transcription 33.5 25 0.00085 26.6 2.5 21 37-57 32-52 (203)
349 2g7l_A TETR-family transcripti 33.4 37 0.0013 28.4 3.9 35 24-58 14-58 (243)
350 1mkm_A ICLR transcriptional re 33.4 41 0.0014 28.5 4.2 25 39-63 23-47 (249)
351 1sgm_A Putative HTH-type trans 33.2 22 0.00076 26.6 2.2 25 50-74 23-48 (191)
352 2pz9_A Putative regulatory pro 33.2 27 0.00092 27.7 2.8 23 36-58 47-69 (226)
353 3eus_A DNA-binding protein; st 33.0 77 0.0026 22.3 5.0 43 24-66 23-69 (86)
354 3dew_A Transcriptional regulat 32.9 26 0.00089 26.3 2.6 24 36-59 25-48 (206)
355 3hsr_A HTH-type transcriptiona 32.8 26 0.00089 26.3 2.6 25 39-63 50-74 (140)
356 2x3m_A Hypothetical protein OR 32.7 8.4 0.00029 34.3 -0.3 13 238-250 61-73 (239)
357 1tbx_A ORF F-93, hypothetical 32.7 36 0.0012 24.4 3.2 25 39-63 22-50 (99)
358 3qkx_A Uncharacterized HTH-typ 32.6 25 0.00085 26.2 2.4 34 42-75 13-51 (188)
359 3jw4_A Transcriptional regulat 32.6 24 0.00081 26.6 2.3 32 38-69 56-91 (148)
360 3kcc_A Catabolite gene activat 32.6 20 0.00069 29.8 2.0 36 39-74 217-255 (260)
361 2d6y_A Putative TETR family re 32.3 37 0.0013 26.5 3.5 23 36-58 25-47 (202)
362 1z91_A Organic hydroperoxide r 32.2 33 0.0011 25.5 3.0 32 39-70 54-89 (147)
363 3kp7_A Transcriptional regulat 32.2 38 0.0013 25.6 3.4 28 36-63 48-75 (151)
364 2w48_A Sorbitol operon regulat 32.1 45 0.0015 29.4 4.3 30 38-67 20-52 (315)
365 3pqk_A Biofilm growth-associat 32.1 30 0.001 25.0 2.8 27 39-65 36-65 (102)
366 1y9q_A Transcriptional regulat 32.1 67 0.0023 25.6 5.0 43 24-66 20-66 (192)
367 3mzy_A RNA polymerase sigma-H 32.1 34 0.0012 25.5 3.1 11 55-65 126-136 (164)
368 1tns_A MU-transposase; DNA-bin 32.1 22 0.00074 26.9 2.0 32 41-75 6-39 (76)
369 2k9l_A RNA polymerase sigma fa 32.1 38 0.0013 24.7 3.3 26 36-61 45-70 (76)
370 1c9b_A General transcription f 32.0 34 0.0012 28.2 3.3 26 38-63 158-183 (207)
371 3ctp_A Periplasmic binding pro 31.9 9.7 0.00033 32.4 0.0 23 41-63 4-26 (330)
372 1r71_A Transcriptional repress 31.9 51 0.0017 27.8 4.4 28 39-66 52-79 (178)
373 2o20_A Catabolite control prot 31.8 9.8 0.00033 32.4 0.0 22 41-62 7-28 (332)
374 2kko_A Possible transcriptiona 31.8 28 0.00096 26.0 2.6 27 39-65 38-67 (108)
375 1ylf_A RRF2 family protein; st 31.8 33 0.0011 27.2 3.1 24 40-63 31-54 (149)
376 2bv6_A MGRA, HTH-type transcri 31.7 27 0.00092 25.9 2.4 31 39-69 51-85 (142)
377 2zcm_A Biofilm operon icaabcd 31.6 31 0.0011 26.2 2.8 21 37-57 25-45 (192)
378 2frh_A SARA, staphylococcal ac 31.6 30 0.001 26.1 2.7 25 39-63 53-77 (127)
379 3ppb_A Putative TETR family tr 31.5 31 0.0011 25.7 2.8 34 42-75 14-52 (195)
380 1rr7_A Middle operon regulator 31.5 46 0.0016 26.7 3.9 29 36-64 89-117 (129)
381 3on4_A Transcriptional regulat 31.4 36 0.0012 25.4 3.1 23 36-58 27-49 (191)
382 2g7s_A Transcriptional regulat 31.3 28 0.00097 25.9 2.5 23 36-58 25-47 (194)
383 3f1b_A TETR-like transcription 31.3 20 0.0007 27.0 1.7 34 42-75 19-57 (203)
384 3dew_A Transcriptional regulat 31.2 17 0.00057 27.4 1.2 25 42-66 13-41 (206)
385 2iu5_A DHAS, YCEG, HTH-type dh 31.0 19 0.00065 27.7 1.5 26 50-75 30-56 (195)
386 1jye_A Lactose operon represso 30.9 10 0.00036 32.7 0.0 24 40-63 4-27 (349)
387 2wv0_A YVOA, HTH-type transcri 30.8 33 0.0011 29.3 3.2 25 39-63 33-58 (243)
388 3dbi_A Sugar-binding transcrip 30.8 10 0.00036 32.2 0.0 22 40-61 4-25 (338)
389 2jvl_A TRMBF1; coactivator, he 30.8 82 0.0028 23.4 5.1 41 26-66 47-91 (107)
390 3f52_A CLP gene regulator (CLG 30.8 79 0.0027 23.2 4.9 43 24-66 37-83 (117)
391 2qwt_A Transcriptional regulat 30.7 28 0.00096 27.0 2.5 23 36-59 30-52 (196)
392 2jj7_A Hemolysin II regulatory 30.7 31 0.0011 26.0 2.7 25 36-60 24-48 (186)
393 1r1t_A Transcriptional repress 30.6 38 0.0013 26.1 3.2 25 39-63 59-83 (122)
394 3qp6_A CVIR transcriptional re 30.4 37 0.0013 29.4 3.4 39 27-65 196-242 (265)
395 3on2_A Probable transcriptiona 30.4 22 0.00075 26.7 1.8 34 43-76 18-56 (199)
396 2fq4_A Transcriptional regulat 30.2 30 0.001 26.6 2.6 23 36-58 29-51 (192)
397 1sfu_A 34L protein; protein/Z- 30.1 39 0.0013 25.7 3.1 19 48-66 23-42 (75)
398 3lwj_A Putative TETR-family tr 30.1 39 0.0013 25.6 3.1 24 36-59 29-52 (202)
399 2q24_A Putative TETR family tr 30.0 29 0.001 26.5 2.5 20 39-58 34-53 (194)
400 2vqe_M 30S ribosomal protein S 30.0 88 0.003 25.6 5.4 55 48-104 22-85 (126)
401 3pas_A TETR family transcripti 30.0 30 0.001 25.8 2.5 24 36-59 25-48 (195)
402 3ccy_A Putative TETR-family tr 30.0 26 0.00089 27.0 2.2 33 43-75 20-57 (203)
403 2ijl_A AGR_C_4647P, molybdenum 30.0 36 0.0012 27.6 3.1 39 28-66 23-69 (135)
404 3gzi_A Transcriptional regulat 30.0 35 0.0012 26.2 2.9 16 50-65 34-49 (218)
405 3f3x_A Transcriptional regulat 29.9 46 0.0016 24.8 3.5 31 41-71 52-82 (144)
406 3dpj_A Transcription regulator 29.9 31 0.0011 26.1 2.6 24 36-59 25-48 (194)
407 3bni_A Putative TETR-family tr 29.8 41 0.0014 26.8 3.4 18 39-56 63-80 (229)
408 2dg8_A Putative TETR-family tr 29.8 23 0.00079 27.2 1.8 26 42-67 14-43 (193)
409 3c2b_A Transcriptional regulat 29.8 41 0.0014 26.0 3.3 25 36-60 32-56 (221)
410 2qko_A Possible transcriptiona 29.8 21 0.0007 27.9 1.6 26 50-75 45-71 (215)
411 3e6m_A MARR family transcripti 29.7 42 0.0014 25.8 3.3 32 39-70 67-102 (161)
412 3egq_A TETR family transcripti 29.6 37 0.0012 25.3 2.9 24 36-59 21-44 (170)
413 4dyq_A Gene 1 protein; GP1, oc 29.6 39 0.0013 26.8 3.2 25 39-63 28-53 (140)
414 1bia_A BIRA bifunctional prote 29.5 42 0.0014 30.0 3.7 31 33-63 13-43 (321)
415 1pb6_A Hypothetical transcript 29.5 40 0.0014 25.7 3.1 21 37-57 36-56 (212)
416 3zyl_A Phosphatidylinositol-bi 29.2 26 0.00089 31.4 2.3 35 33-67 225-268 (271)
417 3bil_A Probable LACI-family tr 29.1 12 0.0004 32.4 0.0 23 40-62 9-31 (348)
418 3vp5_A Transcriptional regulat 29.1 21 0.00072 27.7 1.5 17 50-66 29-45 (189)
419 2bnm_A Epoxidase; oxidoreducta 28.9 85 0.0029 24.9 5.1 42 24-65 19-65 (198)
420 2zkz_A Transcriptional repress 28.9 53 0.0018 24.0 3.6 29 38-66 40-68 (99)
421 3lwj_A Putative TETR-family tr 28.7 22 0.00074 27.1 1.5 34 42-75 17-55 (202)
422 3rd3_A Probable transcriptiona 28.7 34 0.0012 25.6 2.6 21 36-56 27-47 (197)
423 3fx3_A Cyclic nucleotide-bindi 28.7 33 0.0011 27.4 2.6 52 38-91 175-231 (237)
424 3nrg_A TETR family transcripti 28.7 26 0.00087 26.9 1.9 27 50-76 30-57 (217)
425 3jvd_A Transcriptional regulat 28.6 12 0.00041 32.1 0.0 21 41-61 8-28 (333)
426 3e3m_A Transcriptional regulat 28.5 12 0.00041 32.3 0.0 20 41-60 14-33 (355)
427 4b8x_A SCO5413, possible MARR- 28.5 33 0.0011 26.5 2.6 24 40-63 52-75 (147)
428 3him_A Probable transcriptiona 28.5 33 0.0011 26.0 2.4 27 50-76 33-60 (211)
429 3bwg_A Uncharacterized HTH-typ 28.5 39 0.0013 28.7 3.2 25 39-63 28-53 (239)
430 3kkc_A TETR family transcripti 28.1 35 0.0012 25.4 2.5 34 42-75 17-55 (177)
431 1pdn_C Protein (PRD paired); p 28.0 28 0.00095 25.1 1.9 33 32-64 82-128 (128)
432 3qqa_A CMER; alpha-helical, he 28.0 29 0.001 26.5 2.1 27 50-76 36-63 (216)
433 3frq_A Repressor protein MPHR( 28.0 37 0.0013 25.9 2.7 24 36-59 25-48 (195)
434 4fx0_A Probable transcriptiona 28.0 42 0.0014 26.1 3.0 30 40-69 53-85 (148)
435 3o60_A LIN0861 protein; PSI, M 27.9 22 0.00077 28.1 1.5 20 39-58 40-59 (185)
436 3kz9_A SMCR; transcriptional r 27.9 22 0.00075 26.8 1.4 16 50-65 34-49 (206)
437 3gzi_A Transcriptional regulat 27.9 28 0.00097 26.7 2.0 25 36-60 34-58 (218)
438 3bhq_A Transcriptional regulat 27.9 45 0.0016 25.9 3.3 23 36-58 29-51 (211)
439 3isp_A HTH-type transcriptiona 27.8 32 0.0011 28.1 2.4 38 28-65 5-50 (303)
440 1x2m_A LAG1 longevity assuranc 27.8 86 0.0029 22.6 4.5 31 30-60 11-49 (64)
441 2obp_A Putative DNA-binding pr 27.8 47 0.0016 25.8 3.3 25 39-63 36-60 (96)
442 1sgm_A Putative HTH-type trans 27.8 33 0.0011 25.6 2.4 26 36-61 23-48 (191)
443 2hku_A A putative transcriptio 27.7 55 0.0019 25.4 3.7 15 50-65 37-51 (215)
444 2dg7_A Putative transcriptiona 27.6 33 0.0011 26.1 2.4 26 36-61 24-49 (195)
445 1zk8_A Transcriptional regulat 27.5 20 0.0007 26.9 1.1 20 37-56 26-45 (183)
446 3knw_A Putative transcriptiona 27.5 23 0.0008 27.0 1.5 24 43-66 20-47 (212)
447 3s5r_A Transcriptional regulat 27.4 32 0.0011 26.3 2.3 24 36-59 27-50 (216)
448 3he0_A Transcriptional regulat 27.4 23 0.0008 26.7 1.4 16 50-65 28-43 (196)
449 1t33_A Putative transcriptiona 27.4 53 0.0018 25.4 3.5 22 36-58 29-50 (224)
450 1b0n_A Protein (SINR protein); 27.4 84 0.0029 22.5 4.4 41 26-66 12-57 (111)
451 3dcf_A Transcriptional regulat 27.4 41 0.0014 25.7 2.8 23 36-58 48-70 (218)
452 3geu_A Intercellular adhesion 27.3 30 0.001 26.1 2.1 21 36-56 20-40 (189)
453 3ivp_A Putative transposon-rel 27.3 99 0.0034 23.0 5.0 43 24-66 21-67 (126)
454 2qko_A Possible transcriptiona 27.2 34 0.0011 26.6 2.4 25 36-60 45-69 (215)
455 2guh_A Putative TETR-family tr 27.2 36 0.0012 27.1 2.6 18 39-56 59-76 (214)
456 3op9_A PLI0006 protein; struct 27.0 74 0.0025 23.3 4.1 43 24-66 18-64 (114)
457 3loc_A HTH-type transcriptiona 27.0 29 0.001 26.3 2.0 24 36-59 35-58 (212)
458 2rae_A Transcriptional regulat 26.9 37 0.0013 25.9 2.6 24 36-59 34-57 (207)
459 3deu_A Transcriptional regulat 26.9 54 0.0019 25.6 3.6 31 39-69 68-102 (166)
460 2xrn_A HTH-type transcriptiona 26.8 50 0.0017 28.0 3.6 25 39-63 21-45 (241)
461 3rd3_A Probable transcriptiona 26.8 25 0.00084 26.5 1.5 33 43-75 16-53 (197)
462 3pxp_A Helix-turn-helix domain 26.7 61 0.0021 29.3 4.3 24 38-61 24-47 (292)
463 3edp_A LIN2111 protein; APC883 26.7 42 0.0014 28.6 3.1 33 39-71 32-69 (236)
464 2i10_A Putative TETR transcrip 26.6 53 0.0018 25.5 3.5 23 36-58 28-50 (202)
465 2zb9_A Putative transcriptiona 26.5 47 0.0016 25.7 3.1 24 36-59 40-63 (214)
466 1z7u_A Hypothetical protein EF 26.4 51 0.0017 24.6 3.2 33 38-70 34-71 (112)
467 3u3w_A Transcriptional activat 26.4 43 0.0015 27.5 3.0 28 31-59 10-37 (293)
468 1o5l_A Transcriptional regulat 26.3 14 0.00048 29.5 0.0 37 38-74 163-202 (213)
469 3kz9_A SMCR; transcriptional r 26.2 45 0.0016 25.0 2.9 24 36-59 34-57 (206)
470 3mvp_A TETR/ACRR transcription 26.1 38 0.0013 25.8 2.4 23 36-58 43-65 (217)
471 3mlf_A Transcriptional regulat 26.0 80 0.0027 23.7 4.3 43 24-66 32-78 (111)
472 2q24_A Putative TETR family tr 26.0 29 0.00099 26.6 1.8 33 42-75 20-57 (194)
473 3dcf_A Transcriptional regulat 26.0 26 0.00089 26.8 1.5 34 42-75 36-74 (218)
474 3nqo_A MARR-family transcripti 25.9 71 0.0024 25.6 4.2 25 39-63 57-81 (189)
475 3b81_A Transcriptional regulat 25.9 38 0.0013 25.6 2.4 16 50-65 28-43 (203)
476 3b81_A Transcriptional regulat 25.9 26 0.00089 26.5 1.5 23 36-58 28-50 (203)
477 2eh3_A Transcriptional regulat 25.9 26 0.00089 26.5 1.5 22 36-57 19-40 (179)
478 1zk8_A Transcriptional regulat 25.8 40 0.0014 25.3 2.5 34 42-75 13-51 (183)
479 2hyt_A TETR-family transcripti 25.8 47 0.0016 25.6 3.0 27 50-76 29-56 (197)
480 3col_A Putative transcription 25.7 38 0.0013 25.3 2.3 22 36-57 27-48 (196)
481 1pb6_A Hypothetical transcript 25.7 29 0.00099 26.5 1.7 34 42-75 23-61 (212)
482 3vp5_A Transcriptional regulat 25.7 45 0.0015 25.8 2.8 24 36-59 29-52 (189)
483 3qbm_A TETR transcriptional re 25.6 39 0.0013 25.4 2.4 21 36-56 24-44 (199)
484 2id3_A Putative transcriptiona 25.5 52 0.0018 26.1 3.3 25 36-60 57-81 (225)
485 3cwr_A Transcriptional regulat 25.4 24 0.00082 26.7 1.2 24 43-66 23-50 (208)
486 3rh2_A Hypothetical TETR-like 25.4 40 0.0014 26.1 2.5 24 36-59 20-43 (212)
487 3dn7_A Cyclic nucleotide bindi 25.2 15 0.00051 28.5 0.0 26 38-63 167-192 (194)
488 3qbm_A TETR transcriptional re 25.2 27 0.00093 26.2 1.5 34 42-75 12-50 (199)
489 2eh3_A Transcriptional regulat 25.2 49 0.0017 25.0 2.9 34 42-75 7-45 (179)
490 3f0c_A TETR-molecule A, transc 25.1 52 0.0018 25.2 3.1 23 36-58 28-50 (216)
491 2rae_A Transcriptional regulat 25.1 30 0.001 26.4 1.7 34 42-75 22-60 (207)
492 3cjd_A Transcriptional regulat 24.9 47 0.0016 25.8 2.9 26 50-75 29-55 (198)
493 4hku_A LMO2814 protein, TETR t 24.9 32 0.0011 26.4 1.8 26 42-67 12-41 (178)
494 3bqy_A Putative TETR family tr 24.8 49 0.0017 26.7 3.0 24 36-59 19-42 (209)
495 3r4k_A Transcriptional regulat 24.8 39 0.0013 29.1 2.5 31 40-70 22-56 (260)
496 2ibd_A Possible transcriptiona 24.7 30 0.001 26.8 1.7 26 42-67 19-48 (204)
497 3he0_A Transcriptional regulat 24.7 42 0.0014 25.2 2.4 23 36-58 28-50 (196)
498 2hxo_A Putative TETR-family tr 24.4 40 0.0014 27.9 2.5 33 24-56 11-53 (237)
499 3eet_A Putative GNTR-family tr 24.3 50 0.0017 28.9 3.2 25 39-63 52-77 (272)
500 2xdn_A HTH-type transcriptiona 24.3 38 0.0013 26.2 2.2 26 42-67 16-45 (210)
No 1
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=96.06 E-value=0.0035 Score=49.24 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=30.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPY 70 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPy 70 (282)
...++++.|.|++.|||.+++-|.||++|..-|+-
T Consensus 36 ~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 36 XAIESTVNEISALANSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred HHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence 33589999999999999999999999999876553
No 2
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=95.98 E-value=0.01 Score=41.95 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=27.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
..++-.+.+||+.|||+.++|.+.++++||.
T Consensus 29 ~~~~gn~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 29 REYDYDLKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp HHTTTCHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999995
No 3
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=95.36 E-value=0.018 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=25.2
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
-...+||+.|||+.++|.+..+++||.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 578999999999999999999999984
No 4
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=95.29 E-value=0.0071 Score=47.56 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=30.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWP 69 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWP 69 (282)
...++++.|.|+..|||.+++-|.||++|..-|+
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHH
Confidence 4458999999999999999999999999986543
No 5
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=95.27 E-value=0.14 Score=38.26 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=44.7
Q ss_pred HHHHhhcC---CcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-----HHHHHh
Q 023462 32 DDISKYFS---LPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-----LSKIAR 102 (282)
Q Consensus 32 edL~~yF~---lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-----l~k~~~ 102 (282)
+-|..+++ +++.++|+.+|||.++|.|++++. |+. |+. .-...+.++++.++. |.+|+.
T Consensus 10 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s--~~~----------~~~~~Rl~~A~~lL~~~~~si~~IA~ 77 (107)
T 2k9s_A 10 QYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGIS--VLS----------WREDQRISQAKLLLSTTRMPIATVGR 77 (107)
T ss_dssp HHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSC--HHH----------HHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcC--HHH----------HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34555554 889999999999999999999986 985 211 111234445555554 677777
Q ss_pred hcCCccC
Q 023462 103 KSGFQPL 109 (282)
Q Consensus 103 ~~~~~~~ 109 (282)
.-||.-.
T Consensus 78 ~~Gf~~~ 84 (107)
T 2k9s_A 78 NVGFDDQ 84 (107)
T ss_dssp HTTCCCH
T ss_pred HhCCCCH
Confidence 7777643
No 6
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.10 E-value=0.026 Score=43.04 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.8
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
.++-.+.+||+.|||+.++|.|+.+++||.
T Consensus 52 ~~~GN~s~AA~~LGISR~TLyrKLkk~gi~ 81 (81)
T 1umq_A 52 MCDRNVSETARRLNMHRRTLQRILAKRSPR 81 (81)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHHTSSCC
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 346678999999999999999999999983
No 7
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=94.97 E-value=0.052 Score=42.11 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=53.9
Q ss_pred HHhhc--CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-----HHHHHhhcC
Q 023462 34 ISKYF--SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-----LSKIARKSG 105 (282)
Q Consensus 34 L~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-----l~k~~~~~~ 105 (282)
|..++ .+++.++|+.+|||.++|.|+|++. |+. |+.- -...+.++++.++. |.+|+..-|
T Consensus 20 i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s--~~~~----------l~~~Rl~~A~~lL~~~~~si~~IA~~~G 87 (129)
T 1bl0_A 20 IEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS--LGQY----------IRSRKMTEIAQKLKESNEPILYLAERYG 87 (129)
T ss_dssp HHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC--HHHH----------HHHHHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred HHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC--HHHH----------HHHHHHHHHHHHHHcCCCCHHHHHHHHC
Confidence 44444 3789999999999999999999997 984 2211 11234455555554 778888888
Q ss_pred CccCCc---ccccccCCCCCCccccc
Q 023462 106 FQPLSN---ETSKLHGVTSPPNLQQQ 128 (282)
Q Consensus 106 ~~~~n~---~~sk~qgv~~~~~~~Qq 128 (282)
|.-.+. .--+.-|++|-+-..+.
