Query 023468
Match_columns 282
No_of_seqs 138 out of 157
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 07:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j01v1 b.155.1.1 (V:1-101) Ri 11.4 29 0.0021 25.1 0.5 14 6-19 72-85 (101)
2 d1e7la1 a.140.4.1 (A:104-157) 10.2 98 0.0071 20.0 2.8 21 259-279 33-53 (54)
3 d2zjro1 b.155.1.1 (O:5-98) Rib 9.9 27 0.002 24.9 -0.1 14 6-19 67-80 (94)
4 d1k8ba_ d.241.1.1 (A:) Transla 8.5 77 0.0056 20.0 1.7 24 96-119 13-37 (52)
5 d2qamr1 b.155.1.1 (R:1-103) Ri 7.3 40 0.0029 24.4 -0.2 14 6-19 74-87 (103)
6 d2ywqa1 d.204.1.1 (A:1-95) Rib 5.0 1.8E+02 0.013 19.3 2.3 19 104-122 11-29 (95)
7 d1l4sa_ d.204.1.1 (A:) Ribosom 4.6 2.1E+02 0.016 19.6 2.6 19 104-122 9-27 (112)
8 d1f7ua3 d.67.2.1 (A:2-135) Arg 4.4 98 0.0071 22.9 0.4 16 109-124 33-48 (134)
9 d2c5ra1 a.251.1.1 (A:66-129) E 3.6 2.1E+02 0.015 18.6 1.6 15 106-120 35-49 (64)
10 d1iufa2 a.4.1.7 (A:76-141) Ars 3.1 2E+02 0.015 18.3 1.1 8 267-274 55-62 (66)
No 1
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}
Probab=11.37 E-value=29 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.6
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|+.|+||+||++.
T Consensus 72 vfK~krRK~y~R~~ 85 (101)
T d2j01v1 72 VSKFKAKVQYRRKK 85 (101)
T ss_dssp CCCCCEECCCCEEC
T ss_pred EEEEcCcCCcccCC
Confidence 45567889999875
No 2
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=10.18 E-value=98 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=16.7
Q ss_pred CCCcchHHHHHHHHHHHHhhh
Q 023468 259 RQAATDQFMLERFRKRERHRV 279 (282)
Q Consensus 259 ~~~ATDd~~~erFrK~~r~~~ 279 (282)
+++-|-.-...+|||++++++
T Consensus 33 ne~dtk~el~~kf~KQ~~K~~ 53 (54)
T d1e7la1 33 NESDTKTQLIASFKKQLRKSL 53 (54)
T ss_dssp CTTCCHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHhc
Confidence 556677788999999999764
No 3
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.91 E-value=27 Score=24.89 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.4
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|++++||+||++.
T Consensus 67 vfK~krrK~yrRk~ 80 (94)
T d2zjro1 67 IRKYKSGVQYRRRT 80 (94)
T ss_dssp EEEECSSSCCEEEE
T ss_pred EEEEcCCCCccccC
Confidence 45568888998864
No 4
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.54 E-value=77 Score=20.01 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=15.9
Q ss_pred chhhhcccc-CcchhHHHHHHHHHH
Q 023468 96 TFAQETAVM-VEDPNMLKYVEQELA 119 (282)
Q Consensus 96 ~Ft~eT~~~-DeD~hMmkYIE~eLa 119 (282)
+|..=.... -...|+++||-.||.
T Consensus 13 Nf~eI~~~L~R~p~hv~kfl~~ELg 37 (52)
T d1k8ba_ 13 NFRELAKAVNRDEEFFAKYLLKETG 37 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 555322222 356799999999994
No 5
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=40 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.2
Q ss_pred CccccccccccccC
Q 023468 6 PQKKEKKKNFRKRS 19 (282)
Q Consensus 6 ~~~~kkkK~~RkR~ 19 (282)
+|+.++||+||++.
T Consensus 74 vfK~krrk~yrr~~ 87 (103)
T d2qamr1 74 IVKFRRRKHYRKQQ 87 (103)
T ss_dssp EEEECTTSSCEEEE
T ss_pred EEEecCCCcccccC
Confidence 45557889998864
No 6
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=4.95 E-value=1.8e+02 Score=19.33 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.6
Q ss_pred cCcchhHHHHHHHHHHHhh
Q 023468 104 MVEDPNMLKYVEQELAKKR 122 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKRk 122 (282)
.+.-..|..|||+.|.+=.
T Consensus 11 ~~lt~al~~~ve~kl~kL~ 29 (95)
T d2ywqa1 11 LEITDAIRDYVEKKLARLD 29 (95)
T ss_dssp SCCCHHHHHHHHHHHHGGG
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5677889999999998743
No 7
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=4.60 E-value=2.1e+02 Score=19.64 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=16.0
Q ss_pred cCcchhHHHHHHHHHHHhh
Q 023468 104 MVEDPNMLKYVEQELAKKR 122 (282)
Q Consensus 104 ~DeD~hMmkYIE~eLaKRk 122 (282)
.+.-..|..||++.|.+-.
T Consensus 9 ~~lt~al~~~i~~kl~kl~ 27 (112)
T d1l4sa_ 9 MEITPAIRQHVADRLAKLE 27 (112)
T ss_dssp SCCCHHHHHHHHHHHHHCT
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5778899999999998743
No 8
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.37 E-value=98 Score=22.94 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHhhCC
Q 023468 109 NMLKYVEQELAKKRGK 124 (282)
Q Consensus 109 hMmkYIE~eLaKRk~~ 124 (282)
.|..||-++|++--|-
T Consensus 33 ~~R~~Ia~~L~~i~gv 48 (134)
T d1f7ua3 33 LMRNYISQELSKISGV 48 (134)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4789999999887774
No 9
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=3.61 E-value=2.1e+02 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.1
Q ss_pred cchhHHHHHHHHHHH
Q 023468 106 EDPNMLKYVEQELAK 120 (282)
Q Consensus 106 eD~hMmkYIE~eLaK 120 (282)
..++.|.|||.+-+-
T Consensus 35 te~EVmnYiEnqR~~ 49 (64)
T d2c5ra1 35 SEQEVLNYIETQRTY 49 (64)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHhH
Confidence 456789999987543
No 10
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=3.13 E-value=2e+02 Score=18.32 Aligned_cols=8 Identities=75% Similarity=1.049 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 023468 267 MLERFRKR 274 (282)
Q Consensus 267 ~~erFrK~ 274 (282)
-++|||||
T Consensus 55 WL~rFK~R 62 (66)
T d1iufa2 55 WLEGFRKR 62 (66)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
Done!