Query 023466
Match_columns 282
No_of_seqs 187 out of 909
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2E-57 4.3E-62 422.7 8.8 263 2-282 141-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.2E-29 2.6E-34 241.5 20.4 257 4-274 117-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 2.7E-22 5.9E-27 187.8 18.7 142 118-277 178-320 (321)
4 PRK09903 putative transporter 99.9 4E-22 8.6E-27 186.5 18.9 141 118-277 169-310 (314)
5 COG0679 Predicted permeases [G 99.9 6.7E-22 1.4E-26 185.1 17.5 191 3-279 118-309 (311)
6 TIGR00841 bass bile acid trans 98.9 6.6E-09 1.4E-13 96.5 10.0 108 166-279 14-122 (286)
7 PF01758 SBF: Sodium Bile acid 98.4 4.9E-06 1.1E-10 72.4 11.3 109 166-279 4-113 (187)
8 TIGR00832 acr3 arsenical-resis 98.3 2.8E-05 6.1E-10 73.7 15.8 141 123-279 11-158 (328)
9 COG0385 Predicted Na+-dependen 98.1 6.2E-05 1.3E-09 71.0 13.6 110 164-279 42-152 (319)
10 PF13593 DUF4137: SBF-like CPA 97.5 0.00084 1.8E-08 63.3 10.3 144 123-278 2-147 (313)
11 COG0798 ACR3 Arsenite efflux p 96.4 0.13 2.7E-06 49.1 14.7 139 124-280 20-167 (342)
12 PF04172 LrgB: LrgB-like famil 87.2 22 0.00047 32.0 13.5 138 118-274 17-155 (215)
13 COG1346 LrgB Putative effector 83.1 32 0.0007 31.3 12.3 138 119-275 31-169 (230)
14 PRK10711 hypothetical protein; 82.9 37 0.0008 30.9 13.8 138 118-274 28-166 (231)
15 KOG2718 Na+-bile acid cotransp 76.6 2.4 5.3E-05 41.1 3.3 106 168-279 121-228 (371)
16 PRK04288 antiholin-like protei 73.5 73 0.0016 29.0 13.9 137 118-273 33-170 (232)
17 PF03812 KdgT: 2-keto-3-deoxyg 73.1 44 0.00095 31.8 10.5 44 168-213 53-96 (314)
18 TIGR00659 conserved hypothetic 71.6 80 0.0017 28.7 14.1 137 118-273 27-164 (226)
19 PRK03562 glutathione-regulated 62.0 2E+02 0.0043 29.8 14.3 120 152-277 260-379 (621)
20 COG2855 Predicted membrane pro 60.2 1.1E+02 0.0024 29.4 10.6 138 121-278 37-176 (334)
21 PF03601 Cons_hypoth698: Conse 60.0 1.4E+02 0.003 28.2 11.2 51 119-179 24-75 (305)
22 PRK03562 glutathione-regulated 56.0 1.1E+02 0.0024 31.6 10.7 114 118-248 25-139 (621)
23 PRK03659 glutathione-regulated 55.4 2.5E+02 0.0055 28.8 13.9 120 152-277 257-376 (601)
24 PF04531 Phage_holin_1: Bacter 49.9 55 0.0012 24.9 5.6 26 115-140 2-28 (84)
25 COG3180 AbrB Putative ammonia 48.8 2.6E+02 0.0057 27.1 14.6 103 168-276 62-166 (352)
26 KOG4821 Predicted Na+-dependen 47.8 60 0.0013 29.6 6.2 82 187-275 82-165 (287)
27 PF09925 DUF2157: Predicted me 43.5 1.8E+02 0.004 23.8 8.6 43 221-263 86-128 (145)
28 TIGR03082 Gneg_AbrB_dup membra 43.4 2E+02 0.0042 24.1 10.9 46 230-275 108-154 (156)
29 COG3329 Predicted permease [Ge 39.3 1.4E+02 0.0031 28.5 7.6 54 118-179 213-266 (372)
30 KOG3788 Predicted divalent cat 31.2 3.4E+02 0.0075 27.0 9.0 55 162-241 138-192 (441)
31 KOG1397 Ca2+/H+ antiporter VCX 29.8 5.5E+02 0.012 25.5 10.0 95 125-219 79-189 (441)
32 PF05145 AmoA: Putative ammoni 28.4 5.1E+02 0.011 24.4 10.4 103 168-276 29-133 (318)
33 PRK12460 2-keto-3-deoxyglucona 27.3 1.4E+02 0.003 28.5 5.5 78 168-253 53-133 (312)
34 TIGR00793 kdgT 2-keto-3-deoxyg 25.3 1.6E+02 0.0035 28.1 5.5 48 168-217 53-100 (314)
35 PF05684 DUF819: Protein of un 24.5 6.6E+02 0.014 24.4 14.9 138 119-271 23-162 (378)
36 PF14242 DUF4342: Domain of un 24.1 90 0.0019 23.9 3.0 36 102-137 16-61 (84)
37 TIGR02978 phageshock_pspC phag 21.9 3E+02 0.0066 22.4 5.9 41 240-280 16-56 (121)
38 COG1593 DctQ TRAP-type C4-dica 21.3 7.9E+02 0.017 24.1 13.7 42 219-260 304-351 (379)
39 PRK03659 glutathione-regulated 20.5 9.3E+02 0.02 24.7 12.0 114 118-248 25-139 (601)
40 PRK10669 putative cation:proto 20.3 8.9E+02 0.019 24.4 11.8 145 117-279 25-171 (558)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2e-57 Score=422.65 Aligned_cols=263 Identities=45% Similarity=0.729 Sum_probs=219.0
Q ss_pred ccccccchhhHHHhHHHhhhhhhhhheeeehhcccccccccCCCCCCCcccccccCCCCccccccccccCCCcCCCCCCC
Q 023466 2 RRIQCNFSLSYELVFWPQVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRS 81 (282)
Q Consensus 2 ~~~~~~~G~~Y~~s~~~~~g~i~~WT~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (282)
||+|.+||+.|+ +|+||+|++++|||+||++.++..+.++.- ++..+++..|..+.++.| +|+++
T Consensus 141 ~~~c~s~Gi~Y~-sf~~~lg~il~wty~Y~~~~~p~~~~~~~~-----~~~~Ve~~~~~~~~~s~e---------~~~~~ 205 (408)
T KOG2722|consen 141 REKCASRGISYV-SFSQQLGQILRWTYVYRMLLPPNLELMSAL-----KESPVEALLESVPQPSVE---------SDEDS 205 (408)
T ss_pred hhhhhhcchhHH-HHHHHhhhhEEEEEEeeeecCCchhhhhcC-----ChhhhhhhhhccCCCCcc---------ccccc
Confidence 799999999999 999999999999999998877643222110 011111111111100000 01111
Q ss_pred CCcchhhhhhcccC----CCCchhhHHHHHHHhhhhhhhhhhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHH
Q 023466 82 PDDSQIQAETRSTK----SRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSS 157 (282)
Q Consensus 82 ~~~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~~~~~lk~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~ 157 (282)
+++.+ +.++++ ...+.+.|.+++.+...++.++|++++||++|+++|++++.+||+|+++|++++|+++++|+
T Consensus 206 ~~k~~---ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itds 282 (408)
T KOG2722|consen 206 TCKTL---LLASKENRNNQVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDS 282 (408)
T ss_pred ccccc---cccccccCCCceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHH
Confidence 11111 111111 11247788888888888888899999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHhhccc
Q 023466 158 AALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVP 236 (282)
Q Consensus 158 l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~-~d~~~~~Vlll~~a~P 236 (282)
++++|++++||+++++|+||.+|++++..+.|.++++++.||+++|+.+++++..++|+|+++ +||+|++|+++|+++|
T Consensus 283 v~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~P 362 (408)
T KOG2722|consen 283 VTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASP 362 (408)
T ss_pred HHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 023466 237 PALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIWLLT 282 (282)
Q Consensus 237 ~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~~~~ 282 (282)
||+|++++||+||.+|+|||.+++|+|+++.+++++|.++|+|++.
