Query 023469
Match_columns 282
No_of_seqs 198 out of 946
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 4.5E-53 9.7E-58 358.3 13.9 250 1-281 40-290 (331)
2 TIGR00562 proto_IX_ox protopor 99.8 1.5E-19 3.2E-24 171.0 16.2 184 72-277 218-408 (462)
3 PLN02576 protoporphyrinogen ox 99.8 1.9E-17 4.1E-22 158.2 16.9 186 71-277 231-434 (496)
4 PRK12416 protoporphyrinogen ox 99.7 1.9E-16 4.2E-21 150.0 17.2 181 72-277 219-409 (463)
5 PRK11883 protoporphyrinogen ox 99.7 6.7E-16 1.4E-20 145.4 18.3 181 72-276 214-400 (451)
6 COG1232 HemY Protoporphyrinoge 99.7 6.6E-16 1.4E-20 143.7 14.6 182 71-276 207-393 (444)
7 PLN02268 probable polyamine ox 99.5 5.5E-13 1.2E-17 125.4 18.6 174 73-271 195-370 (435)
8 PLN02328 lysine-specific histo 99.5 1.3E-12 2.9E-17 129.5 18.2 176 70-271 428-613 (808)
9 TIGR03467 HpnE squalene-associ 99.5 1.2E-12 2.7E-17 121.7 16.3 172 74-276 191-369 (419)
10 PLN02529 lysine-specific histo 99.5 3.8E-12 8.3E-17 125.6 19.4 177 70-271 348-533 (738)
11 PLN03000 amine oxidase 99.4 1.2E-11 2.7E-16 122.9 18.2 179 69-272 371-558 (881)
12 PF01593 Amino_oxidase: Flavin 99.3 1.2E-11 2.7E-16 114.2 13.0 182 73-276 206-394 (450)
13 PRK07233 hypothetical protein; 99.3 4.4E-11 9.4E-16 112.0 15.2 181 71-277 190-380 (434)
14 PLN02976 amine oxidase 99.3 2E-10 4.3E-15 118.1 18.9 181 70-272 927-1122(1713)
15 KOG1276 Protoporphyrinogen oxi 99.3 4.3E-11 9.4E-16 108.6 11.6 190 68-276 238-439 (491)
16 PLN02676 polyamine oxidase 99.2 7.3E-10 1.6E-14 105.8 17.5 175 75-272 220-410 (487)
17 COG1231 Monoamine oxidase [Ami 99.2 1.7E-10 3.7E-15 106.0 12.1 181 69-272 199-384 (450)
18 PLN02568 polyamine oxidase 99.2 1.7E-09 3.7E-14 104.3 17.9 184 70-277 233-463 (539)
19 PRK07208 hypothetical protein; 99.1 9.6E-10 2.1E-14 104.7 14.7 183 75-278 214-409 (479)
20 PLN02612 phytoene desaturase 98.9 5E-08 1.1E-12 94.9 15.8 159 79-259 308-472 (567)
21 TIGR02731 phytoene_desat phyto 98.8 1.1E-07 2.4E-12 89.9 16.2 176 78-275 212-403 (453)
22 TIGR02732 zeta_caro_desat caro 98.7 1.5E-07 3.3E-12 89.7 12.6 177 78-276 222-425 (474)
23 TIGR02733 desat_CrtD C-3',4' d 98.6 1.4E-06 3.1E-11 83.3 16.8 165 72-257 225-409 (492)
24 PLN02487 zeta-carotene desatur 98.3 7.9E-06 1.7E-10 79.4 13.5 179 72-273 287-498 (569)
25 KOG0029 Amine oxidase [Seconda 98.3 1.4E-05 2.9E-10 76.5 14.7 179 70-272 210-395 (501)
26 TIGR02734 crtI_fam phytoene de 98.1 5.6E-05 1.2E-09 72.5 14.0 95 72-177 212-312 (502)
27 TIGR02730 carot_isom carotene 98.0 0.00038 8.3E-09 66.7 16.7 172 72-257 222-409 (493)
28 COG2907 Predicted NAD/FAD-bind 98.0 4.7E-05 1E-09 68.3 9.0 96 70-178 211-306 (447)
29 KOG0685 Flavin-containing amin 97.7 0.00063 1.4E-08 63.5 11.6 174 73-272 217-420 (498)
