Query 023463
Match_columns 282
No_of_seqs 191 out of 736
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 5.1E-31 1.7E-35 213.1 13.9 88 7-95 1-88 (104)
2 1jo0_A Hypothetical protein HI 100.0 1E-30 3.4E-35 208.9 13.3 89 7-96 2-90 (98)
3 3ka5_A Ribosome-associated pro 52.1 29 0.00099 25.6 5.3 47 50-97 1-50 (65)
4 3sbx_A Putative uncharacterize 40.8 29 0.00099 29.9 4.4 37 15-52 130-166 (189)
5 2bky_A DNA/RNA-binding protein 38.4 1.4E+02 0.0047 23.2 7.8 66 24-90 9-78 (97)
6 3k2t_A LMO2511 protein; lister 36.9 28 0.00095 24.9 3.1 46 51-97 2-50 (57)
7 2h9u_A DNA/RNA-binding protein 36.2 1.4E+02 0.0047 23.5 7.3 67 24-90 6-75 (102)
8 1uii_A Geminin; human, DNA rep 34.0 72 0.0025 24.8 5.2 33 111-143 36-73 (83)
9 3p04_A Uncharacterized BCR; SE 31.9 1.7E+02 0.0059 22.4 7.9 56 40-97 19-77 (87)
10 3lyv_A Ribosome-associated fac 31.9 33 0.0011 25.4 2.9 47 50-97 2-51 (66)
11 3c1y_A DNA integrity scanning 31.8 79 0.0027 30.3 6.2 33 61-93 125-158 (377)
12 1nbw_B Glycerol dehydratase re 30.8 1.5E+02 0.005 24.0 6.8 76 23-99 4-84 (117)
13 2lw1_A ABC transporter ATP-bin 29.2 85 0.0029 23.5 4.9 31 122-152 21-51 (89)
14 3pp5_A BRK1, protein brick1; t 28.8 78 0.0027 24.0 4.5 31 119-149 41-71 (73)
15 3p8c_E Probable protein brick1 28.6 74 0.0025 24.2 4.4 31 119-149 41-71 (75)
16 3qua_A Putative uncharacterize 27.9 61 0.0021 28.0 4.4 37 15-52 139-175 (199)
17 3n70_A Transport activator; si 27.8 1.1E+02 0.0038 23.4 5.5 65 13-80 14-81 (145)
18 2pnv_A Small conductance calci 27.0 77 0.0026 21.7 3.9 25 123-147 16-40 (43)
19 2wvr_A Geminin; DNA replicatio 25.3 1.2E+02 0.0041 27.1 5.8 35 111-145 105-144 (209)
20 1nfj_A ALBA, conserved hypothe 23.8 2.3E+02 0.0079 21.5 6.5 64 25-89 4-70 (89)
21 1gd2_E Transcription factor PA 22.0 1.9E+02 0.0064 21.4 5.5 37 110-146 9-45 (70)
22 3toe_A MTH10B, DNA/RNA-binding 21.5 2.9E+02 0.0098 21.4 7.6 66 24-89 4-71 (91)
23 2a33_A Hypothetical protein; s 21.3 94 0.0032 27.0 4.3 32 15-46 131-162 (215)
24 1ydh_A AT5G11950; structural g 21.3 75 0.0026 27.7 3.7 54 15-73 127-186 (216)
25 3lup_A DEGV family protein; PS 21.3 4.3E+02 0.015 23.4 9.7 59 18-77 184-256 (285)
26 1t35_A Hypothetical protein YV 20.8 45 0.0015 28.3 2.1 34 16-50 120-153 (191)
27 1wfw_A Kalirin-9A; SH3 domain, 20.6 65 0.0022 24.6 2.7 36 75-110 27-65 (74)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.97 E-value=5.1e-31 Score=213.07 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEeeCc
Q 023463 7 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 86 (282)
Q Consensus 7 ~LT~kQRk~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~TGgeLVqV~IG~ 86 (282)
|||++||++||++||+|+|+|+|||+|||++|+++|+.+|++||||||+|.++++++++++|++||+.|||++|| +||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq-~IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQ-VIGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEE-EETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE-EECC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEeCCC
Q 023463 87 TIIMYRGKN 95 (282)
Q Consensus 87 tIILYRgkn 95 (282)
++||||++.
