BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023469
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5VYX0|RNLS_HUMAN Renalase OS=Homo sapiens GN=RNLS PE=1 SV=1
          Length = 342

 Score = 35.4 bits (80), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 42/219 (19%)

Query: 72  YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131
           +V   G++SI K    + G E  F   V +    +DK  W VS   G S  QF+ +V + 
Sbjct: 105 FVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTG-SPEQFDLIVLT- 160

Query: 132 KNVVSPRFRDVTGRPPPLDLTFAPDLAV--------KLEEIPVNPCFALMLAFSEPLS-S 182
                         P P  L    D+          +LE +  +  +AL L +       
Sbjct: 161 -------------MPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKID 207

Query: 183 IPVKGFSFQDSEVLSWAHCDSSKPGRSANSER----WVLHSTADYARTVIAQTGLQKPSE 238
           +P  G     +  + +   D+ K  R+  S       V+H+T  +  T +         E
Sbjct: 208 VPWAGQYITSNPCIRFVSIDNKK--RNIESSEIGPSLVIHTTVPFGVTYL---------E 256

Query: 239 ATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNIT 277
            +++ V E +FQ+ +     +P PI  K  +W R S +T
Sbjct: 257 HSIEDVQELVFQQLENILPGLPQPIATKCQKW-RHSQVT 294


>sp|Q3K9C8|RLMM_PSEPF Ribosomal RNA large subunit methyltransferase M OS=Pseudomonas
           fluorescens (strain Pf0-1) GN=rlmM PE=3 SV=2
          Length = 357

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 187 GFSFQDSEVLSWAHCD-SSKPGRSANS-ERWVLHSTADYARTVIAQTGL-QKPSEATLKK 243
           GF+F+  + + W  CD   KP R+A   E W+      + R  +    L  K   A +K+
Sbjct: 256 GFTFKPKQPVDWMVCDIVEKPARNAAMLEEWI---GEGHCREAVVNLKLPMKQRYAEVKR 312

Query: 244 VAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNITCRL 280
           + E +   F+  G+ + +        ++ R  +TC L
Sbjct: 313 LLERIADGFKARGIKVDIGC---KQLYHDREEVTCHL 346


>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 152 TFAPDLAVKLEEIP-VNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKP---- 206
           ++  D+ VK   +P    C+      S   S  P+KG  F   +   W HC+ S P    
Sbjct: 402 SYWTDVQVKGTSLPRALHCWDRSFHDSHKASKTPMKGCPFHLVDSCPWPHCNPSCPTIRD 461

Query: 207 ---GRSANSERWVLHSTADYARTVIAQTGLQ 234
              G+  N  ++++H   D  +TV  Q G++
Sbjct: 462 QFTGQEMNVAQFLMHMGFD-VQTVAQQQGME 491


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,403,583
Number of Sequences: 539616
Number of extensions: 4766507
Number of successful extensions: 9353
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9352
Number of HSP's gapped (non-prelim): 4
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)