Query 023468
Match_columns 282
No_of_seqs 138 out of 157
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3345 Uncharacterized conser 100.0 1.6E-72 3.5E-77 504.9 11.2 257 7-277 4-274 (275)
2 PF07052 Hep_59: Hepatocellula 100.0 4E-35 8.7E-40 237.0 5.5 98 95-193 1-104 (104)
3 KOG1664 Vacuolar H+-ATPase V1 21.1 55 0.0012 30.2 1.5 14 108-121 11-24 (220)
4 KOG1891 Proline binding protei 19.3 75 0.0016 29.9 2.0 46 161-222 64-109 (271)
5 TIGR00061 L21 ribosomal protei 15.7 60 0.0013 26.4 0.4 14 6-19 73-86 (101)
6 CHL00075 rpl21 ribosomal prote 12.6 83 0.0018 25.9 0.4 14 6-19 76-89 (108)
7 PRK05573 rplU 50S ribosomal pr 11.6 92 0.002 25.3 0.4 14 6-19 74-87 (103)
8 PRK12278 50S ribosomal protein 10.1 1.1E+02 0.0024 28.3 0.4 14 6-19 74-87 (221)
9 PRK05340 UDP-2,3-diacylglucosa 9.7 1.6E+02 0.0035 26.4 1.3 22 260-281 117-138 (241)
10 TIGR01615 A_thal_3542 uncharac 8.7 2.8E+02 0.0061 23.8 2.3 50 162-219 71-122 (131)
No 1
>KOG3345 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.6e-72 Score=504.88 Aligned_cols=257 Identities=42% Similarity=0.598 Sum_probs=212.5
Q ss_pred ccccccccccccCCcchhhccCCCCchHHHHhhcHHHHHHHHHhhccCCCcccccccccccccc--------CCCCcccc
Q 023468 7 QKKEKKKNFRKRSYEEEEETTNKLSDDEEERRLALEEIKFLQKQRERKSGIPAIPSALQSAAAA--------GGGGLTKV 78 (282)
Q Consensus 7 ~~~kkkK~~RkR~~~~d~e~~~~~~e~eee~~~~leeikelQKlR~R~~GI~a~~la~g~~~~~--------g~g~~~~~ 78 (282)
.|+|.+..+++|...++++.. ++++++.+++|+||++||+||.|++||+...|++|.+.++ +||++.+.
T Consensus 4 ~frk~~~k~~~rk~l~~~~~~---~eEeeerrl~leeikelQrlReRknGvs~v~lavgeeala~~d~~qm~~Ggmv~~k 80 (275)
T KOG3345|consen 4 IFRKVKFKIQKRKNLEDDDVA---AEEEEERRLALEEIKELQRLRERKNGVSEVELAVGEEALALEDPFQMKTGGMVDMK 80 (275)
T ss_pred chhhhHHHHHHhhcchhhhhh---hhhHHHHHhhHHHHHHHHHHHhccCCcchhhhhhhhhhhhccCchhcccCcceehH
Confidence 455666667777766555422 5567788999999999999999999999999999974432 66666554
Q ss_pred ccccCCCccc-hhhhhhcchhhhccccCcchhHHHHHHHHHHHhhCCCCCCCccccccccchhhhhhcCCcccccc--cc
Q 023468 79 SEKNEGDGEK-DELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDVNDRVENDLKHAEDELYKIPEHLKVK--KR 155 (282)
Q Consensus 79 ~~k~~~~~e~-~~~~l~~~Ft~eT~~~DeD~hMmkYIE~eLaKRk~~~~~~~~~~~~~~~~~~~~Ly~~pe~l~v~--kr 155 (282)
..+..+..+. ..-+|+.+|+++|+.+|+|++||+|||++|+||+|..+.+.+.+.+.+++++||||++|+||+++ ++
T Consensus 81 K~k~~~mkeas~eqdlgtqFs~ET~~rdEdeem~KYIeqeLqkrkg~~~~e~eeqk~k~~naED~Ly~lpdhlk~ssskk 160 (275)
T KOG3345|consen 81 KLKERGMKEASEEQDLGTQFSAETNRRDEDEEMMKYIEQELQKRKGTSIVEHEEQKNKPKNAEDCLYELPDHLKVSSSKK 160 (275)
T ss_pred HhhhhhhhHHHHhhhhhHHHHHHHhcccccHHHHHHHHHHHHHhhccchhhhhhhhcccCCHHHHHHhhhhhhccccccc
Confidence 4443332222 23369999999999999999999999999999999888888888899999999999999999998 88
Q ss_pred cccccccccccCCccccCChhHHhhcHHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcchhhHHHHHhhCccccc
Q 023468 156 NSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRGRDYAEKLRREHPELYK 235 (282)
Q Consensus 156 ~~e~~s~~mlsgI~EVDLGieaKlkNIe~TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~r~~~~~~~~~~~~~~~ 235 (282)
++||+|+|||+|||||||||++||+||++||+|||+|+++++++++++++|||+|||||||||||||++.+.+.