T Consensus 80 ~~VLYR~~~ 88 (104)
T 1rq8_A 80 MIVIYRESK 88 (104)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999986
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.97 E-value=1e-30 Score=208.93 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEeeCc
Q 023463 7 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 86 (282)
Q Consensus 7 ~LT~kQRk~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~TGgeLVqV~IG~ 86 (282)
.||++||++||++||+|+|+|+|||+|||++|+++|+.||++||||||+|.++++++++++|++|++.|||++|| +||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq-~IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQ-TIGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEE-EETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEE-EECC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEeCCCC
Q 023463 87 TIIMYRGKNY 96 (282)
Q Consensus 87 tIILYRgknY 96 (282)
++||||++..
T Consensus 81 ~~vLyR~~~~ 90 (98)
T 1jo0_A 81 ILVLYRPSEE 90 (98)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEccCCC
Confidence 9999998743
No 3
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=52.06 E-value=29 Score=25.65 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.6
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEe---eCcEEEEEeCCCCC
Q 023463 50 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 97 (282)
Q Consensus 50 ELVKVKv~~~~~ed~keiAeeLe~~TGgeLVqV~---IG~tIILYRgknY~ 97 (282)
++|+.|.-.-.+..+.+++.+++-.-.--+| ++ -|.+-|+||+++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~v-F~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFV-FQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEE-EEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEE-EEeCCCCCEEEEEEeCCCC
Confidence 4677777777778899999999875444444 43 48999999988654
No 4
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=40.81 E-value=29 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCCee
Q 023463 15 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 52 (282)
Q Consensus 15 ~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELV 52 (282)
-+.++|.+-||++.+|.+|.++.++.-++ ++-....|
T Consensus 130 t~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gfi 166 (189)
T 3sbx_A 130 TEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTGYV 166 (189)
T ss_dssp HHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTTSS
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCCCC
Confidence 45677888899999999999999999886 55544433
No 5
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=38.39 E-value=1.4e+02 Score=23.20 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=48.2
Q ss_pred CCeeeecCCCCCHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHhCC--e-EEEEeeCcEEEE
Q 023463 24 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLTGG--I-VLEIHEENTIIM 90 (282)
Q Consensus 24 KPvV~IGK~GVTdgVIeeI~~aLk~-HELVKVKv~~~~~ed~keiAeeLe~~TGg--e-LVqV~IG~tIIL 90 (282)
...|.||+.|+..=|...+ ..|.. +.=|.|+-.+..-...=.+|+.|.+...+ . +..+.+|...+-
T Consensus 9 ~n~I~V~~k~v~~YV~~a~-~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~ 78 (97)
T 2bky_A 9 SNVVLIGKKPVMNYVLAAL-TLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVT 78 (97)
T ss_dssp CCEEECCSSCHHHHHHHHH-HHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCcCHHHHHHHHH-HHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEe
Confidence 4789999999765555555 45554 77888888888777788899999998855 4 344567777653
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=36.91 E-value=28 Score=24.95 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEe---eCcEEEEEeCCCCC
Q 023463 51 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 97 (282)
Q Consensus 51 LVKVKv~~~~~ed~keiAeeLe~~TGgeLVqV~---IG~tIILYRgknY~ 97 (282)
+|+.|-..-.+..+.+++.+++-.-.--+| ++ -|.+-|+||+++..
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCCC
Confidence 445554445566788899988876555444 43 48999999988653
No 7
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=36.24 E-value=1.4e+02 Score=23.47 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCeeeecCCCCCHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCeEEE-EeeCcEEEE
Q 023463 24 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLE-IHEENTIIM 90 (282)
Q Consensus 24 KPvV~IGK~GVTdgVIeeI~~aLk~-HELVKVKv~~~~~ed~keiAeeLe~~T-GgeLVq-V~IG~tIIL 90 (282)
...|.||+.|+..-|...+...|.. +.=|.|+-.+..-...=.+|+.|.+.. +|.-|| +.+|...|-
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~ 75 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIE 75 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEe
Confidence 4789999999988888888556654 677888888887777888999999998 575534 357776654
No 8
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.05 E-value=72 Score=24.78 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=20.8
Q ss_pred chHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHH
Q 023463 111 SRKKALDKSKYR-----DGLRAVKKYIPKLEQELELLR 143 (282)
Q Consensus 111 sKrkAL~rs~~~-----qr~~sl~~~i~~~e~~i~~l~ 143 (282)
.||+||.-++.. +++++|.--|..+.++.+.|+
T Consensus 36 ~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 36 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999865 444555555555555555544
No 9
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=31.91 E-value=1.7e+02 Score=22.38 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHH---HhCCeEEEEeeCcEEEEEeCCCCC
Q 023463 40 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYA 97 (282)
Q Consensus 40 eeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~---~TGgeLVqV~IG~tIILYRgknY~ 97 (282)
.+|-++|+....|-|.+..-..++.+.+...++- ..+|.+.. +|..+.|+=|+|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeE
Confidence 5788999999999999999999999988888776 56898884 79999999888764
No 10
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=31.86 E-value=33 Score=25.35 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.3
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEe---eCcEEEEEeCCCCC
Q 023463 50 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 97 (282)
Q Consensus 50 ELVKVKv~~~~~ed~keiAeeLe~~TGgeLVqV~---IG~tIILYRgknY~ 97 (282)
++|+.|.-.-.+..+.+++.+++-. |-.+.-++ -|.+-|+||+++..
