BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023463
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 346 bits (888), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 221/286 (77%), Gaps = 17/286 (5%)
Query: 2 THDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSA 61
THDPEILTPEEHFY+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+
Sbjct: 171 THDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTP 230
Query: 62 EEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKY 121
+EVKEIA ELARLTGGIVL++HE NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK
Sbjct: 231 DEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKC 290
Query: 122 RDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMEC 179
RD LRAV+KYIP+LEQEL+LL+AQAET+ + + +D Q + EL K S + +
Sbjct: 291 RDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDE 350
Query: 180 SENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEE 239
E D L A+DS DLSDIFETDSE E + K E RPL+L++F+KFP N+ E EDF
Sbjct: 351 QEEDEAGLEL-ATDS-DLSDIFETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG- 405
Query: 240 HLRQISIDSRNAKSLGKDED---SSHFDEVDKMFLRAASLLKKQKR 282
D AKS G++ D S +FDEVDKMFLRAA LLKK++R
Sbjct: 406 -------DLGKAKSEGEENDDDKSPNFDEVDKMFLRAAFLLKKKRR 444
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 4 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 63
D E LT EE F ++GRK V +GRRGI+ GVI +H HWK + +KVI K +
Sbjct: 560 DREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 64 VKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 119
+ A+ L TGGI++ + + T II+YRGKNY +P S L++++AL +S
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 8 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 66
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 67 IAAELARLTGGIVLEIHEENTIIMYRGKNY 96
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 4 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 63
D E+LT EE F K+G K +V +GRRG+++GVI +H HWK + +KVI K A +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621
Query: 64 VKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 119
+ + L TGG ++ I T II+YRGKNY +P +P L++++AL +S
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 8 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 66
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 67 IAAELARLTGGIVLEIHEENTIIMYRGKNY 96
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 4 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 63
D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627
Query: 64 VKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 120
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KAL +S
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKALQRSV 686
Query: 121 YRDGLRAVKKYIPKLEQELELLRA 144
L ++K + + E+ +E L+
Sbjct: 687 VMQRLGSLKFFAYQRERAIEDLKV 710
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 8 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 66
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 67 IAAELARLTGGIVLEIHEENTIIMYRGKNY 96
+A EL LTGG+++ + + I++YRGK++
Sbjct: 421 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 449
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 6 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 65
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 66 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 96
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 5 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 64
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 65 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 102
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 6 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 65
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 66 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 96
I +L GG V IH + +I ++RG+NY
Sbjct: 243 NICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1 MTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS 60
+T P LTP+E G + +G+ G+Y ++ + ++ ++V +
Sbjct: 296 VTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLN 355
Query: 61 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 102
+ ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 356 KSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 6 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 63
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 64 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 96
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 23 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 82
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 83 HEENTIIMYRGKNY 96
N +I+YRG+NY
Sbjct: 221 RNINILILYRGRNY 234
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 6 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 65
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 66 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 96
+ L +GG V IH ++ +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 29 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 88
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 308
Query: 89 I-MYRGKNY 96
+ +YRG+NY
Sbjct: 309 VFLYRGRNY 317
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 23 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 82
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 160 CTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-Y 218
Query: 83 HEENTIIMYRGKNY 96
N +++YRG+NY
Sbjct: 219 RNINILVLYRGRNY 232
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 22 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 81
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 82 IHEENTIIMYRGKNY 96
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 6 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 65
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 66 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 96
+ +L GG V+ + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 5 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 64
PE LT +E + GR+ +G+ G+Y ++ N+ ++ + +++ + +
Sbjct: 358 PEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDF 417
Query: 65 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY 96
++I A+L L +++ E I+++RG+ +
Sbjct: 418 RKIGAKLKDLVPCVLVSFENEQ-ILIWRGREW 448
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 27 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 86
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRVG 279
Query: 87 TII-MYRGKNY 96
++ ++RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>sp|P13635|CERU_RAT Ceruloplasmin OS=Rattus norvegicus GN=Cp PE=1 SV=3
Length = 1059
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 11/166 (6%)
Query: 94 KNYAQPPTEIMSPRITLSRKK--ALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSE 151
KN+A P + +T ++ A+ D RA K P +Q L +LRA + E
Sbjct: 110 KNFASRPYTFHAHGVTYTKANEGAIYPDNTTDFQRADDKLFPG-QQYLYVLRANEPSPGE 168
Query: 152 NRSDAAEDVQNTELDKPD---FGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETE 208
S+ + ++ +D P G I ++ C + SL E++ F
Sbjct: 169 GDSNCVTRIYHSHVDAPKDIASGLIGPLILCKKG-----SLHKEKEENIDQEFVLMFSVV 223
Query: 209 TEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSL 254
E + + F P + D+++EDF+E R SI+ SL
Sbjct: 224 DENLSWYLEDNIKTFCSEPEKVDKDNEDFQESNRMYSINGYTFGSL 269
>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP95 PE=1 SV=1
Length = 861
Score = 31.6 bits (70), Expect = 7.4, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 160 VQNTELDKPDFGSIPSMME----CSENDPTTESLMASDSEDLSDIFETDSETETEEKAEL 215
V NT ++P+ S++ C DP +++L++S + L I + TET + L
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 216 RPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSL 254
L ++N+ E E +L Q+ ++ A+ +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI 238
>sp|Q94A41|AMY3_ARATH Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=1
SV=1
Length = 887
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 31/122 (25%)
Query: 78 IVLEIHEENTIIMYRGKNYAQP-------PTEIMSPRITLSRKK---------------- 114
VL+++E NT + YRG+++ P P E + +++ ++K
Sbjct: 364 FVLKLNE-NTWLNYRGEDFYVPFLTSSSSPVETEAAQVSKPKRKTDKEVSASGFTKEIIT 422
Query: 115 -----ALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET--RSENRSDAAEDVQNTELDK 167
A+D S +++ VK+ + QE+E L A+A + RS + + E V E DK
Sbjct: 423 EIRNLAIDISSHKNQKTNVKEVQENILQEIEKLAAEAYSIFRSTTPAFSEEGVLEAEADK 482
Query: 168 PD 169
PD
Sbjct: 483 PD 484
>sp|Q9PMZ6|FABHL_CAMJE Putative 3-oxoacyl-[acyl-carrier-protein] synthase 3
OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=Cj1303 PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 198 SDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 250
+DIF DS +TEE +L LY+D + F + + E + F+E L +D ++
Sbjct: 209 ADIFNDDSLMQTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKD 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,453,419
Number of Sequences: 539616
Number of extensions: 4381019
Number of successful extensions: 18003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 17183
Number of HSP's gapped (non-prelim): 1052
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)