30 PF13738 Pyr_redox_3: Pyridine 95.6 0.016 3.6E-07 48.2 4.3 50 78-130 84-133 (203)
31 PF07156 Prenylcys_lyase: Pren 95.3 0.051 1.1E-06 50.2 6.8 67 69-139 118-188 (368)
32 COG1233 Phytoene dehydrogenase 94.8 0.046 9.9E-07 52.5 5.3 58 71-130 216-276 (487)
33 PTZ00363 rab-GDP dissociation 94.3 0.12 2.7E-06 48.9 6.7 54 74-130 227-285 (443)
34 COG2081 Predicted flavoprotein 93.8 0.13 2.7E-06 47.6 5.5 66 69-137 101-169 (408)
35 TIGR01984 UbiH 2-polyprenyl-6- 92.8 5.8 0.00013 36.3 15.2 51 78-131 104-158 (382)
36 PF01266 DAO: FAD dependent ox 92.6 0.18 3.8E-06 45.3 4.6 49 78-130 146-198 (358)
37 PF03486 HI0933_like: HI0933-l 92.2 0.22 4.9E-06 46.7 4.9 65 71-138 101-169 (409)
38 PF13454 NAD_binding_9: FAD-NA 92.0 0.4 8.6E-06 38.5 5.5 34 94-130 119-152 (156)
39 TIGR03197 MnmC_Cterm tRNA U-34 90.7 0.41 8.9E-06 44.2 5.0 49 79-130 135-185 (381)
40 COG0579 Predicted dehydrogenas 90.0 0.73 1.6E-05 43.4 6.0 64 79-147 157-222 (429)
41 PRK13339 malate:quinone oxidor 89.9 1 2.2E-05 43.4 7.0 49 79-130 188-242 (497)
42 PLN02172 flavin-containing mon 89.1 0.54 1.2E-05 44.9 4.5 50 79-130 111-168 (461)
43 TIGR03219 salicylate_mono sali 89.0 0.9 2E-05 42.4 5.9 49 80-131 106-155 (414)
44 KOG4254 Phytoene desaturase [C 87.7 8.1 0.00017 36.7 10.9 68 73-144 258-328 (561)
45 PRK07494 2-octaprenyl-6-methox 86.9 25 0.00053 32.3 15.4 49 79-131 115-163 (388)
46 PF00743 FMO-like: Flavin-bind 85.9 0.77 1.7E-05 44.7 3.6 64 67-130 75-145 (531)
47 PRK09126 hypothetical protein; 85.9 1.9 4E-05 39.8 6.0 48 81-131 116-163 (392)
48 PRK08850 2-octaprenyl-6-methox 85.7 30 0.00065 32.0 14.8 49 80-131 116-164 (405)
49 PRK05732 2-octaprenyl-6-methox 85.3 2.2 4.7E-05 39.3 6.1 48 81-131 118-165 (395)
50 TIGR03862 flavo_PP4765 unchara 85.1 1.8 3.8E-05 40.2 5.4 63 72-138 79-144 (376)
51 PRK07236 hypothetical protein; 84.1 2.4 5.2E-05 39.1 5.9 52 77-131 98-150 (386)
52 PRK01747 mnmC bifunctional tRN 83.9 1.7 3.6E-05 43.5 5.0 49 79-130 408-458 (662)
53 PRK05714 2-octaprenyl-3-methyl 83.8 2.5 5.5E-05 39.2 5.9 48 80-131 117-164 (405)
54 PRK11728 hydroxyglutarate oxid 82.9 2.7 5.8E-05 39.0 5.7 48 79-130 149-199 (393)
55 PRK08020 ubiF 2-octaprenyl-3-m 82.6 3.2 6.8E-05 38.3 6.0 49 80-131 117-165 (391)
56 TIGR02352 thiamin_ThiO glycine 82.1 3 6.5E-05 37.3 5.5 48 79-130 137-188 (337)
57 PRK06847 hypothetical protein; 81.9 2.9 6.3E-05 38.2 5.5 40 89-131 120-159 (375)
58 TIGR03329 Phn_aa_oxid putative 81.8 2.7 5.9E-05 39.9 5.4 46 79-130 187-232 (460)
59 PTZ00383 malate:quinone oxidor 81.4 3 6.5E-05 40.2 5.5 37 91-130 232-268 (497)
60 PRK07588 hypothetical protein; 81.1 3.1 6.8E-05 38.4 5.4 39 90-131 116-154 (391)
61 PRK08849 2-octaprenyl-3-methyl 81.1 3.4 7.4E-05 38.1 5.7 48 81-131 116-163 (384)
