Query 023468
Match_columns 282
No_of_seqs 138 out of 157
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_O 50S ribosomal protein L 14.0 34 0.0011 26.6 -0.3 14 6-19 71-84 (100)
2 3v2d_V 50S ribosomal protein L 12.4 34 0.0012 26.7 -0.7 14 6-19 72-85 (101)
3 3r8s_R 50S ribosomal protein L 11.8 37 0.0013 26.5 -0.7 14 6-19 74-87 (103)
4 3bbo_T Ribosomal protein L21; 10.2 63 0.0022 29.3 0.2 14 6-19 198-211 (257)
5 3t5d_A Septin-7; GTP-binding p 6.8 1.4E+02 0.0049 25.5 1.0 14 261-274 257-270 (274)
6 3v26_X ORF3, ORF95, probable s 6.7 3E+02 0.01 20.7 2.6 20 104-123 10-29 (101)
7 1imu_A Hypothetical protein HI 6.5 3E+02 0.01 20.6 2.7 20 104-123 10-29 (107)
8 2ket_A Cathelicidin-6; antimic 6.4 2.5E+02 0.0085 16.6 1.6 9 268-276 3-11 (27)
9 2ywq_A Protein Y, ribosomal su 5.5 3.3E+02 0.011 20.2 2.3 18 104-121 11-28 (105)
10 4fyl_A Ribosome hibernation pr 5.4 3.5E+02 0.012 19.9 2.4 19 104-122 10-28 (95)
No 1
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=13.96 E-value=34 Score=26.65 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.8
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++|+||+||++.
T Consensus 71 vfK~krrK~yrrk~ 84 (100)
T 2zjr_O 71 IRKYKSGVQYRRRT 84 (100)
T ss_dssp EEEECSSSCCEEEE
T ss_pred EEEECCCCCCcCCC
Confidence 46668889999875
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=12.38 E-value=34 Score=26.69 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.6
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++|+||+||++.
T Consensus 72 vfK~krrK~yrrk~ 85 (101)
T 3v2d_V 72 VSKFKAKVQYRRKK 85 (101)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEECCCCCcCCCC
Confidence 45557889999875
No 3
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=11.80 E-value=37 Score=26.55 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.5
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++|+||+||++.
T Consensus 74 vfK~krrK~yrrk~ 87 (103)
T 3r8s_R 74 IVKFRRRKHYRKQQ 87 (103)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEecCCCCccCCC
Confidence 45557889999874
No 4
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=10.17 E-value=63 Score=29.32 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=11.1
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++|+||+|||+.
T Consensus 198 VFK~KRRK~yRRk~ 211 (257)
T 3bbo_T 198 VFKYKKKKNYRRNI 211 (257)
T ss_dssp EEECCTTTTCCEEE
T ss_pred EEEeCCCCCCcCCC
Confidence 45667889999987
No 5
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=6.77 E-value=1.4e+02 Score=25.51 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHHH
Q 023468 261 AATDQFMLERFRKR 274 (282)
Q Consensus 261 ~ATDd~~~erFrK~ 274 (282)
..|++.|||+||..
T Consensus 257 ~~t~~~~ye~yr~~ 270 (274)
T 3t5d_A 257 DVTNNVHYENYRSR 270 (274)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999964
No 6
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=6.67 E-value=3e+02 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.8
Q ss_pred cCcchhHHHHHHHHHHHhhC
Q 023468 104 MVEDPNMLKYVEQELAKKRG 123 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKRk~ 123 (282)
.+....+..||++.|.|=..
T Consensus 10 ie~t~alr~~ve~Kl~kL~k 29 (101)
T 3v26_X 10 VEITEALREFVTAKFAKLEQ 29 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 68889999999999987443
No 7
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=6.51 E-value=3e+02 Score=20.64 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.8
Q ss_pred cCcchhHHHHHHHHHHHhhC
Q 023468 104 MVEDPNMLKYVEQELAKKRG 123 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKRk~ 123 (282)
.+....+..||++.|.|=..
T Consensus 10 i~~t~alr~~v~~kl~kL~r 29 (107)
T 1imu_A 10 MDITPAIREHLEERLAKLGK 29 (107)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 57889999999999988433
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=6.39 E-value=2.5e+02 Score=16.59 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=5.5
Q ss_pred HHHHHHHHH
Q 023468 268 LERFRKRER 276 (282)
Q Consensus 268 ~erFrK~~r 276 (282)
|.||||.++
T Consensus 3 fkrfrkkfk 11 (27)
T 2ket_A 3 FKRFRKKFK 11 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666655
No 9
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=5.48 E-value=3.3e+02 Score=20.17 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.6
Q ss_pred cCcchhHHHHHHHHHHHh
Q 023468 104 MVEDPNMLKYVEQELAKK 121 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKR 121 (282)
.+....+..||++.|.|=
T Consensus 11 i~~t~al~~~v~~kl~kL 28 (105)
T 2ywq_A 11 LEITDAIRDYVEKKLARL 28 (105)
T ss_dssp SCCCHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHHHH
Confidence 578889999999999853
No 10
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=5.39 E-value=3.5e+02 Score=19.87 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.2
Q ss_pred cCcchhHHHHHHHHHHHhh
Q 023468 104 MVEDPNMLKYVEQELAKKR 122 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKRk 122 (282)
.+....+..||++.|.|=-
T Consensus 10 i~vt~al~~~v~~Kl~kl~ 28 (95)
T 4fyl_A 10 IDLTDSMQDYVHSKFDKLE 28 (95)
T ss_dssp SCCCHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5788899999999998743
Done!