T Consensus 88 f~~~s~F~r~Fk~~~G~tP~~yR~~~ 113 (129)
T 1bl0_A 88 FESQQTLTRTFKNYFDVPPHKYRMTN 113 (129)
T ss_dssp CSCHHHHHHHHHHHHSSCHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 875432 22345677765544433
No 8
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.68 E-value=0.026 Score=35.14 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++.++|+.||||.+++++.++++
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 7899999999999999999998865
No 9
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=94.52 E-value=0.28 Score=36.48 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHhhc--CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-------HHHHHhh
Q 023462 34 ISKYF--SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-------LSKIARK 103 (282)
Q Consensus 34 L~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-------l~k~~~~ 103 (282)
|..++ .+++.++|+.+|||.++|.|++++. |+. |+ ..-...+.++++.++. |.+|+.+
T Consensus 11 i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s--~~----------~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~ 78 (108)
T 3mn2_A 11 IEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYS--PM----------AFAKRVRLQHAHNLLSDGATPTTVTAAALS 78 (108)
T ss_dssp HHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSC--HH----------HHHHHHHHHHHHHHHHSSSSCCCHHHHHHH
T ss_pred HHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcC--HH----------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 44444 5689999999999999999999997 884 21 1111234455555543 6777777
Q ss_pred cCCccC
Q 023462 104 SGFQPL 109 (282)
Q Consensus 104 ~~~~~~ 109 (282)
-||.-.
T Consensus 79 ~Gf~~~ 84 (108)
T 3mn2_A 79 CGFSNL 84 (108)
T ss_dssp TTCCCH
T ss_pred hCCCCH
Confidence 777643
No 10
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=94.37 E-value=0.019 Score=43.28 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=25.5
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
++-.+.+||+.|||+.++|.|+.+++||
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHhCc
Confidence 4667889999999999999999999987
No 11
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=94.35 E-value=0.053 Score=42.25 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=27.3
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
..++-.+.+||+.|||+.++|.|+.+++||.
T Consensus 68 ~~~~gn~~~AA~~LGIsR~TL~rkLkk~gi~ 98 (98)
T 1eto_A 68 QYTLGNQTRAALMMGINRGTLRKKLKKYGMN 98 (98)
T ss_dssp HHTTTCHHHHHHHHTSCHHHHHHHHHHTTCC
T ss_pred HHhCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 3456678999999999999999999999983
No 12
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=94.18 E-value=0.22 Score=37.96 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=48.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCccCCc--
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-----LSKIARKSGFQPLSN-- 111 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-----l~k~~~~~~~~~~n~-- 111 (282)
.+++.+.|+.+|||.+.|.|+|++.|+. |+.-+ ...+.++++.+|. |.+|+..-||.-.+.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~G~s--~~~~~----------~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~ 90 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREEETS--YSQLL----------TECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFI 90 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHTTCC--HHHHH----------HHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCC--HHHHH----------HHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHH
Confidence 4679999999999999999999999874 22211 1233444555543 677777777764332
Q ss_pred -ccccccCCCCCCcc
Q 023462 112 -ETSKLHGVTSPPNL 125 (282)
Q Consensus 112 -~~sk~qgv~~~~~~ 125 (282)
.--+.-|++|-+-.
T Consensus 91 r~Fk~~~G~tP~~yr 105 (120)
T 3mkl_A 91 YVFRNYYGMTPTEYQ 105 (120)
T ss_dssp HHHHHHHSSCHHHHH
T ss_pred HHHHHHHCcCHHHHH
Confidence 12244566655433
No 13
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.16 E-value=0.04 Score=35.01 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
++++.++|+.||||.+++.+..+++++
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 689999999999999999999988875
No 14
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=94.02 E-value=0.4 Score=35.73 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=42.0
Q ss_pred HHhhc--CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHH-----HHHHHHhhcC
Q 023462 34 ISKYF--SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELA-----ELSKIARKSG 105 (282)
Q Consensus 34 L~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~ll-----el~k~~~~~~ 105 (282)
|..++ .+++.++|+.+|||.++|.|++++. |+. |+.- -...+.++++.++ -|.+|+..-|
T Consensus 14 i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s--~~~~----------~~~~Rl~~A~~lL~~~~~si~~IA~~~G 81 (108)
T 3oou_A 14 ITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEH--FTDY----------LNRYRVNYAKEELLQTKDNLTIIAGKSG 81 (108)
T ss_dssp HHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSC--HHHH----------HHHHHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC--HHHH----------HHHHHHHHHHHHHHcCCCCHHHHHHHcC
Confidence 44444 5789999999999999999999988 884 2111 1123344444444 2566777777
Q ss_pred Ccc
Q 023462 106 FQP 108 (282)
Q Consensus 106 ~~~ 108 (282)
|.-
T Consensus 82 f~~ 84 (108)
T 3oou_A 82 YTD 84 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 15
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=93.84 E-value=0.49 Score=34.84 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc-CCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN-GLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l-GI~ 66 (282)
.+++.++|+.+|||.++|.|++++. |+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 5789999999999999999999998 984
No 16
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=93.79 E-value=0.44 Score=35.76 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=49.0
Q ss_pred HHHHhhc--CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-----HHHHHhh
Q 023462 32 DDISKYF--SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-----LSKIARK 103 (282)
Q Consensus 32 edL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-----l~k~~~~ 103 (282)
+-|..++ .+++.++|+.+|||..+|.|+|++. |+. |+.-+. ..+.++++.++. |.+|+.+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s--~~~~~~----------~~Rl~~A~~lL~~~~~~i~eIA~~ 81 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTV--PSKYYL----------ELRLNRARQLLQQTSKSIVQIGLA 81 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC--HHHHHH----------HHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC--HHHHHH----------HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3444554 4679999999999999999999998 874 222221 233344444443 5677777
Q ss_pred cCCccCCc---ccccccCCCCCC
Q 023462 104 SGFQPLSN---ETSKLHGVTSPP 123 (282)
Q Consensus 104 ~~~~~~n~---~~sk~qgv~~~~ 123 (282)
-||.-.+. .--+.-|++|-+
T Consensus 82 ~Gf~~~s~F~r~Fk~~~G~tP~~ 104 (113)
T 3oio_A 82 CGFSSGPHFSSTYRNHFNITPRE 104 (113)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHH
T ss_pred HCCCCHHHHHHHHHHHHCcCHHH
Confidence 77764322 122345565443
No 17
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=92.49 E-value=0.054 Score=38.38 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchhhh---h-h-cHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKFLS---G-K-SIEDIKKY 85 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKlkS---L-k-sI~~l~e~ 85 (282)
|...|||+.||||.+||.+..++ |+ |+.++.. . . ...+|.+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~-G~---P~~~~~g~~~~~~y~~~dv~~w 49 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ-GM---PVLRGGGKGNEVLYDSAAVIKW 49 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TC---CCSSCCCSSSCCEEEHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC-CC---CeEeeCCCcceEEECHHHHHHH
Confidence 67899999999999999887665 76 7776654 1 1 35566554
No 18
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.95 E-value=0.2 Score=36.88 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
++++.++|+.|||+.++|.+..+++.
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 68999999999999999999877654
No 19
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.11 E-value=0.16 Score=37.38 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=30.0
Q ss_pred cCHHHHHhhc---CCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 29 LSFDDISKYF---SLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 29 iTledL~~yF---~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
+-..-+..|. ++++.++|+.+|||.++|.+.++++..
T Consensus 10 ~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 10 FKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp HHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 3444555664 689999999999999999999988754
No 20
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=90.79 E-value=0.18 Score=36.76 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=27.8
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcch
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRK 72 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRK 72 (282)
.+++.|+|+.+||++.+|....++.|+.. |.|.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~~gl~~-p~r~ 37 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERRYGFPR-PLRS 37 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHHTCCSC-CBSS
T ss_pred cccHHHHHHHHCcCHHHHHHHHHhCCCCC-CcCC
Confidence 47899999999999999999999888753 5543
No 21
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=90.78 E-value=0.14 Score=33.96 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
++++.|+|+.||||.+++++.+++
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHh
Confidence 789999999999999999998753
No 22
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=90.51 E-value=0.28 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=28.6
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++++.++|+.+||+.+++.++.+
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46678888899999999999999999999876
No 23
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=89.42 E-value=0.45 Score=32.99 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++.+|+|+.||||..+++.+.++
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 899999999999999999887654
No 24
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=89.38 E-value=0.36 Score=32.03 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++++.++|+.+||+.+++.++.+
T Consensus 9 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 35677888899999999999999999999865
No 25
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=89.28 E-value=0.39 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=28.3
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++++.+.|+.+||+.+++.++.+
T Consensus 7 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 7 RLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35677888899999999999999999999865
No 26
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=88.81 E-value=0.44 Score=31.77 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+..++...++++.++|+.+||+.+++.++.+-
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56777888999999999999999999998653
No 27
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=88.71 E-value=1 Score=37.86 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchhhhhhcHHHHHHHHHHHHHHHHH-----HHHHHHhhcCCcc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKFLSGKSIEDIKKYAAREKSKELA-----ELSKIARKSGFQP 108 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKlkSLksI~~l~e~a~~EK~k~ll-----el~k~~~~~~~~~ 108 (282)
.+++.+.|+.+|||.+.|.|+|++.|+. |+.-+. ..+.++++.+| -|.+|+.+-||.-
T Consensus 185 ~~sl~~lA~~~~~S~~~l~r~fk~~G~t--~~~~l~----------~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~ 247 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELESRGVK--FRELIN----------SIRISYSISLMKTGEFKIKQIAYQSGFAS 247 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHTTTCC--HHHHHH----------HHHHHHHHHHHHHTCCCHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCC--HHHHHH----------HHHHHHHHHHHhCCCCCHHHHHHHhCCCC
Confidence 4789999999999999999999998874 332222 23344444444 3667777777764
No 28
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=88.66 E-value=0.43 Score=32.84 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=30.0
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.--++++.++|+.+||+.+++-++.+-
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 578889999999999999999999999998864
No 29
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=88.46 E-value=0.57 Score=32.89 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=28.5
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.++|+.+||+.+++.++.+
T Consensus 16 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 16 AMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 45677788899999999999999999999887
No 30
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=88.38 E-value=0.48 Score=32.35 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=27.9
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.++|+.+||+.+++.++.+
T Consensus 14 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 14 TLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 35667788899999999999999999999875
No 31
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=88.38 E-value=0.43 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=28.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.++|+.+||+.+++.++++
T Consensus 11 ~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 11 HLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35677788899999999999999999999875
No 32
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=88.11 E-value=1.8 Score=36.64 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHhhc--CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHHH-----HHHHHhhc
Q 023462 33 DISKYF--SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELAE-----LSKIARKS 104 (282)
Q Consensus 33 dL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~lle-----l~k~~~~~ 104 (282)
-|..++ .+++.+.|+.+|||..+|.|++++. |+. |+.-+. ..+.++++.+|. |.+|+.+-
T Consensus 11 ~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s--~~~~~~----------~~Rl~~a~~~L~~~~~~i~~ia~~~ 78 (292)
T 1d5y_A 11 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHA--IGAYIR----------ARRLSKSAVALRLTARPILDIALQY 78 (292)
T ss_dssp HHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSC--HHHHHH----------HHHHHHHHHHHHHCCCCHHHHHHHT
T ss_pred HHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC--HHHHHH----------HHHHHHHHHHHhcCCCCHHHHHHHc
Confidence 344554 5789999999999999999999987 874 222221 233444443332 66777777
Q ss_pred CCcc
Q 023462 105 GFQP 108 (282)
Q Consensus 105 ~~~~ 108 (282)
||.-
T Consensus 79 Gf~~ 82 (292)
T 1d5y_A 79 RFDS 82 (292)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 7764
No 33
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=87.99 E-value=0.47 Score=33.05 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=28.4
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+.+++...++.+.++|+.+||+.+++.++.+
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35678888899999999999999999999875
No 34
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=87.95 E-value=0.49 Score=32.12 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.1
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++++.++|+.+||+.+++.++.+
T Consensus 9 ~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 9 RIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35677788899999999999999999999865
No 35
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=87.94 E-value=0.62 Score=31.53 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.8
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++..|+|+.||||..+++++.++
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44899999999999999999987765
No 36
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=87.91 E-value=0.44 Score=33.56 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcch
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRK 72 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRK 72 (282)
+..++...+|++.+.|+.+||+.+++.++.+ |- +-|...
T Consensus 16 lr~~R~~~gltq~elA~~~gvs~~tis~~E~--G~-~~p~~~ 54 (73)
T 3fmy_A 16 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEK--GN-AXPHPS 54 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHHHT--TS-SCCCHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc--CC-CCCCHH
Confidence 6677888999999999999999999999865 53 345433
No 37
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=87.84 E-value=0.55 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=27.5
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.++|+.+||+.+++.++.+
T Consensus 17 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 17 RLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35667778899999999999999999998865
No 38
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=87.82 E-value=0.55 Score=31.97 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=30.2
Q ss_pred CcCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 28 SLSFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 28 ~iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.-.+..++...++.+.++|+.+||+.+++.++.+
T Consensus 12 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 12 LNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3467888999999999999999999999998875
No 39
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=87.73 E-value=0.55 Score=32.60 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=28.4
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.++|+.+||+.+++.++.+
T Consensus 14 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 14 LLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 46677888899999999999999999999865
No 40
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.54 E-value=0.6 Score=34.17 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
-+-+++.+|+|+.|||+..++|.+.++
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345899999999999999999976653
No 41
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=87.33 E-value=0.88 Score=31.97 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
+.+++...+ .+.+.|+.|||+.+++-++.+-..+
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 567888899 9999999999999999999886544
No 42
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=87.09 E-value=0.83 Score=33.27 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=28.3
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+++.++.... .+.+||+.|||+.+++-+.||..
T Consensus 5 ~~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 5 LDLKKFVEDK--NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CCHHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhc
Confidence 4677776665 99999999999999999999874
No 43
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=86.36 E-value=0.69 Score=33.02 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=27.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+.+++...++.+.++|+.+||+.+++.++.+
T Consensus 22 ~l~~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 22 VLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35667788899999999999999999988775
No 44
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=85.95 E-value=0.76 Score=33.37 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++...++.+.++|+.+||+.++|.++.+-
T Consensus 13 ~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 13 NLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp HHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 356778888999999999999999999998763
No 45
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=85.93 E-value=0.76 Score=32.63 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=29.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+.+++.--+|.+.++|+.+||+.++|.++.+-
T Consensus 14 ~ik~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 14 RIKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467788889999999999999999999998763
No 46
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=85.90 E-value=1 Score=30.27 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=28.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhC--CChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLG--VCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LG--Vs~T~LKR~CR~ 62 (282)
.+..++...++++.++|+.+| |+.+++.++.+-
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 356777888999999999999 999999988763
No 47
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=85.39 E-value=1 Score=32.26 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=29.3
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++...+|.+.+.|+.+||+.+++.++.+-
T Consensus 17 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 17 VIQQGRQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 466788889999999999999999999998873
No 48
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=85.27 E-value=0.91 Score=33.87 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.8
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.-.++.+.+.|+.+||+.+++.++.+-
T Consensus 13 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 13 NLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467788889999999999999999999888763
No 49
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=85.20 E-value=0.79 Score=32.15 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++..|+|+.||||..+++++.++
T Consensus 30 ~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 30 EHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 799999999999999999886654
No 50
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=85.19 E-value=0.99 Score=32.53 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=29.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++...++++.++|+.+||+.+++.++.+-
T Consensus 12 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 12 IIQESLDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 457778888999999999999999999998873
No 51
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=85.12 E-value=0.9 Score=31.76 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++++.+.|+.+||+.+++.++-+
T Consensus 15 ~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 15 VIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 36677888899999999999999999999854
No 52
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=85.12 E-value=0.82 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=28.3
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++.--+|++.++|+.+||+.+++.++.+
T Consensus 18 ~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 18 LLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 36677788899999999999999999999876
No 53
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=85.00 E-value=1.4 Score=32.69 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
++++++-.+|.- +.++|+.||||..++-+-.+..+|+
T Consensus 1 M~~~~ai~~~G~-~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 1 MKPEELVRHFGD-VEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp CCHHHHHHHHSS-HHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred CcHHHHHHHHCC-HHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 467888888864 9999999999999999987666776
No 54
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=84.86 E-value=0.87 Score=31.99 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+..++.-.++++.++|+.+||+.+++-++.+
T Consensus 17 l~~~r~~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 17 WEKKKNELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4556677799999999999999999998865
No 55
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=84.73 E-value=0.87 Score=34.16 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+.+++.--++++.+.|+.+||+.++|.++++-
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 466778888999999999999999999999873
No 56
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=84.47 E-value=3.7 Score=36.64 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=40.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc-CCCCCCcchhhhhhcHHHHHHHHHHHHHHHHH-----HHHHHHhhcCCccC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN-GLDRWPYRKFLSGKSIEDIKKYAAREKSKELA-----ELSKIARKSGFQPL 109 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l-GI~RWPyRKlkSLksI~~l~e~a~~EK~k~ll-----el~k~~~~~~~~~~ 109 (282)
.+++.+.|+.+|+|.++|.|+|++. |+. |+.- -...+.++++.+| -+.+|+..-||.-.
T Consensus 321 ~~~~~~~a~~~~~s~~~l~r~f~~~~g~s--~~~~----------~~~~r~~~a~~~L~~~~~~i~~ia~~~Gf~~~ 385 (412)
T 4fe7_A 321 GIKVDQVLDAVGISRSNLEKRFKEEVGET--IHAM----------IHAEKLEKARSLLISTTLSINEISQMCGYPSL 385 (412)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSC--HHHH----------HHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC--HHHH----------HHHHHHHHHHHHHhcCCCCHHHHHHHcCCCCH
Confidence 6899999999999999999999998 874 2211 1123344444444 36667777777643
No 57
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=84.47 E-value=1 Score=33.21 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=29.1
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...+|.+.++|+.|||+.+++.++-+
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 57888999999999999999999999999854
No 58
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=84.45 E-value=0.7 Score=35.62 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchh
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKF 73 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKl 73 (282)
+..++.-.+|.+.++|+.|||+.+++.++-+ |. +-|-..+
T Consensus 76 l~~~R~~~glsq~~la~~~g~s~~~i~~~E~--g~-~~p~~~~ 115 (133)
T 3o9x_A 76 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEK--GN-AQPHPST 115 (133)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHHHH--TS-SCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC--CC-CCCCHHH
Confidence 6677889999999999999999999999876 53 3364433
No 59
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=84.30 E-value=0.8 Score=33.79 Aligned_cols=28 Identities=14% Similarity=0.438 Sum_probs=25.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc-CC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN-GL 65 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l-GI 65 (282)
..|+++|||.-||||.++|.+++++. ++
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~~~~~ 43 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEENKNA 43 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHHCTTC
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHcCCCC
Confidence 46789999999999999999999996 44
No 60
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=84.17 E-value=0.78 Score=32.98 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.3
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++|+|+.+|||.+++-|++..-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999999743
No 61
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=83.95 E-value=0.83 Score=30.47 Aligned_cols=25 Identities=4% Similarity=-0.017 Sum_probs=20.6
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+-+++.+|+|+.||||..+++...+
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3489999999999999988775544
No 62
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=83.79 E-value=1 Score=32.86 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=27.2
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+..++...++++.++|+.+||+.+++.++.+
T Consensus 6 l~~~r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5677888899999999999999999998875
No 63
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.33 E-value=0.7 Score=31.59 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=21.6
Q ss_pred CCc----HHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLP----LSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lP----i~EAAr~LGVs~T~LKR~CR~l 63 (282)
+.+ +.++|++|||+.++|.+.++++
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567 9999999999999999887653
No 64
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=83.09 E-value=1 Score=34.06 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=22.6
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++.+|+|+.||||..+++++.++
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999887654
No 65
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=83.06 E-value=1.1 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 33 DISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.++...++++.++|+.+||+.+++.++.+
T Consensus 24 ~~R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 24 KKKNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34466699999999999999999998875
No 66
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=83.06 E-value=1.2 Score=32.03 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=27.8
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...+|++.+.|+.+||+.+++.++.+
T Consensus 18 ~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 18 RLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 45677888899999999999999999998854
No 67
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=82.97 E-value=1.5 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.6
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+.++....+ .+.++|+.|||+.+++-++.|.
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcC
Confidence 4566777778 9999999999999999999874
No 68
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=82.91 E-value=1.3 Score=33.99 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~R 67 (282)
.|++.|+|+.+||++.||....+. |+..
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~-Gll~ 28 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI-GLLV 28 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH-TSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC-CCCC
Confidence 378999999999999999988776 7654
No 69
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=82.83 E-value=1.1 Score=36.14 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=31.1
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc---CCC
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN---GLD 66 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l---GI~ 66 (282)
+..|+...-+|..+.|+.||||.+++.++.++| |+-
T Consensus 9 l~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 456777888999999999999999999999987 753
No 70
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=82.50 E-value=1.4 Score=31.72 Aligned_cols=32 Identities=19% Similarity=0.000 Sum_probs=28.5
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...++.+.+.|+.+||+.+++.++.+
T Consensus 8 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 8 KIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46778888999999999999999999998765
No 71
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=82.19 E-value=1.3 Score=30.83 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.4
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+.+++.+|+|+.|||+..+++...+
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~ 53 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5689999999999999988876554
No 72
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=82.17 E-value=1.4 Score=30.61 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.8
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
++++++..++ +.+.+.|+.|||+.+++-+.+
T Consensus 1 M~~~~~i~~~-~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 1 MYKKDVIDHF-GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp CBHHHHHHHH-SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHc-CCHHHHHHHhCCCHHHHHHHH
Confidence 3567777776 499999999999999998866
No 73
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=81.94 E-value=1.2 Score=32.44 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++.+|+|..||||..+++.+.++
T Consensus 38 ~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999999999998886554
No 74
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=81.84 E-value=0.86 Score=32.15 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=31.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCc-chhhhh-h-cHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPY-RKFLSG-K-SIEDIKKYA 86 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPy-RKlkSL-k-sI~~l~e~a 86 (282)
-+.+.|+|+.||||.+++.+.+++-.+ |. .|+-.. . ...+|++..