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~-gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELL-GHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTT-TCSEEEEEETTTCSEEEEEECTTSS
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcC-CCcEEEEEeCCCCCEEEEEEECCCC
Confidence 3455555555677888999988875 44444243 48999999988654
No 11
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=31.85 E-value=79 Score=30.34 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEe-eCcEEEEEeC
Q 023463 61 AEEVKEIAAELARLTGGIVLEIH-EENTIIMYRG 93 (282)
Q Consensus 61 ~ed~keiAeeLe~~TGgeLVqV~-IG~tIILYRg 93 (282)
...+..+|.-+++.|+|.+|-|. ...+|-+|++
T Consensus 125 lGtRHRAA~gise~tdaivIvVSEetG~Isl~~~ 158 (377)
T 3c1y_A 125 TGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYK 158 (377)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSCCCEEEECS
T ss_pred CcHHHHHHHHHHHhcCCEEEEEEccCCcEEEEEC
Confidence 45789999999999999999663 3445555554
No 12
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=30.76 E-value=1.5e+02 Score=23.98 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCCeeeecC--CCCCHHHHHHHHHHHHhCCeeeEEecCCCH-HHHHHHHHHHHHHhCCeE-EEE-eeCcEEEEEeCCCCC
Q 023463 23 CKNYVPVGR--RGIYQGVILNMHLHWKKHQTLKVIVKTFSA-EEVKEIAAELARLTGGIV-LEI-HEENTIIMYRGKNYA 97 (282)
Q Consensus 23 LKPvV~IGK--~GVTdgVIeeI~~aLk~HELVKVKv~~~~~-ed~keiAeeLe~~TGgeL-VqV-~IG~tIILYRgknY~ 97 (282)
-+|.|.|.- ++....++.+|-.-++-..+ ...+..... .++..+|..-+..|+--| |.+ ..|.++|=||.=+..
T Consensus 4 ~~PaI~i~~~~~~~~~~~l~~vl~GIEEEGi-p~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~L~~~ 82 (117)
T 1nbw_B 4 SPPGVRLFYDPRGHHAGAINELCWGLEEQGV-PCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPAD 82 (117)
T ss_dssp -CCCEEEEECTTSCCHHHHHHHHHHHHHTTC-CEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETTSCTT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHhhhhhcCC-CeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCCCCCC
Confidence 367777776 66778899998888887664 333433322 577888888888776432 222 356788888864544
Q ss_pred CC
Q 023463 98 QP 99 (282)
Q Consensus 98 ~P 99 (282)
+|
T Consensus 83 ~p 84 (117)
T 1nbw_B 83 AP 84 (117)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 13
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.18 E-value=85 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 023463 122 RDGLRAVKKYIPKLEQELELLRAQAETRSEN 152 (282)
Q Consensus 122 ~qr~~sl~~~i~~~e~~i~~l~~~~~~~~~~ 152 (282)
...++.|-.-|..||.+|..|..+|....-+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y 51 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFF 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 3457889999999999999999999887544
No 14
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=28.81 E-value=78 Score=24.00 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023463 119 SKYRDGLRAVKKYIPKLEQELELLRAQAETR 149 (282)
Q Consensus 119 s~~~qr~~sl~~~i~~~e~~i~~l~~~~~~~ 149 (282)
+.++.++..|..-+..+|..|+.|.+++.+.
T Consensus 41 ~sce~KLa~ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 41 LSTRNKLSDLNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4588899999999999999999999998764
No 15
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.60 E-value=74 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023463 119 SKYRDGLRAVKKYIPKLEQELELLRAQAETR 149 (282)
Q Consensus 119 s~~~qr~~sl~~~i~~~e~~i~~l~~~~~~~ 149 (282)
+.++.|+..|..-+..+|..|+.|.+++.+.