T Consensus 363 pAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 363 PAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred chhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999873
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=1.2e-29 Score=241.49 Aligned_cols=257 Identities=27% Similarity=0.407 Sum_probs=176.0
Q ss_pred ccccchhhHHHhHHHhhhhhhhhheeeehhcccccccccCCCCCCCcccccc---cCCCCccccc------cc--cccCC
Q 023466 4 IQCNFSLSYELVFWPQVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHII---SSGESSTNIF------LE--SSRKP 72 (282)
Q Consensus 4 ~~~~~G~~Y~~s~~~~~g~i~~WT~~y~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~--~~~~~ 72 (282)
.++++|++|+ +++.++++++.|++|+.+++...++.+..+....+.+...+ ++++.+.++. .+ +++++
T Consensus 117 l~g~~~~~~~-~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (385)
T PF03547_consen 117 LFGERGVAYA-IIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSP 195 (385)
T ss_pred Hhcchhhhhe-hHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCcccccccccccccCCcc
Confidence 4788999999 99999999999999999998664332221100000000000 0000000000 00 00000
Q ss_pred Cc-CCCCCCCCCcchhhhhhcccCCCCchhhHHHHHHHhhhhhhhhhhhhchhHHHHHHHHHHHhhccchhhhhccCCch
Q 023466 73 LL-HSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL 151 (282)
Q Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~lk~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl 151 (282)
.. +++..++ ..++. ...++.+.+...+.+.++..++...+..+|.++||+++|+++|++++++|+.+++++.
T Consensus 196 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~----- 268 (385)
T PF03547_consen 196 SSTPSQSSAS-APSSV-STSPSPSNSTGAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP----- 268 (385)
T ss_pred cccccccccc-cchhh-ccCCcccccchhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----
Confidence 00 0000000 00000 0000011111233333333333323333588899999999999999999988876555
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023466 152 RVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL 231 (282)
Q Consensus 152 ~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll 231 (282)
.++.++++++|++++|++|+++|++|++..++...+.+.....++.|++++|+++++++++ ++.|+....++++
T Consensus 269 ~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~------~~l~~~~~~~~~~ 342 (385)
T PF03547_consen 269 SFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFL------LGLDGDMARVLIL 342 (385)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHH
Confidence 6899999999999999999999999998666656677777778999999999999999987 4567788999999
Q ss_pred hhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023466 232 QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 274 (282)
Q Consensus 232 ~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~ 274 (282)
++++|+|++..++|++||.+++++|..++|||+++++|+|+|+
T Consensus 343 ~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 343 QAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred hccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.89 E-value=2.7e-22 Score=187.81 Aligned_cols=142 Identities=19% Similarity=0.313 Sum_probs=126.5
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCch-hHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL-RVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIA 196 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl-~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~ 196 (282)
|.+.||+++|.++|+++..++ .++ .++.++++++|++++|++|+++|..+.. ++.+.+.+.++..++
T Consensus 178 ~~~~nP~iia~i~Gl~~~~~~----------i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~~~ 245 (321)
T TIGR00946 178 KLIKFPPLWAPLLSVILSLVG----------FKMPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDAILALI 245 (321)
T ss_pred HHHhCCChHHHHHHHHHHHHh----------hcCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHHHHHHH
Confidence 445799999999999999986 344 8999999999999999999999999975 223334577889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 197 IRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITF 276 (282)
Q Consensus 197 ~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l 276 (282)
+|+++.|++++++... ++.|+....++++++|||+|.+..++|++||.|+++++..+++||++|++|+|+|+.+
T Consensus 246 ~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 246 VRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 5678889999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 023466 277 Y 277 (282)
Q Consensus 277 ~ 277 (282)
+
T Consensus 320 ~ 320 (321)
T TIGR00946 320 L 320 (321)
T ss_pred h
Confidence 3
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.89 E-value=4e-22 Score=186.49 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=124.5
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCch-hHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL-RVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIA 196 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl-~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~ 196 (282)
+.+.||+++|.++|+++.+.+ .++ .++.++++++|++++|++|+++|++|++... +. ++..+..++
T Consensus 169 ~~~~nP~iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~--~~-~~~~~~~~~ 235 (314)
T PRK09903 169 SAAKEPVVWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF--EF-SAEIAYNTF 235 (314)
T ss_pred HHHhchHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc-cHHHHHHHH
Confidence 446799999999999998875 455 8999999999999999999999999997432 22 356778899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 197 IRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITF 276 (282)
Q Consensus 197 ~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l 276 (282)
.|+++.|++++++... ++.|+....++++++|||+|++..++|++||.|++.++..++.||++|++|+|+|+.+
T Consensus 236 ~Kli~~P~i~~~~~~~------~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 236 LKLILMPLALLLVGMA------CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999777664 4668889999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 023466 277 Y 277 (282)
Q Consensus 277 ~ 277 (282)
+
T Consensus 310 ~ 310 (314)
T PRK09903 310 S 310 (314)
T ss_pred H
Confidence 4
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.88 E-value=6.7e-22 Score=185.13 Aligned_cols=191 Identities=20% Similarity=0.363 Sum_probs=160.2
Q ss_pred cccccchhhHHHhHHHhhhhhhhhheeeehhcccccccccCCCCCCCcccccccCCCCccccccccccCCCcCCCCCCCC
Q 023466 3 RIQCNFSLSYELVFWPQVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSP 82 (282)
Q Consensus 3 ~~~~~~G~~Y~~s~~~~~g~i~~WT~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (282)
+.-|++|++|+ +++++++++..|++|+.++...++ +
T Consensus 118 ~~~G~~gl~~~-~i~~~~~~~~~~~~g~~~l~~~~~--------~----------------------------------- 153 (311)
T COG0679 118 SLFGEKGLAYA-VIFLIIGLFLMFTLGVILLARSGG--------G----------------------------------- 153 (311)
T ss_pred HHcCcchHHHH-HHHHHHHHHHHHHHHHHHHHHhcC--------C-----------------------------------
Confidence 34589999999 999999999999999998774421 0
Q ss_pred CcchhhhhhcccCCCCchhhHHHHHHHhhhhhhhhhhhhchhHHHHHHHHHHHhhccchhhhhccCCch-hHHHHHHHHh
Q 023466 83 DDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL-RVLDSSAALV 161 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~lk~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl-~~i~~~l~~l 161 (282)
++. ...+..+ +.+.||+++|.++|+++...+ .++ .++.++++++
T Consensus 154 -~~~-------------------~~~~~~~-----~~~~nP~i~a~i~g~~~~~~~----------i~lP~~~~~~~~~l 198 (311)
T COG0679 154 -TNK-------------------SLLSVLK-----KLLTNPLIIALILGLLLNLLG----------ISLPAPLDTAVDLL 198 (311)
T ss_pred -chh-------------------HHHHHHH-----HHHhCcHHHHHHHHHHHHHcC----------CCCcHHHHHHHHHH
Confidence 000 0001222 556899999999999999876 334 7999999999
Q ss_pred cCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHH
Q 023466 162 GEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV 241 (282)
Q Consensus 162 G~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~ 241 (282)
|++++|++|+++|.+|+. .+.++.+.+.++.....|+++.|++++++.++ ++.++....++++++|||+|.|.