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~f---P~piklG~~~~w~~~ev~~Wl 57 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDL---PKAKVIHGRARWLYRDHCEFK 57 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHC---CCSEESSSCEEEEHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCC---CCCEEeCCCeEEeHHHHHHHH
Confidence 367899999999999999999997544 43 444321 1 355555543
No 75
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=81.81 E-value=1.1 Score=32.76 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++.++|+.||||.+|+.+..+++
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999888775
No 76
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=81.73 E-value=1 Score=33.92 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=23.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++.++|+.||||.+|+.+.++++
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 7899999999999999999999875
No 77
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=81.72 E-value=0.91 Score=34.82 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=27.2
Q ss_pred CHH-HHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFD-DISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 Tle-dL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+. +++.-.+|++.+.|+.|||+.+++-++.+
T Consensus 17 ~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 17 ILAEELGFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 444 47788899999999999999999988875
No 78
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=81.40 E-value=1.7 Score=33.18 Aligned_cols=34 Identities=6% Similarity=0.237 Sum_probs=30.3
Q ss_pred CcCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 28 SLSFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 28 ~iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.-.+..++.-.+|.+.++|+.+||+.+++.++.+
T Consensus 25 g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 25 MKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3458899999999999999999999999998876
No 79
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=81.15 E-value=1.4 Score=32.34 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHhhc---CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 34 ISKYF---SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 34 L~~yF---~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|...= .++..|.|+.|||+.+++.++.++|
T Consensus 23 L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 23 LEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555 6899999999999999999988876
No 80
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=80.89 E-value=1.4 Score=31.94 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.5
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+-+++.+|+|+.||||..+++...+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5589999999999999998876654
No 81
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=80.64 E-value=1.6 Score=29.79 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=21.2
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+-+++..|+|+.||||..++++..++
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34789999999999999887766554
No 82
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=80.59 E-value=1.7 Score=34.21 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.3
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+-+++.+|+|+.||||..++|.+.++
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44899999999999999999876654
No 83
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=80.24 E-value=1.7 Score=33.17 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~R 67 (282)
.+++.|+|+.+||++.||....+ .|+..
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~-~Gll~ 29 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDN-IELLN 29 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHH-TTSSC
T ss_pred CccHHHHHHHHCcCHHHHHHHHH-CCCCC
Confidence 37899999999999999998876 67654
No 84
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=80.18 E-value=1.2 Score=35.30 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.|+|+.||||.+++-|+-|-+
T Consensus 58 e~TQREIA~~lGiS~stISRi~r~L 82 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHHHHHH
Confidence 3999999999999999999986655
No 85
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=80.05 E-value=2 Score=32.29 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=25.8
Q ss_pred HHHHhhc---CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYF---SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF---~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+.|...= .++..|.|++|||+.+++.+.-++|
T Consensus 17 ~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 17 KFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444 6899999999999999999887766
No 86
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=80.00 E-value=1.8 Score=34.51 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=27.9
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..|+....+|..|.|+.||||.+++.++.++|
T Consensus 16 l~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666778999999999999999999988876
No 87
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=79.31 E-value=1.7 Score=31.92 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++...++++.+.|+.+||+.+++-++.+-
T Consensus 22 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 22 VIADILDDLDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467778888999999999999999999988753
No 88
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=79.25 E-value=1.9 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..|+...-+|..|.|+.||||.+++.++.++|
T Consensus 33 L~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 33 IKILQNDGKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344556678999999999999999999998876
No 89
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=79.09 E-value=1.9 Score=32.35 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=28.3
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++.--+|.+.+.|+.+||+.++|.++-+
T Consensus 32 ~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 32 VIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 46677888899999999999999999999865
No 90
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=78.68 E-value=2.2 Score=33.10 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.4
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++..|+|+.||||..+++++.++
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45899999999999999999876554
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=78.59 E-value=2.2 Score=31.71 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=21.9
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+-+++.+|+|+.||||..+++...++
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56899999999999999888766543
No 92
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=78.52 E-value=2.2 Score=33.62 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..|+..-.+|..|.|+.||+|.+++.++.++|
T Consensus 14 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 14 KILQNDGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44566668999999999999999999988876
No 93
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=78.52 E-value=0.85 Score=34.02 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.7
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
.++.++|+.|||+.++|.+..+++.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999988863
No 94
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=78.42 E-value=4.2 Score=33.05 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.7
Q ss_pred cCHHHHHhhc--CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 29 LSFDDISKYF--SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 29 iTledL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
++.+.|..+| ++++.++|+.|||+.+++.|+.++
T Consensus 146 ~~~~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 146 IDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp SCHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 3455666555 789999999999999999998764
No 95
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=78.24 E-value=2.1 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc---CCCC
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN---GLDR 67 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l---GI~R 67 (282)
+..|+....+|..|.|+.||||.+++.++.++| |+-+
T Consensus 23 L~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 455667778999999999999999999998876 6654
No 96
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=78.13 E-value=2.2 Score=32.10 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=28.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++..-++.+.++|+.+||+.++|.++.+
T Consensus 25 ~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 25 NMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45677888899999999999999999998865
No 97
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=77.69 E-value=2.6 Score=31.94 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=23.0
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.+..++.-.++++.+.|+.+||+.+++.++
T Consensus 16 ~lk~~R~~~glsq~~lA~~~gis~~~is~~ 45 (126)
T 3ivp_A 16 AIKEARKKQGLTREQVGAMIEIDPRYLTNI 45 (126)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 356677788999999999998887766544
No 98
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=77.66 E-value=3.9 Score=35.37 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=36.3
Q ss_pred CCCCCcCHHHHHh----hcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 24 TSTKSLSFDDISK----YFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 24 ~~~~~iTledL~~----yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.++..++-+.|.. .-++...++|+.|+||.+++.|+.+++|+. +++.
T Consensus 67 grp~~~~~~~i~~~v~~~~~~t~~~ia~~l~vs~~tV~r~L~~~g~~-~k~~ 117 (345)
T 3hot_A 67 KPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKI-QKVG 117 (345)
T ss_dssp CCCCSSCHHHHHHHHHHCSCCCHHHHHHHTTSCHHHHHHHHHHTTCE-EEEC
T ss_pred CCCCcccHHHHHHHHHhCccchHHHHHHHHCCCHHHHHHHHHHhCCe-eecc
Confidence 3444556566654 457899999999999999999999999995 4443
No 99
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=77.63 E-value=2.1 Score=33.37 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=27.0
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..|+....+|..|.|+.||||.+++.++.++|
T Consensus 10 ~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 10 KILQYNAKYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp HHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44556667999999999999999999988876
No 100
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=77.56 E-value=2.5 Score=33.81 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.2
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.-.+|++.++|+.+|||.+++.++.+-
T Consensus 72 ~L~~~R~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 456688889999999999999999999999764
No 101
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=76.63 E-value=1.7 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=23.1
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
++...++++.++|+.+||+.+++-++.+
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6667788999999999998888887765
No 102
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=76.57 E-value=2.7 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=28.4
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc---CCCC
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN---GLDR 67 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l---GI~R 67 (282)
..|+..-.++..|.|+.||||.+++.++.++| |+-+
T Consensus 11 ~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 11 EILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 34444456899999999999999999988876 6543
No 103
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=76.48 E-value=2.3 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.9
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++...+|++.++|+.+||+.+++-++.+
T Consensus 44 ~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 44 ALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45667778899999999999999999999875
No 104
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=76.41 E-value=2.7 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.5
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++.++.... .+.+||++|||+.+.+-+.+|.
T Consensus 5 ~~L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 5 ITLKDYAMRF--GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp EEHHHHHHHH--CHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHHh
Confidence 5677776666 9999999999999999999874
No 105
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=76.36 E-value=2.3 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=28.5
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
-.+..++.--++++.++|+.+||+.++|.++.+
T Consensus 31 ~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 31 AALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 346677888899999999999999999998864
No 106
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=76.17 E-value=2.6 Score=31.76 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=27.3
Q ss_pred CHHHHHh--hcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISK--YFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~--yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++. ..+|.+.+.|+.+||+.+++.++.+
T Consensus 38 ~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 38 AIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566778 8899999999999999999988754
No 107
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=76.13 E-value=2.3 Score=36.48 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.4
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+.+|+.-.+|+++++|+.||||.+++-++.+
T Consensus 94 ~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 94 MFGDWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 68889999999999999999999999988765
No 108
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=76.03 E-value=2.6 Score=32.92 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+-+++..|+|+.||||..+++++.++.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 348999999999999999999877653
No 109
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=75.86 E-value=2.9 Score=32.70 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.2
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc---CCCC
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN---GLDR 67 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l---GI~R 67 (282)
..|+..-.+|..|.|+.||+|.+++.++.++| |+-+
T Consensus 16 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 16 KILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44555567999999999999999999988875 7644
No 110
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=75.71 E-value=1.6 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.2
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+-+++.+|+|+.|||+..++|.+..+
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44899999999999999999876554
No 111
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=75.59 E-value=4.4 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=28.0
Q ss_pred HHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCCC
Q 023462 34 ISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 34 L~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI~ 66 (282)
+...-++.+.|.++.| +||.+|+.|...++|+.
T Consensus 14 l~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 14 ITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 3445578999999999 99999999999998853
No 112
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=75.18 E-value=2.2 Score=33.15 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++.++|+.||||.+++.+..+++
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999888764
No 113
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=75.09 E-value=2.6 Score=33.98 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=29.4
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.-.+|.++++|+.+||+.++|.++.+-
T Consensus 14 ~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 14 LLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 466788888999999999999999999998874
No 114
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=74.61 E-value=3 Score=32.08 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
+..+|.--+|++++.|+.+||+.+++.++ +.|
T Consensus 41 ir~~R~~~glTQ~eLA~~~gvs~~~is~~--E~G 72 (101)
T 4ghj_A 41 LKQARLNRDLTQSEVAEIAGIARKTVLNA--EKG 72 (101)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHH--HTT
T ss_pred HHHHHHHcCCCHHHHHHHcCCCHHHHHHH--HCC
Confidence 45667788999999999999999999987 456
No 115
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=74.55 E-value=1.9 Score=31.43 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=21.6
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++.+|+|+.||||..+++...++
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r 67 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 55899999999999999887765443
No 116
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.26 E-value=3.3 Score=32.48 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..|+..=.+|..|.|+.||+|.+++.++.++|
T Consensus 15 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 15 EALMGNARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp HHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555557899999999999999999988876
No 117
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=74.05 E-value=2.3 Score=34.93 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.|++.|+|+.+||++.+|...-+. |+.. |.|
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~-Gll~-p~r 41 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESK-GLIT-SIR 41 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHT-TSSC-CEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHc-CCCC-ccc
Confidence 378999999999999999877665 7655 655
No 118
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=73.92 E-value=0.66 Score=38.18 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcch
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRK 72 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRK 72 (282)
++++.++|+.||||.+|+.|+.++.+-.++|-++
T Consensus 158 G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~~~~~~~ 191 (193)
T 3uj3_X 158 GIPRKQVALIYDVALSTLYKKHPAKRAHIENDDR 191 (193)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHhhhcCCCCCC
Confidence 5789999999999999999999988766666554
No 119
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.91 E-value=3.5 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc---CCC
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN---GLD 66 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l---GI~ 66 (282)
..|+..=.+|..|.|+.||||.+++.++.++| |+-
T Consensus 12 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 49 (144)
T 2cfx_A 12 EELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49 (144)
T ss_dssp HHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 34555557999999999999999999999887 753
No 120
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=73.25 E-value=3.9 Score=31.77 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=29.0
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.--+|++.++|+.+||+.++|.++-+-
T Consensus 11 ~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 11 TFRKKREERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 356788888999999999999999999998763
No 121
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=72.99 E-value=3.6 Score=33.09 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
-+++.+|+|+.|||+..+++++..+
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~r 226 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKAK 226 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3899999999999999999877643
No 122
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=72.85 E-value=4.3 Score=29.52 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=23.9
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHH----HHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSV----LKKIC 60 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~----LKR~C 60 (282)
+..++.-.++++.+.|+.+||+.++ +-++-
T Consensus 6 lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 6 LKDARLRAGISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 5567778899999999999999888 65543
No 123
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=72.81 E-value=3.2 Score=30.13 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCcCHHHHHhhc---CCcHHHHHHHhCCChHHHHHHHH
Q 023462 27 KSLSFDDISKYF---SLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 27 ~~iTledL~~yF---~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+...++|.... ++++.+.|+.+||+.++|.+.+.
T Consensus 7 ~~~~~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 7 RDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp SSCCHHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467777777544 89999999999999999998755
No 124
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=72.65 E-value=3 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.9
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
....++|+.|||+.++|.++.+..
T Consensus 26 ~~~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 26 LRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred CcHHHHHHHhCCCHHHHHHHHhch
Confidence 334599999999999999988764
No 125
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=71.85 E-value=1.9 Score=31.09 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.1
Q ss_pred CcHHHHHHHhCCChHHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+++.|+|+.+|||.+++-|++.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5789999999999999988775
No 126
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.70 E-value=3.7 Score=30.66 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHHHhh------cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKY------FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~y------F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++-|+.+ +-..+.|+|+.||||.+++.+-...|
T Consensus 10 L~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 10 ISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555 66679999999999998877766544
No 127
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=71.57 E-value=4.9 Score=28.64 Aligned_cols=26 Identities=12% Similarity=-0.181 Sum_probs=22.1
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.++..|+|+.|||+.+++.+....|
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35789999999999999998887755
No 128
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=71.20 E-value=4 Score=31.49 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++..|+|..||||..++|.+.++
T Consensus 39 ~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 39 DYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 599999999999999999887654
No 129
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=70.87 E-value=3 Score=32.54 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=27.6
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc---CC-CCCCcchhh
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN---GL-DRWPYRKFL 74 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l---GI-~RWPyRKlk 74 (282)
.|| ..+.|+.||||.+++.+..++| |+ .+-|.+-..
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 466 9999999999999999988877 54 344554433
No 130
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=70.65 E-value=3.5 Score=34.57 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=19.0
Q ss_pred cccccccCchhhhhhhhcCCCCCCCCcCHHHHH----------hhcCCcHHHHHHHhCCChHHHHH
Q 023462 3 SSLSLHNNSSISKAAASSSISTSTKSLSFDDIS----------KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 3 ~~~~~~~~~~~~ka~as~~~k~~~~~iTledL~----------~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
|+-.=+|..+.+.....++....+..++.+.|- .|-.+.+.++|+++||+..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 68 (241)
T 2hxi_A 3 SSHHHHHHSSGRENLYFQGHMAGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp -------------------------CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred CccccccCCCCCccccCCCCCCcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHH
Confidence 333334444444444555555666778888764 23355666666666666665554
No 131
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=70.64 E-value=3.7 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.6
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+..++.--++.++++|+.+||+.++|.++.+-
T Consensus 15 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 15 QLKNLRKSRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 466778888999999999999999999998763
No 132
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=70.46 E-value=3.3 Score=33.63 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=26.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPY 70 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPy 70 (282)
..|.-.+.|||+.|||+.+++.++|.. + .||-
T Consensus 80 G~~f~S~~eAar~lg~s~~ti~~~~~~-~--k~~~ 111 (116)
T 1i3j_A 80 GVIFDCAADAARHFKISSGLVTYRVKS-D--KWNW 111 (116)
T ss_dssp TEEESSHHHHHHHHTCCHHHHHHHHHC-T--TCCE
T ss_pred CEEEcCHHHHHHHHCCCchhHHHHHhc-C--CCCC
Confidence 345778999999999999999999965 3 4663
No 133
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=70.24 E-value=3.3 Score=33.52 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=28.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKF 73 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKl 73 (282)
++++.++|+.+|||.+|+.|+.|.+.-.-=.||.+
T Consensus 58 G~SyreIa~~tG~StaTIsRv~r~L~~g~~gy~~v 92 (107)
T 3frw_A 58 KRTYLDISEKTGASTATISRVNRSLNYGNDGYEMV 92 (107)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHHSCSHHHHH
T ss_pred CCCHHHHHHHHCccHHHHHHHHHHHHccChHHHHH
Confidence 79999999999999999999999876443445544
No 134
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=70.01 E-value=4.7 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..|+..=.++..|.|+.||+|.+++.++.++|
T Consensus 14 ~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 14 RELAADGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444456899999999999999999988866
No 135
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=69.97 E-value=4.1 Score=33.13 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~R 67 (282)
.+++.|+|+.+||++.+|....+. |+..
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~~-GLl~ 31 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKI-NLLK 31 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHT-TSSC
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCCC
Confidence 478999999999999999888777 7643
No 136
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=69.90 E-value=5.6 Score=28.09 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 33 DISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.|...=.+++.++|+.|||+.+++-+.+++|
T Consensus 28 ~l~~~~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 28 LLLERGGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp HHHHHCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334456889999999999999999999876
No 137
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=69.73 E-value=5.7 Score=32.12 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.|+|.|+|+.+||++.||...-+. |+..=|.|
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r 33 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI-GLIPPIHR 33 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH-TSSCCCCB
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCCCCCcC
Confidence 478999999999999999988777 76543444
No 138
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=69.65 E-value=2.2 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++++.++|+.||||.+|+.+..+++
T Consensus 41 G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 41 GVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp TCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999999886
No 139
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.61 E-value=4.6 Score=28.57 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.++..|.|+.|||+.+++-|+...|
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999999988776
No 140
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=69.51 E-value=3.5 Score=31.73 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=28.6
Q ss_pred HHHHHhhc----CCcHHHHHHHhCCChHHHHHHHHHc-CCC
Q 023462 31 FDDISKYF----SLPLSDAANHLGVCVSVLKKICRDN-GLD 66 (282)
Q Consensus 31 ledL~~yF----~lPi~EAAr~LGVs~T~LKR~CR~l-GI~ 66 (282)
++.+..|. .+++.++|..+|+|.+.|-|++++. |+.
T Consensus 81 l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 81 ITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 33444554 4899999999999999999999765 774
No 141
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=69.33 E-value=3.5 Score=32.28 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=27.6
Q ss_pred CcCHHHHHhh---cCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 28 SLSFDDISKY---FSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 28 ~iTledL~~y---F~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
.+.++.+..+ -+..+.++|+.||+|..++++..+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~~~~ 183 (184)
T 3rqi_A 142 RLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAKKPVR 183 (184)
T ss_dssp -CHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhcCCC
Confidence 3445555433 37889999999999999999999988874
No 142
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=69.16 E-value=3.5 Score=33.88 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcchh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYRKF 73 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRKl 73 (282)
+++..|+|+++|||.+|+-|..|.+.-.-=-||.+
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r~L~~g~~gy~~~ 109 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKRSLQWGNDAYTMI 109 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHSSCSHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhcCChHHHHH
Confidence 69999999999999999999999876543345444
No 143
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=67.63 E-value=3.5 Score=33.09 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=35.5
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKYA 86 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~a 86 (282)
+.+++++.|..||++..+|-|+.+++ ||-+.-++++--....+.|++++
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~~~L~~~~ 213 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLVRLKAAA 213 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSHHHHHHTC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEEcCHHHHHHHH
Confidence 46889999999999988887776655 88778888854333455555543
No 144
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=66.83 E-value=3.6 Score=34.25 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
++++.++|+.|||+.+++.|+.+..+..
T Consensus 175 G~s~~~Ia~~l~is~~tv~r~l~~~~~~ 202 (209)
T 2r0q_C 175 GQAISKIAKEVNITRQTVYRIKHDNGLS 202 (209)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCC--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhccccc
Confidence 6899999999999999999999877653
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.70 E-value=3.1 Score=35.30 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=24.2
Q ss_pred hhcCCc---HHHHHHHhCCChHHHHHHHHHcCC
Q 023462 36 KYFSLP---LSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 36 ~yF~lP---i~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
..|+-. +.+||+.|||+.++|.+..++++|
T Consensus 258 ~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 258 LRFGGGPVGLATLATALSEDPGTLEEVHEPYLI 290 (324)
T ss_dssp HHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHH
Confidence 444444 899999999999999998887665
No 146
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=66.64 E-value=5 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=22.2
Q ss_pred cCCcHHHHHHHhCCChHHHHH----HHHHcCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKK----ICRDNGL 65 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR----~CR~lGI 65 (282)
-+++.+|+|+.||||..+++. +++++|+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 389999999999999887654 5555665
No 147
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=66.22 E-value=8.3 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCcHHHHHHHhC--CChHHHHHHHHHcCC
Q 023462 39 SLPLSDAANHLG--VCVSVLKKICRDNGL 65 (282)
Q Consensus 39 ~lPi~EAAr~LG--Vs~T~LKR~CR~lGI 65 (282)
.+...++|..|| ||.+++.++.+++|+
T Consensus 77 ~~s~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 478899999999 899999999999998
No 148
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=66.15 E-value=5.9 Score=31.04 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+.++|.--+|++.|.|+.+||+.+++.++=+
T Consensus 8 lr~~R~~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 8 LKGRRERLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 5677888899999999999999999999854
No 149
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.06 E-value=5 Score=30.66 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.5
Q ss_pred hcCCcHHHHHHHhCCChHHHH----HHHHHcCCC
Q 023462 37 YFSLPLSDAANHLGVCVSVLK----KICRDNGLD 66 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LK----R~CR~lGI~ 66 (282)
+-+++.+|+|+.||||..+++ ++++++|+.
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 348999999999999988755 555666763
No 150
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=65.56 E-value=2 Score=26.37 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.6
Q ss_pred ccccccCCCCCCccc
Q 023462 153 LDEFKHGFPSDGLST 167 (282)
Q Consensus 153 ~DeFK~GFPS~GLst 167 (282)
--||+.|||.+|+..
T Consensus 7 pPef~pg~pwkG~~~ 21 (22)
T 3ktp_B 7 PPEFHPGVPWKGLQN 21 (26)
T ss_pred CcccccCCccccccc
Confidence 458999999999863
No 151
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=65.25 E-value=4.1 Score=28.89 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=23.7
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.+++.|.|+.|||+.+++-|..++|
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35889999999999999999999887
No 152
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=64.78 E-value=5.6 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHH----HcCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICR----DNGL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR----~lGI 65 (282)
+-.+..||++|||+.++|-|.-+ ++|+
T Consensus 15 ~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 15 AGNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp HSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 46889999999999998866665 5675
No 153
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=64.13 E-value=9 Score=33.54 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=24.4
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
|.|.|+|+.+||+..+|+...++ |+..=|.|
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~-GLl~p~~R 31 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLRE-GLLPPGRQ 31 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH-TSSCCC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CCCCCCee
Confidence 67999999999999999998887 75443443
No 154
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=64.02 E-value=1.4 Score=34.49 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.7
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++.+|+|+.||||..++|.+..+
T Consensus 149 ~~g~s~~eIA~~lgis~~tV~~~l~r 174 (184)
T 2q1z_A 149 FGDLTHRELAAETGLPLGTIKSRIRL 174 (184)
T ss_dssp HSCCSSCCSTTTCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45899999999999999998876654
No 155
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=63.96 E-value=4.4 Score=34.32 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
-|++.|+|+.|||+.+++.++-|+.-|
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G~L 57 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGHL 57 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCCCc
Confidence 478999999999999999999997765
No 156
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=63.70 E-value=5.5 Score=33.67 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+++.++|+.||||.+||.+..++
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc
Confidence 589999999999999999887664
No 157
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=63.43 E-value=20 Score=27.17 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCCCCcCHHHHHhhc-----C-CcHHHHHHHhCCChHHHHHHHHHcC--CCCCCcchhhh
Q 023462 24 TSTKSLSFDDISKYF-----S-LPLSDAANHLGVCVSVLKKICRDNG--LDRWPYRKFLS 75 (282)
Q Consensus 24 ~~~~~iTledL~~yF-----~-lPi~EAAr~LGVs~T~LKR~CR~lG--I~RWPyRKlkS 75 (282)
.....-|-++|..-. + |.+..||+..||..+||-.+.+... +.+=|.|+|+-
T Consensus 9 ~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~~ 68 (70)
T 2cob_A 9 GRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKL 68 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCCC
T ss_pred ccccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccCC
Confidence 444445666665322 4 9999999999999999997776664 57888888763
No 158
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=63.19 E-value=6 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=23.5
Q ss_pred CcCHHHHHhhc--CCcHHHHHHHhCCChHHHHHH
Q 023462 28 SLSFDDISKYF--SLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 28 ~iTledL~~yF--~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.+..+-..-|| ++++.|+|++||||.+++-|.
