Query 023466
Match_columns 282
No_of_seqs 187 out of 909
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.0 2.7E-09 9.1E-14 99.7 12.6 138 122-278 18-156 (332)
2 2z16_A Matrix protein 1, M1; A 10.8 2E+02 0.0069 23.2 3.3 49 113-166 51-99 (165)
3 1nov_D Nodamura virus coat pro 8.4 2.7E+02 0.0093 17.8 2.6 14 99-112 2-15 (44)
4 1tm9_A GI3844938, hypothetical 7.7 2.9E+02 0.0099 21.1 3.0 19 203-221 94-112 (137)
5 1pi7_A VPU protein, U ORF prot 6.7 80 0.0027 19.5 -0.5 16 19-34 15-30 (36)
6 2kog_A Vesicle-associated memb 6.5 4.4E+02 0.015 20.1 3.6 33 103-135 79-111 (119)
7 1m5a_B Insulin B chain; alpha 6.1 81 0.0028 18.7 -0.7 10 4-13 18-27 (30)
8 1iij_A ERBB-2 receptor protein 5.8 3.9E+02 0.013 16.2 2.3 16 122-137 7-22 (35)
9 2z2q_B Coat protein gamma; wil 5.5 4.5E+02 0.015 16.7 2.5 14 99-112 2-15 (44)
10 3hd7_A Vesicle-associated memb 4.8 7.4E+02 0.025 17.7 3.8 32 103-134 51-82 (91)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.00 E-value=2.7e-09 Score=99.72 Aligned_cols=138 Identities=7% Similarity=-0.015 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChhHHHHHHHHHHhccccccC-CCChhHHHHHHHHHHH
Q 023466 122 APSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRS-GVGVSLIMGIIAIRYI 200 (282)
Q Consensus 122 nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~aiPl~livlG~~L~~~~~~~-~~~~~~i~~~~~~Rli 200 (282)
++-.+.+++|.+++..-|- ....+ +..-..++.++|+..|.++....-+. ..++|......+.+++
T Consensus 18 ~~~~l~i~~~~~lg~~~P~---------~~~~~----~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 18 KTFSLWAALFAAAAFFAPD---------TFKWA----GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HTHHHHHHHHHHHHHHCGG---------GTGGG----GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcch---------hhhhh----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3557777777777776331 11111 12223578899999999998533221 1245667778899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023466 201 LLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 278 (282)
Q Consensus 201 llP~i~~~i~~~~~~~~~l~~d~~~~~Vlll~~a~P~A~~~~~ia~~~~~~~~~~s~~l~~syl~sivtlp~w~~l~l 278 (282)
++|++++++.++ ++.||.+...+++..++|++....+++.++|.|.+.+......+++++++++|+|..++.
T Consensus 85 i~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 85 IMPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999998875 578999999999999999999999999999999999999999999999999999998875
No 2
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=10.79 E-value=2e+02 Score=23.18 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=26.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHhhccchhhhhccCCchhHHHHHHHHhcCChh
Q 023466 113 EKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAI 166 (282)
Q Consensus 113 ~~~~lk~l~nP~iia~i~Glli~~~p~lr~l~~~~~~pl~~i~~~l~~lG~~ai 166 (282)
|++.-|.+++|..-|++-..+....|.-|.+ ..=++++++++-.|+.+.
T Consensus 51 EWlk~r~~ls~l~k~ilg~~~~~~~p~~~~~-----qrrrf~~~~l~g~g~~nn 99 (165)
T 2z16_A 51 EWLKTRPILSPLTKGILGFVFTLTVPSERGL-----QRRRFVQNALNGNGDPNN 99 (165)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHSCC----------CCHHHHHHHC---CHHH
T ss_pred HHHhcCcccchHHhhhhheEEEEeccchhhH-----HHHHHHhccccCCCCccc
Confidence 3333377899998886544444555532322 122799999998888664
No 3
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=8.43 E-value=2.7e+02 Score=17.76 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=8.9
Q ss_pred chhhHHHHHHHhhh
Q 023466 99 PFLDKMRQRINKFT 112 (282)
Q Consensus 99 ~~~~k~~~~~~~~~ 112 (282)
++|+++|+.++.-.
T Consensus 2 ~mWErVk~ilks~l 15 (44)
T 1nov_D 2 TFWERVRSILKSGL 15 (44)
T ss_pred cHHHHHHHHHHHHH
Confidence 46777777666544
No 4
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=7.69 E-value=2.9e+02 Score=21.07 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 023466 203 PLLGIVIVKAAYRFGFIGS 221 (282)
Q Consensus 203 P~i~~~i~~~~~~~~~l~~ 221 (282)
|++.+-+.++++++|++.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 5566667788899999985
No 5
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=6.67 E-value=80 Score=19.47 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=12.6
Q ss_pred hhhhhhhhheeeehhc
Q 023466 19 QVGAIYIWTYVYYVMS 34 (282)
Q Consensus 19 ~~g~i~~WT~~y~l~~ 34 (282)
.+-+|.+||.+|.-.|
T Consensus 15 lIiaIVVWtiv~ieYr 30 (36)
T 1pi7_A 15 IIIAIVVWSIVIIEGR 30 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3568999999987555
No 6
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=6.53 E-value=4.4e+02 Score=20.09 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhhhhhhhhhchhHHHHHHHHHHH
Q 023466 103 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIG 135 (282)
Q Consensus 103 k~~~~~~~~~~~~~lk~l~nP~iia~i~Glli~ 135 (282)
++++.-+++..+..+|+..--.+++.++-+++.
T Consensus 79 ~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~ 111 (119)
T 2kog_A 79 QFETSAAKLKRKYWWKNLKMMIILGVICAIILI 111 (119)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556776644444444444433
No 7
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=6.12 E-value=81 Score=18.69 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=7.2
Q ss_pred ccccchhhHH
Q 023466 4 IQCNFSLSYE 13 (282)
Q Consensus 4 ~~~~~G~~Y~ 13 (282)
.|++||..|.
T Consensus 18 vCgdRGF~~~ 27 (30)
T 1m5a_B 18 VCGERGFFYT 27 (30)
T ss_dssp HHGGGCEEEC
T ss_pred HhccCccccC
Confidence 5888887663
No 8
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.76 E-value=3.9e+02 Score=16.22 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHHHhh
Q 023466 122 APSTIAAIIGFVIGTI 137 (282)
Q Consensus 122 nP~iia~i~Glli~~~ 137 (282)
.|.+.|.++|+++.++
T Consensus 7 ~~sIaagVvglll~vi 22 (35)
T 1iij_A 7 VTFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHH
Confidence 3678888888555443
No 9
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=5.51 E-value=4.5e+02 Score=16.69 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=8.3
Q ss_pred chhhHHHHHHHhhh
Q 023466 99 PFLDKMRQRINKFT 112 (282)
Q Consensus 99 ~~~~k~~~~~~~~~ 112 (282)
++|+++++.++.-.
T Consensus 2 ~~WErVk~ilks~l 15 (44)
T 2z2q_B 2 SMWERVKSIIKSSL 15 (44)
T ss_pred cHHHHHHHHHHHHH
Confidence 35777766665443
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=4.82 E-value=7.4e+02 Score=17.67 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhhhhhhhhchhHHHHHHHHHH
Q 023466 103 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVI 134 (282)
Q Consensus 103 k~~~~~~~~~~~~~lk~l~nP~iia~i~Glli 134 (282)
++++.-+++..+..+|++.--.+++.++-+++
T Consensus 51 ~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 51 QFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555676654444444444333
Done!