T Consensus 199 ~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~------~~l~~~~~~v~vl~~a~P~A~~~ 271 (311)
T COG0679 199 ASAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKL------LGLSGLALQVLVLLSAMPTAVNA 271 (311)
T ss_pred HHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHhhCcHHhHH
Confidence 999999999999999998 44555666777777777999999999998876 56677788999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 242 GTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 279 (282)
Q Consensus 242 ~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~ 279 (282)
.++|++||.|++.++..++.||++|++|+|.|..++.+
T Consensus 272 ~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 272 YVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888765
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.91 E-value=6.6e-09 Score=96.47 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhccccccC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHH
Q 023466 166 IPAMTLVIGANLLSGLKRS-GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI 244 (282)
Q Consensus 166 iPl~livlG~~L~~~~~~~-~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~i 244 (282)
..++|+.+|.++.....++ ..+++......+.|++++|++++++.++ ++.|+.....+++.+++|+|.+..++
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHheeeCCCchHHHHH
Confidence 6678899999988533222 2234667788888999999999888875 57789999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 245 IQLFETSESECSVILLWTYAVAAFALTLWITFYIW 279 (282)
Q Consensus 245 a~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~ 279 (282)
++++|.|.+.++.+...+++++++++|+|+.++..
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.36 E-value=4.9e-06 Score=72.39 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHhcccc-ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHH
Q 023466 166 IPAMTLVIGANLLSGL-KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI 244 (282)
Q Consensus 166 iPl~livlG~~L~~~~-~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~i 244 (282)
+-++|+.+|.++.-.. ++...++|.+....+..++++|++++++.+.+ ++++|.+..-+++.+++|.|.....+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 4467778888876422 22223467778889999999999999998433 68899999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 245 IQLFETSESECSVILLWTYAVAAFALTLWITFYIW 279 (282)
Q Consensus 245 a~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~ 279 (282)
+.+.|+|.+....+..++++.+++++|++..++..
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988753
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.29 E-value=2.8e-05 Score=73.72 Aligned_cols=141 Identities=16% Similarity=0.046 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhH------HHHHHHHHHhccc-cccCCCChhHHHHHH
Q 023466 123 PSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIP------AMTLVIGANLLSG-LKRSGVGVSLIMGII 195 (282)
Q Consensus 123 P~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiP------l~livlG~~L~~~-~~~~~~~~~~i~~~~ 195 (282)
..+.++++|++++..-| ....+.... .+.+...| .+|+.+|.++.-. .++...++|.+....
T Consensus 11 ~~~~~~i~~~~~g~~~P---------~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~ 79 (328)
T TIGR00832 11 WIFLAIAAGVGLGVLFP---------SVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSL 79 (328)
T ss_pred HHHHHHHHHHHHHHhcc---------ccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHH
Confidence 44677778888887643 111222211 22345556 3566666777532 233334567788889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023466 196 AIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWIT 275 (282)
Q Consensus 196 ~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~ 275 (282)
+.-++++|++++++.+.+ ++.+|.+..=+++.+++|.+.....++.+.++|...+..+...++++++++.|.+..
T Consensus 80 ~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ 154 (328)
T TIGR00832 80 FINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAW 154 (328)
T ss_pred HHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998863 477788999999999999999999999999999988888888999999999999988
Q ss_pred HHHH
Q 023466 276 FYIW 279 (282)
Q Consensus 276 l~l~ 279 (282)
+|..
T Consensus 155 ll~~ 158 (328)
T TIGR00832 155 LLLG 158 (328)
T ss_pred HHHh
Confidence 7754
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.11 E-value=6.2e-05 Score=70.95 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=90.4
Q ss_pred ChhHHHHHHHHHHhcccc-ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHH
Q 023466 164 AAIPAMTLVIGANLLSGL-KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVG 242 (282)
Q Consensus 164 ~aiPl~livlG~~L~~~~-~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~ 242 (282)
...-++|+..|..|.... +..-.++|....+.+.-++++|++++++.+. ++.||....=+++..++|.++..-
T Consensus 42 ~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l~~~l~~Gl~ll~~~Pggv~S~ 115 (319)
T COG0385 42 IALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPLPPELAVGLLLLGCCPGGVASN 115 (319)
T ss_pred HHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHhHHheeeCCCchhHH
Confidence 345566777777776422 2333456778888999999999999999986 567888888888999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 243 TIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 279 (282)
Q Consensus 243 ~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~ 279 (282)
.++.++++|...+-.....|++++++..|+++.+|+.
T Consensus 116 ~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 116 AMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998888888889999999999999998763
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.48 E-value=0.00084 Score=63.31 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhcccc-ccCCCChhHHHHHHHHHHHH
Q 023466 123 PSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGL-KRSGVGVSLIMGIIAIRYIL 201 (282)
Q Consensus 123 P~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~-~~~~~~~~~i~~~~~~Rlil 201 (282)
+-+++.+++++++..-|-. +....++.. +......+.+..++-|.+|.... +....++|....+...-+++
T Consensus 2 ~fl~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl 73 (313)
T PF13593_consen 2 WFLLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVL 73 (313)
T ss_pred chHHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3466777777776653311 111112210 23334458888889998887532 22233456777788889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 202 LPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV-GTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 278 (282)
Q Consensus 202 lP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~-~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l 278 (282)
.|++++++...... + .++.+..=+++..++|+.+.. ..++++.|+|+..+-.....+.++.++..|+|+.+++
T Consensus 74 ~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 74 FPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 99999999886321 1 356688888999999999776 5799999999877777777999999999999999887
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.13 Score=49.07 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHH--HhcCChhHHHHHHHHHH---hcccc----ccCCCChhHHHHH
Q 023466 124 STIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAA--LVGEAAIPAMTLVIGAN---LLSGL----KRSGVGVSLIMGI 194 (282)
Q Consensus 124 ~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~--~lG~~aiPl~livlG~~---L~~~~----~~~~~~~~~i~~~ 194 (282)
..+++++|+.++..-| -+.+.+. ..++..+|.+..++=+. +.+.+ +.-.-+.|-....