T Consensus 21 ~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~Vsrl 54 (101)
T 2w7n_A 21 QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 34445555666 899999999999997765543
No 159
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.95 E-value=4.1 Score=35.82 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=21.4
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.++-.+.+||+.||||.+||.|..+
T Consensus 279 ~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 279 KTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp TTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4567899999999999999988754
No 160
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.65 E-value=6 Score=31.26 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=28.7
Q ss_pred HHHHHhhcCCcHHHHHHHh--CCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHL--GVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~L--GVs~T~LKR~CR~l 63 (282)
++.|+..=-++..+.|+.| |||.+++.++|++|
T Consensus 19 L~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~L 53 (111)
T 3b73_A 19 LEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKL 53 (111)
T ss_dssp HHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5566666689999999999 99999999999976
No 161
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=62.02 E-value=4.4 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=23.2
Q ss_pred cHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 41 PLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
.+.+.|++|||+.-.|-..+.+.||
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 4678999999999999999999999
No 162
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=60.83 E-value=9.6 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
|++.|+|+.+||++.+|...-+ .|+..=|.|
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~-~Gll~p~~r 31 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE-KGLVTPPMR 31 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH-TTCSCCCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHH-CCCCCCCcc
Confidence 5789999999999999988766 465443433
No 163
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=60.56 E-value=6.7 Score=34.06 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=22.9
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.-+|++.|+|+.||||.+++-|.-+.-
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 358999999999999999998876553
No 164
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=60.29 E-value=8.2 Score=33.96 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.|+|.|+|+.+|||+.||...-+ .|+.. |.|
T Consensus 3 ~~tI~evA~~~gvs~~TLRyYe~-~GLL~-p~~ 33 (249)
T 3qao_A 3 AMQIKELAELTGVSVRTLHHYDK-IGLLV-PQK 33 (249)
T ss_dssp CBCHHHHHHHHCCCHHHHHHHHH-TTSSC-CEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH-CCCCC-Cce
Confidence 47899999999999999987776 78754 555
No 165
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=59.89 E-value=7.7 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.|+|+.|||+.+++-+..++|
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5789999999999999999888765
No 166
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=59.26 E-value=9.7 Score=29.33 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+++.++|+.+|||.+|+-|....
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 489999999999999999998753
No 167
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.25 E-value=11 Score=28.90 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHhhc---CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 32 DDISKYF---SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 32 edL~~yF---~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..|...| .++..+.|+.+||+.+++.++.+.|
T Consensus 16 ~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L 50 (129)
T 2y75_A 16 IELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPL 50 (129)
T ss_dssp HHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444544 4789999999999999999988866
No 168
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=59.06 E-value=2 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=0.0
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++.+|+|+.||||..+++++.++
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp --------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34899999999999999999876544
No 169
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=59.04 E-value=7.4 Score=30.70 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKY 85 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~ 85 (282)
+.+|+++.|..|||+..+|-|+-+++ ||-+.-+++|.-+ ..+.|+++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~-d~~~L~~~ 217 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITIL-DSKRLETL 217 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES-CHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe-CHHHHHHH
Confidence 47899999999999999888877655 8777666666533 24444443
No 170
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=58.09 E-value=8.7 Score=27.10 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=24.5
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|...=.+++.|+|+.|||+.+++-+..+++
T Consensus 25 L~~~~~~~~~ela~~l~is~~tvs~~l~~L 54 (100)
T 1ub9_A 25 LLPRRKAPFSQIQKVLDLTPGNLDSHIRVL 54 (100)
T ss_dssp HHHHSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 333336889999999999999999888876
No 171
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=57.93 E-value=8.4 Score=27.97 Aligned_cols=25 Identities=8% Similarity=-0.047 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+...|.|+.|||+.+++.+..+.|
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999999988765
No 172
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=57.92 E-value=10 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
..++... .+.++|+.+||+.++|.++.+
T Consensus 22 ~~~R~~~--sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 22 RSARGDM--SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHTTS--CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHC--CHHHHHHHhCCCHHHHHHHHc
Confidence 3344443 889999999999999998876
No 173
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=57.88 E-value=12 Score=30.49 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=26.6
Q ss_pred cCHHHHHhhc----CCcHHHHHHHhCCChHHHHHHHH----HcCC
Q 023462 29 LSFDDISKYF----SLPLSDAANHLGVCVSVLKKICR----DNGL 65 (282)
Q Consensus 29 iTledL~~yF----~lPi~EAAr~LGVs~T~LKR~CR----~lGI 65 (282)
+++++|+-+. +-.+..||++||||.++|-|.-+ ++|+
T Consensus 3 ~~l~~l~~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 3 TNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp CCHHHHHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 4555554222 67899999999999988766665 5586
No 174
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=57.74 E-value=9.4 Score=32.54 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.6
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+-+++.+|+|+.||||..++|.+-++
T Consensus 210 ~~G~s~~EIA~~L~iS~~TVk~~l~r 235 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNRHRQN 235 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56999999999999999998876654
No 175
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=57.52 E-value=8.6 Score=31.45 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=35.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKYA 86 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~a 86 (282)
+.+++++.|..|||+..+|-|+.+++ ||-+.-++++.-+ ..+.|++++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~-d~~~L~~~a 226 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVY-NLGELKHLS 226 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES-CHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe-cHHHHHHHH
Confidence 46799999999999999988887665 8877777776644 345555443
No 176
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.05 E-value=2.2 Score=33.97 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCC
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGL 65 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI 65 (282)
.+..++..-++++.++|+.||||.+++-|+ +.|.
T Consensus 5 ~lk~~R~~~gltq~elA~~lgis~~~vs~~--e~G~ 38 (158)
T 2p5t_A 5 NIKSLRKTHDLTQLEFARIVGISRNSLSRY--ENGT 38 (158)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCC
Confidence 356677788999999999999999999888 4454
No 177
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=56.71 E-value=20 Score=23.90 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=34.1
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHhC----CChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHLG----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~LG----Vs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++...+.+-+. ++..+|.++|+.+|+.
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~ 65 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVD 65 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 3568899999999999988888653 6788899999999984
No 178
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=56.63 E-value=7.5 Score=32.08 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+.+++...++++.+.|+.+||+.+++.++.+.
T Consensus 22 l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 22 YEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45666677899999999999999999887653
No 179
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=56.07 E-value=14 Score=27.28 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.6
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|...=.+++.|+|+.|||+.+++-+..+++
T Consensus 38 l~~~~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 38 IHREPGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHSTTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334456889999999999999988888766
No 180
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=55.94 E-value=6.8 Score=32.49 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC-CCCCcchhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL-DRWPYRKFL 74 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI-~RWPyRKlk 74 (282)
-||..+.|+.||||.|++....++| |+ ..=|+|-..
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~ 78 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAV 78 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEE
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeE
Confidence 6889999999999999999988877 54 345776544
No 181
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=55.56 E-value=8.4 Score=29.46 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=36.8
Q ss_pred ccCchhhhhhhhcCCCCCCCCcCHHHH--H----hhc----CC-cHHHHHHHhCCChHHHHHHHHHc
Q 023462 8 HNNSSISKAAASSSISTSTKSLSFDDI--S----KYF----SL-PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 8 ~~~~~~~ka~as~~~k~~~~~iTledL--~----~yF----~l-Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|.-..|+++........ +.+++| + ..| .+ +..+.|+.||||.+++.+..++|
T Consensus 5 ~~~~~~~~~~~~~~~~~----~~y~~l~i~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 5 HHHHHMSKAVVQMAISS----LSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CCCTHHHHHHHHHHHHT----SCHHHHHHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCccccccccchhH----HHHHHHHHHHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44456777777665433 466666 3 222 24 79999999999999999988876
No 182
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=55.36 E-value=8.3 Score=34.41 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=27.3
Q ss_pred cHHHHHHHhCCChHHHHHHHHHcCCCCCC
Q 023462 41 PLSDAANHLGVCVSVLKKICRDNGLDRWP 69 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~lGI~RWP 69 (282)
++.|+|+..||+..++.++.|.+|+++-+
T Consensus 80 T~~eVAe~aGv~~e~~rr~wRalGfp~~~ 108 (222)
T 2ev1_A 80 SAREISENYGVDLELLQRVQRAVGLARVD 108 (222)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHCCCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999998764
No 183
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=54.97 E-value=14 Score=28.09 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=28.3
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCcchhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPYRKFL 74 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPyRKlk 74 (282)
=.+++.++|+.|||+.+++-+..++| | |.|=|++.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~ 61 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLV 61 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEE
Confidence 36899999999999999998888866 5 3455654443
No 184
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=54.53 E-value=8.2 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.++..+.|+.||||.+++.+..+.|
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L 57 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLL 57 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4899999999999999999988866
No 185
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=54.46 E-value=14 Score=27.40 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.+.+.++|+.|||+.+++-+..++| |+
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~~Gl 74 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRNLGL 74 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 5899999999999999998888776 75
No 186
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=54.42 E-value=15 Score=27.25 Aligned_cols=29 Identities=3% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
|...=.+.+.|.|+.|+||..|+.|--.+
T Consensus 11 L~~~g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 11 LALRGRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp HHHSCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 33444689999999999999998876544
No 187
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=54.22 E-value=9.1 Score=29.18 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=21.2
Q ss_pred cHHHHHHHhCCChHHHHHHHHHc
Q 023462 41 PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..+.|+.||||.+++.+..++|
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 58899999999999999998877
No 188
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=54.14 E-value=6.7 Score=27.67 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=23.8
Q ss_pred CcHHHHHHHh--CCChHHHHHHHHHcCC
Q 023462 40 LPLSDAANHL--GVCVSVLKKICRDNGL 65 (282)
Q Consensus 40 lPi~EAAr~L--GVs~T~LKR~CR~lGI 65 (282)
+++.|.|+.| .+|..||.|.+|+-.|
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6889999999 7899999999999887
No 189
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=53.95 E-value=9 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l 63 (282)
-|| ..+.|+.||||.+++.+..++|
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 464 7899999999999999998877
No 190
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=53.61 E-value=7.5 Score=29.80 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=23.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..++..|.|++|||+.+++.++-++|
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45999999999999999998887766
No 191
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=53.56 E-value=30 Score=22.21 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=33.3
Q ss_pred CCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 27 KSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 27 ~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
..+|..+|....+++...+.+-+ .++..++.++|+.+|+.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 46788999999999988888765 36788899999999974
No 192
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=53.47 E-value=12 Score=28.93 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=22.3
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+++.|+|+.|||+.+++.|...+|
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L 66 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKL 66 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 889999999999999999998865
No 193
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=53.37 E-value=27 Score=23.18 Aligned_cols=40 Identities=5% Similarity=-0.070 Sum_probs=32.6
Q ss_pred CCcCHHHHHhhcCCcHHHHHHHhC----CChHHHHHHHHHcCCC
Q 023462 27 KSLSFDDISKYFSLPLSDAANHLG----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 27 ~~iTledL~~yF~lPi~EAAr~LG----Vs~T~LKR~CR~lGI~ 66 (282)
..+|..+|....+++...+.+-.. ++..+|.++|+.+|+.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~ 60 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCS 60 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 457889999999999888887653 5788899999999874
No 194
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=52.49 E-value=29 Score=22.40 Aligned_cols=40 Identities=5% Similarity=-0.070 Sum_probs=32.6
Q ss_pred CCcCHHHHHhhcCCcHHHHHHHhC----CChHHHHHHHHHcCCC
Q 023462 27 KSLSFDDISKYFSLPLSDAANHLG----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 27 ~~iTledL~~yF~lPi~EAAr~LG----Vs~T~LKR~CR~lGI~ 66 (282)
..+|..+|....+++...+.+-.. ++..+|.++|+.+|+.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 60 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCS 60 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 457889999999999888887653 5778899999999874
No 195
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=52.01 E-value=10 Score=32.44 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=16.3
Q ss_pred cHHHHHHHhCCChHHHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++|+|++.|||.+|+-|.-..
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5777888888888877776663
No 196
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=51.97 E-value=18 Score=26.74 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=25.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
.+++.++|+.|||+.+++-+..+++ | |.|-|
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 5899999999999999888887766 4 44544
No 197
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=51.92 E-value=31 Score=22.79 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=34.7
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++...+.+-. .++..+|.++|+.+|+.
T Consensus 22 r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~ 68 (74)
T 1y7y_A 22 RTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIE 68 (74)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 34456899999999999988888765 36788899999999984
No 198
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=51.88 E-value=10 Score=31.48 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc---CC-CCCCcc
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN---GL-DRWPYR 71 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l---GI-~RWPyR 71 (282)
-|| ..+.|++||||.|++....++| |+ .+-|.|
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~ 67 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 575 8999999999999999988876 53 444554
No 199
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=51.77 E-value=17 Score=30.86 Aligned_cols=36 Identities=6% Similarity=-0.011 Sum_probs=32.3
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
++.|.+.=.+...|.|+.||||..|+.|=..+|+|+
T Consensus 18 ~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~ 53 (190)
T 4a0z_A 18 RQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIP 53 (190)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCc
Confidence 566777778999999999999999999999999996
No 200
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=51.68 E-value=12 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=25.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.++|.|+|+.+||++.+|...-+ .|+..=|.|
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~-~Gll~p~~r 47 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDK-QGLFPFLQR 47 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH-TTCCTTCEE
T ss_pred ceeHHHHHHHHCcCHHHHHHHHH-CCCCCCCcC
Confidence 48899999999999999987765 465444555
No 201
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=51.49 E-value=11 Score=33.57 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
+.++..+.++++.++|+.+|||.++|-++.+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 6677788999999999999999999999986
No 202
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=51.45 E-value=17 Score=27.24 Aligned_cols=43 Identities=5% Similarity=0.080 Sum_probs=30.9
Q ss_pred CCcCHHHHH------hhcCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 27 KSLSFDDIS------KYFSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 27 ~~iTledL~------~yF~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
..|+..++. ..=.+++.++|+.|||+.+++-+.++++ | |.|-|
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 356666654 2236889999999999999999988877 5 34544
No 203
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=51.32 E-value=28 Score=24.46 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++...+.+-+ .++..+|.++|+.+|+.
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~ 74 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLK 74 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCC
Confidence 34557899999999999999999876 26778999999999983
No 204
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.32 E-value=18 Score=26.53 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=28.1
Q ss_pred CcCHHHHH------hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 28 SLSFDDIS------KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 28 ~iTledL~------~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.|+..++. ..=.+++.++|+.|||+.+++-+.++++
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56655544 2236789999999999999999988877
No 205
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=51.18 E-value=32 Score=22.94 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
....+|..+|....+++...+.+-. .++..+|.++|+.+|+.
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~ 65 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIP 65 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 3456899999999999988888865 46788999999999984
No 206
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=51.17 E-value=9.6 Score=29.83 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=25.7
Q ss_pred cHHHHHHHhCCChHHHHHHHHHc---C-CCCCCcchh
Q 023462 41 PLSDAANHLGVCVSVLKKICRDN---G-LDRWPYRKF 73 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPyRKl 73 (282)
+..+.|+.||||.+++.+..++| | |.+-|.|-.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~ 73 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGT 73 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeE
Confidence 68999999999999999988876 5 344555543
No 207
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=51.13 E-value=9 Score=32.51 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=9.8
Q ss_pred cHHHHHHHhCCChHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~C 60 (282)
+++|+|++.|||.+|+-|.-
T Consensus 4 ti~dvA~~agVS~~TVSrvl 23 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVV 23 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 34555555555555544433
No 208
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.08 E-value=12 Score=28.32 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+..++|
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHH
Confidence 4689999999999999998888766
No 209
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.82 E-value=18 Score=26.82 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=23.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.++|+.|||+.+++-++.+++
T Consensus 44 ~~~~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 44 FEGPKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 3336789999999999999999888877
No 210
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=50.44 E-value=11 Score=30.97 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred CcHHHHHHHhCCChHHHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
-.+.|||+.+||+.+++-++|+.
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~g 158 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKG 158 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHhHhHHHHcC
Confidence 37999999999999999999985
No 211
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=50.19 E-value=15 Score=28.43 Aligned_cols=33 Identities=3% Similarity=-0.066 Sum_probs=27.7
Q ss_pred HHHHHhhc--CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYF--SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+.-+..++ .+++.|||+..||+.+.|.+-++.+
T Consensus 39 l~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 39 AAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 44455555 7899999999999999999999876
No 212
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=50.15 E-value=19 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=26.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
..=.+++.++|+.|||+.+++-+..+++ | |.|-|
T Consensus 42 ~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 42 KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3336789999999999999988888766 4 44544
No 213
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.09 E-value=18 Score=27.97 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=28.2
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCcchhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPYRKFL 74 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPyRKlk 74 (282)
=.+.+.++|+.|||+.+++-+..++| | |.|-|.+.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~ 93 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVF 93 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecCCceE
Confidence 46889999999999999998888766 5 3455555443
No 214
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=49.79 E-value=19 Score=28.63 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHhhcCC-cHHHHHHHhCCChHHHHHHHHH
Q 023462 34 ISKYFSL-PLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 34 L~~yF~l-Pi~EAAr~LGVs~T~LKR~CR~ 62 (282)
|+..... .+.+.|+.+||+.+++.+..+.
T Consensus 14 l~~~r~~~tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 14 ICEAYGFSQKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp HHHHHTCSSHHHHHHHTTCCHHHHHHHHHS
T ss_pred HHHHHhhcCHHHHHHHhCcCHHHHHHHHhC
Confidence 3433333 9999999999999999998873
No 215
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.46 E-value=11 Score=29.32 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=10.9
Q ss_pred cCCcHHHHHHHhCCChHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LK 57 (282)
-.+.+.++|++.|||..+|-
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y 68 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFY 68 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHH
T ss_pred CcCcHHHHHHHhCCCcchhh
Confidence 34555555555555555553
No 216
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.29 E-value=19 Score=25.29 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=22.8
Q ss_pred cCCcHHHHHHHh-----CCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHL-----GVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~L-----GVs~T~LKR~CR~l 63 (282)
-++++.|+++.| +|+.+|+.|....|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 478999999999 99999999887754
No 217
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=49.09 E-value=20 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.9
Q ss_pred cCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 29 LSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
.-+.+|.. ++.+.+.|++.||+.++|-.+-+---.+.=|||
T Consensus 24 ~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~~k 64 (83)
T 2l1p_A 24 NALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAA 64 (83)
T ss_dssp HHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCCSH
T ss_pred HHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCchHH
Confidence 34566777 999999999999999999887765444444443
No 218
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=48.99 E-value=7.4 Score=28.75 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=21.2
Q ss_pred cHHHHHHHhCCChHHHHHHHHHc
Q 023462 41 PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..+.|+.||||.+++.+..+.|
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 69999999999999999998876
No 219
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=48.96 E-value=16 Score=29.54 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-...+.++|++.||+..+|.+.+
T Consensus 35 G~~~~t~~~IA~~aGvs~~tlY~~F 59 (251)
T 3npi_A 35 GFSDAKLEAIAKKSGMSKRMIHYHF 59 (251)
T ss_dssp HHHHCCHHHHHHHHCCCHHHHHHHH
T ss_pred CccccCHHHHHHHHCCCHHHHHHHc
Confidence 5668999999999999999887654
No 220
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.89 E-value=20 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=26.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
..=.+++.++|+.|||+.+++-+++++| | |.|-|
T Consensus 60 ~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 60 LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 3346889999999999999998888876 5 45544
No 221
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=48.69 E-value=24 Score=24.31 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=34.6
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++..-+.+-. .++..+|.++|+.+|+.
T Consensus 21 r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 67 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELS 67 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCE
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 34456899999999999988888765 37788899999999973
No 222
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=48.68 E-value=12 Score=30.36 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=26.0
Q ss_pred CcCHHHHHhhc----CCcHHHHHHHhCCChHHHHHHHH----HcCCC
Q 023462 28 SLSFDDISKYF----SLPLSDAANHLGVCVSVLKKICR----DNGLD 66 (282)
Q Consensus 28 ~iTledL~~yF----~lPi~EAAr~LGVs~T~LKR~CR----~lGI~ 66 (282)
.+++.+|+-+. +-.+..||++|||+.++|-|.-+ ++|++
T Consensus 3 ~~~l~~l~~f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~ 49 (306)
T 3fzv_A 3 SYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQ 49 (306)
T ss_dssp -CCHHHHHHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CC
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCCe
Confidence 35666665332 67899999999999887766655 56863
No 223
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=48.65 E-value=20 Score=26.77 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=23.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.++|+.|||+.+++-+..+++
T Consensus 53 ~~~~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 53 EEGDLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 3336789999999999999998888876
No 224
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.62 E-value=19 Score=26.58 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=23.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.++|+.|||+.+++-+..++|
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 3346789999999999999998888866
No 225
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.42 E-value=21 Score=26.58 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=23.1
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.=.+++.++|+.|||+.+++-+..+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 346789999999999999988888766
No 226
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=48.34 E-value=3.7 Score=33.80 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
++++.++|+.||||.+|+.|+.++..
T Consensus 158 G~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 158 GIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp --------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 57889999999999999988876543
No 227
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=48.31 E-value=16 Score=29.12 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=21.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHH----HcCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICR----DNGL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR----~lGI 65 (282)
+..+..||++|||+.++|-+.-+ ++|+
T Consensus 15 ~~s~t~AA~~L~isq~avS~~i~~LE~~lg~ 45 (291)
T 3szp_A 15 NGSYTSTSKKTMIPVATITRRIQALEDSLNL 45 (291)
T ss_dssp HSSHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 56789999999999988766555 5686
No 228
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=48.15 E-value=13 Score=29.33 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=22.4
Q ss_pred CC-cHHHHHHHhCCChHHHHHHHHHcC
Q 023462 39 SL-PLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 39 ~l-Pi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
-| +..+.|+.||||.|++.+..++|-
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35 588999999999999999988773
No 229
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.98 E-value=19 Score=29.64 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=21.3
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+-.++.|.|+.||++.+++.++.++|
T Consensus 23 ~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 23 YPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 35788999999999988888776655
No 230
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.16 E-value=26 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=35.2
Q ss_pred CCCCcCHHHHHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI~ 66 (282)
....+|..+|....+++..-+++-. .++..+|.++|+-|||.
