BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023468
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NZ63|CI078_HUMAN Uncharacterized protein C9orf78 OS=Homo sapiens GN=C9orf78 PE=1
           SV=1
          Length = 289

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 29/264 (10%)

Query: 38  RLALEEIKFLQKQRERKSGIPAIP-----------SALQSAAAAGGGGLT---KVSEKNE 83
           RL LEE + +Q  R+R +G+ A+            + +        GG+    K+ E+ +
Sbjct: 28  RLKLEETREVQNLRKRPNGVSAVALLVGEKVQEETTLVDDPFQMKTGGMVDMKKLKERGK 87

Query: 84  GD-GEKDELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDVNDRVENDLKHAEDE 142
               E+++L L  +F+ ET    ED +M+KY+E EL K++G  I  ++  +   K+AED 
Sbjct: 88  DKISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKG--IVEHEEQKVKPKNAEDC 145

Query: 143 LYKIPEHLKVK--KRNSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAK-KLLQEKRLMG 199
           LY++PE+++V   K+  E  S Q  +GI EV L I+ K+KNI  TE AK +LL E++   
Sbjct: 146 LYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKK 205

Query: 200 RAKSDFSIPSSYSADYFQRGRDYAEKL------RREHPELYKDR-GSQDDGAGSRPTDNS 252
           +      +P++ + +Y Q  R Y E+L       +E P+    R G  +     R   N 
Sbjct: 206 KDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNR 265

Query: 253 TDAAGSRQAATDQFMLERFRKRER 276
              A  +  ATD +  E+F+K  R
Sbjct: 266 KRPANEK--ATDDYHYEKFKKMNR 287


>sp|Q3TQI7|CI078_MOUSE Uncharacterized protein C9orf78 homolog OS=Mus musculus PE=1 SV=2
          Length = 289

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 133/264 (50%), Gaps = 29/264 (10%)

Query: 38  RLALEEIKFLQKQRERKSGIPA----IPSALQ----------SAAAAGGGGLTKVSEKNE 83
           RL LEE + +Q  R+R +G+ A    +   +Q            A  G   + K+ E+ +
Sbjct: 28  RLKLEETREVQNLRKRPNGVSAAALLVGEKVQEETTLVDDPFQMATGGMVDMKKLKERGK 87

Query: 84  GD-GEKDELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDVNDRVENDLKHAEDE 142
               E+++L L  +F+ ET    ED +M+KY+E EL K++G  I   +  +   K+AED 
Sbjct: 88  DKVSEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKG--IVEQEEQKAKPKNAEDC 145

Query: 143 LYKIPEHLKVK--KRNSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAK-KLLQEKRLMG 199
           LY++PE+++V   K+  E  S Q  +GI EV L I+ K+KNI  TE AK +LL E++   
Sbjct: 146 LYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKK 205

Query: 200 RAKSDFSIPSSYSADYFQRGRDYAEKL------RREHPELYKDR-GSQDDGAGSRPTDNS 252
           +      +P++ + +Y Q  R Y E+L       +E P+    R G  +     R   N 
Sbjct: 206 KDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNR 265

Query: 253 TDAAGSRQAATDQFMLERFRKRER 276
              A  +  ATD +  E+F+K  R
Sbjct: 266 KRPANEK--ATDDYHYEKFKKMNR 287


>sp|Q5RC87|CI078_PONAB Uncharacterized protein C9orf78 homolog OS=Pongo abelii PE=2 SV=1
          Length = 289

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 29/264 (10%)

Query: 38  RLALEEIKFLQKQRERKSGIPAIP-----------SALQSAAAAGGGGLT---KVSEKNE 83
           RL LEE + +Q  R+R +G+ A+            + +        GG+    K+ E+ +
Sbjct: 28  RLKLEETREVQNLRKRPNGVSAVALLVGEKVQEETTLVDDPFQMKTGGMVDMKKLKERGK 87

Query: 84  GD-GEKDELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDVNDRVENDLKHAEDE 142
               E+++L L  +F+ ET    ED +M+KY+E EL K++G  I  ++  +   K+AED 
Sbjct: 88  DKISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKG--IVEHEEQKVKPKNAEDC 145

Query: 143 LYKIPEHLKVK--KRNSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAK-KLLQEKRLMG 199
           LY++PE+++V   K+  E  S Q  +GI EV   I+ K+KNI  TE AK +LL E++   
Sbjct: 146 LYELPENIRVSSAKKTEEMLSNQMLSGIPEVDQGIDAKIKNIISTEDAKARLLAEQQNKK 205

Query: 200 RAKSDFSIPSSYSADYFQRGRDYAEKL------RREHPELYKDR-GSQDDGAGSRPTDNS 252
           +      +P++ + +Y Q  R Y E+L       +E P+    R G  +     R   N 
Sbjct: 206 KDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNR 265

Query: 253 TDAAGSRQAATDQFMLERFRKRER 276
              A  +  ATD +  E+F+K  R
Sbjct: 266 KRPANEK--ATDDYHYEKFKKMNR 287


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.127    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,149,519
Number of Sequences: 539616
Number of extensions: 4838902
Number of successful extensions: 29028
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 748
Number of HSP's that attempted gapping in prelim test: 26046
Number of HSP's gapped (non-prelim): 2766
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)