T Consensus 20 v~l~i~~Gi~lG~~~p-------------~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~ls 86 (342)
T COG0798 20 VFLAIAIGILLGVHFP-------------GLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILS 86 (342)
T ss_pred HHHHHHHHHHHHhccc-------------chhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHH
Confidence 4788889998887632 1344444 57788888776544322 22221 1112235778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023466 195 IAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 274 (282)
Q Consensus 195 ~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~ 274 (282)
.+.-.++-|++++.+.+++ +++.|.+..=+++....|.-...-..+++-++|++.++..+.+.-++.++..|.+.
T Consensus 87 L~~Nwii~P~lm~~la~~f-----l~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 87 LFVNWIIGPLLMFALAWFF-----LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 68888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 023466 275 TFYIWL 280 (282)
Q Consensus 275 ~l~l~~ 280 (282)
.+|+..
T Consensus 162 ~~~l~v 167 (342)
T COG0798 162 KFFLGV 167 (342)
T ss_pred HHHHhh
Confidence 888764
No 12
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=87.21 E-value=22 Score=31.96 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=77.8
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 197 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 197 (282)
+.++||.+++.++=+++-..- +.|.+--.+.-+.+...--|. .+.+|--|++-.+.-+.+.+.+...++.
T Consensus 17 ~~~l~P~l~a~~~ii~~L~~~---------~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~ 86 (215)
T PF04172_consen 17 SPFLNPLLIAIVLIIAFLLLT---------GIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLV 86 (215)
T ss_pred CCcccHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999887755554432 356654455555554444444 6688888886221111222334444433
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh-cccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023466 198 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQY-AVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 274 (282)
Q Consensus 198 RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~-a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~ 274 (282)
=-++--.....+.+. ++.|+.....+.--+ .+|-|+. +++..|.+++..+..+..|=++-.+-=|.++
T Consensus 87 g~~~~~~~~~~l~~~------lgl~~~~~~Sl~pkSVTtpiAi~---is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 87 GSLVSIFSAVLLARL------LGLSPEIILSLAPKSVTTPIAIE---ISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHHHH------HCcCHHHHHHHHHHHhhHHHHHH---HHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 333333333333333 454554444444443 3666665 4688889888888888877666665555443
No 13
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=83.07 E-value=32 Score=31.26 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=74.0
Q ss_pred hhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHH
Q 023466 119 MIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIR 198 (282)
Q Consensus 119 ~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~R 198 (282)
.++||.+++.++.+.+-..- +.|.+-=.+.-+.+-..=-| +.+.++-=|++-.+.-+.+++.+...+++=
T Consensus 31 ~~l~PlLv~~~~li~~L~~~---------~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vG 100 (230)
T COG1346 31 PFLNPLLVATVLLIAFLLLF---------GISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVG 100 (230)
T ss_pred cccchHHHHHHHHHHHHHHc---------CCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999988877765542 24443222222333333334 555677777762222222233444444433
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc-ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023466 199 YILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYA-VPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWIT 275 (282)
Q Consensus 199 lillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a-~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~ 275 (282)
-++-=..++.+.++ ++.|+.....++=.+. +|.|+- +++..|.-++..+..+..+=++-.+.-|...-
T Consensus 101 s~~ai~s~~llak~------~g~~~~~~~Sl~PkSvTTpiAm~---vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk 169 (230)
T COG1346 101 SVVAIISGVLLAKL------FGLSPELILSLLPKSVTTPIAME---VSESIGGIPALTAVFVILTGILGAVLGPLLLK 169 (230)
T ss_pred HHHHHHHHHHHHHH------hCCCHHHHHHhcccccccHHHHH---HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332333333332 4556655555554443 566654 46778877778888877777766665555443
No 14
>PRK10711 hypothetical protein; Provisional
Probab=82.95 E-value=37 Score=30.91 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=80.5
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 197 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 197 (282)
..++||.+++.++-+++-..- +.|.+--.+.-+.+...--|. ++.++--|++-.+.-+.+.+.+...+++
T Consensus 28 ~~~l~Pll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~I~~~~~v 97 (231)
T PRK10711 28 FPLLNPLLVAMVVIIPFLLLT---------GIPYEHYFKGSEVLNDLLQPA-VVALAFPLYEQLHQIRARWKSIISICFI 97 (231)
T ss_pred CCcccHHHHHHHHHHHHHHHh---------CCCHHHHHhccHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446799999987666665442 356544444545554444443 3477777776222212223444444444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc-ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023466 198 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYA-VPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 274 (282)
Q Consensus 198 RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a-~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~ 274 (282)
=-++--...+.+.+. ++.|+.....++-.+. +|-|+. +++..|..++..+..+..|=++-.+--|.+.
T Consensus 98 G~~v~i~s~~~l~~~------lg~~~~~~~Sl~pkSVTtPIAm~---is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 98 GSVVAMVTGTAVALW------MGATPEIAASILPKSVTTPIAMA---VGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHHH------HCcCHHHHHHHhhhhhhHHHHHH---HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443 5556666666555554 677776 4588999998888888877666666555443
No 15
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=76.58 E-value=2.4 Score=41.10 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccccccC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHH
Q 023466 168 AMTLVIGANLLSGLKRS-GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQ 246 (282)
Q Consensus 168 l~livlG~~L~~~~~~~-~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~ 246 (282)
..++.+|.++.--.... ..++..+....+.++++.|+.++..-..+ .+|.+.. ...++..|++|+........
T Consensus 121 ~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~~--ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 121 SNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPAALA--AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred HHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCcccc--ceeEEEEeccCCcchhhhee
Confidence 34556666665312111 12234455566669999999998866432 2554321 45667777777777777777
Q ss_pred HcCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023466 247 LFETSESECSV-ILLWTYAVAAFALTLWITFYIW 279 (282)
Q Consensus 247 ~~~~~~~~~s~-~l~~syl~sivtlp~w~~l~l~ 279 (282)
.+..+....+. +...+++.+++..|+|...+-.