T Consensus 20 ~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~ 66 (78)
T 3qq6_A 20 KEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVS 66 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcC
Confidence 4456899999999999988888754 47788999999999984
No 231
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=47.04 E-value=10 Score=32.39 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHH---HHHHcCCC
Q 023462 27 KSLSFDDISKYFSLPLSDAANHL----GVCVSVLKK---ICRDNGLD 66 (282)
Q Consensus 27 ~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR---~CR~lGI~ 66 (282)
..+|+.||.+.+++...-+.+.| +|+..|-+| ..+++|..
T Consensus 9 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~ 55 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYV 55 (344)
T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 34566666666666666666666 455554444 46678864
No 232
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=47.02 E-value=11 Score=30.21 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=34.3
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKY 85 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~ 85 (282)
+.+++++.|..|||+..+|-|+.+++ ||-+.-+++|.-+ ..+.|+++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~-d~~~L~~~ 223 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLL-DLAALEAL 223 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEES-CHHHHHHC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEe-CHHHHHHH
Confidence 45789999999999999888887655 8777777776543 24444443
No 233
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.90 E-value=18 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCcHHHHHHHhCCChHH-HHHHHHHc---CCCC
Q 023462 39 SLPLSDAANHLGVCVSV-LKKICRDN---GLDR 67 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~-LKR~CR~l---GI~R 67 (282)
.+++.|.|+.|||+.++ +-++.+++ |+-.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 68999999999999999 76666655 6444
No 234
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=46.82 E-value=9.8 Score=32.85 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=11.3
Q ss_pred cHHHHHHHhCCChHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~C 60 (282)
+++|+|+++|||.+|+-|.-
T Consensus 11 Ti~diA~~aGVS~~TVSrvL 30 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAY 30 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35556666666666555443
No 235
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=46.71 E-value=32 Score=25.48 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh---CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL---GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L---GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++...+.+-. .++..+|.++|+-||+.
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~ 78 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCD 78 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcC
Confidence 34567899999999999988888754 37899999999999984
No 236
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=46.38 E-value=21 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=23.3
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.=.+++.|.|+.|||+.+++.+..++|
T Consensus 32 ~~~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346889999999999999999988775
No 237
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=46.08 E-value=13 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCcchhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPYRKFL 74 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPyRKlk 74 (282)
.++..+.|+.||||.|++.+-.++| | |.+=|++-..
T Consensus 49 ~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~~ 88 (237)
T 3c7j_A 49 ALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAV 88 (237)
T ss_dssp BCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred eeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 5789999999999999999988876 5 3556666543
No 238
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=45.98 E-value=12 Score=30.85 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=28.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC-CCCCcchhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL-DRWPYRKFL 74 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI-~RWPyRKlk 74 (282)
-|+..+.|+.||||.|++....++| |+ ..=|+|-..
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~ 74 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFF 74 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 4689999999999999999998887 64 445776544
No 239
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=45.87 E-value=36 Score=23.27 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
....+|.++|....+++...+++-. .++..+|.++|+-+||.
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~ 69 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTD 69 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 3456888999999999988888765 46788999999999884
No 240
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.73 E-value=16 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=23.2
Q ss_pred CcCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 28 SLSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 28 ~iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
.+++.+|...++++..-+-..|.-+...|++...+.|+.
T Consensus 53 g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~~ 91 (92)
T 3hug_A 53 GWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT 91 (92)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666666666666666666665666666655555543
No 241
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=45.52 E-value=21 Score=29.29 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=21.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++..|.|+.||||..++.|..+.+
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L 60 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYL 60 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999998876544
No 242
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=45.48 E-value=11 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.5
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFL 74 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlk 74 (282)
+.+|+++.|..|||+..+|-|+.+++ ||-+.-+++|.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~ 216 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREIS 216 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEE
Confidence 35789999999999999888887765 77666677665
No 243
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.41 E-value=40 Score=22.64 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=34.3
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++...+.+-. .++..+|.++|+.+||.
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~ 63 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVD 63 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 446889999999999988888865 37888999999999984
No 244
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=45.24 E-value=17 Score=27.45 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.9
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.+++.++|+.|||+.+++-+.+++|
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35789999999999999999888876
No 245
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=45.14 E-value=22 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+..+++
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHHH
Confidence 5789999999999999988887766
No 246
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=45.04 E-value=13 Score=28.34 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=13.9
Q ss_pred hcCCcHHHHHHHhCCChHHHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
|-..++.++|++.|||..+|-+.
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHHH
T ss_pred cccccHHHHHHHhCCChhhHhHh
Confidence 33566666666666666666443
No 247
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=44.97 E-value=15 Score=30.79 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=25.7
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc---CC-CC--CCc
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN---GL-DR--WPY 70 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l---GI-~R--WPy 70 (282)
-|| ..+.|+.||||.|++....++| |+ .. =|.
T Consensus 27 ~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 576 6799999999999999888876 64 44 466
No 248
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=44.84 E-value=15 Score=26.06 Aligned_cols=42 Identities=26% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGL 65 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI 65 (282)
+....+|.++|....+++...+++-. .++..+|.++|..||+
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v 67 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 67 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTB
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 34556888888888888888777654 3677888888888887
No 249
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=44.74 E-value=21 Score=27.36 Aligned_cols=30 Identities=3% Similarity=-0.004 Sum_probs=23.7
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|...=.+.+.|.|+.||||..|+.|--.++
T Consensus 11 L~~~g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 11 LALQGRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp HHHSCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 334446889999999999999998876654
No 250
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=44.70 E-value=23 Score=30.65 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=26.1
Q ss_pred hcCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 37 YFSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
-|+++..++|+.||+|.+++.++-|=+.++
T Consensus 132 ~~g~t~~~iA~~lG~s~~~V~~~l~l~~l~ 161 (230)
T 1vz0_A 132 EMGLTQEEVARRVGKARSTVANALRLLQLP 161 (230)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHGGGSC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHcCC
Confidence 468999999999999999999988877654
No 251
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=44.67 E-value=14 Score=27.68 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=24.0
Q ss_pred CcHHHHHHHh--CCChHHHHHHHHHcCC
Q 023462 40 LPLSDAANHL--GVCVSVLKKICRDNGL 65 (282)
Q Consensus 40 lPi~EAAr~L--GVs~T~LKR~CR~lGI 65 (282)
+++.|.|+.| .+|..||.|.+|+-.|
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6889999999 7899999999999888
No 252
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=44.38 E-value=47 Score=21.84 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=33.7
Q ss_pred CCCCcCHHHHHhhcC--CcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFS--LPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~--lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
....+|.++|....+ ++..-.++-. .++..+|.++|+.+||.
T Consensus 18 ~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~ 65 (71)
T 2ewt_A 18 TQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVP 65 (71)
T ss_dssp HHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 345688999999999 8888777754 47788999999999984
No 253
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=44.18 E-value=43 Score=24.52 Aligned_cols=43 Identities=2% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHhC----CChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHLG----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~LG----Vs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++..-+++-.. ++..+|.++|+-+|+.
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~ 66 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTT 66 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 455679999999999999999998763 7889999999999985
No 254
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.01 E-value=22 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.4
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
=.+++.++|+.|||+.+++-+..+++ | |.|-|
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 35789999999999999988888766 4 45544
No 255
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=43.93 E-value=47 Score=22.72 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=35.8
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++.....+-. .++..+|.++|+.+||.
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~ 66 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 66 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 44567899999999999988888765 47889999999999985
No 256
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=43.82 E-value=26 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.+++.++|+.|||+.+++-+..++|
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 36789999999999999998888876
No 257
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=43.81 E-value=38 Score=23.10 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.6
Q ss_pred CCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 27 KSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 27 ~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
..+|..+|....+++..-+.+-. .++..+|.++|+.+||.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~ 57 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVD 57 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcC
Confidence 45788888888888888887765 25677888999999873
No 258
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=43.79 E-value=45 Score=22.28 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++..-+.+-+ .++..+|.++|+.+||.
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~ 63 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGIS 63 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCC
Confidence 456889999999999988888764 36778899999999984
No 259
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=43.76 E-value=17 Score=30.65 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=28.0
Q ss_pred CCCcCHHHHHh----hcCCcHHHHHHHhCCChHHHHHH----HHHcCC
Q 023462 26 TKSLSFDDISK----YFSLPLSDAANHLGVCVSVLKKI----CRDNGL 65 (282)
Q Consensus 26 ~~~iTledL~~----yF~lPi~EAAr~LGVs~T~LKR~----CR~lGI 65 (282)
...||-.+..= .-+++.+|+|+.||||..|+|.. ++++|+
T Consensus 173 ~~~Lt~re~~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 44566555431 23899999999999998876654 555565
No 260
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.64 E-value=21 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+++++|
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHH
Confidence 5789999999999999999888876
No 261
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=43.56 E-value=22 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.+.|+.|||+.+++-+.++++
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHH
Confidence 6789999999999999999998877
No 262
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=43.55 E-value=19 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=13.4
Q ss_pred CcHHHHHHHhCCChH
Q 023462 40 LPLSDAANHLGVCVS 54 (282)
Q Consensus 40 lPi~EAAr~LGVs~T 54 (282)
|+..||...|||+.+
T Consensus 1 mt~~EA~~ILgv~~~ 15 (65)
T 2guz_B 1 MTLDESCKILNIEES 15 (65)
T ss_dssp CCHHHHHHHTTCCGG
T ss_pred CCHHHHHHHhCCCCC
Confidence 678999999999987
No 263
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=43.42 E-value=28 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=23.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+=.+++.+.|+.|||+.+++-+..+++
T Consensus 45 ~~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 45 CAACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp HHSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 3346789999999999999999888876
No 264
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=43.20 E-value=16 Score=28.71 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=32.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKK 84 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e 84 (282)
+.+|+++.|..|||+..+|-|+.+++ ||-+--+++|.-+ ..+.|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~-d~~~L~~ 210 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVR-EAALLEE 210 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES-CHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe-CHHHHHH
Confidence 56899999999999999988887665 8766555555432 2444443
No 265
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=43.19 E-value=17 Score=28.92 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHhhc--CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYF--SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++.++.+. .+++.|||+.++|+.+++.+-||.+
T Consensus 40 ~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 40 IAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455444 8999999999999999999998876
No 266
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=43.10 E-value=19 Score=30.08 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.1
Q ss_pred hcCCcHHHHHHHhCCChHHHHH----HHHHcCC
Q 023462 37 YFSLPLSDAANHLGVCVSVLKK----ICRDNGL 65 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR----~CR~lGI 65 (282)
+-+++.+|+|+.||||..|+|. +.+++|+
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3489999999999999988765 4455665
No 267
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=42.90 E-value=22 Score=26.64 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=21.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.+.|+.|||+.+++-+.+.++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 48 EQRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HTTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred hCCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3347899999999999999998888876
No 268
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=42.80 E-value=25 Score=28.55 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=20.4
Q ss_pred HHhhcCC--cHHHHHHHhCCC-hHHHHHHH
Q 023462 34 ISKYFSL--PLSDAANHLGVC-VSVLKKIC 60 (282)
Q Consensus 34 L~~yF~l--Pi~EAAr~LGVs-~T~LKR~C 60 (282)
++...++ .+.|.|+.|||+ .+++.+..
T Consensus 18 ~~~~~g~~ps~~elA~~lgiss~~tv~~~~ 47 (202)
T 1jhf_A 18 HISQTGMPPTRAEIAQRLGFRSPNAAEEHL 47 (202)
T ss_dssp HHHHHSSCCCHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHhCCCChHHHHHHH
Confidence 3344588 799999999998 88887543
No 269
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=42.78 E-value=16 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.|.|+.|||+.+++-++..+|
T Consensus 41 ~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 41 PLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5789999999999999998888866
No 270
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=42.77 E-value=24 Score=29.50 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=25.2
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHcCCCCCCcch
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDNGLDRWPYRK 72 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~lGI~RWPyRK 72 (282)
+++.+||+.|||+.+++-|..++|--..+=.|.
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 669999999999999999988876323333343
No 271
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=42.62 E-value=23 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+++++|
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5789999999999999999888876
No 272
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=42.62 E-value=19 Score=30.02 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=23.2
Q ss_pred hcCCcHHHHHHHhCCChHHHHH----HHHHcCC
Q 023462 37 YFSLPLSDAANHLGVCVSVLKK----ICRDNGL 65 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LKR----~CR~lGI 65 (282)
+-+++.+|+|+.||||..|+|. +.+++|+
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3489999999999999988764 4556666
No 273
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=42.56 E-value=26 Score=26.68 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcHHHHHHHh-CCChHHHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHL-GVCVSVLKKICRD 62 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~L-GVs~T~LKR~CR~ 62 (282)
+--.+.++++++.++++.| |...||+-..|++
T Consensus 38 myL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 38 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344678899999999999 8999999999887
No 274
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=42.51 E-value=24 Score=26.24 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCcCHHHHH-----hhcCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 27 KSLSFDDIS-----KYFSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 27 ~~iTledL~-----~yF~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
..||..++. ....+++.|.|+.|||+.+++-+..+++ | |.|-|
T Consensus 34 ~~lt~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 355655544 1223899999999999999999888876 6 46666
No 275
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=42.16 E-value=17 Score=28.36 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.4
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKF 73 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKl 73 (282)
+.+++++.|..||++..+|-|+.+++ ||-+--+++|
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 204 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTI 204 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEE
Confidence 36889999999999999998888765 6654444443
No 276
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=41.98 E-value=24 Score=26.21 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=24.1
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
|...=.+++.++|+.|||+.+++-+..+++
T Consensus 38 l~~~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 38 VCENPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHCcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 333335789999999999999988888766
No 277
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=41.40 E-value=26 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCcHHHHHHHhCCChHHH----HHHHHHcCCC
Q 023462 39 SLPLSDAANHLGVCVSVL----KKICRDNGLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~L----KR~CR~lGI~ 66 (282)
+++.+++|+.||+|..|+ +++.+++|+.
T Consensus 157 g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 157 GLMNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 578999999999998877 6778888863
No 278
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=41.40 E-value=41 Score=24.31 Aligned_cols=41 Identities=5% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++..-+.+-+ .++..++.++|+.+|+.
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~ 73 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNG 73 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcC
Confidence 456899999999999999999876 37889999999999984
No 279
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=41.17 E-value=31 Score=25.75 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=24.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+=.+++.+.|+.|||+.+++-+.+.++
T Consensus 42 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 42 TEGSRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3336899999999999999999988877
No 280
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=41.10 E-value=18 Score=28.19 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=26.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKF 73 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKl 73 (282)
+.+++.+.|..|||+..+|-|+.+++ ||-..-+++|
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i 201 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTM 201 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEE
Confidence 35899999999999999888776654 6644444444
No 281
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=40.90 E-value=50 Score=22.73 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++...+.+-+ .++..++.++|+-+|+.
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~ 67 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVS 67 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 456899999999999999888865 35778999999999985
No 282
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=40.85 E-value=25 Score=26.33 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.+.|+.|||+.+++-+.+++|
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5789999999999999998888876
No 283
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=40.80 E-value=26 Score=26.16 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=24.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.|.|+.|||+.+++-+.++++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 48 ANEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 3346789999999999999999998877
No 284
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.76 E-value=25 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.062 Sum_probs=22.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.+++.++|+.|||+.+++-++.++|
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 35789999999999999999888876
No 285
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=40.74 E-value=21 Score=28.31 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=33.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCC-cchhhhhhcHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWP-YRKFLSGKSIEDIKK 84 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWP-yRKlkSLksI~~l~e 84 (282)
+.+++.+.|..||++..+|-|+.+++ |+-... +++|.-+ ..+.|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~-d~~~L~~ 215 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLK-DLQKLKE 215 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEES-CHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEc-CHHHHHH
Confidence 46889999999999999888877665 877776 7765432 2444443
No 286
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=39.90 E-value=18 Score=26.21 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=21.9
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+++.++|+.|||+.+++-++..+|
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999888876
No 287
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=39.82 E-value=19 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.++..|.|+.|||+.+++-+..+.| |+
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~~~Gl 65 (98)
T 3jth_A 36 ELSVGELCAKLQLSQSALSQHLAWLRRDGL 65 (98)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 5779999999999999998887765 65
No 288
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=39.72 E-value=16 Score=29.05 Aligned_cols=39 Identities=10% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCCCcCHHH---HHhhc-----CCcHHHHHH----Hh--CCChHHHHHHHHH
Q 023462 24 TSTKSLSFDD---ISKYF-----SLPLSDAAN----HL--GVCVSVLKKICRD 62 (282)
Q Consensus 24 ~~~~~iTled---L~~yF-----~lPi~EAAr----~L--GVs~T~LKR~CR~ 62 (282)
..+..+|+++ |..|+ ++++.++|+ .+ ||+.+++-++.+.
T Consensus 7 ~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3455666664 55555 489999999 88 9999988887664
No 289
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=39.19 E-value=12 Score=28.04 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=9.5
Q ss_pred CCcHHHHHHHhCCChHHH
Q 023462 39 SLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~L 56 (282)
..++.++|++.|||..+|
T Consensus 32 ~~tv~~Ia~~agvs~~t~ 49 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTF 49 (177)
T ss_dssp TCCHHHHHHHHCCCHHHH
T ss_pred HhhHHHHHHHhCCcHhhH
Confidence 445555555555555554
No 290
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=39.05 E-value=51 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=37.1
Q ss_pred CCCCcCHHHHHhhcCCcHHHHHHHhC----CChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFSLPLSDAANHLG----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~lPi~EAAr~LG----Vs~T~LKR~CR~lGI~ 66 (282)
....+|..+|....+++..-+.+-+. ++..++.++|+-||+.
T Consensus 24 ~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 24 FLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp HTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 35579999999999999999998763 8899999999999995
No 291
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=38.76 E-value=27 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+++++|
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5689999999999999998888876
No 292
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=38.76 E-value=22 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=15.8
Q ss_pred CCCCCcCHHHHH----------hhcCCcHHHHHHHhCCChHHH
Q 023462 24 TSTKSLSFDDIS----------KYFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 24 ~~~~~iTledL~----------~yF~lPi~EAAr~LGVs~T~L 56 (282)
..+...|.+.|- .|-.+++.++|+++||+..+|
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 62 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSL 62 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
Confidence 344456666663 333455555555555555554
No 293
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=38.71 E-value=51 Score=23.46 Aligned_cols=43 Identities=5% Similarity=-0.020 Sum_probs=31.2
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++..-+.+-. ..+..+|.++|+.+||.
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~ 64 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNIN 64 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcC
Confidence 44456788888888888877777754 24677788888888873
No 294
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=38.68 E-value=33 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=31.0
Q ss_pred CchhhhhhhhcCCCCCCCCcCHHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 10 NSSISKAAASSSISTSTKSLSFDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 10 ~~~~~ka~as~~~k~~~~~iTledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
-.-|+|+..... ...=++.|+ .=.++..|.|+.+|+|.+|+.+++++|
T Consensus 10 ~~~~~~~~~~~~-----~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L 57 (380)
T 2hoe_A 10 HHHMPKSVRAEN-----ISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIF 57 (380)
T ss_dssp -----------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCchhHHHHH-----HHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666543322 222478888 888999999999999999999999976
No 295
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=38.55 E-value=15 Score=29.73 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.4
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFL 74 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlk 74 (282)
+.+++.+.|..|||+..+|-|+.+++ ||-+.-+++|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~ 224 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEIL 224 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEE
Confidence 45789999999999988877776654 77666666654
No 296
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=38.55 E-value=52 Score=22.92 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=34.7
Q ss_pred CCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 25 STKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 25 ~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
....+|..+|....+++..-+.+-. .++..+|.++|+.+|+.
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~ 72 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVS 72 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCC
Confidence 3456899999999999988888865 36778999999999983
No 297
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=38.44 E-value=56 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=34.8
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|.++|....+++...+.+-. .++..+|.++|+.+||.
T Consensus 37 R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~ 83 (99)
T 3g5g_A 37 RLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 83 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 55677888999998899888887754 47888899999999884
No 298
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=38.43 E-value=42 Score=30.62 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=25.9
Q ss_pred HHHhhcCCcHHHHHHHhCCCh---------HHHHHHHHHcCCCCCCcchhh
Q 023462 33 DISKYFSLPLSDAANHLGVCV---------SVLKKICRDNGLDRWPYRKFL 74 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~---------T~LKR~CR~lGI~RWPyRKlk 74 (282)
-|..||.|+-.+|.+.|.|-. ..+-..|+.+||.|=++=+|.
T Consensus 225 lLe~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~ 275 (310)
T 3zym_A 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDISGSG 275 (310)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 456899999999999997643 345578999998765555554
No 299
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=38.38 E-value=12 Score=27.95 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=9.7
Q ss_pred CCcHHHHHHHhCCChHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LK 57 (282)
..++.++|++.|||..+|-
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHhCCCcchHH
Confidence 4555555555555555543
No 300
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=38.29 E-value=30 Score=30.29 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=24.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.|.|+.||++.+++-|+.++|
T Consensus 163 ~~~~~s~~eLA~~lglsksTv~r~L~~L 190 (244)
T 2wte_A 163 ETKGTGITELAKMLDKSEKTLINKIAEL 190 (244)
T ss_dssp HHTCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3347899999999999999999998876
No 301
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=38.13 E-value=19 Score=27.58 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=18.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.| ..++.++|++.|||..+|-+.
T Consensus 33 G~-~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 33 GA-DASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp GG-GCCHHHHHHHHTCCHHHHHHH
T ss_pred CC-CCCHHHHHHHhCCchHHHHHH
Confidence 56 888888888888888887654
No 302
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=38.04 E-value=23 Score=30.96 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHhhcCCcHHHHHHHhCCChHHHHHHHHHcCCCC-----CCcchhhhhhcHHHHHH
Q 023462 34 ISKYFSLPLSDAANHLGVCVSVLKKICRDNGLDR-----WPYRKFLSGKSIEDIKK 84 (282)
Q Consensus 34 L~~yF~lPi~EAAr~LGVs~T~LKR~CR~lGI~R-----WPyRKlkSLksI~~l~e 84 (282)
|..+|...+++.|+.+|||.+.+-|.-.-..++. +|.-.--+.+.++.|..
T Consensus 37 L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~lv~~fp~p~dLs~~~~~~L~k 92 (189)
T 3mky_B 37 LQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQK 92 (189)
T ss_dssp HHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGGGSCHHHHHHHHH
T ss_pred HhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCCHHHHHHcCCHHhcCchhHHHHHH
Confidence 4478899999999999999999988766555543 45444445556666654
No 303
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.04 E-value=29 Score=31.19 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++.|+..=.++..|.|+.+|+|.+++.++.++|
T Consensus 22 l~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L 54 (406)
T 1z6r_A 22 YRLIDQLGPVSRIDLSRLAQLAPASITKIVHEM 54 (406)
T ss_dssp HHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 566677778999999999999999999999876
No 304
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=37.98 E-value=19 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=29.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCcchhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPYRKFL 74 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPyRKlk 74 (282)
-|+..+.|++||||.|++....++| | |..-|+|-..
