BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023469
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 120/262 (45%), Gaps = 36/262 (13%)
Query: 16 FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
D GA +FT + V++W++ G VAEW L +F R+S ++V
Sbjct: 51 LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104
Query: 74 GVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133
G PG ++I +A V + E + W++ +GQ+ G F+ V+
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRI----TEVFRGEEHWNLLDAEGQNHGPFSHVI----- 155
Query: 134 VVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS 193
+ +P + T L AP LA + + +P +A+ LAF PL + P +G QDS
Sbjct: 156 IATPAPQAST------LLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDS 208
Query: 194 EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEF- 252
L W + SKP R + W+LH+T+ ++R + +A+ ++V E + F
Sbjct: 209 P-LDWLARNRSKPERDDTLDTWILHATSQWSRQNL---------DASREQVIEHLHGAFA 258
Query: 253 QGTGLSIPLPIFRKAHRW-YRR 273
+ + P P+F AHRW Y R
Sbjct: 259 ELIDCTXPAPVFSLAHRWLYAR 280
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 42/219 (19%)
Query: 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131
+V G++SI K + G E F V + +DK W VS G S QF+ +V +
Sbjct: 105 FVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTG-SPEQFDLIVLT- 160
Query: 132 KNVVSPRFRDVTGRPPPLDLTFAPDLAV--------KLEEIPVNPCFALMLAFSEPLS-S 182
P P L D+ +LE + + +AL L +
Sbjct: 161 -------------MPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKID 207
Query: 183 IPVKGFSFQDSEVLSWAHCDSSKPGRSANSER----WVLHSTADYARTVIAQTGLQKPSE 238
+P G + + + D+ K R+ S V+H+T + T + E
Sbjct: 208 VPWAGQYITSNPCIRFVSIDNKK--RNIESSEIGPSLVIHTTVPFGVTYL---------E 256
Query: 239 ATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNIT 277
+++ V E +FQ+ + +P PI K +W R S +T
Sbjct: 257 HSIEDVQELVFQQLENILPGLPQPIATKCQKW-RHSQVT 294
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 6 ETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQ 65
+T++DG E L GA F + LA +SG K + S V
Sbjct: 274 KTNKDGKERL--AGATFLVKKDGKYLAR----KSGVATDAEKAAVDSTKSALDAAVKAYN 327
Query: 66 DGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQF 124
D +K G G +++ Q F +EW+EDKN +V L GQF
Sbjct: 328 DLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYEWVEDKNAKNVVKLISNDKGQF 386
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 22 FFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVS-KKFVNIQQDGMNK 70
FFT D LALV E E L E ++L + V+ ++ +N + D +NK
Sbjct: 151 FFTRNKADYLALVFEREDSYLGREVTLDLSQYHAVAVRRVLNTESDLVNK 200
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 109 NLWS----VSGLDGQSLGQFNGVVASDKNVVSPRF 139
NLW+ V G D SLGQF+G V PRF
Sbjct: 241 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRF 275
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 109 NLWS----VSGLDGQSLGQFNGVVASDKNVVSPRF 139
NLW+ V G D SLGQF+G V PRF
Sbjct: 241 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRF 275
>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 426
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 111 WSVSGLDGQSLGQFNGVVASDKNVVSPRF 139
+ V G D SLGQF+G V N PRF
Sbjct: 247 YDVDGTDQSSLGQFSGRVQQTFNHKVPRF 275
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 109 NLWS----VSGLDGQSLGQFNGVVASDKNVVSPRF 139
NLW+ V G D SLGQF+G V PRF
Sbjct: 312 NLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRF 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,019,179
Number of Sequences: 62578
Number of extensions: 378111
Number of successful extensions: 792
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 8
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)