T Consensus 195 ~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~ 228 (371)
T KOG2718|consen 195 KRLPGDVTLSILMTTISTVLAVILTPLLSILLGR 228 (371)
T ss_pred ecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 77433344455 4457899999999999987744
No 16
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.47 E-value=73 Score=29.04 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=76.8
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 197 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 197 (282)
+.++||.+++.++-+.+-..- +.|.+--.+.-+.+...--| +.+.++--|++-.+.-+.+.+.+...+++
T Consensus 33 ~~~lnPll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~v 102 (232)
T PRK04288 33 FFLFTPLFVAMVLGIAFLKLT---------GISYEEYNIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVV 102 (232)
T ss_pred CcchhHHHHHHHHHHHHHHHh---------CCCHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446899999887766665442 35554334444444333333 23466677776222111223334444444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc-ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023466 198 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYA-VPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLW 273 (282)
Q Consensus 198 RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a-~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w 273 (282)
=-++--...+.+.++ ++.|+.....++=.+. +|-|+. +++..|..+...+..+..+=++-.+.-|..
T Consensus 103 G~~~~i~s~~~la~~------lgl~~~~~~Sl~pKSVTtPIAm~---is~~iGG~psLtA~~ViitGi~Gai~g~~l 170 (232)
T PRK04288 103 GSVCSVLIIYLVAKL------IQLDNAVMASMLPQAATTAIALP---VSAGIGGIKEITSFAVIFNAVIIYALGAKF 170 (232)
T ss_pred HHHHHHHHHHHHHHH------HCcCHHHHHHHhhHhhhHHHHHH---HHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344443 5656655555555544 677765 568889999999888888877766655543
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=73.07 E-value=44 Score=31.81 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 168 AMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAA 213 (282)
Q Consensus 168 l~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~ 213 (282)
+-+++.|+++. .|....-.|+-...+..|+++-=++++++.+++
T Consensus 53 ~~l~~~Ga~I~--~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~f 96 (314)
T PF03812_consen 53 VFLFCMGAQID--LKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFF 96 (314)
T ss_pred HHHHHhccccc--hhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 44667787776 344444456677788999999999999888874
No 18
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=71.56 E-value=80 Score=28.66 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=74.2
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHH
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 197 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 197 (282)
+.++||.+++.++-+.+-..- +.|.+--.+.-+.+...--| +++.++--|++-.+.-+.+.+.+...+++
T Consensus 27 ~~~lnPvl~~~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~ 96 (226)
T TIGR00659 27 RPYLNPLLLTPLVLVGILLLV---------GIPYESYMLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAV 96 (226)
T ss_pred CccccHHHHHHHHHHHHHHHh---------CCCHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456899999988766665442 35553334444444333333 33466777776221111122333333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc-ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023466 198 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYA-VPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLW 273 (282)
Q Consensus 198 RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a-~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w 273 (282)
=-++--.....+.+. ++.|+.....+.-.+. +|-|+- +++..|.+++..+..+..|=++-.+.-|..
T Consensus 97 G~~~~~~s~~~la~~------lg~~~~i~~Sl~pkSvTtpiAm~---vs~~iGG~~sLta~~vvitGi~Ga~~g~~l 164 (226)
T TIGR00659 97 GSVIAIISGTLLALL------LGLGPEIIASLLPKSVTTPIAMH---VSEMIGGIPAVTAVFVILTGLLGTVFGPMV 164 (226)
T ss_pred HHHHHHHHHHHHHHH------HCcCHHHHHHhhhHHhhHHHHHH---HHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 4545555555554443 566654 568888899888888887776666655543
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=62.05 E-value=2e+02 Score=29.77 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=69.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023466 152 RVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL 231 (282)
Q Consensus 152 ~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll 231 (282)
+-+.+.++-..+.-.|+--+.+|+++.-..-.. .+..+...++..++.=++.+++..+. +|. +...-...-+.+
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~---~g~-~~~~a~~~gl~L 333 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIAMLWLLARP---LGV-PRKQRRWFAVLL 333 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHhHHHHHHHHH
Confidence 456666666677888999999999886311111 12233333444444434444433332 122 322233444455
Q ss_pred hhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 232 QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFY 277 (282)
Q Consensus 232 ~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~ 277 (282)
...-..+..+..++...|.=.++....+....++|.+.-|+...++
T Consensus 334 ~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 334 GQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred hccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567777777778877775455666666667788888888776654
No 20
>COG2855 Predicted membrane protein [Function unknown]
Probab=60.17 E-value=1.1e+02 Score=29.39 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred hchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHH
Q 023466 121 FAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYI 200 (282)
Q Consensus 121 ~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rli 200 (282)
..|+++|+++|++++..++.++- ....++.-..--.....+.+|.++.-..- ...+.+ .+.+...-+.
T Consensus 37 l~al~lAIllGi~l~~l~~~~~~----------~~~GI~fs~k~LLr~gIvLlG~~ltl~~i-~~~G~~-~v~~~~~~l~ 104 (334)
T COG2855 37 LSALTLAILLGILLGILPQIPAQ----------TSAGITFSSKKLLRLGIVLLGFRLTLSDI-ADVGGS-GVLIIAITLS 104 (334)
T ss_pred chHHHHHHHHHHHHhccccchhh----------hccchhhhHHHHHHHHHHHHcceeeHHHH-HHcCcc-HHHHHHHHHH
Confidence 34999999999999977654322 22223333333466777788888763111 111111 1222222111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHH--HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 201 LLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTII--QLFETSESECSVILLWTYAVAAFALTLWITFYI 278 (282)
Q Consensus 201 llP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia--~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l 278 (282)
..+.+..++.+ +++.|+ +.++++-.++-.--..+++| ..-+.++++.+..+..-+++..+.+.+.-.++-
T Consensus 105 ----~t~~~~~~lg~--~lgld~--~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~ 176 (334)
T COG2855 105 ----STFLFAYFLGK--LLGLDK--KLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYP 176 (334)
T ss_pred ----HHHHHHHHHHH--HhCCCH--HHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHH
Confidence 12222222222 355564 55555555555444444444 445666666655555455555444444444443
No 21
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=60.02 E-value=1.4e+02 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=38.9
Q ss_pred hhhchhHHHHHHHHHHHh-hccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 023466 119 MIFAPSTIAAIIGFVIGT-ISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS 179 (282)
Q Consensus 119 ~l~nP~iia~i~Glli~~-~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~ 179 (282)
.-.++.++|+++|++++- +.. ..+.....++.-..--.....+.+|.++.-
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~----------~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~ 75 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFG----------LPARFKPGIKFSSKKLLRLGIVLLGFRLSF 75 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccC----------CcHHHHhHHHHHHHHHHHHHHHHHCccccH
Confidence 346789999999999984 431 124666777777778899999999999863
No 22
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.01 E-value=1.1e+02 Score=31.64 Aligned_cols=114 Identities=17% Similarity=0.007 Sum_probs=57.0
Q ss_pred hhhhchhHHHHH-HHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHH
Q 023466 118 KMIFAPSTIAAI-IGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIA 196 (282)
Q Consensus 118 k~l~nP~iia~i-~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~ 196 (282)
|.+.-|++++-+ .|+++| |..-+++ . -.+.++.+++..+.+.|+.+|..+.-..-. + ..+.++....