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~ 90 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVF 90 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeE
Confidence 4689999999999999999888877 5 3556776554
No 305
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=37.84 E-value=22 Score=27.95 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=32.2
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKY 85 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~ 85 (282)
+.+++++.|..||++..++-|+.+++ ||-..-+++|.-+ ..+.|+++
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~-d~~~L~~~ 194 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLL-DLKGLKEL 194 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES-CHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe-CHHHHHHH
Confidence 45789999999999998888777655 7766555555432 34444443
No 306
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.79 E-value=6.9 Score=33.47 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=0.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+++|+|+++|||.+|+-|..+.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35778888888888887776653
No 307
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=37.69 E-value=60 Score=22.89 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++..-+.+-+ .++..++.++|+-+|+.
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~ 63 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSS 63 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 345899999999999998888765 46788999999999984
No 308
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=37.59 E-value=22 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=11.8
Q ss_pred hcCCcHHHHHHHhCCChHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LK 57 (282)
|-...+.++|++.||+..+|.
T Consensus 41 ~~~~s~~~IA~~agvs~~tlY 61 (231)
T 2zcx_A 41 IREITLTDIAATVGMHKSALL 61 (231)
T ss_dssp STTCCHHHHHHHHTSCHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHH
Confidence 335556666666666655553
No 309
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=37.58 E-value=24 Score=29.19 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=30.6
Q ss_pred CcCHHHHHhhcCCcHHHHHHHhC--CChHHHHHHHHHcCCCCCCc
Q 023462 28 SLSFDDISKYFSLPLSDAANHLG--VCVSVLKKICRDNGLDRWPY 70 (282)
Q Consensus 28 ~iTledL~~yF~lPi~EAAr~LG--Vs~T~LKR~CR~lGI~RWPy 70 (282)
.+.|..||..|.|.+.|||..+| |+.-+-.+- +.|=.+=|+
T Consensus 5 ~~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqW--E~G~~~IP~ 47 (120)
T 1s4k_A 5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRW--EAGDIPISP 47 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHH--HHTSSCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHH--HCCCCCCCH
Confidence 45788999999999999999998 887775543 344444443
No 310
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.44 E-value=30 Score=26.61 Aligned_cols=28 Identities=18% Similarity=-0.007 Sum_probs=24.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+=.+++.+.|+.|||+.+++-+++.+|
T Consensus 57 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 57 AKPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HCTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3346889999999999999999988877
No 311
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=37.23 E-value=23 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.9
Q ss_pred cCHHHHHhhc-----CCcHHHHHHHhCCChHHHHHHHH----HcCC
Q 023462 29 LSFDDISKYF-----SLPLSDAANHLGVCVSVLKKICR----DNGL 65 (282)
Q Consensus 29 iTledL~~yF-----~lPi~EAAr~LGVs~T~LKR~CR----~lGI 65 (282)
+++.+|+ || +-.+..||++|||+.++|-+.-+ ++|+
T Consensus 10 m~l~~L~-~f~~v~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 54 (310)
T 2esn_A 10 LDLNLLL-VFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDD 54 (310)
T ss_dssp SCTTHHH-HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred cCHHHHH-HHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCC
Confidence 5566664 33 56899999999999998866665 5686
No 312
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=37.18 E-value=31 Score=26.40 Aligned_cols=33 Identities=3% Similarity=-0.038 Sum_probs=26.4
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..|...=.+++.+.|+.|||+.+++-++..++
T Consensus 56 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 56 LMRLYREDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444446889999999999999999988877
No 313
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=37.15 E-value=21 Score=28.88 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=14.3
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-.+++.++|++.||+..+|-+
T Consensus 60 G~~~~t~~~IA~~aGvs~~tlY~ 82 (255)
T 3g1o_A 60 PLADISVDDLAKGAGISRPTFYF 82 (255)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCccCcHHHHHHHhCCCHHHHHH
Confidence 34466666777777776666644
No 314
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.11 E-value=30 Score=31.54 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..|+..=.++..|.|+.+|+|.+++.+++++|
T Consensus 45 l~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L 77 (429)
T 1z05_A 45 YKLIDQKGPISRIDLSKESELAPASITKITREL 77 (429)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 566667778999999999999999999999876
No 315
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=36.88 E-value=25 Score=28.64 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLS 75 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkS 75 (282)
+.+++++.|..|||+..+|-|+.+++ ||-+.-+++|.-
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 46788999999999999988887665 876766666653
No 316
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=36.79 E-value=30 Score=29.96 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=24.9
Q ss_pred HHHHhhcCCcHHHHHHHhCCChHHHHHHHHH
Q 023462 32 DDISKYFSLPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 32 edL~~yF~lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
-.|+.+-+++.+|+|..|||+..++|....+
T Consensus 120 ~~L~~~eg~s~~EIA~~lgis~~tVks~l~r 150 (286)
T 3n0r_A 120 FLLTALEGFTPTEAAQILDCDFGEVERLIGD 150 (286)
T ss_dssp HHHHHTTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 3455667899999999999999998875543
No 317
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=36.65 E-value=20 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=31.7
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKK 84 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e 84 (282)
+.+++++.|..||++..+|-|..+++ |+-.--+++|.-+ ..+.|++
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~-d~~~L~~ 186 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLL-DLAALER 186 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEEC-CHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe-CHHHHHH
Confidence 45789999999999998888777665 7755555555432 2444443
No 318
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.37 E-value=21 Score=26.15 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-+..+++
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHH
Confidence 5789999999999999888888766
No 319
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.20 E-value=25 Score=26.39 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=13.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-.+++.++|++.|||..+|-+
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHH
T ss_pred CCccCCHHHHHHHhCCCchhHHH
Confidence 34456666666666666666643
No 320
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=36.19 E-value=35 Score=27.48 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCChHH----HHHHHHHcCCC
Q 023462 39 SLPLSDAANHLGVCVSV----LKKICRDNGLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~----LKR~CR~lGI~ 66 (282)
+++.+++|+.|++|..| ++++.+++|+.
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999885 45667777773
No 321
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=36.10 E-value=24 Score=27.93 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=27.6
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKF 73 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKl 73 (282)
+.+++++.|..||++..+|-|+.+++ ||-+.-+++|
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i 224 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTV 224 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEE
Confidence 35789999999999999988887765 6655544544
No 322
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=36.03 E-value=27 Score=27.78 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=32.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKYA 86 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~a 86 (282)
+.+++++.|..||++..+|-|+.+++ ||-.--+++|.-+ ..+.|++++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~-d~~~L~~~~ 229 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKII-DCDRLQKTA 229 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEES-CHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEe-CHHHHHHHh
Confidence 46789999999999998887777655 7766555655432 344455443
No 323
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=35.75 E-value=14 Score=27.63 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=10.3
Q ss_pred cCCcHHHHHHHhCCChHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LK 57 (282)
-.+++.++|++.|||..+|.
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHH
Confidence 34555555555555555543
No 324
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=35.65 E-value=25 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHH----HcCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICR----DNGLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR----~lGI~ 66 (282)
+-.+..||++|||+.++|-+.-+ ++|++
T Consensus 16 ~gs~t~AA~~L~isq~avS~~i~~LE~~lg~~ 47 (305)
T 3fxq_A 16 VGSLRAAAQLLHLSQPALSAAIQQLEDELKAP 47 (305)
T ss_dssp HSCHHHHHHHTTCCHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCe
Confidence 56789999999999988776666 45863
No 325
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=35.48 E-value=36 Score=29.89 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=28.1
Q ss_pred CHHHHHhhc--CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 30 SFDDISKYF--SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 30 TledL~~yF--~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
-++.|..|| +..+.++|+.|+|...||.-+-++.
T Consensus 198 ll~TL~~yl~~~~~~~~tA~~L~iHrNTl~yRL~ri 233 (262)
T 3onq_A 198 TYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRA 233 (262)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 478999999 4789999999999999987655543
No 326
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=35.45 E-value=24 Score=26.70 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=20.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-..++.++|++.|||..+|.+.+
T Consensus 31 G~~~~t~~~IA~~agvs~~t~Y~~F 55 (191)
T 4aci_A 31 GYEGATVRRLEEATGKSRGAIFHHF 55 (191)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCchHHHHHC
Confidence 5557889999999999988886654
No 327
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=35.44 E-value=25 Score=29.51 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.9
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
=.++..|.|+.||||.+++.++.++|
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 36899999999999999999888765
No 328
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.42 E-value=23 Score=26.70 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.+.|+.|+|+.+++-+++.+|
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4689999999999999999999887
No 329
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=35.36 E-value=16 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
|-+||.+| |+..+++..+|++.||.
T Consensus 7 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs 35 (194)
T 3bqz_B 7 ILGVAKELFIKNGYNATTTGEIVKLSESS 35 (194)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHhCCC
Confidence 34566554 99999999999999995
No 330
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=35.26 E-value=22 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=18.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|.+.
T Consensus 31 G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 31 GVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCceeehhh
Confidence 455688888888888888887654
No 331
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.11 E-value=34 Score=26.03 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.++..|+|+.|||+.+++-+..+.| |+
T Consensus 56 ~~s~~eLa~~l~is~stvs~~L~~L~~~Gl 85 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHLRTLYKQGV 85 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 5789999999999999998887764 74
No 332
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=34.98 E-value=38 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCCCCCC
Q 023462 31 FDDISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGLDRWP 69 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI~RWP 69 (282)
++-|+.+=...+.|.++.| +|+.+|+-|-.+++|+.+=|
T Consensus 11 ~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~vKv~ 54 (149)
T 1b4a_A 11 REIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVP 54 (149)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCeEEE
Confidence 3445677788999999999 99999999999999997766
No 333
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=34.84 E-value=45 Score=24.54 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.+++.|+|+.|||+.+++-+..+.| |+
T Consensus 39 ~~~~~ela~~l~is~stvs~~L~~L~~~Gl 68 (106)
T 1r1u_A 39 EASVGHISHQLNLSQSNVSHQLKLLKSVHL 68 (106)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 5789999999999999988877654 75
No 334
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.58 E-value=35 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.++|+.|||+.+++-++.++|
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 6789999999999999999888876
No 335
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=34.53 E-value=30 Score=27.49 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLS 75 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkS 75 (282)
.+++++.|..|||+..+|-|+.+++ ||-+.-+++|.-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 4789999999999988887776554 776666666653
No 336
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=34.49 E-value=64 Score=23.91 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|.++|....+++...+++-. .++..+|.++|+.|||.
T Consensus 30 R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 76 (114)
T 3vk0_A 30 RVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVA 76 (114)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 44566888888888888888777754 36778888888888874
No 337
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.36 E-value=23 Score=26.75 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=19.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 34 G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 34 GAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHhccHHHHHHHhCCCHHHHHHH
Confidence 556788999999999998887664
No 338
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=34.35 E-value=25 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.8
Q ss_pred CcHHHHHHH--hCCChHHHHHHHHHcCCCCCCcchhhh
Q 023462 40 LPLSDAANH--LGVCVSVLKKICRDNGLDRWPYRKFLS 75 (282)
Q Consensus 40 lPi~EAAr~--LGVs~T~LKR~CR~lGI~RWPyRKlkS 75 (282)
+..+|.|.. |..+...+.+++++-| |++|+...
T Consensus 5 ~ta~ELa~l~glP~s~~gi~~~A~re~---W~~R~r~G 39 (69)
T 1g4d_A 5 CSPQEIMAADGMPGSVAGVHYRANVQG---WTKRKKEG 39 (69)
T ss_dssp BCHHHHHTSTTSCSSHHHHHHHHHHHT---CCEEECCS
T ss_pred CcHHHHhcCCCCCCCHHHHHHHHHHCC---CCeeeccc
Confidence 344555554 4577778888888876 99999874
No 339
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=34.34 E-value=4 Score=32.68 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=26.0
Q ss_pred HHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 33 DISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.|..--.++..+.|+.||||.+++.+..++|
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L 51 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5666667899999999999999988777765
No 340
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=34.27 E-value=36 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
+.++..-.++++.++|+.+|||.+++-++-
T Consensus 35 Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 35 VKSYLQQHNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCChHHHHHHH
Confidence 444555579999999999999999999884
No 341
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=34.19 E-value=37 Score=25.73 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=26.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
.+=.+++.+.|+.|||+.+++-+.+.++ | |.|=|
T Consensus 52 ~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 52 EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 3446789999999999999999988877 5 44544
No 342
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=34.15 E-value=31 Score=26.25 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.3
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-..++.++|++.|||..+|-+.
T Consensus 20 G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 20 GYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHH
Confidence 455678888888888888887654
No 343
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.10 E-value=21 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=10.3
Q ss_pred hcCCcHHHHHHHhCCChHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~L 56 (282)
|-.+++.++|++.||+..+|
T Consensus 62 ~~~~t~~~IA~~aGvs~~tl 81 (236)
T 3q0w_A 62 LADISVDDLAKGAGISRPTF 81 (236)
T ss_dssp GGGCCHHHHHHHHTCCHHHH
T ss_pred cccCCHHHHHHHhCCcHHHH
Confidence 33455555555555555554
No 344
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.02 E-value=67 Score=22.68 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=30.4
Q ss_pred cCHHHHHhhcCCcHHHHHHHh-------CCChHHHHH---HHHHcCC-CCCCcchhh
Q 023462 29 LSFDDISKYFSLPLSDAANHL-------GVCVSVLKK---ICRDNGL-DRWPYRKFL 74 (282)
Q Consensus 29 iTledL~~yF~lPi~EAAr~L-------GVs~T~LKR---~CR~lGI-~RWPyRKlk 74 (282)
+|+.||.+..+++..-+.+.| +|+..+.+| .++++|. +.+.-|.++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 478899999999999999887 478777776 4558996 344444443
No 345
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=34.01 E-value=30 Score=26.42 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=14.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|.+
T Consensus 31 G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 31 GFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCccCCHHHHHHHhCCChHHHHH
Confidence 44456666666666666666643
No 346
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=33.83 E-value=8.7 Score=32.79 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred CHHHHHhhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 30 SFDDISKYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 30 TledL~~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+..++.--+|++.+.|+.+||+.++|.++-+
T Consensus 34 ~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~ 65 (311)
T 4ich_A 34 RVRGLIHSRPGAQREFAAAIGLDESKLSKSLN 65 (311)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHc
Confidence 45567777788888899999888877766543
No 347
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=33.74 E-value=26 Score=26.47 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
++.++|.|++++++.+++-++.++|-
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 69999999999999999988888773
No 348
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=33.52 E-value=25 Score=26.56 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=11.0
Q ss_pred hcCCcHHHHHHHhCCChHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LK 57 (282)
|-.+++.++|++.||+..+|-
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y 52 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLY 52 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHH
T ss_pred cccccHHHHHHHhCCchHHHH
Confidence 334555555555555555553
No 349
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.41 E-value=37 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=24.9
Q ss_pred CCCCCcCHHHHH----------hhcCCcHHHHHHHhCCChHHHHH
Q 023462 24 TSTKSLSFDDIS----------KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 24 ~~~~~iTledL~----------~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
..+..++.+.|- .|-.+.+.++|+++||+..+|.+
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred CCCcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHH
Confidence 344556777664 45578999999999999888765
No 350
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=33.39 E-value=41 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.|+|+.||++.+++-|+.+.|
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4889999999999999999998865
No 351
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.17 E-value=22 Score=26.55 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHcCCCC-CCcchhh
Q 023462 50 GVCVSVLKKICRDNGLDR-WPYRKFL 74 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~R-WPyRKlk 74 (282)
|+..+++..+|++.||.+ =-|+-+.
T Consensus 23 G~~~~t~~~Ia~~agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 23 GYHATGLNQIVKESGAPKGSLYHFFP 48 (191)
T ss_dssp CTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred CccccCHHHHHHHHCCCchhHHHHcc
Confidence 444555555555555432 1255555
No 352
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=33.16 E-value=27 Score=27.70 Aligned_cols=23 Identities=4% Similarity=-0.091 Sum_probs=15.4
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|.+
T Consensus 47 G~~~~s~~~IA~~aGvs~~tlY~ 69 (226)
T 2pz9_A 47 GIAGARVDRIAKQARTSKERVYA 69 (226)
T ss_dssp HHHHCCHHHHHHHTTSCHHHHHH
T ss_pred CcccCcHHHHHHHHCCChHHHHH
Confidence 34467777777777777777644
No 353
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=33.01 E-value=77 Score=22.33 Aligned_cols=43 Identities=16% Similarity=-0.010 Sum_probs=36.6
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|.++|....+++..-+++-. .++..+|.++|+-||++
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 69 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL 69 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCG
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 45567999999999999999888853 57899999999999984
No 354
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=32.85 E-value=26 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=18.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+.+.++|++.|||..+|.+.
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 25 GFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCcHHHHHHHhCCCHHHHHHH
Confidence 455788888888888888887654
No 355
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=32.85 E-value=26 Score=26.30 Aligned_cols=25 Identities=8% Similarity=0.095 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.+.|+.|||+.+++-++..++
T Consensus 50 ~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 50 KLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 4679999999999999999998877
No 356
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=32.69 E-value=8.4 Score=34.28 Aligned_cols=13 Identities=46% Similarity=0.780 Sum_probs=1.7
Q ss_pred HHhHHHhHHhhhc
Q 023462 238 KRTVEEGREALKL 250 (282)
Q Consensus 238 k~aveeGR~~l~~ 250 (282)
+|||||||+.-|-
T Consensus 61 rkaveegrevtnw 73 (239)
T 2x3m_A 61 RKAVEEGREVTNW 73 (239)
T ss_dssp ----------CCH
T ss_pred HHHHHhccccccH
Confidence 6899999997664
No 357
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=32.67 E-value=36 Score=24.37 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CCcHHHH----HHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDA----ANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EA----Ar~LGVs~T~LKR~CR~l 63 (282)
.+.+.+. |+.|||+.+++-+..++|
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5678888 899999999999888876
No 358
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.64 E-value=25 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.| =-|+-+.+
T Consensus 13 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 13 IFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 46677766 999999999999999953 34555554
No 359
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.64 E-value=24 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=19.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
=.+++.+.|+.|||+.+++-++++++ | |.|-|
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 46889999999999988888887766 5 56665
No 360
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=32.57 E-value=20 Score=29.76 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=28.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhh
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFL 74 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlk 74 (282)
.+++.+.|..||++..+|-|+.+++ ||-+.-+++|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~ 255 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIV 255 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 5789999999999998888877665 76665555553
No 361
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.31 E-value=37 Score=26.45 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=14.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 25 G~~~~s~~~IA~~aGvs~~tiY~ 47 (202)
T 2d6y_A 25 GIAGARIDRIAAEARANKQLIYA 47 (202)
T ss_dssp TTTSCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 34466666666666666666643
No 362
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=32.23 E-value=33 Score=25.54 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPY 70 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPy 70 (282)
.+++.++|+.|||+.+++-+..+++ | |.|=|.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 5689999999999999888877766 4 455443
No 363
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=32.18 E-value=38 Score=25.58 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=24.4
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..=.+++.+.|+.|||+.+++-+..+++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4457889999999999999999888877
No 364
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=32.12 E-value=45 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHH---HHcCCCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKIC---RDNGLDR 67 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~C---R~lGI~R 67 (282)
=.+.+.|.|++||||..|+.|-. ++.|+-+
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 36899999999999999998864 5668754
No 365
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=32.11 E-value=30 Score=25.04 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.++..|.|+.|||+.+++-+..+.| |+
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~~~Gl 65 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVLRESGI 65 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4789999999999999998888776 75
No 366
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.11 E-value=67 Score=25.58 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|.++|....+++..-+++-. .++..+|.++|+.+||.
T Consensus 20 r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~ 66 (192)
T 1y9q_A 20 RKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEAS 66 (192)
T ss_dssp HHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 44567899999999999988888765 46788999999999983
No 367
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.09 E-value=34 Score=25.49 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=4.9
Q ss_pred HHHHHHHHcCC
Q 023462 55 VLKKICRDNGL 65 (282)
Q Consensus 55 ~LKR~CR~lGI 65 (282)
+.+-+++.+||
T Consensus 126 s~~EIA~~lgi 136 (164)
T 3mzy_A 126 SYREIATILSK 136 (164)
T ss_dssp CHHHHHHHHTC
T ss_pred CHHHHHHHHCC
Confidence 33444444444
No 368
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=32.08 E-value=22 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred cHHHHHHH--hCCChHHHHHHHHHcCCCCCCcchhhh
Q 023462 41 PLSDAANH--LGVCVSVLKKICRDNGLDRWPYRKFLS 75 (282)
Q Consensus 41 Pi~EAAr~--LGVs~T~LKR~CR~lGI~RWPyRKlkS 75 (282)
+.+|.|.. |..+...+.+++++-| |++|+...
T Consensus 6 ta~ELa~l~gLP~s~~gi~~~A~re~---W~~R~r~G 39 (76)
T 1tns_A 6 SPKELANLPGLPKTSAGVIYVAKKQG---WQNRTRAG 39 (76)
T ss_dssp CHHHHTTCSSSCSSHHHHHHHHHTTC---CCCCCCTT
T ss_pred cHHHHhcCCCCCCCHHHHHHHHHHcC---Ccceeccc
Confidence 44555544 6677888888888877 99999875
No 369
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=32.07 E-value=38 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.||..++.++|..|||+...+.++-+
T Consensus 45 GYL~~~l~eia~~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 45 GFLSKSVEEISDVLRCSVEELEKVRQ 70 (76)
T ss_dssp STTCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999887766544
No 370
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=32.00 E-value=34 Score=28.16 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.6
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+..++.++|+..||+..+++++++++
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l 183 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLI 183 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 371
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=31.93 E-value=9.7 Score=32.38 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=0.0
Q ss_pred cHHHHHHHhCCChHHHHHHHHHc
Q 023462 41 PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+++|+|+..|||.+|+-|.-+..
T Consensus 4 ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 57788888888888777765543
No 372
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=31.86 E-value=51 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
++++.++|+.||+|.+++.++.|=+.++
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~Lp 79 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDLP 79 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcCC
Confidence 7899999999999999999888776653
No 373
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=31.83 E-value=9.8 Score=32.39 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=0.0
Q ss_pred cHHHHHHHhCCChHHHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~ 62 (282)
+++|+|+++|||.+|+-|.-+.