T Consensus 161 s~EmlS~qml~GIpEVdLgI~~kikNI~eTE~aKrlLqe~~~~~~~g~~~~ipt~~a~ny~qr~rf~~e~~~~~------ 234 (275)
T KOG3345|consen 161 SEEMLSNQMLSGIPEVDLGIDAKIKNIEETEDAKRLLQEQQNKKKDGETSFIPTNMAVNYVQRNRFYHEELNRD------ 234 (275)
T ss_pred hHHHHHHHHHcCCcccccchhhhhhhHHhhHHHHHHHHHHHhccCCCCCCCCccchhhhHHHhhhhhHHHhccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998652
Q ss_pred ccCCCCCCCCCCCCCCCC---CCCCCCCCcchHHHHHHHHHHHHh
Q 023468 236 DRGSQDDGAGSRPTDNST---DAAGSRQAATDQFMLERFRKRERH 277 (282)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~---~~~~~~~~ATDd~~~erFrK~~r~ 277 (282)
+..++ ..+.++.+ ..++.+++|||||||||||||+|+
T Consensus 235 ----r~~d~-e~~ep~~s~~~~~np~~~~atddyhyekfrk~~rr 274 (275)
T KOG3345|consen 235 ----RQADT-EKAEPSTSPSTNNNPDRQAATDDYHYEKFRKRERR 274 (275)
T ss_pred ----hhccc-cccCCCCCccccCChhhhhhhhHHHHHHHHHHhcc
Confidence 11111 22222222 244669999999999999999994
No 2
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=100.00 E-value=4e-35 Score=236.99 Aligned_cols=98 Identities=48% Similarity=0.686 Sum_probs=84.6
Q ss_pred cchhhhccccCcchhHHHHHHHHHHHhhCCCCCC------CccccccccchhhhhhcCCcccccccccccccccccccCC
Q 023468 95 DTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDV------NDRVENDLKHAEDELYKIPEHLKVKKRNSEESSTQWTTGI 168 (282)
Q Consensus 95 ~~Ft~eT~~~DeD~hMmkYIE~eLaKRk~~~~~~------~~~~~~~~~~~~~~Ly~~pe~l~v~kr~~e~~s~~mlsgI 168 (282)
++|++|||++|||+|||+|||++|++|++..... .......+.+..++||.+|++|+ .++.++++|++|||||
T Consensus 1 ~~F~~qT~~~d~DkhM~~YIE~eL~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~-~~~~~~~~s~~ml~gI 79 (104)
T PF07052_consen 1 DRFTAQTGQRDVDKHMMKYIEEELAKRKGRAAESDAEQSDSESSANNSDPPEDELYRLPEHLK-AKRSEEMLSNQMLGGI 79 (104)
T ss_pred CcccccccchhHHHHHHHHHHHHHHHhhccCcccccccccccccccccCcHHHHHHhCcHHhh-cccccccccHHHhcCC
Confidence 5899999999999999999999999999976211 12233455667789999999999 6667899999999999
Q ss_pred ccccCChhHHhhcHHHHHHHHHHHH
Q 023468 169 AEVQLPIEYKLKNIEETEAAKKLLQ 193 (282)
Q Consensus 169 ~EVDLGieaKlkNIe~TE~AKr~L~ 193 (282)
|||||||++||+||++||+|||.|+
T Consensus 80 ~EVdLg~eaklkNIe~TE~Akr~ll 104 (104)
T PF07052_consen 80 PEVDLGIEAKLKNIERTEKAKRRLL 104 (104)
T ss_pred ceecCcHHHHHhhHHHHHHHHHhcC
Confidence 9999999999999999999998774
No 3
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=21.15 E-value=55 Score=30.21 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHh
Q 023468 108 PNMLKYVEQELAKK 121 (282)
Q Consensus 108 ~hMmkYIE~eLaKR 121 (282)
.|||+||++|-..+
T Consensus 11 ~~M~aFI~qEA~EK 24 (220)
T KOG1664|consen 11 KHMVAFIRQEAEEK 24 (220)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999886443
No 4
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=19.34 E-value=75 Score=29.90 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=32.3
Q ss_pred ccccccCCccccCChhHHhhcHHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcchhh
Q 023468 161 STQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRGRDY 222 (282)
Q Consensus 161 s~~mlsgI~EVDLGieaKlkNIe~TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~r~~ 222 (282)