T Consensus 25 ~rl~lp~vlgyilaGillG--P~~lg~i-~-------~~~~i~~laelGvv~LlF~iGLEl~~~~l~-~-~~~~~~~~g~ 92 (621)
T PRK03562 25 VRLGLGSVLGYLIAGCIIG--PWGLRLV-T-------DVESILHFAEFGVVLMLFVIGLELDPQRLW-K-LRRSIFGGGA 92 (621)
T ss_pred HHhCCChHHHHHHHHHHhC--cccccCC-C-------CHHHHHHHHHHHHHHHHHHHHhCcCHHHHH-H-HHHHHHHHHH
Confidence 666678888764 466665 2110110 0 124578899999999999999988631111 1 1233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHc
Q 023466 197 IRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLF 248 (282)
Q Consensus 197 ~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~ 248 (282)
. .++++.+....+..+ .|+ + -.....+....+.+.+|+..-++.++.
T Consensus 93 ~-qv~~~~~~~~~~~~~--~g~-~-~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 93 L-QMVACGGLLGLFCML--LGL-R-WQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred H-HHHHHHHHHHHHHHH--hCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 233343332222211 122 1 112333444444456676666666653
No 23
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.39 E-value=2.5e+02 Score=28.85 Aligned_cols=120 Identities=12% Similarity=0.125 Sum_probs=68.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023466 152 RVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLL 231 (282)
Q Consensus 152 ~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll 231 (282)
+-+.+.++-..+.-.|+--+.+|+++.-..-.. .+..+...++..++.=++.+++..+. +|. +...-...-+.+
T Consensus 257 ~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~~---~g~-~~~~al~~g~~L 330 (601)
T PRK03659 257 HELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLARL---YGL-RSSERMQFAGVL 330 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHHHHHHHHHHH
Confidence 455556666678889999999998875311111 12233344444444444444443332 122 211122333444
Q ss_pred hhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 232 QYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFY 277 (282)
Q Consensus 232 ~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~ 277 (282)
...-.-+..+..++..+|.=.++....+....+++.+.-|+...++
T Consensus 331 ~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 331 SQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred hccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556777777777877775555555666777788887777766554
No 24
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.95 E-value=55 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.6
Q ss_pred hhhh-hhhchhHHHHHHHHHHHhhccc
Q 023466 115 IDLK-MIFAPSTIAAIIGFVIGTISPF 140 (282)
Q Consensus 115 ~~lk-~l~nP~iia~i~Glli~~~p~l 140 (282)
+|+| ++.||..+..++|.++.++..+
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHHHHH
Confidence 4555 5789999999999999887543
No 25
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=48.85 E-value=2.6e+02 Score=27.11 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccccccCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHH-HHHHH
Q 023466 168 AMTLVIGANLLSGLKRSGVG-VSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALA-VGTII 245 (282)
Q Consensus 168 l~livlG~~L~~~~~~~~~~-~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~-~~~ia 245 (282)
+...++|.+++.....+... .+.-+....+=.++.=++++...++..|++.+|...- ...++|=|.. ...||
T Consensus 62 ~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta------~~gs~PGgas~m~~iA 135 (352)
T COG3180 62 AGQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA------FLGSSPGGASAMVSIA 135 (352)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh------hHhcCCchHHHHHHHH
Confidence 34556777776533332221 2222333333344445566666676777775553221 2345776655 78899
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 246 QLFETSESECSVILLWTYAVAAFALTLWITF 276 (282)
Q Consensus 246 ~~~~~~~~~~s~~l~~syl~sivtlp~w~~l 276 (282)
|.||.|.+.+|-.=..=-++-..++|+..-+
T Consensus 136 ~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~ 166 (352)
T COG3180 136 QDYGADLRLVALMQYLRVLFVVLLAPLVSRL 166 (352)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998766533222223333445554433
No 26
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=47.81 E-value=60 Score=29.57 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHhhcccHHHHHHHHHH-HcCCChhHHHHHHHHHHH
Q 023466 187 GVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVPPALAVGTIIQ-LFETSESECSVILLWTYA 264 (282)
Q Consensus 187 ~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~-~d~~~~~Vlll~~a~P~A~~~~~ia~-~~~~~~~~~s~~l~~syl 264 (282)
++|.-..+.+.-+.+.|.+.++++... + .+ .|.....-+.+..|||+-....++-. .-|.++ +...+-|..
T Consensus 82 ~w~LhLFilI~~Ll~tPs~~~Lf~~~~-~---~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa---~A~~v~S~f 154 (287)
T KOG4821|consen 82 NWRLHLFILILSLLITPSIVYLFCCAV-K---AAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNA---SALCVCSVF 154 (287)
T ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHH-h---CcchhHHHHhhheeeeecCCccccceeeeeccCccH---HHHHHHHHH
Confidence 345566677778899999998887653 2 22 45556666777889999988766544 445543 444445666
Q ss_pred HHHHHHHHHHH
Q 023466 265 VAAFALTLWIT 275 (282)
Q Consensus 265 ~sivtlp~w~~ 275 (282)
.+.++.|....
T Consensus 155 ~g~L~~~~i~~ 165 (287)
T KOG4821|consen 155 IGNLLGAFITP 165 (287)
T ss_pred HHHHhhhHHHH
Confidence 66666654443
No 27
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=43.51 E-value=1.8e+02 Score=23.83 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 023466 221 SDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTY 263 (282)
Q Consensus 221 ~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~sy 263 (282)
.++...-.+.+..++=.+..++++.|.|+.+.+...-...|+-
T Consensus 86 ~~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W~~ 128 (145)
T PF09925_consen 86 RSPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLWAL 128 (145)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHHHH
Confidence 3455555555555555888899999999999887777777743
No 28
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=43.35 E-value=2e+02 Score=24.09 Aligned_cols=46 Identities=4% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHhhcccHHHH-HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023466 230 LLQYAVPPALA-VGTIIQLFETSESECSVILLWTYAVAAFALTLWIT 275 (282)
Q Consensus 230 ll~~a~P~A~~-~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~ 275 (282)
.+.+.+|-+.. ...+|+.+|.|...++..=..=-++-++++|++..
