BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023466
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
Length = 427
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 8/177 (4%)
Query: 102 DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLR-VLDSSAAL 160
DK+ Q+ E+I + P + I V+ I P ++ + E + +
Sbjct: 237 DKIWQKSCTVFERIRANL--NPPLYSMIFAVVVAAIGPLQRELFMEDGFINNTFAEAVTQ 294
Query: 161 VGEAAIPAMTLVIGANLLSG---LKRSGVGVSLIMGIIAIRYILLP--LLGIVIVKAAYR 215
+G +IP + +V+G+NL ++ L++G I R IL LL I+ + Y
Sbjct: 295 LGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMILPSCFLLPIIAIAVKYI 354
Query: 216 FGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTL 272
I D ++ + L PPA+ + I QL E E+E + IL W YAV + +++
Sbjct: 355 NVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVLSLPVSI 411
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 118/274 (43%), Gaps = 26/274 (9%)
Query: 14 LVFWPQVGAIYIWTYVYYVM--------SLYL-NKSVSDAGTNKDSRIHIISSGESSTNI 64
L+ + Q+G W+Y Y ++ L + N+S S + N++ ++++S + +
Sbjct: 162 LLIFSQLGQALRWSYGYRILLSPNQPEDPLPIGNRSWSHSDVNEEEIQNLLASSANVDGV 221
Query: 65 --FLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFA 122
++++ + + + +Q ET + +I+KF + L F+
Sbjct: 222 QNSVQANEGSTVQTDSSAISKNDNVQVET--SNEEVGGFGAASSKISKFI--VLLLDFFS 277
Query: 123 PSTIAAIIGFVIGTISPFRKVIVGESAPLR-VLDSSAALVGEAAIPAMTLVIGANLLSGL 181
P + I I + P ++ E + + + S + G+ A+P + +V+GA+L + +
Sbjct: 278 PPLYSLFIALFIAVVPPLQRFFFEEGSFVEGSITSGIRMAGQVAVPMILVVLGASLATDI 337
Query: 182 K--------RSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGS--DSLYQFILLL 231
R +I+ + R +++PL + F I + D ++ ++ L
Sbjct: 338 SKTEPTQEVRKNNDTRVIIVCLLGRMVVVPLALLPAFSLLSYFSEISTVDDPVFVVVIFL 397
Query: 232 QYAVPPALAVGTIIQLFETSESECSVILLWTYAV 265
P A+ + I QL E EC+ +L W+YAV
Sbjct: 398 LVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431
>sp|Q7MFC2|MALF_VIBVY Maltose transport system permease protein MalF OS=Vibrio vulnificus
(strain YJ016) GN=malF PE=3 SV=1
Length = 523
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 152 RVLDSSAALVGEAAIPAMTLVIGANLL------SGLKRSGVGVSLIMGIIAIRYILLPLL 205
+ +D + VG P + IG + G+K + + + + +I +LL L+
Sbjct: 247 QAMDEAGNFVGNTVSPGFVVQIGTDNFERVWKDDGIKEPFISIFIWTVVFSILTVLLTLM 306
Query: 206 GIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVIL 259
+++ + ++ + ++Y+ +L+L YAVP +++ LF S E +++L
Sbjct: 307 IGLVLASVVQWEELKGRAIYRVLLILPYAVPAFISILIFKGLFNQSFGEINMVL 360
>sp|Q8D3U8|MALF_VIBVU Maltose transport system permease protein MalF OS=Vibrio vulnificus
(strain CMCP6) GN=malF PE=3 SV=1
Length = 523
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 152 RVLDSSAALVGEAAIPAMTLVIGANLL------SGLKRSGVGVSLIMGIIAIRYILLPLL 205
+ +D + VG P + IG + G+K + + + + +I +LL L+
Sbjct: 247 QAMDEAGNFVGNTVSPGFVVQIGTDNFERVWKDDGIKEPFISIFIWTVVFSILTVLLTLM 306
Query: 206 GIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVIL 259
+++ + ++ + ++Y+ +L+L YAVP +++ LF S E +++L
Sbjct: 307 IGLVLASVVQWEELKGRAIYRVLLILPYAVPAFISILIFKGLFNQSFGEINMVL 360
>sp|Q55DV2|GDT6_DICDI Probable inactive serine/threonine-protein kinase gdt6
OS=Dictyostelium discoideum GN=gdt6 PE=3 SV=1
Length = 1452
Score = 32.0 bits (71), Expect = 5.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 116 DLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGA 175
D K+IF+P+ + +IGF+ GT FR + E + ++ + + + + + G+
Sbjct: 341 DTKLIFSPNNTSEVIGFINGTNQRFRSSLYIEFSNNVIIKNCVIIESSSETRSPLVFFGS 400
Query: 176 N--LLSGLKRSGVGVSLI 191
N L L S G SLI
Sbjct: 401 NVYLSDNLISSKSGSSLI 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,860,760
Number of Sequences: 539616
Number of extensions: 3542808
Number of successful extensions: 13250
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13240
Number of HSP's gapped (non-prelim): 26
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)