Query 023467
Match_columns 282
No_of_seqs 165 out of 304
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 04:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 6.4E-41 1.4E-45 259.6 -3.3 78 181-258 1-78 (79)
2 PF09297 zf-NADH-PPase: NADH p 54.4 4.8 0.0001 26.0 0.3 30 199-229 1-30 (32)
3 PF14901 Jiv90: Cleavage induc 48.0 8.3 0.00018 31.7 0.8 18 219-236 26-43 (94)
4 KOG4846 Nuclear receptor [Sign 39.9 26 0.00056 36.2 3.0 48 177-227 130-192 (538)
5 TIGR03831 YgiT_finger YgiT-typ 32.8 23 0.00049 23.3 0.9 20 209-228 21-40 (46)
6 PRK07217 replication factor A; 30.5 26 0.00057 34.1 1.3 75 141-223 145-232 (311)
7 PRK00241 nudC NADH pyrophospha 29.3 19 0.00041 33.1 0.1 36 195-231 93-128 (256)
8 PRK06424 transcription factor; 26.3 32 0.0007 29.6 1.0 25 211-235 14-39 (144)
9 COG2816 NPY1 NTP pyrophosphohy 25.1 24 0.00051 33.9 -0.0 35 195-230 105-139 (279)
10 PLN02667 inositol polyphosphat 23.4 43 0.00093 31.7 1.3 39 131-170 84-122 (286)
11 TIGR00270 conserved hypothetic 23.3 41 0.00088 29.1 1.1 21 209-229 13-33 (154)
12 PF13240 zinc_ribbon_2: zinc-r 21.9 34 0.00073 21.3 0.2 10 219-228 12-21 (23)
13 PF12108 SF3a60_bindingd: Spli 20.6 35 0.00077 22.6 0.1 12 190-201 15-26 (28)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=6.4e-41 Score=259.62 Aligned_cols=78 Identities=68% Similarity=1.193 Sum_probs=63.2
Q ss_pred CcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccCC
Q 023467 181 RCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258 (282)
Q Consensus 181 ~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q~ 258 (282)
+||||||++||+.+|.||+||||||.|+||++|+++|+.+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=54.40 E-value=4.8 Score=26.03 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=17.5
Q ss_pred hhccchhhhccCcEEeECCchhhhhhhhccC
Q 023467 199 RRHKVCEFHSKASTVIAAGLTQRFCQQCSRF 229 (282)
Q Consensus 199 RRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRF 229 (282)
++||-|.. .-++++.+.+...|-|+.|+..
T Consensus 1 ~~~rfC~~-CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 1 RNHRFCGR-CGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp HTTSB-TT-T--BEEE-SSSS-EEESSSS-E
T ss_pred CCCcccCc-CCccccCCCCcCEeECCCCcCE
Confidence 35666766 5677777777888888888764
No 3
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=48.03 E-value=8.3 Score=31.75 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=15.0
Q ss_pred hhhhhhhhccCccccccc
Q 023467 219 TQRFCQQCSRFHLLSEFD 236 (282)
Q Consensus 219 ~qRFCQQCsRFH~LsEFD 236 (282)
.-|+|++|+.+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999877654
No 4
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=39.86 E-value=26 Score=36.17 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCCCcccCCCch--------hhccchhhhhh-------ccchhhhccCcEEeECCchhhhhhhhc
Q 023467 177 ANIPRCQAEGCSA--------DLTHAKHYHRR-------HKVCEFHSKASTVIAAGLTQRFCQQCS 227 (282)
Q Consensus 177 ~~~p~CQVeGC~a--------DLs~aK~YhRR-------hRVCE~HsKAp~Vvv~G~~qRFCQQCs 227 (282)
.....|+|-|=.| ...++|.|||| ||.| .|+..-.+--.-.--||+|.
T Consensus 130 ~~~~lCkVCgDkASGfHYGV~aCEGCKGFFRRSIQqkI~YrrC---lk~e~C~I~R~nRNRCQ~CR 192 (538)
T KOG4846|consen 130 KAISLCKVCGDKASGFHYGVTACEGCKGFFRRSIQQKIDYRRC---LKQEVCEIKRENRNRCQYCR 192 (538)
T ss_pred ceeEeehhhccccccceeceeecccchHHHHHHHHHhhhHHHH---hhhhceehhhhccchhhhhh
Confidence 3567798833222 24566999998 4555 67777777666677899995
No 5
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=32.81 E-value=23 Score=23.26 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=17.6
Q ss_pred cCcEEeECCchhhhhhhhcc
Q 023467 209 KASTVIAAGLTQRFCQQCSR 228 (282)
Q Consensus 209 KAp~Vvv~G~~qRFCQQCsR 228 (282)
+...+++.++...+|.+||.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 66778899999999999995
No 6
>PRK07217 replication factor A; Reviewed
Probab=30.49 E-value=26 Score=34.05 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=46.3
Q ss_pred CccceeecCCccccCCCchh-hhhcccCCCC----CCCCCCCCCCCcccCCCchhhccchhhhhhccchhhhccCc----
Q 023467 141 ASRIGLNLGGRTYFSSADDD-FVSRLYRRPR----PGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKAS---- 211 (282)
Q Consensus 141 ~~~i~L~LG~r~yf~~~e~~-~~~~~~kr~R----~~~~g~~~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp---- 211 (282)
.+++.||||+.+-.+..+++ .+....-... ...+|+.--.+|-.+||+.-|+. -.|+.|=+..