T Consensus 108 a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~ 154 (156)
T TIGR03082 108 AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLAR 154 (156)
T ss_pred HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888876 67788889998765544322222233345665443
No 29
>COG3329 Predicted permease [General function prediction only]
Probab=39.35 E-value=1.4e+02 Score=28.55 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=34.7
Q ss_pred hhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 023466 118 KMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS 179 (282)
Q Consensus 118 k~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~ 179 (282)
.+++||.+...+.|++++++.-.| +-++..+..+-+=+...-+-|+.+|+.-.+
T Consensus 213 Esflnpal~lllggl~iGlitGe~--------g~~vl~~F~~~lFqGvL~lflL~MGm~A~r 266 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLITGEQ--------GESVLKPFFDPLFQGVLCLFLLDMGMTAGR 266 (372)
T ss_pred HHHcCchHHHHHHHHHHhheeccC--------chhhhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 456899999999999999985322 112333333333334455678888887765
No 30
>KOG3788 consensus Predicted divalent cation transporter [Inorganic ion transport and metabolism]
Probab=31.18 E-value=3.4e+02 Score=26.95 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=27.6
Q ss_pred cCChhHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHH
Q 023466 162 GEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV 241 (282)
Q Consensus 162 G~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~ 241 (282)
|+-.++.+++..|+++.. .+.--+++-.+++.++.+..|++.=||+ .++|.|..+
T Consensus 138 ~~~~~~~~llL~~SSv~t---------------a~las~vl~~lmv~vIi~srk~~iNPDN----------IatPiaASl 192 (441)
T KOG3788|consen 138 GDFDIEHSLLLCASSVAT---------------ATLASLVLGILMVVVIIGSRKYDINPDN----------IATPIAASL 192 (441)
T ss_pred CCCcHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhheeeeeeccCCCchh----------hcchhhhhh
Confidence 344556666666665543 1111233334455555555666665543 356666554
No 31
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=29.79 E-value=5.5e+02 Score=25.53 Aligned_cols=95 Identities=9% Similarity=-0.002 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccchhhhhc----cCCch-hHHHHHHHHhcCChhHHHHHHHHHHhcc-----------ccccCCCCh
Q 023466 125 TIAAIIGFVIGTISPFRKVIVG----ESAPL-RVLDSSAALVGEAAIPAMTLVIGANLLS-----------GLKRSGVGV 188 (282)
Q Consensus 125 iia~i~Glli~~~p~lr~l~~~----~~~pl-~~i~~~l~~lG~~aiPl~livlG~~L~~-----------~~~~~~~~~ 188 (282)
.-...+|++..-..+-|.++|. .-.|| ..+..+.+.++.-+-|-.==.+-+...+ ..++-+.-.
T Consensus 79 f~f~pl~~~~h~~~~s~~~vF~lsll~iiPLA~~l~~ateqls~~tg~tvGgllNAtfGnaiElii~ilALk~g~~riVq 158 (441)
T KOG1397|consen 79 FPFVPLAIIAHWFTWSKGWVFLLSLLGIIPLAERLGFATEQLSAYTGPTVGGLLNATFGNAIELIIYILALKNGKVRIVQ 158 (441)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcHHHHHhhhhccHHHHHHHHHHhhcCceEEEe
Confidence 3355666666666665566553 23577 5677777777666666422222222222 011122223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023466 189 SLIMGIIAIRYILLPLLGIVIVKAAYRFGFI 219 (282)
Q Consensus 189 ~~i~~~~~~RlillP~i~~~i~~~~~~~~~l 219 (282)
...++.+..-++++|-..+..-....|...+
T Consensus 159 ~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~F 189 (441)
T KOG1397|consen 159 GSLLGSILSNLLLVLGLSLFCGGIRRKDQRF 189 (441)
T ss_pred hhhHHHHHHHHHHHhhHHHhhcccccceeec
Confidence 5678888888888887776555443444443
No 32
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=28.41 E-value=5.1e+02 Score=24.40 Aligned_cols=103 Identities=10% Similarity=0.127 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccccccCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHH-HHHHH
Q 023466 168 AMTLVIGANLLSGLKRSGVG-VSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALA-VGTII 245 (282)
Q Consensus 168 l~livlG~~L~~~~~~~~~~-~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~-~~~ia 245 (282)
....++|..+......+... .+..+.....=.++.-++.....+.+.|.+.+ | ...-+.+++|-+.+ ...++
T Consensus 29 ~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~--d----~~TA~~~~~PGg~s~m~~la 102 (318)
T PF05145_consen 29 AGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL--D----RATAFFASMPGGLSEMVALA 102 (318)
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C----hhHHHHHcCCccHHHHHHHH
Confidence 34456666665422221111 11222223333344444444445555554443 2 23445677888777 67888
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 246 QLFETSESECSVILLWTYAVAAFALTLWITF 276 (282)
Q Consensus 246 ~~~~~~~~~~s~~l~~syl~sivtlp~w~~l 276 (282)
+.+|.|.+..+-.=..=-++-++.+|+...+
T Consensus 103 ~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~ 133 (318)
T PF05145_consen 103 EEYGADTRRVALVQSLRLLLVVLLVPFIASL 133 (318)
T ss_pred HHcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887654332111122333445555443
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=27.28 E-value=1.4e+02 Score=28.49 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHH---
Q 023466 168 AMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI--- 244 (282)
Q Consensus 168 l~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~i--- 244 (282)
+-+++.|+++.- |......++-...+..|.++-=++++.+.+++...|+++.++ +.+.+|+= -.|-++.
T Consensus 53 ~~~~~~Ga~I~~--k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~-----laiiaa~~-~~Ng~ly~al 124 (312)
T PRK12460 53 AFLLCMGAQISL--KAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSG-----LAIVAAMS-NSNGGLYAAL 124 (312)
T ss_pred HHHHHhcCeeec--cccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHH-----HHHHHHHh-cCcHHHHHHH
Confidence 346778888763 443334455566778899998888988888754444444332 22222222 2233333
Q ss_pred HHHcCCChh
Q 023466 245 IQLFETSES 253 (282)
Q Consensus 245 a~~~~~~~~ 253 (282)
+++||.+++
T Consensus 125 ~~~yG~~~d 133 (312)
T PRK12460 125 MGEFGDERD 133 (312)
T ss_pred HHHcCCHhh
Confidence 577876544
No 34
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=25.28 E-value=1.6e+02 Score=28.06 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023466 168 AMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFG 217 (282)
Q Consensus 168 l~livlG~~L~~~~~~~~~~~~~i~~~~~~RlillP~i~~~i~~~~~~~~ 217 (282)
+-+++.|+++.- |......++-...+..|.++-=++++.+.+++...|
T Consensus 53 ~~l~~~Ga~I~~--k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~G 100 (314)
T TIGR00793 53 VWFFCMGASIDL--SATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDG 100 (314)
T ss_pred HHHHHhCCeeee--cccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCC
Confidence 346778887763 333333444556678899988888888888754333
No 35
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=24.54 E-value=6.6e+02 Score=24.40 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=72.9
Q ss_pred hhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHH-HhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHHH
Q 023466 119 MIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAA-LVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAI 197 (282)
Q Consensus 119 ~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~-~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 197 (282)
+...|+++..++|+++.-.+-+ ++..-+.+.+.++ ++=-+++|+. .+.++|.+..+.. .|.+....+.