..+-++||+-+-|+ .|+.-+....-+++.-+|++.||.|.-|||-|
T Consensus 64 ~~~~~~~~g~~a~~----------------slq~~~s~~~~sedlPLPpgWav~~T~~grkY 109 (271)
T KOG1891|consen 64 RFQSLQTLGSEALM----------------SLQQYRSSCDCSEDLPLPPGWAVEFTTEGRKY 109 (271)
T ss_pred Ccchhhccchhhhh----------------hhhhccccCCCcccCCCCCCcceeeEecCcee
Confidence 35667777766555 33334444556777789999999999999954
No 5
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=15.66 E-value=60 Score=26.39 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.7
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|+.|+||+||++.
T Consensus 73 vfK~krrK~y~r~~ 86 (101)
T TIGR00061 73 VYKYRRRKHSRKKQ 86 (101)
T ss_pred EEEeCCCCCccCCC
Confidence 45558889999876
No 6
>CHL00075 rpl21 ribosomal protein L21
Probab=12.62 E-value=83 Score=25.92 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=10.8
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|+.|+||+||++.
T Consensus 76 vfK~krRK~yrrk~ 89 (108)
T CHL00075 76 VYKMRPKKKTRKKQ 89 (108)
T ss_pred EEEeCCCCCccCCC
Confidence 45568889999986
No 7
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=11.57 E-value=92 Score=25.31 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.7
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++|+||+||++.
T Consensus 74 vfK~krRK~y~r~~ 87 (103)
T PRK05573 74 VFKYKRRKNYRKKQ 87 (103)
T ss_pred EEEEcCCCCccccC
Confidence 45667888999876
No 8
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=10.12 E-value=1.1e+02 Score=28.29 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.5
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++++||+||++.
T Consensus 74 vfK~krRK~yrrk~ 87 (221)
T PRK12278 74 HFKKRRRQSSRRTK 87 (221)
T ss_pred EEEeCCCCCcccCC
Confidence 45557788999887
No 9
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=9.70 E-value=1.6e+02 Score=26.40 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCcchHHHHHHHHHHHHhhhhc
Q 023468 260 QAATDQFMLERFRKRERHRVMR 281 (282)
Q Consensus 260 ~~ATDd~~~erFrK~~r~~~~~ 281 (282)
...|||..|.+||+..|+.+++
T Consensus 117 ~~~~~d~~y~~~r~~~r~~~~~ 138 (241)
T PRK05340 117 TLCTDDKAYQRFRRKVRNPWLQ 138 (241)
T ss_pred ccccCCHHHHHHHHHHhCHHHH
Confidence 3458999999999999987654
No 10
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=8.74 E-value=2.8e+02 Score=23.76 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=38.7
Q ss_pred cccccCCccccCChhHHhhcHHH--HHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcc
Q 023468 162 TQWTTGIAEVQLPIEYKLKNIEE--TEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRG 219 (282)
Q Consensus 162 ~~mlsgI~EVDLGieaKlkNIe~--TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~ 219 (282)
.++|..||+|=.|-..+|+-|.. -++||+.|.+... .+|+=--..|+|..
T Consensus 71 ~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~Slk~~gm--------hlPPWRk~~ym~aK 122 (131)
T TIGR01615 71 KRLLESLPEVFVGTTERLRQLVRLMCDAAKKSLKKKGM--------PLPPWRKNRYMQSK 122 (131)
T ss_pred HHHHHhCCcceECCHHHHHHHHHHHHHHHHHHHHHcCC--------CCCCCCchHHHHHh
Confidence 46788999999999999998875 5777777765433 47888888888753
Done!