T Consensus 7 ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 7 TIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp ----------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHcC
Confidence 4666677777776666665543
No 374
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=31.78 E-value=28 Score=25.98 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---CC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---GL 65 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---GI 65 (282)
.+++.|.|+.|||+.+++.+..+.| |+
T Consensus 38 ~~s~~eLa~~lgis~stvs~~L~~L~~~Gl 67 (108)
T 2kko_A 38 ERAVEAIATATGMNLTTASANLQALKSGGL 67 (108)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 5779999999999999998877765 75
No 375
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=31.78 E-value=33 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.1
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
++..+.|+.+||+..+|.++.++|
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L 54 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYL 54 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999988755
No 376
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=31.67 E-value=27 Score=25.94 Aligned_cols=31 Identities=6% Similarity=0.153 Sum_probs=24.8
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
.+++.++|+.|||+.+++-+..+++ | |.|-|
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4689999999999999888888776 5 44544
No 377
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=31.60 E-value=31 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=12.5
Q ss_pred hcCCcHHHHHHHhCCChHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LK 57 (282)
|-.+++.++|++.|||..+|-
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY 45 (192)
T 2zcm_A 25 YDGTTLDDISKSVNIKKASLY 45 (192)
T ss_dssp TTTCCHHHHHHHTTCCHHHHH
T ss_pred cccCCHHHHHHHhCCChHHHH
Confidence 345666666666666666653
No 378
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=31.57 E-value=30 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.|.|+.|||+.+++-+...+|
T Consensus 53 ~~t~~eLa~~l~~~~~tvs~~l~~L 77 (127)
T 2frh_A 53 EYYLKDIINHLNYKQPQVVKAVKIL 77 (127)
T ss_dssp EEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4789999999999999998888876
No 379
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=31.52 E-value=31 Score=25.71 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ =-|+-+.+
T Consensus 14 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 35677666 999999999999999953 22444444
No 380
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=31.52 E-value=46 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHHHcC
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICRDNG 64 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR~lG 64 (282)
.|=+..+.+.|++.|+|..++.+++++..
T Consensus 89 ~f~G~n~~eLArkYgLSer~I~~Ii~~~r 117 (129)
T 1rr7_A 89 DFNGRNVSELTTRYGVTFNTVYKAIRRMR 117 (129)
T ss_dssp HCCSSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34468899999999999999999997654
No 381
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.37 E-value=36 Score=25.39 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=13.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 27 G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 27 GYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchhhh
Confidence 34456666666666666666643
No 382
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=31.33 E-value=28 Score=25.93 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=16.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-.+++.++|++.|||..+|-+
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 25 GYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp CGGGCCHHHHHHHHCCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchHHHH
Confidence 44567777777777777777754
No 383
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=31.26 E-value=20 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 19 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 19 MLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 45777666 999999999999999952 22444444
No 384
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=31.18 E-value=17 Score=27.42 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=20.5
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
|-+||.+| |+..+++..+|++.||.
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs 41 (206)
T 3dew_A 13 LMEVATELFAQKGFYGVSIRELAQAAGAS 41 (206)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCcccCcHHHHHHHhCCC
Confidence 34566554 99999999999999995
No 385
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=31.00 E-value=19 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 50 GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|...++++.+|++.||.| ==|+-+.+
T Consensus 30 G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 30 AYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp CGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred CCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 555666666666666532 22444544
No 386
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=30.85 E-value=10 Score=32.67 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=0.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++|+|+..|||.+|+-|.-...
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 367788888888888877765543
No 387
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=30.83 E-value=33 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l 63 (282)
-|| ..+.|+.+|||.+++.+..+.|
T Consensus 33 ~lPse~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 33 PLPSEREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 354 8999999999999999988876
No 388
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.83 E-value=10 Score=32.22 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=0.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.+++|+|++.|||.+|+-|.-+
T Consensus 4 ~ti~diA~~agVS~~TVSrvln 25 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLS 25 (338)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 3578888999998888877654
No 389
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=30.82 E-value=82 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++...+++-. .++..+|.++|+.|||.
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 91 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVK 91 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCB
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 567899999999999998888765 35678899999999873
No 390
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=30.78 E-value=79 Score=23.21 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++...+.+-. .++..+|.++|+-|||.
T Consensus 37 R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~ 83 (117)
T 3f52_A 37 RADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGAS 83 (117)
T ss_dssp HHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 34456788888888888877777654 37778888888888874
No 391
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=30.74 E-value=28 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=17.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.| .+++.++|++.|||..+|-+.
T Consensus 30 G~-~~t~~~IA~~agvs~~tlY~~ 52 (196)
T 2qwt_A 30 GL-GVPMDEIARRAGVGAGTVYRH 52 (196)
T ss_dssp CT-TSCHHHHHHHTTSCHHHHHHH
T ss_pred CC-CCCHHHHHHHhCCCHHHHHHH
Confidence 45 788888888888888887653
No 392
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=30.73 E-value=31 Score=26.02 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-.+++.++|++.|||..+|-+.+
T Consensus 24 G~~~~t~~~IA~~agvs~~tlY~~F 48 (186)
T 2jj7_A 24 GYEGTSIQEIAKEAKVNVAMASYYF 48 (186)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCccCCHHHHHHHhCCChhhhhhhc
Confidence 5557899999999999999887654
No 393
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=30.57 E-value=38 Score=26.07 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+.+.|+|+.|||+.+++-+..+.|
T Consensus 59 ~~s~~ela~~lgis~stvs~~L~~L 83 (122)
T 1r1t_A 59 ELCVGDLAQAIGVSESAVSHQLRSL 83 (122)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4789999999999999998877765
No 394
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=30.44 E-value=37 Score=29.39 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCcCHHHHHh----hcCCcHHHHHHHhCCChHHHH----HHHHHcCC
Q 023462 27 KSLSFDDISK----YFSLPLSDAANHLGVCVSVLK----KICRDNGL 65 (282)
Q Consensus 27 ~~iTledL~~----yF~lPi~EAAr~LGVs~T~LK----R~CR~lGI 65 (282)
..||-.+..= .-+++.+|+|+.||||..|+| ++.+++|+
T Consensus 196 ~~Lt~re~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4577666542 349999999999999988765 45556665
No 395
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=30.43 E-value=22 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=20.0
Q ss_pred HHHHHHh----CCChHHHHHHHHHcCCC-CCCcchhhhh
Q 023462 43 SDAANHL----GVCVSVLKKICRDNGLD-RWPYRKFLSG 76 (282)
Q Consensus 43 ~EAAr~L----GVs~T~LKR~CR~lGI~-RWPyRKlkSL 76 (282)
-+||.+| |+..+++..+|++.||. .==|+-+.+.
T Consensus 18 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 56 (199)
T 3on2_A 18 LARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDR 56 (199)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSH
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCH
Confidence 4455444 77777778888888773 3446666653
No 396
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=30.16 E-value=30 Score=26.59 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=13.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 29 G~~~~t~~~IA~~agvsk~tlY~ 51 (192)
T 2fq4_A 29 GFKAVTVDKIAERAKVSKATIYK 51 (192)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccccHHHHHHHcCCCHHHHHH
Confidence 34456666666666666666643
No 397
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.09 E-value=39 Score=25.66 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=9.4
Q ss_pred HhCCCh-HHHHHHHHHcCCC
Q 023462 48 HLGVCV-SVLKKICRDNGLD 66 (282)
Q Consensus 48 ~LGVs~-T~LKR~CR~lGI~ 66 (282)
.|+.+. |+++.+.|+||+.
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~s 42 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKIN 42 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCC
T ss_pred hCCCCcchHHHHHHHHHCCC
Confidence 444444 5555555555553
No 398
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=30.07 E-value=39 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=16.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-..++.++|++.|||..+|-+.
T Consensus 29 G~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 29 GYYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp CTTTCCHHHHHHHHCSCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCchhHHHH
Confidence 344677888888888887777553
No 399
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=30.04 E-value=29 Score=26.50 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=13.3
Q ss_pred CCcHHHHHHHhCCChHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR 58 (282)
+..+.++|++.|||..+|.+
T Consensus 34 ~~s~~~IA~~agvs~~tlY~ 53 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHhCCChHHHHH
Confidence 46777777777777666644
No 400
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=30.03 E-value=88 Score=25.62 Aligned_cols=55 Identities=11% Similarity=0.260 Sum_probs=37.8
Q ss_pred HhCCChHHHHHHHHHcCCCCCCcchhhhh--hcHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Q 023462 48 HLGVCVSVLKKICRDNGLDRWPYRKFLSG--KSIEDIKKYAA-------REKSKELAELSKIARKS 104 (282)
Q Consensus 48 ~LGVs~T~LKR~CR~lGI~RWPyRKlkSL--ksI~~l~e~a~-------~EK~k~llel~k~~~~~ 104 (282)
..||+.++=+.+|.++||. |..++..| .-|+.|.++.+ .=+....++|+++.+=+
T Consensus 22 I~GIG~~~A~~I~~~~gi~--~~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkRL~~I~ 85 (126)
T 2vqe_M 22 IYGIGKARAKEALEKTGIN--PATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIG 85 (126)
T ss_dssp SSSCCSHHHHHHTTTTTCC--TTSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHcCCC--cccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHH
Confidence 3599999999999999996 67777765 35777766543 22234456666665533
No 401
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.02 E-value=30 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=17.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-..++.++|++.|||..+|.+.
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 25 GFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred ChHhcCHHHHHHHhCCCchHHHHH
Confidence 455678888888888888887553
No 402
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=30.00 E-value=26 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHHh----CCChHHHHHHHHHcCCC-CCCcchhhh
Q 023462 43 SDAANHL----GVCVSVLKKICRDNGLD-RWPYRKFLS 75 (282)
Q Consensus 43 ~EAAr~L----GVs~T~LKR~CR~lGI~-RWPyRKlkS 75 (282)
-+||.+| |+..|++..||++.||. .==|+-+.+
T Consensus 20 l~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~s 57 (203)
T 3ccy_A 20 IERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDS 57 (203)
T ss_dssp HHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSC
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCC
Confidence 4455444 77777777777777763 334666665
No 403
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=29.99 E-value=36 Score=27.55 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=27.1
Q ss_pred CcCHHHHHhhc----CCcHHHHHHHhCCChHHHHHHHH----HcCCC
Q 023462 28 SLSFDDISKYF----SLPLSDAANHLGVCVSVLKKICR----DNGLD 66 (282)
Q Consensus 28 ~iTledL~~yF----~lPi~EAAr~LGVs~T~LKR~CR----~lGI~ 66 (282)
.+++.+|+-+. +-.+..||+.||||.+++-+.-+ ++|++
T Consensus 23 ~~~~~~L~~f~av~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~~ 69 (135)
T 2ijl_A 23 RLGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQP 69 (135)
T ss_dssp EESHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSC
T ss_pred cCCHHHHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCe
Confidence 45666664222 35788999999999988766655 56763
No 404
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=29.98 E-value=35 Score=26.21 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.4
Q ss_pred CCChHHHHHHHHHcCC
Q 023462 50 GVCVSVLKKICRDNGL 65 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI 65 (282)
|+..+++..+|++.||
T Consensus 34 G~~~~t~~~IA~~agv 49 (218)
T 3gzi_A 34 PYAQVSIREIASLAGT 49 (218)
T ss_dssp CCSCCCHHHHHHHHTS
T ss_pred CCCcCCHHHHHHHhCC
Confidence 5555555555555555
No 405
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=29.88 E-value=46 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=24.7
Q ss_pred cHHHHHHHhCCChHHHHHHHHHcCCCCCCcc
Q 023462 41 PLSDAANHLGVCVSVLKKICRDNGLDRWPYR 71 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR~lGI~RWPyR 71 (282)
++.++|+.|||+.+++-+.++++==..|=.|
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 7999999999999999999988733334343
No 406
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=29.86 E-value=31 Score=26.09 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=16.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 25 G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 25 GFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCChHHHHHH
Confidence 455677777777777777776553
No 407
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.85 E-value=41 Score=26.80 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=9.0
Q ss_pred CCcHHHHHHHhCCChHHH
Q 023462 39 SLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~L 56 (282)
.+++.++|++.|||..+|
T Consensus 63 ~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSV 80 (229)
T ss_dssp TCCHHHHHHHHTCCHHHH
T ss_pred hccHHHHHHHHCCCchhH
Confidence 445555555555555444
No 408
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=29.81 E-value=23 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R 67 (282)
|-+||.+| |+..+++..+|++.||.+
T Consensus 14 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~ 43 (193)
T 2dg8_A 14 ILAATLDLIAEEGIARVSHRRIAQRAGVPL 43 (193)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHhChhhccHHHHHHHhCCCc
No 409
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=29.79 E-value=41 Score=26.01 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=21.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-..++.++|++.||+..+|-+.+
T Consensus 32 G~~~~s~~~IA~~agvs~~t~Y~~F 56 (221)
T 3c2b_A 32 GEKALTTSGLARAANCSKESLYKWF 56 (221)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHhC
Confidence 5567999999999999999887754
No 410
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=29.78 E-value=21 Score=27.89 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 50 GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|+..+++..||++.||.+ ==|+-+.+
T Consensus 45 G~~~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 45 GARGLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp CTTTCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred ChhhccHHHHHHHcCCCcchHHHhCCC
Confidence 777777777777777732 23444444
No 411
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=29.72 E-value=42 Score=25.76 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=25.6
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWPY 70 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPy 70 (282)
.+++.+.|+.|||+.+++-+++++| | |.|-|.
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 5689999999999999999998877 5 455543
No 412
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=29.63 E-value=37 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=17.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|.+.
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCccCcHHHHHHHhCCCchhHHHH
Confidence 344677788888888887777543
No 413
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=29.57 E-value=39 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCC-ChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGV-CVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGV-s~T~LKR~CR~l 63 (282)
++++.++|+..|| |.+||-+.++++
T Consensus 28 G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 28 GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 7889999999999 888888887775
No 414
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=29.53 E-value=42 Score=29.99 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=23.9
Q ss_pred HHHhhcCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 33 DISKYFSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.|+..=.++..|.|++||||.+++.|..+.+
T Consensus 13 ~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 13 LLANGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp HHTTSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333335889999999999999998877644
No 415
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=29.45 E-value=40 Score=25.66 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=11.0
Q ss_pred hcCCcHHHHHHHhCCChHHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~LK 57 (282)
|-.+.+.++|++.|||..+|.
T Consensus 36 ~~~~s~~~Ia~~agvs~~t~Y 56 (212)
T 1pb6_A 36 FHGTRLEQIAELAGVSKTNLL 56 (212)
T ss_dssp TTTCCHHHHHHHTTSCHHHHH
T ss_pred cchhhHHHHHHHHCCChhHHH
Confidence 334555555555555555553
No 416
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=29.19 E-value=26 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.5
Q ss_pred HHHhhcCCcHHHHHHHhCCChH---------HHHHHHHHcCCCC
Q 023462 33 DISKYFSLPLSDAANHLGVCVS---------VLKKICRDNGLDR 67 (282)
Q Consensus 33 dL~~yF~lPi~EAAr~LGVs~T---------~LKR~CR~lGI~R 67 (282)
-|..||.|+-.+|-+.|.|-.. .+-..|+.+||.|
T Consensus 225 lLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~ 268 (271)
T 3zyl_A 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268 (271)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCc
Confidence 4668999999999999987443 4456799999865
No 417
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.12 E-value=12 Score=32.45 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred CcHHHHHHHhCCChHHHHHHHHH
Q 023462 40 LPLSDAANHLGVCVSVLKKICRD 62 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~ 62 (282)
.+++|+|++.|||.+|+-|.-+.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 35677777777777776665554
No 418
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=29.11 E-value=21 Score=27.70 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=9.5
Q ss_pred CCChHHHHHHHHHcCCC
Q 023462 50 GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~ 66 (282)
|+..+++..+|++.||.
T Consensus 29 G~~~~ti~~Ia~~agvs 45 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIP 45 (189)
T ss_dssp CTTTCCHHHHHHHHTCC
T ss_pred CcccccHHHHHHHhCCC
Confidence 55555555555555553
No 419
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=28.94 E-value=85 Score=24.93 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=31.1
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh-----CCChHHHHHHHHHcCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL-----GVCVSVLKKICRDNGL 65 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L-----GVs~T~LKR~CR~lGI 65 (282)
+....+|.++|....+++..-..+-. ..+..+|.++|+.|||
T Consensus 19 r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~ 65 (198)
T 2bnm_A 19 REQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGT 65 (198)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTS
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 34456788888888888887777643 3567788888888887
No 420
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=28.93 E-value=53 Score=24.02 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHcCCC
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDNGLD 66 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~lGI~ 66 (282)
=.++..|+|+.|||+.+++-+.-+.+-=.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35889999999999999999998887643
No 421
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.69 E-value=22 Score=27.08 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 17 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 17 ILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 34556554 999999999999999953 22444443
No 422
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.68 E-value=34 Score=25.63 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=12.3
Q ss_pred hhcCCcHHHHHHHhCCChHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~L 56 (282)
.|-..++.++|++.|||..+|
T Consensus 27 G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 27 GFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp CSTTCCHHHHHHHHTCCHHHH
T ss_pred CcccCCHHHHHHHhCCChhhH
Confidence 344556666666666666655
No 423
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=28.66 E-value=33 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=33.4
Q ss_pred cCCc--HHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhhhhhcHHHHHHHHHHHHH
Q 023462 38 FSLP--LSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFLSGKSIEDIKKYAAREKS 91 (282)
Q Consensus 38 F~lP--i~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlkSLksI~~l~e~a~~EK~ 91 (282)
+.+| +++.|..|||+..+|-|+.+++ || .--+++|. ....+.|++++..++.
T Consensus 175 ~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~-I~d~~~L~~~~~~~~~ 231 (237)
T 3fx3_A 175 VTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAE-IEDIALLRDYAESDPA 231 (237)
T ss_dssp EECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEE-ESCHHHHHHHHCC---
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEE-EcCHHHHHHHhcCCcc
Confidence 4455 8999999999999888887765 77 44444433 2346666666554443
No 424
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=28.66 E-value=26 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=17.8
Q ss_pred CCChHHHHHHHHHcCCC-CCCcchhhhh
Q 023462 50 GVCVSVLKKICRDNGLD-RWPYRKFLSG 76 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~-RWPyRKlkSL 76 (282)
|+..+++..+|++.||. .=-|+-+.+.
T Consensus 30 G~~~~t~~~IA~~agvs~~tlY~~F~sK 57 (217)
T 3nrg_A 30 DYDSVSINRITERAGIAKGSFYQYFADK 57 (217)
T ss_dssp CGGGCCHHHHHHHHTCCTTGGGGTCSSH
T ss_pred CcccCCHHHHHHHhCCcHHHHHHHcCCH
Confidence 77777777777777773 3446666663
No 425
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.61 E-value=12 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred cHHHHHHHhCCChHHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~CR 61 (282)
+++|+|+++|||.+|+-|.-.
T Consensus 8 ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 8 SLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp ---------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 466666666666666655443
No 426
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.54 E-value=12 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred cHHHHHHHhCCChHHHHHHH
Q 023462 41 PLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 41 Pi~EAAr~LGVs~T~LKR~C 60 (282)
+++|+|+++|||.+|+-|.-
T Consensus 14 ti~diA~~agVS~~TVSr~L 33 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRAL 33 (355)
T ss_dssp --------------------
T ss_pred cHHHHHHHhCCCHHHHHHHH
Confidence 35566666666666655444
No 427
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=28.50 E-value=33 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=22.3
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
+++.+.|+.|+|+.+++-+++.+|
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 52 LPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHH
Confidence 789999999999999999998877
No 428
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=28.48 E-value=33 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHcCCCC-CCcchhhhh
Q 023462 50 GVCVSVLKKICRDNGLDR-WPYRKFLSG 76 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~R-WPyRKlkSL 76 (282)
|+..+++..+|++.||.+ ==|+-+.+.
T Consensus 33 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 33 GYGATTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp CSTTCCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred CCCcCCHHHHHHHhCCCcChhhhcCCCH
Confidence 777777777777777743 236666653
No 429
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=28.47 E-value=39 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.2
Q ss_pred CC-cHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SL-PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~l-Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
-+ +..+.|+++|||.+++.+..+.|
T Consensus 28 ~lPse~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46 48899999999999999887765
No 430
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.12 E-value=35 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..++++.+|++.||.| ==|+-+.+
T Consensus 17 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 17 IYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 45777776 999999999999999963 22455554
No 431
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.03 E-value=28 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHhhc----CCcHHHHHHHh---C-------CChHHHHHHHHHcC
Q 023462 32 DDISKYF----SLPLSDAANHL---G-------VCVSVLKKICRDNG 64 (282)
Q Consensus 32 edL~~yF----~lPi~EAAr~L---G-------Vs~T~LKR~CR~lG 64 (282)
+.|..++ ++...+++..| | ||.+++.++.+++|
T Consensus 82 ~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~~ 128 (128)
T 1pdn_C 82 NRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRD 128 (128)
T ss_dssp HHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhcC
Confidence 3455443 47789999999 7 58999998887764
No 432
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=28.00 E-value=29 Score=26.51 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHcCCC-CCCcchhhhh
Q 023462 50 GVCVSVLKKICRDNGLD-RWPYRKFLSG 76 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~-RWPyRKlkSL 76 (282)
|+..+++..+|++.||. .==|+-+.+.
T Consensus 36 G~~~~t~~~IA~~agvs~~tlY~~F~sK 63 (216)
T 3qqa_A 36 GYQETSLSDIIKLSGGSYSNIYDGFKSK 63 (216)
T ss_dssp CTTTCCHHHHHHHHTTSCCSSSCSCCSH
T ss_pred ChhhCCHHHHHHHhCCCHHHHHHhcCCH
Confidence 78888888888888873 3446666664
No 433
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=27.98 E-value=37 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=17.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 25 G~~~~t~~~IA~~agvs~~t~Y~~ 48 (195)
T 3frq_A 25 GPIEFTLSGVAKEVGLSRAALIQR 48 (195)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHH
Confidence 445677888888888888777543
No 434
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.95 E-value=42 Score=26.12 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=22.7
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc---CCCCCC
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN---GLDRWP 69 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWP 69 (282)
+++.|.|+.|+|+.+++-++..++ |+-|-+
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 689999999999999988888766 643443
No 435
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=27.91 E-value=22 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCcHHHHHHHhCCChHHHHH
Q 023462 39 SLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR 58 (282)
..++.++|++.|||..+|-+
T Consensus 40 ~~tv~~Ia~~Agvs~~t~Y~ 59 (185)
T 3o60_A 40 SISIKDLCEQARVSRATFYR 59 (185)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHH
Confidence 45566666666666655543
No 436
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=27.90 E-value=22 Score=26.83 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=8.2
Q ss_pred CCChHHHHHHHHHcCC
Q 023462 50 GVCVSVLKKICRDNGL 65 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI 65 (282)
|+..+++..+|++.||
T Consensus 34 G~~~~s~~~Ia~~agv 49 (206)
T 3kz9_A 34 GIGRGGHADIAEIAQV 49 (206)
T ss_dssp CCSSCCHHHHHHHHTS
T ss_pred CcccccHHHHHHHhCC
Confidence 5555555555555554
No 437
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=27.89 E-value=28 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-..++.++|++.|||..+|.+.+
T Consensus 34 G~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 34 PYAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp CCSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHc
Confidence 5568999999999999999997654
No 438
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=27.87 E-value=45 Score=25.88 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=14.3
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 29 G~~~ts~~~IA~~aGvsk~tlY~ 51 (211)
T 3bhq_A 29 GYDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 34456666666666666666643
No 439
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=27.81 E-value=32 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred CcCHHHHHhhc----CCcHHHHHHHhCCChHHHHHHHH----HcCC
Q 023462 28 SLSFDDISKYF----SLPLSDAANHLGVCVSVLKKICR----DNGL 65 (282)
Q Consensus 28 ~iTledL~~yF----~lPi~EAAr~LGVs~T~LKR~CR----~lGI 65 (282)
.+++.+|+-+. +-.+..||++|||+.++|-|.-+ ++|+
T Consensus 5 ~m~l~~L~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 50 (303)
T 3isp_A 5 QLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQ 50 (303)
T ss_dssp CCCSHHHHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCC
Confidence 35555554222 56789999999999988766555 5686
No 440
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=27.81 E-value=86 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.7
Q ss_pred CHHHHHhhc-C---Cc----HHHHHHHhCCChHHHHHHH
Q 023462 30 SFDDISKYF-S---LP----LSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 30 TledL~~yF-~---lP----i~EAAr~LGVs~T~LKR~C 60 (282)
.+.+|..+| . +| ..+.|+.||++...+|.-+
T Consensus 11 ~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWF 49 (64)
T 1x2m_A 11 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWF 49 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 588899999 3 45 6889999999999999854
No 441
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=27.81 E-value=47 Score=25.75 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+.+.+.|+.++|+.++|.|...+|
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rL 60 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQL 60 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHH
Confidence 4789999999999999999999877
No 442
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.80 E-value=33 Score=25.55 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.|-.+++.++|++.|||..+|-+.+.