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli------~~p~~s~~y~~v~~~~vPlai~Ll--Ll~~Dlr~i~~~g---~~~l~~F~~~ 91 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI------DSPASSPVYDFVWTYLVPLAIPLL--LLSADLRRILRLG---GRLLLAFLIG 91 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc------CCCCcchHHHHHHHHHHHHHHHHH--HHHccHHHHHHhh---HHHHHHHHHH
Confidence 5678999999999999888632 1111134444433 3333344433 4566666543322 2333222221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc-ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 023466 198 RYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYA-VPPALAVGTIIQLFETSESECSVILLWTYAVAAFALT 271 (282)
Q Consensus 198 RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a-~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp 271 (282)
.+-=+++..+...+.+. .+.+| ..+..-++... .==..|.+.+++.++.+++..+..+..-++++.+-+.
T Consensus 92 --~~g~viG~~va~~l~~~-~l~~~-~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~ 162 (378)
T PF05684_consen 92 --AVGTVIGAVVAFLLFGG-FLGPE-GWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFA 162 (378)
T ss_pred --HHHHHHHHHHHHHHHhh-cccch-HHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222121 13334 33433333322 5556788999999999988888887777777665443
No 36
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=24.07 E-value=90 Score=23.85 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=22.2
Q ss_pred hHHHHHHHhhhhhhhhh---------hhhc-hhHHHHHHHHHHHhh
Q 023466 102 DKMRQRINKFTEKIDLK---------MIFA-PSTIAAIIGFVIGTI 137 (282)
Q Consensus 102 ~k~~~~~~~~~~~~~lk---------~l~n-P~iia~i~Glli~~~ 137 (282)
++++++++.+.++-|.+ .+++ |.++++.+|.+-.+.
T Consensus 16 ~~~~~~iK~li~kGNv~Ri~Ikk~~~tll~iPlt~gv~~g~i~~~~ 61 (84)
T PF14242_consen 16 EELVDKIKELIKKGNVTRIIIKKDDKTLLDIPLTAGVAAGVIGALL 61 (84)
T ss_pred HHHHHHHHHHHHhcCeEEEEEEcCCeEEEEeeeehHHHHHHHHHHH
Confidence 34455555555555543 3467 888888777776555
No 37
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=21.90 E-value=3e+02 Score=22.39 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 240 AVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIWL 280 (282)
Q Consensus 240 ~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l~~ 280 (282)
.++=+|+.+|.+...+=.+.+...++......++..+.+|+
T Consensus 16 VcaGlA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~ 56 (121)
T TIGR02978 16 VCAGLADYFGVEVWLVRILVVSALLFGGGFFVLVAYIALWL 56 (121)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34667788888764333333333333332222333455554
No 38
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=21.31 E-value=7.9e+02 Score=24.12 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhhc------ccHHHHHHHHHHHcCCChhHHHHHHH
Q 023466 219 IGSDSLYQFILLLQYA------VPPALAVGTIIQLFETSESECSVILL 260 (282)
Q Consensus 219 l~~d~~~~~Vlll~~a------~P~A~~~~~ia~~~~~~~~~~s~~l~ 260 (282)
++.||.+..+.++.-. =|.++++.+.+..-+..-++..+-+.
T Consensus 304 ~GIDPvhfGvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~~~~~~k~i~ 351 (379)
T COG1593 304 LGIDPVHFGVVFVLNLSIGLITPPVGMVLFVASAVGKVPIEAVIKAIL 351 (379)
T ss_pred hCCCceeeHHHHHHHHHhhCCCCCcchhHHHHHhhcCCCHHHHHHHHH
Confidence 3568877777666543 36788888888888877777777664
No 39
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=20.52 E-value=9.3e+02 Score=24.70 Aligned_cols=114 Identities=13% Similarity=-0.005 Sum_probs=55.7
Q ss_pred hhhhchhHHHHH-HHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHHH
Q 023466 118 KMIFAPSTIAAI-IGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIA 196 (282)
Q Consensus 118 k~l~nP~iia~i-~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~~ 196 (282)
|.+.-|++++-+ .|+++|=. .-++ .+ -.+.+..+++..+.+.|+.+|..+.-..-. + ..+.+.....
T Consensus 25 ~rl~~p~ilg~ilaGillGP~--~lg~-----i~---~~~~i~~laelGvv~LLF~iGLel~~~~l~-~-~~~~~~~~g~ 92 (601)
T PRK03659 25 QRLGIGAVLGYLLAGIAIGPW--GLGF-----IS---DVDEILHFSELGVVFLMFIIGLELNPSKLW-Q-LRRSIFGVGA 92 (601)
T ss_pred HHhCCChHHHHHHHHHHhccc--cccC-----CC---cHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-H-HHHHHHHHHH
Confidence 555567777764 46665421 1000 00 124567889999999999999987631101 1 1223333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHc
Q 023466 197 IRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLF 248 (282)
Q Consensus 197 ~RlillP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~ 248 (282)
. -+++|.+....+..+ .|+ + -+....+.+..+...+|+..-++.++.
T Consensus 93 ~-~v~~t~~~~~~~~~~--~g~-~-~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 93 A-QVLLSAAVLAGLLML--TDF-S-WQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred H-HHHHHHHHHHHHHHH--Hcc-C-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 344554333222211 122 1 112233334444566666666666554
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.31 E-value=8.9e+02 Score=24.38 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhhhhchhHHH-HHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccCCCChhHHHHHH
Q 023466 117 LKMIFAPSTIA-AIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGII 195 (282)
Q Consensus 117 lk~l~nP~iia-~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~~~~~~~i~~~~ 195 (282)
.|.+..|.+++ ++.|+++|=.. .-+-.-.+.++.+++..+-+.|+..|..+. ++.-+...+......
T Consensus 25 ~~rl~~P~ivg~IlaGillGp~~----------lg~~~~~~~~~~la~lGli~llF~~Gle~d--~~~l~~~~~~~~~~~ 92 (558)
T PRK10669 25 ANRLRISPLVGYLLAGVLAGPFT----------PGFVADTKLAPELAELGVILLMFGVGLHFS--LKDLMAVKSIAIPGA 92 (558)
T ss_pred HHHcCCCHHHHHHHHHHhhCccc----------cccccchHHHHHHHHHHHHHHHHHhHhcCC--HHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023466 196 AIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWI 274 (282)
Q Consensus 196 ~~RlillP~i~~~i~~~~~~~~~l~-~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~ 274 (282)
..-.++.-++++++.+. ++ +-.....+....+.+.+++..-.+.++...+.+..-..+-..-+=-+++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~------~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~ 166 (558)
T PRK10669 93 IAQIAVATLLGMALSAV------LGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLV 166 (558)
T ss_pred HHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 023466 275 TFYIW 279 (282)
Q Consensus 275 ~l~l~ 279 (282)
.+..+
T Consensus 167 ~~~~l 171 (558)
T PRK10669 167 LLPAV 171 (558)
T ss_pred HHHHH
Done!