Query 023467
Match_columns 282
No_of_seqs 165 out of 304
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6.4E-44 2.2E-48 283.4 -2.3 88 174-261 3-90 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 4.8E-43 1.7E-47 275.5 -3.8 84 178-261 2-85 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 3.5E-33 1.2E-37 206.3 0.4 59 178-236 2-60 (60)
4 2jrw_A Cyclic extended PEP.1; 36.5 20 0.00067 22.6 1.9 17 98-114 8-24 (26)
5 1vk6_A NADH pyrophosphatase; 1 29.4 14 0.00047 32.5 0.5 36 195-231 101-136 (269)
6 3nrd_A Histidine triad (HIT) p 18.5 49 0.0017 26.0 1.7 22 114-135 27-48 (135)
7 1gh9_A 8.3 kDa protein (gene M 17.5 35 0.0012 25.4 0.6 28 203-233 6-33 (71)
8 4a6q_A Histone deacetylase com 16.7 26 0.00089 29.5 -0.3 29 198-237 20-48 (143)
9 2w0t_A Lethal(3)malignant brai 13.3 50 0.0017 22.9 0.4 28 222-249 8-36 (43)
10 2dt7_A Splicing factor 3A subu 13.1 45 0.0016 22.2 0.2 12 190-201 18-29 (38)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6.4e-44 Score=283.36 Aligned_cols=88 Identities=63% Similarity=1.085 Sum_probs=80.3
Q ss_pred CCCCCCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHh
Q 023467 174 AGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRR 253 (282)
Q Consensus 174 ~g~~~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RR 253 (282)
+|+++.++||||||++||+.+|.||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCC
Q 023467 254 RKSQQQPT 261 (282)
Q Consensus 254 RK~q~~A~ 261 (282)
||+++++.
T Consensus 83 Rk~~~~~~ 90 (94)
T 1ul4_A 83 RKSSGESG 90 (94)
T ss_dssp CSCCCC--
T ss_pred ccCCCCcC
Confidence 99998864
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=4.8e-43 Score=275.46 Aligned_cols=84 Identities=46% Similarity=0.957 Sum_probs=79.7
Q ss_pred CCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccC
Q 023467 178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257 (282)
Q Consensus 178 ~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q 257 (282)
+.++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+.
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCC
Q 023467 258 QQPT 261 (282)
Q Consensus 258 ~~A~ 261 (282)
++..
T Consensus 82 ~~~~ 85 (88)
T 1ul5_A 82 VDKG 85 (88)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7654
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=3.5e-33 Score=206.31 Aligned_cols=59 Identities=63% Similarity=1.171 Sum_probs=57.2
Q ss_pred CCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccc
Q 023467 178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236 (282)
Q Consensus 178 ~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD 236 (282)
+.++||||||++||+.+|+|||||||||.|+||++|+|+|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 56899999999999999999999999999999999999999999999999999999998
No 4
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=36.47 E-value=20 Score=22.64 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=11.0
Q ss_pred CcccCCCCcCCCCCCCc
Q 023467 98 PRAYTSASSYAPTHHSM 114 (282)
Q Consensus 98 pr~~~s~~~y~~~~~~~ 114 (282)
|..|-|+.-|.|||++.
T Consensus 8 penyfserpyhppppc~ 24 (26)
T 2jrw_A 8 PENYFSERPYHPPPPCX 24 (26)
T ss_dssp SSSSCCSSSCCSCSCC-
T ss_pred chhhcccCCCCCCCCCC
Confidence 34455666789888764
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=29.42 E-value=14 Score=32.52 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=28.2
Q ss_pred hhhhhhccchhhhccCcEEeECCchhhhhhhhccCcc
Q 023467 195 KHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231 (282)
Q Consensus 195 K~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~ 231 (282)
..++++++-|..+- ++.+..++...+.|..|+..|-
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 56888999999854 5566678888999999987653
No 6
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=18.50 E-value=49 Score=26.02 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=16.8
Q ss_pred ccccccCCCceeEeecccccCC
Q 023467 114 MLSIDAASGGYFMIPKTEEVSR 135 (282)
Q Consensus 114 ~~s~~~~~~~~~~~~k~e~~~~ 135 (282)
+|..||...|++||||++.+..
T Consensus 27 ~l~~~~~~p~~lvVpkr~h~~~ 48 (135)
T 3nrd_A 27 RLMNDRRWPWLILVPQRADIKE 48 (135)
T ss_dssp EEESCTTSCEEEEEECCTTCCS
T ss_pred EEcCCCCCCEEEEEcCccccCC
Confidence 5666777789999999776543
No 7
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=17.50 E-value=35 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=22.0
Q ss_pred chhhhccCcEEeECCchhhhhhhhccCcccc
Q 023467 203 VCEFHSKASTVIAAGLTQRFCQQCSRFHLLS 233 (282)
Q Consensus 203 VCE~HsKAp~Vvv~G~~qRFCQQCsRFH~Ls 233 (282)
.|+ +.+..++-+|....-|+ ||+-+.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 477 66668888899999998 99876554
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=16.70 E-value=26 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=22.8
Q ss_pred hhhccchhhhccCcEEeECCchhhhhhhhccCcccccccc
Q 023467 198 HRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDN 237 (282)
Q Consensus 198 hRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg 237 (282)
--|.++|+.+++ -||.+=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 358889998665 37766679999999974
No 9
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=13.28 E-value=50 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=22.3
Q ss_pred hhhhhccCcccccc-ccccchHHHHHHHH
Q 023467 222 FCQQCSRFHLLSEF-DNGKRSCRKRLADH 249 (282)
Q Consensus 222 FCQQCsRFH~LsEF-Dg~KRSCRrrLarH 249 (282)
-|.+|+++=+-..| -..||=|-...++.
T Consensus 8 ~CE~CG~~g~~~~F~~ksKRFCS~~Carr 36 (43)
T 2w0t_A 8 VCEMCGIVGTREAFFSKTKRFCSVSCSRS 36 (43)
T ss_dssp ECTTTCCEEETTTSCTTTSSSSSHHHHHH
T ss_pred hhhhhcCcchhhhhccCCcceechhhhCc
Confidence 48999998888888 78999887766643
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.07 E-value=45 Score=22.17 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=7.6
Q ss_pred hhccchhhhhhc
Q 023467 190 DLTHAKHYHRRH 201 (282)
Q Consensus 190 DLs~aK~YhRRh 201 (282)
.|...|+||+||
T Consensus 18 rlk~Ike~Hrr~ 29 (38)
T 2dt7_A 18 RLKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhC
Confidence 355567777776
Done!