T Consensus 145 ~G~~~lnlg~~t~I~~~de~IeV~~~~vei~G~lVdi~~GsglI~rCP~~~C~Rvl~~--------g~C~~HG~ve~~~D 216 (311)
T PRK07217 145 QGRFSVKLNRTTSIEELDEDIEVGDDEVEVEGALVDIQSGSGLIKRCPEEDCTRVLQN--------GRCSEHGKVEGEFD 216 (311)
T ss_pred CCEEEEEeCCceEEEeCCCCccccCccccceeEEEEEeCCCCCeecCCccccCccccC--------CCCCCCCCcCCcee
Confidence 48899999987766542221 1111100011 24567778899999999999953 3799997654
Q ss_pred ----EEeECCchhhhh
Q 023467 212 ----TVIAAGLTQRFC 223 (282)
Q Consensus 212 ----~Vvv~G~~qRFC 223 (282)
.|+-+|.....|
T Consensus 217 Lrik~vlDDGt~~~~~ 232 (311)
T PRK07217 217 LRIKGVLDDGEEVQEV 232 (311)
T ss_pred eEEEEEEECCCCeEEE
Confidence 344466654443
No 7
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=29.26 E-value=19 Score=33.06 Aligned_cols=36 Identities=14% Similarity=0.378 Sum_probs=27.7
Q ss_pred hhhhhhccchhhhccCcEEeECCchhhhhhhhccCcc
Q 023467 195 KHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231 (282)
Q Consensus 195 K~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~ 231 (282)
-.+|++||-|..+-....+ ..+...|.|..|+..|-
T Consensus 93 ~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 93 AEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHhhcCccccccCCCCee-cCCceeEECCCCCCEEC
Confidence 5789999999997776554 45556788999997663
No 8
>PRK06424 transcription factor; Provisional
Probab=26.34 E-value=32 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=20.7
Q ss_pred cEEeECCchhhhhhhhccC-cccccc
Q 023467 211 STVIAAGLTQRFCQQCSRF-HLLSEF 235 (282)
Q Consensus 211 p~Vvv~G~~qRFCQQCsRF-H~LsEF 235 (282)
-.|+|+|.+..-|..|.+| .++..+
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~~v~~~ 39 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGTPVIEH 39 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCCccccc
Confidence 5789999999999999998 445555
No 9
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=25.05 E-value=24 Score=33.89 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=29.9
Q ss_pred hhhhhhccchhhhccCcEEeECCchhhhhhhhccCc
Q 023467 195 KHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFH 230 (282)
Q Consensus 195 K~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH 230 (282)
-.++++||.|.. +-.++...+|...|-|++|+.-|
T Consensus 105 ~~w~~~~RFCg~-CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 105 LEWYRSHRFCGR-CGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHhhCcCCCC-CCCcCccccCceeeeCCCCCCcc
Confidence 467899999987 67888889999999999998654
No 10
>PLN02667 inositol polyphosphate multikinase
Probab=23.41 E-value=43 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.489 Sum_probs=24.8
Q ss_pred cccCCCCCCcCccceeecCCccccCCCchhhhhcccCCCC
Q 023467 131 EEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPR 170 (282)
Q Consensus 131 e~~~~~~d~~~~~i~L~LG~r~yf~~~e~~~~~~~~kr~R 170 (282)
|.+..++..- ..+.||||.|+|...+.++-..+..++.+
T Consensus 84 eDLt~g~~~P-cVlDlKmG~rt~~~~as~eK~~r~~~k~~ 122 (286)
T PLN02667 84 EDLLAGYTKP-CVMDVKMGSRTWYPEASEEYIQKCLKKDR 122 (286)
T ss_pred hHHhcCCCCC-eEEEEEeccEecCCCCCHHHHHHHHhhcc
Confidence 4454555444 68899999999987765444444444433
No 11
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=23.28 E-value=41 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=18.8
Q ss_pred cCcEEeECCchhhhhhhhccC
Q 023467 209 KASTVIAAGLTQRFCQQCSRF 229 (282)
Q Consensus 209 KAp~Vvv~G~~qRFCQQCsRF 229 (282)
+.-.|.|+|....-|..|.+|
T Consensus 13 ~~~~v~iega~l~vC~~C~k~ 33 (154)
T TIGR00270 13 KGFKIVIEGSEMTVCGECRKF 33 (154)
T ss_pred CCeEEEEcCeEEehhhhHHhc
Confidence 456889999999999999997
No 12
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.87 E-value=34 Score=21.27 Aligned_cols=10 Identities=30% Similarity=1.105 Sum_probs=8.0
Q ss_pred hhhhhhhhcc
Q 023467 219 TQRFCQQCSR 228 (282)
Q Consensus 219 ~qRFCQQCsR 228 (282)
..+||.+||.
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 3689999985
No 13
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.56 E-value=35 Score=22.63 Aligned_cols=12 Identities=50% Similarity=0.778 Sum_probs=7.8
Q ss_pred hhccchhhhhhc
Q 023467 190 DLTHAKHYHRRH 201 (282)
Q Consensus 190 DLs~aK~YhRRh 201 (282)
.|..+|+||+||
T Consensus 15 rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 15 RLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhC
Confidence 356677888876
Done!