T Consensus 41 ~sce~KLa~ln~KL~~LEr~L~iLEAklss~ 71 (75)
T 3p8c_E 41 MSCRSRLATLNEKLTALERRIEYIEARVTKG 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4588999999999999999999999998764
No 16
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=27.87 E-value=61 Score=28.04 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=29.5
Q ss_pred HHHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCCee
Q 023463 15 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 52 (282)
Q Consensus 15 ~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELV 52 (282)
.+.++|.+-||++.+|.+|.++.++.-++ ++-....|
T Consensus 139 t~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gfi 175 (199)
T 3qua_A 139 TAGYLGMHDKPLILLDPFGHYDGLLTWLR-GLVPTGYV 175 (199)
T ss_dssp HHHHTTSCCCCEEEECTTSTTHHHHHHHH-HTTTTTSS
T ss_pred HHHHhccCCCCEEEEcCCccchHHHHHHH-HHHHCCCC
Confidence 45677888899999999999999999886 55544443
No 17
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=27.77 E-value=1.1e+02 Score=23.36 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=41.3
Q ss_pred HHHHHhcccCCCCeeeecCCCCCHHHHH-HHHHHHH--hCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEE
Q 023463 13 HFYFLKMGRKCKNYVPVGRRGIYQGVIL-NMHLHWK--KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL 80 (282)
Q Consensus 13 Rk~LRklAhkLKPvV~IGK~GVTdgVIe-eI~~aLk--~HELVKVKv~~~~~ed~keiAeeLe~~TGgeLV 80 (282)
+..++..+..-.|++..|..|.--..+. .||.+.. ...+| |.|...... ......++...||.++
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQGGTLV 81 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHTTSCEE
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcCCcEEE
Confidence 3455666778889999999999988765 4554432 45788 988653321 2233445555565554
No 18
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.96 E-value=77 Score=21.68 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 023463 123 DGLRAVKKYIPKLEQELELLRAQAE 147 (282)
Q Consensus 123 qr~~sl~~~i~~~e~~i~~l~~~~~ 147 (282)
-|.+.|...|..||.+++.|...+.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999998875
No 19
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.28 E-value=1.2e+02 Score=27.13 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=24.9
Q ss_pred chHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHHHH
Q 023463 111 SRKKALDKSKYR-----DGLRAVKKYIPKLEQELELLRAQ 145 (282)
Q Consensus 111 sKrkAL~rs~~~-----qr~~sl~~~i~~~e~~i~~l~~~ 145 (282)
.||+||.-++.. ++++++.--|..|.++++.|+.-
T Consensus 105 ~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 105 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999954 55666666666776666666653
No 20
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=23.79 E-value=2.3e+02 Score=21.49 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=47.0
Q ss_pred CeeeecCCCCCHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCeE-EEEeeCcEEE
Q 023463 25 NYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIV-LEIHEENTII 89 (282)
Q Consensus 25 PvV~IGK~GVTdgVIeeI~~aLk~-HELVKVKv~~~~~ed~keiAeeLe~~T-GgeL-VqV~IG~tII 89 (282)
..|.||+.|+..-|...+.. |.. +.=|.|+-.+..-...=.+|+.|.... .|.- ..+.+|...+
T Consensus 4 n~I~V~~k~v~~yV~~~~~~-l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i 70 (89)
T 1nfj_A 4 HVVYVGNKPVMNYVLATLTQ-LNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEEL 70 (89)
T ss_dssp EEEECCSSCHHHHHHHHHHH-HHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEC
T ss_pred CEEEEcCCCHHHHHHHHHHH-HhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEE
Confidence 57899999988666666655 554 778888888887777888999999988 5543 3345665543
No 21
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.03 E-value=1.9e+02 Score=21.38 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=29.1
Q ss_pred cchHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023463 110 LSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 146 (282)
Q Consensus 110 LsKrkAL~rs~~~qr~~sl~~~i~~~e~~i~~l~~~~ 146 (282)
.+||+|-.|+--.--++-=..||..||..+..|....
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELH 45 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998888766556666789999999998887643
No 22
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.49 E-value=2.9e+02 Score=21.42 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=47.9
Q ss_pred CCeeeecCCCCCHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCC--eEEEEeeCcEEE
Q 023463 24 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG--IVLEIHEENTII 89 (282)
Q Consensus 24 KPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~TGg--eLVqV~IG~tII 89 (282)
..+|.||+..+..=|+..+.+-=+.+.-|.|+-.+..-...=.+|+.|..+... .+..+.||...+
T Consensus 4 ~~vv~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~ 71 (91)
T 3toe_A 4 ENVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEI 71 (91)
T ss_dssp -CCEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEE
T ss_pred cCEEEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEe
Confidence 468999999999999999876334577888888887777777889999877653 333344555443
No 23
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=21.34 E-value=94 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHhcccCCCCeeeecCCCCCHHHHHHHHHHH
Q 023463 15 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHW 46 (282)
Q Consensus 15 ~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aL 46 (282)
.+.++|.+-||++.+|.+|.++.++.-++...