T Consensus 23 G~~~~t~~~Ia~~agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 23 GYHATGLNQIVKESGAPKGSLYHFFP 48 (191)
T ss_dssp CTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred CccccCHHHHHHHHCCCchhHHHHcc
Confidence 56689999999999999999997653
No 443
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.69 E-value=55 Score=25.38 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=8.7
Q ss_pred CCChHHHHHHHHHcCC
Q 023462 50 GVCVSVLKKICRDNGL 65 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI 65 (282)
| ..+++..+|++.||
T Consensus 37 G-~~~s~~~IA~~aGv 51 (215)
T 2hku_A 37 G-EGVPITQICAAAGA 51 (215)
T ss_dssp C-TTSCHHHHHHHHTC
T ss_pred C-CCcCHHHHHHHhCC
Confidence 5 55555555555555
No 444
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=27.62 E-value=33 Score=26.13 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
.|-.+++.++|++.|||..+|-+.+.
T Consensus 24 G~~~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 24 GYDNVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp CGGGCCHHHHHHHTTCCHHHHHHHCS
T ss_pred CccccCHHHHHHHhCCCHHHHHHHcC
Confidence 45567788888888888887776544
No 445
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.48 E-value=20 Score=26.94 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=10.9
Q ss_pred hcCCcHHHHHHHhCCChHHH
Q 023462 37 YFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 37 yF~lPi~EAAr~LGVs~T~L 56 (282)
|-..++.++|++.|||..+|
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~ 45 (183)
T 1zk8_A 26 VQEVTLASLAQTLGVRSPSL 45 (183)
T ss_dssp GGGCCHHHHHHHHTSCHHHH
T ss_pred ccccCHHHHHHHcCCCchHH
Confidence 33455555555555555555
No 446
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=27.47 E-value=23 Score=27.02 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=19.9
Q ss_pred HHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 43 SDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 43 ~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
-+||.+| |+..+++..+|++.||.
T Consensus 20 l~aa~~l~~~~G~~~~ti~~IA~~agvs 47 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGVGLQEILKTSGVP 47 (212)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHhCCC
Confidence 4555554 99999999999999995
No 447
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=27.43 E-value=32 Score=26.29 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=17.4
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|.+.
T Consensus 27 G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 27 GIAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp CTTTCCHHHHHHTTTCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCHHHHHHH
Confidence 445678888888888888777553
No 448
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=27.42 E-value=23 Score=26.65 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=8.7
Q ss_pred CCChHHHHHHHHHcCC
Q 023462 50 GVCVSVLKKICRDNGL 65 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI 65 (282)
|+..+++..+|++.||
T Consensus 28 G~~~~tv~~Ia~~agv 43 (196)
T 3he0_A 28 GFQGLSMQKLANEAGV 43 (196)
T ss_dssp CTTTCCHHHHHHHHTS
T ss_pred CcccCCHHHHHHHhCC
Confidence 5555555555555555
No 449
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=27.42 E-value=53 Score=25.42 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=13.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|- .++.++|++.|||..+|-+
T Consensus 29 G~~-~s~~~IA~~agvs~~tiY~ 50 (224)
T 1t33_A 29 GLH-ATTRDIAALAGQNIAAITY 50 (224)
T ss_dssp GGG-SCHHHHHHHHTSCHHHHHH
T ss_pred Ccc-ccHHHHHHHhCCCHHHHHH
Confidence 344 6666666666666666643
No 450
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.38 E-value=84 Score=22.46 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCcCHHHHHhhcCCcHHHHHHHh-C----CChHHHHHHHHHcCCC
Q 023462 26 TKSLSFDDISKYFSLPLSDAANHL-G----VCVSVLKKICRDNGLD 66 (282)
Q Consensus 26 ~~~iTledL~~yF~lPi~EAAr~L-G----Vs~T~LKR~CR~lGI~ 66 (282)
...+|..+|....+++..-+.+-. | ++..+|.++|+.+|+.
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~ 57 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVS 57 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcC
Confidence 346889999999999988888754 3 5688899999999983
No 451
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=27.38 E-value=41 Score=25.67 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=14.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-.+++.++|++.|||..+|-+
T Consensus 48 G~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 48 GYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCcHHHHHHHhCCCHHHHHH
Confidence 33356666666666666666644
No 452
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.35 E-value=30 Score=26.14 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=14.5
Q ss_pred hhcCCcHHHHHHHhCCChHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~L 56 (282)
.|-.+++.++|++.|||..+|
T Consensus 20 G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 20 GYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHCCHHHHHHHTTCCHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHH
Confidence 445577777777777777776
No 453
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.27 E-value=99 Score=23.04 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=37.1
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++..-+++-. .++..+|.++|+.+||.
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~ 67 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVS 67 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcC
Confidence 45567899999999999999888864 57899999999999985
No 454
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=27.19 E-value=34 Score=26.64 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=21.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-.+.+.++|++.||+..+|.+.+
T Consensus 45 G~~~~tv~~IA~~agvs~~t~Y~~F 69 (215)
T 2qko_A 45 GARGLTFRAVDVEANVPKGTASNYF 69 (215)
T ss_dssp CTTTCCHHHHHHHSSSTTTCHHHHC
T ss_pred ChhhccHHHHHHHcCCCcchHHHhC
Confidence 4557999999999999999988754
No 455
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=27.15 E-value=36 Score=27.14 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=8.7
Q ss_pred CCcHHHHHHHhCCChHHH
Q 023462 39 SLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~L 56 (282)
.+.+.++|++.||+..+|
T Consensus 59 ~~tv~~IA~~AGvs~~tl 76 (214)
T 2guh_A 59 EITLKDIAEDAGVSAPLI 76 (214)
T ss_dssp GCCHHHHHHHHTSCHHHH
T ss_pred hcCHHHHHHHhCCCHHHH
Confidence 344444444444444444
No 456
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.02 E-value=74 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++..-+.+-. .++..+|.++|+.+||.
T Consensus 18 r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~ 64 (114)
T 3op9_A 18 KKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLS 64 (114)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 34456899999999999988888754 47889999999999984
No 457
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=26.98 E-value=29 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=17.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-..++.++|++.|||..+|-+.
T Consensus 35 G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 35 GFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccCCHHHHHHHHCcCHHHHhhh
Confidence 455778888888888888877543
No 458
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=26.94 E-value=37 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=15.0
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 34 G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 34 GFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp CTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHhhh
Confidence 344566666666666666666554
No 459
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.89 E-value=54 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc---C-CCCCC
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN---G-LDRWP 69 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWP 69 (282)
.+++.|.|+.|||+.+++-+.+++| | |.|-|
T Consensus 68 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 68 DQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4789999999999999999988877 5 45554
No 460
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=26.83 E-value=50 Score=28.01 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+.+.|+|+.||++.+++-|+.+.|
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L 45 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINAL 45 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4789999999999999999999866
No 461
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.81 E-value=25 Score=26.45 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 43 SDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 43 ~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 16 l~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 53 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKS 53 (197)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSC
T ss_pred HHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCC
Confidence 4555554 999999999999999952 12444444
No 462
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=26.72 E-value=61 Score=29.34 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=22.2
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHH
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICR 61 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR 61 (282)
-+|.+.|+|..+|||.+++-++-+
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~ 47 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIEN 47 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHC
Confidence 789999999999999999999865
No 463
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.69 E-value=42 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=24.6
Q ss_pred CCc-HHHHHHHhCCChHHHHHHHHHc---CC-CCCCcc
Q 023462 39 SLP-LSDAANHLGVCVSVLKKICRDN---GL-DRWPYR 71 (282)
Q Consensus 39 ~lP-i~EAAr~LGVs~T~LKR~CR~l---GI-~RWPyR 71 (282)
-|| ..+.|+++|||.+|+.+..+.| |+ .|-|.+
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 69 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGV 69 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCc
Confidence 464 8999999999999999988876 53 444544
No 464
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.60 E-value=53 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=13.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 28 Gy~~ts~~~IA~~aGvsk~tlY~ 50 (202)
T 2i10_A 28 GYEGTSITDLTKALGINPPSLYA 50 (202)
T ss_dssp TTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCChHHHHH
Confidence 34455666666666666666543
No 465
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=26.47 E-value=47 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=17.5
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+.+.++|++.|||..+|-+.
T Consensus 40 G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 40 GTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp CGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCHHHHHHH
Confidence 455778888888888887776553
No 466
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=26.40 E-value=51 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=26.6
Q ss_pred cCCcHHHHHHHh-CCChHHHHHHHHHc---C-CCCCCc
Q 023462 38 FSLPLSDAANHL-GVCVSVLKKICRDN---G-LDRWPY 70 (282)
Q Consensus 38 F~lPi~EAAr~L-GVs~T~LKR~CR~l---G-I~RWPy 70 (282)
=.+.+.|.|+.| ||+.++|-++.++| | |.|-++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 368899999999 99999999888876 6 455554
No 467
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=26.37 E-value=43 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHhhcCCcHHHHHHHhCCChHHHHHH
Q 023462 31 FDDISKYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 31 ledL~~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
+..+|.-.+|++.++|+.+ ||.+++-++
T Consensus 10 i~~~R~~~~~tq~~la~~~-~s~~~~s~~ 37 (293)
T 3u3w_A 10 IKKIRVLRGLTQKQLSENI-CHQSEVSRI 37 (293)
T ss_dssp HHHHHHHTTCCHHHHHTTT-SCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHh-CCHHHHHHH
Confidence 4556666677777777777 766665554
No 468
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=26.32 E-value=14 Score=29.50 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc---CCCCCCcchhh
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN---GLDRWPYRKFL 74 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l---GI~RWPyRKlk 74 (282)
+.+++++.|..||++..+|-|+.+++ |+-+.-+++|.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~ 202 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIK 202 (213)
T ss_dssp ----------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEE
Confidence 35779999999999999988887766 66555555554
No 469
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=26.17 E-value=45 Score=25.05 Aligned_cols=24 Identities=17% Similarity=-0.061 Sum_probs=20.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 34 G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 34 GIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp CCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccccHHHHHHHhCCCHHHHHHH
Confidence 566799999999999999998654
No 470
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=26.14 E-value=38 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=12.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-.+++.++|++.||+..+|.+
T Consensus 43 G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 43 TYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHH
T ss_pred CccccCHHHHHHHhCCChhHHHH
Confidence 34455666666666666655543
No 471
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.05 E-value=80 Score=23.66 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=36.9
Q ss_pred CCCCCcCHHHHHhhcCCcHHHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 24 TSTKSLSFDDISKYFSLPLSDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 24 ~~~~~iTledL~~yF~lPi~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
+....+|..+|....+++...+++-. .++..+|.++|+-||+.
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~ 78 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVK 78 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC
Confidence 45567999999999999999888754 47899999999999984
No 472
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=26.03 E-value=29 Score=26.55 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+. +++..+|++.||.+ =-|+-+.+
T Consensus 20 Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 20 ILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHHHHcCC
Confidence 35666655 999 99999999999953 24555555
No 473
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.00 E-value=26 Score=26.77 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=24.4
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.| ==|+-+.+
T Consensus 36 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 36 IIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 45666665 999999999999999953 22444444
No 474
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.95 E-value=71 Score=25.58 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
.+++.+.|+.|||+.+++-+++++|
T Consensus 57 ~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 57 ETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5889999999999999999998877
No 475
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.88 E-value=38 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.2
Q ss_pred CCChHHHHHHHHHcCC
Q 023462 50 GVCVSVLKKICRDNGL 65 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI 65 (282)
|+..+++..+|++.||
T Consensus 28 G~~~~s~~~Ia~~agv 43 (203)
T 3b81_A 28 GYENTTLAFIINKLGI 43 (203)
T ss_dssp CSTTCCHHHHHHHHTC
T ss_pred CcccCcHHHHHHHhCC
Confidence 4555555555555554
No 476
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.86 E-value=26 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 28 G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 28 GYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHT
T ss_pred CcccCcHHHHHHHhCCCchhHHH
Confidence 45589999999999999999864
No 477
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=25.85 E-value=26 Score=26.54 Aligned_cols=22 Identities=5% Similarity=0.136 Sum_probs=13.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LK 57 (282)
.|-..++.++|++.|||..+|-
T Consensus 19 Gy~~~s~~~Ia~~agvskgtlY 40 (179)
T 2eh3_A 19 GYQGTSVEEIVKRANLSKGAFY 40 (179)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHH
T ss_pred CCccCCHHHHHHHhCCCcHHHH
Confidence 3445666666666666666653
No 478
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.82 E-value=40 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ =-|+-+.+
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (183)
T 1zk8_A 13 IVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKG 51 (183)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCC
Confidence 45666666 999999999999999953 23555554
No 479
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.82 E-value=47 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=14.5
Q ss_pred CCChHHHHHHHHHcCC-CCCCcchhhhh
Q 023462 50 GVCVSVLKKICRDNGL-DRWPYRKFLSG 76 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI-~RWPyRKlkSL 76 (282)
|...|++..||++.|| ..=-|+-+.+-
T Consensus 29 G~~~~s~~~IA~~aGvs~~tlY~~F~sK 56 (197)
T 2hyt_A 29 GYADTSMDDLTAQASLTRGALYHHFGDK 56 (197)
T ss_dssp CTTTCCHHHHHHHHTCCTTHHHHHHSSH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 5555555555555555 33345666653
No 480
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=25.74 E-value=38 Score=25.26 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=14.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLK 57 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LK 57 (282)
.|-.+++.++|++.|||..+|.
T Consensus 27 G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 27 GPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHH
T ss_pred CcccCCHHHHHHHhCCcHHHHH
Confidence 3446777777777777777664
No 481
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.66 E-value=29 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 23 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 45666665 999999999999999952 22444444
No 482
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.65 E-value=45 Score=25.80 Aligned_cols=24 Identities=4% Similarity=0.097 Sum_probs=20.9
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|++.|||..+|-+.
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCChHHHHHH
Confidence 556899999999999999999754
No 483
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.56 E-value=39 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=12.1
Q ss_pred hhcCCcHHHHHHHhCCChHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~L 56 (282)
.|-..++.++|++.|||..+|
T Consensus 24 G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 24 GYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp CSTTCCHHHHHHHHTCCHHHH
T ss_pred CcCcCCHHHHHHHhCCCccHH
Confidence 344556666666666666655
No 484
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.50 E-value=52 Score=26.07 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKIC 60 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~C 60 (282)
.|-.+.+.++|++.||+..+|-+.+
T Consensus 57 G~~~~t~~~IA~~Agvs~~t~Y~~F 81 (225)
T 2id3_A 57 GFDALDLGEIARRAGVGKTTVYRRW 81 (225)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHHCCCHHHHHHHC
Confidence 4557888888888888888876643
No 485
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=25.43 E-value=24 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=19.7
Q ss_pred HHHHHHh----CCChHHHHHHHHHcCCC
Q 023462 43 SDAANHL----GVCVSVLKKICRDNGLD 66 (282)
Q Consensus 43 ~EAAr~L----GVs~T~LKR~CR~lGI~ 66 (282)
-+||.+| |+..+++..+|++.||.
T Consensus 23 l~aa~~lf~~~G~~~~ti~~Ia~~agvs 50 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAAMTMEGVASEAGIA 50 (208)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCHHhccHHHHHHHhCCC
Confidence 4555544 99999999999999995
No 486
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=25.42 E-value=40 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=17.4
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-..++.++|++.|||..+|-+.
T Consensus 20 G~~~~s~~~IA~~Agvs~~t~Y~~ 43 (212)
T 3rh2_A 20 GERTITTNHIAAHLDISPGNLYYH 43 (212)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHH
Confidence 445677888888888888777654
No 487
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=25.24 E-value=15 Score=28.48 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHhCCChHHHHHHHHHc
Q 023462 38 FSLPLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 38 F~lPi~EAAr~LGVs~T~LKR~CR~l 63 (282)
..+|+++.|..|||+..+|-|+-+++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp --------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 46789999999999999999987765
No 488
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.22 E-value=27 Score=26.23 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=23.8
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 12 Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 50 (199)
T 3qbm_A 12 VVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFES 50 (199)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCC
Confidence 34555554 999999999999999952 22444444
No 489
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=25.17 E-value=49 Score=24.98 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |...|++..+|++.||.+ =-|+-+.|
T Consensus 7 Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~s 45 (179)
T 2eh3_A 7 ILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKS 45 (179)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcCC
Confidence 45677666 999999999999999953 23444444
No 490
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.14 E-value=52 Score=25.18 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=14.6
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|.+
T Consensus 28 G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 28 GLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp CSSSCCHHHHHHHHTCCHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHH
Confidence 34456677777777777766644
No 491
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=25.13 E-value=30 Score=26.44 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=24.6
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC-CCcchhhh
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR-WPYRKFLS 75 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R-WPyRKlkS 75 (282)
|-+||.+| |+..+++..+|++.||.+ ==|+-+.+
T Consensus 22 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 22 ISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 35666665 999999999999999953 22444444
No 492
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=24.90 E-value=47 Score=25.85 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=13.1
Q ss_pred CCChHHHHHHHHHcCCC-CCCcchhhh
Q 023462 50 GVCVSVLKKICRDNGLD-RWPYRKFLS 75 (282)
Q Consensus 50 GVs~T~LKR~CR~lGI~-RWPyRKlkS 75 (282)
|+..+++..+|++.||. .=+|+-+.+
T Consensus 29 G~~~~s~~~IA~~agvs~~t~Y~hF~~ 55 (198)
T 3cjd_A 29 GLASLRARELARQADCAVGAIYTHFQD 55 (198)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred ChhhcCHHHHHHHhCCCccHHHHHhCC
Confidence 55555555555555552 233555554
No 493
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=24.86 E-value=32 Score=26.39 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R 67 (282)
|-+||.+| |...|++..||++.||.+
T Consensus 12 Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 12 ILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHhCcCH
No 494
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=24.81 E-value=49 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.2
Q ss_pred hhcCCcHHHHHHHhCCChHHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKKI 59 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR~ 59 (282)
.|-.+++.++|+++||+..+|.+.
T Consensus 19 G~~~~s~~~IA~~aGvs~~tlY~h 42 (209)
T 3bqy_A 19 GLDTLTMRRLAQAMDVQAGALYRY 42 (209)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHhh
Confidence 556788888888888888888764
No 495
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=24.80 E-value=39 Score=29.09 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.7
Q ss_pred CcHHHHHHHhCCChHHHHHHHHHc---C-CCCCCc
Q 023462 40 LPLSDAANHLGVCVSVLKKICRDN---G-LDRWPY 70 (282)
Q Consensus 40 lPi~EAAr~LGVs~T~LKR~CR~l---G-I~RWPy 70 (282)
+.+.|+|+.||++.+++-|+.+.| | |.+-|.
T Consensus 22 lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~ 56 (260)
T 3r4k_A 22 IGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEG 56 (260)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 679999999999999999999866 6 355564
No 496
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=24.72 E-value=30 Score=26.75 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R 67 (282)
|-+||.+| |+..|++..||++.||.+
T Consensus 19 Il~aA~~lf~~~G~~~~s~~~IA~~agvs~ 48 (204)
T 2ibd_A 19 LLDIAATLFAERGLRATTVRDIADAAGILS 48 (204)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHcCchhcCHHHHHHHhCCCc
No 497
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=24.65 E-value=42 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred hhcCCcHHHHHHHhCCChHHHHH
Q 023462 36 KYFSLPLSDAANHLGVCVSVLKK 58 (282)
Q Consensus 36 ~yF~lPi~EAAr~LGVs~T~LKR 58 (282)
.|-..++.++|++.|||..+|-+
T Consensus 28 G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 28 GFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHT
T ss_pred CcccCCHHHHHHHhCCCcchHHH
Confidence 56689999999999999999864
No 498
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=24.43 E-value=40 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=15.7
Q ss_pred CCCCCcCHHHHH----------hhcCCcHHHHHHHhCCChHHH
Q 023462 24 TSTKSLSFDDIS----------KYFSLPLSDAANHLGVCVSVL 56 (282)
Q Consensus 24 ~~~~~iTledL~----------~yF~lPi~EAAr~LGVs~T~L 56 (282)
+....++.+.|- .|-.+++.++|+++||+..+|
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 53 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAI 53 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGG
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHH
Confidence 334456666653 333555666666666655544
No 499
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=24.35 E-value=50 Score=28.89 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.1
Q ss_pred CC-cHHHHHHHhCCChHHHHHHHHHc
Q 023462 39 SL-PLSDAANHLGVCVSVLKKICRDN 63 (282)
Q Consensus 39 ~l-Pi~EAAr~LGVs~T~LKR~CR~l 63 (282)
-| +..+.|+++|||.+|+.+...+|
T Consensus 52 ~lPse~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 52 RLPSQARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46 48999999999999998877765
No 500
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=24.32 E-value=38 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHh----CCChHHHHHHHHHcCCCC
Q 023462 42 LSDAANHL----GVCVSVLKKICRDNGLDR 67 (282)
Q Consensus 42 i~EAAr~L----GVs~T~LKR~CR~lGI~R 67 (282)
|-+||.+| |+..|++..||++.||.+
T Consensus 16 Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2xdn_A 16 IIEAAERAFYKRGVARTTLADIAELAGVTR 45 (210)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHcCcccCcHHHHHHHHCCCh
Done!