T Consensus 131 t~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~ 162 (215)
T 2a33_A 131 TWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV 162 (215)
T ss_dssp HHHHTTSCCCCEEEECGGGTTHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEecCcchhHHHHHHHHHHH
Confidence 46778888999999999999999998885443
No 24
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=21.32 E-value=75 Score=27.67 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCCeee------EEecCCCHHHHHHHHHHHHH
Q 023463 15 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLK------VIVKTFSAEEVKEIAAELAR 73 (282)
Q Consensus 15 ~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELVK------VKv~~~~~ed~keiAeeLe~ 73 (282)
.+..+|.+-+|++.+|.+|.++.++.-++ ++-....|. |.+.. +.+++.+.|+.
T Consensus 127 t~~qlg~~~kPvvll~~~gfw~~l~~~l~-~~~~~Gfi~~~~~~~~~~~d----~~ee~~~~l~~ 186 (216)
T 1ydh_A 127 TWSQLGIHKKTVGLLNVDGYYNNLLALFD-TGVEEGFIKPGARNIVVSAP----TAKELMEKMEE 186 (216)
T ss_dssp HHHHHTSCCCEEEEECGGGTTHHHHHHHH-HHHHTTSSCHHHHTTEEEES----SHHHHHHHHHH
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCCCCChHHcCeEEEeC----CHHHHHHHHHH
Confidence 35667788999999999999999999886 444444332 33333 24555666654
No 25
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=21.32 E-value=4.3e+02 Score=23.40 Aligned_cols=59 Identities=7% Similarity=-0.002 Sum_probs=39.9
Q ss_pred hcccCCCCeeeecCCCC-------------CHHHHHHHHHHHHhCCeeeEEe-cCCCHHHHHHHHHHHHHHhCC
Q 023463 18 KMGRKCKNYVPVGRRGI-------------YQGVILNMHLHWKKHQTLKVIV-KTFSAEEVKEIAAELARLTGG 77 (282)
Q Consensus 18 klAhkLKPvV~IGK~GV-------------TdgVIeeI~~aLk~HELVKVKv-~~~~~ed~keiAeeLe~~TGg 77 (282)
+-.+++||++.+-.+|. ...+++.+........ .+|-+ ..++.+...++.+.|.+..+.
T Consensus 184 g~lL~IKPIl~~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~~~~-~~v~i~h~~~~e~a~~l~~~l~~~~~~ 256 (285)
T 3lup_A 184 GNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGE-YDIAIIHSRAQDKAEQLYNLLAKAGLK 256 (285)
T ss_dssp HHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSC-EEEEEEESSCHHHHHHHHHHHHHTTCG
T ss_pred HHhhCcEEEEEEccCceEEEeeecCCHHHHHHHHHHHHHHhhcCCC-cEEEEEeCCCHHHHHHHHHHHHhhCCC
Confidence 44578999999965563 2345555555544433 45554 567888899999999887654
No 26
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=20.76 E-value=45 Score=28.30 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHhcccCCCCeeeecCCCCCHHHHHHHHHHHHhCC
Q 023463 16 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 50 (282)
Q Consensus 16 LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HE 50 (282)
+.++|.+-||++.+|.+|.++.++.-++ ++-...
T Consensus 120 ~~q~g~~~kPvvll~~~g~~~~l~~~l~-~~~~~G 153 (191)
T 1t35_A 120 WAQIGIHQKPIGLYNVNGYFEPMMKMVK-YSIQEG 153 (191)
T ss_dssp TTSCSSCCCCEEEECGGGTTHHHHHHHH-HHHHTT
T ss_pred HHHhCCCCCCEEEecCCcccchHHHHHH-HHHHCC
Confidence 3456667799999999999999998885 555443
No 27
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=20.62 E-value=65 Score=24.58 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred hCCeEEEEe-e--CcEEEEEeCCCCCCCCCccCCccccc
Q 023463 75 TGGIVLEIH-E--ENTIIMYRGKNYAQPPTEIMSPRITL 110 (282)
Q Consensus 75 TGgeLVqV~-I--G~tIILYRgknY~~P~~~i~~P~~lL 110 (282)
..|++|||. . =+..++||..+.+-|+.+-++|-..|
T Consensus 27 ~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vL 65 (74)
T 1wfw_A 27 SQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65 (74)
T ss_dssp CTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred ccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEe
Confidence 467889862 2 35899999999999988888887665
Done!