62 PRK07333 2-octaprenyl-6-methox 80.8 4 8.6E-05 37.7 6.0 40 89-131 124-163 (403)
63 PRK11259 solA N-methyltryptoph 80.6 3.3 7.1E-05 37.8 5.3 38 89-130 162-199 (376)
64 PRK04965 NADH:flavorubredoxin 80.3 4.7 0.0001 37.1 6.3 42 87-131 194-235 (377)
65 PF00070 Pyr_redox: Pyridine n 79.7 3 6.5E-05 29.1 3.8 38 79-118 43-80 (80)
66 PRK06753 hypothetical protein; 79.3 5 0.00011 36.6 6.1 50 79-131 98-148 (373)
67 PRK08773 2-octaprenyl-3-methyl 78.9 4.9 0.00011 37.1 6.0 40 89-131 126-165 (392)
68 TIGR01292 TRX_reduct thioredox 78.9 4.3 9.2E-05 35.5 5.3 40 88-131 69-108 (300)
69 TIGR01988 Ubi-OHases Ubiquinon 78.7 4.9 0.00011 36.7 5.8 50 79-131 106-159 (385)
70 TIGR01377 soxA_mon sarcosine o 78.7 4 8.6E-05 37.3 5.2 39 88-130 157-195 (380)
71 COG2509 Uncharacterized FAD-de 78.7 3.9 8.4E-05 38.7 5.0 58 70-130 164-225 (486)
72 PRK08163 salicylate hydroxylas 78.3 5.3 0.00012 36.8 6.0 49 80-131 114-162 (396)
73 PRK09897 hypothetical protein; 78.2 4.2 9.1E-05 39.6 5.4 40 91-132 124-163 (534)
74 PF06039 Mqo: Malate:quinone o 77.7 4.6 0.0001 38.4 5.3 49 81-130 187-239 (488)
75 TIGR03364 HpnW_proposed FAD de 77.5 4.6 9.9E-05 36.8 5.3 44 79-130 149-192 (365)
76 PRK00711 D-amino acid dehydrog 76.0 6 0.00013 36.7 5.7 47 80-130 202-252 (416)
77 PRK08013 oxidoreductase; Provi 75.5 7 0.00015 36.3 6.0 48 81-131 117-164 (400)
78 PRK12409 D-amino acid dehydrog 75.0 6.4 0.00014 36.6 5.6 48 79-130 201-253 (410)
79 TIGR00275 flavoprotein, HI0933 74.2 6.3 0.00014 36.8 5.3 55 72-130 98-155 (400)
80 PRK06834 hypothetical protein; 73.6 7.3 0.00016 37.4 5.7 41 88-131 112-152 (488)
81 PRK07045 putative monooxygenas 72.8 8.8 0.00019 35.3 5.9 45 84-131 115-161 (388)
82 PRK05257 malate:quinone oxidor 72.6 7.8 0.00017 37.4 5.6 49 80-130 188-241 (494)
83 PF13450 NAD_binding_8: NAD(P) 72.0 2.8 6.1E-05 28.6 1.8 24 14-37 43-68 (68)
84 PRK05868 hypothetical protein; 71.3 11 0.00023 34.7 6.1 49 80-131 106-156 (372)
85 PRK06116 glutathione reductase 70.7 9.3 0.0002 36.1 5.6 41 88-131 220-261 (450)
86 PRK15317 alkyl hydroperoxide r 70.2 9.3 0.0002 36.9 5.6 41 88-131 278-318 (517)
87 TIGR01320 mal_quin_oxido malat 69.6 12 0.00025 36.0 6.1 51 79-130 178-235 (483)
88 PRK07845 flavoprotein disulfid 69.4 9.5 0.00021 36.3 5.4 47 87-136 229-275 (466)
89 PRK06416 dihydrolipoamide dehy 69.2 7.9 0.00017 36.7 4.8 46 87-135 224-272 (462)
90 PLN02507 glutathione reductase 68.7 10 0.00022 36.6 5.4 42 87-131 255-296 (499)
91 PRK07364 2-octaprenyl-6-methox 68.3 12 0.00026 34.6 5.8 40 90-131 136-177 (415)
92 TIGR03140 AhpF alkyl hydropero 68.3 11 0.00024 36.4 5.7 40 89-131 280-319 (515)
93 PRK07608 ubiquinone biosynthes 68.0 13 0.00028 34.0 5.9 47 80-131 116-163 (388)
94 PRK06617 2-octaprenyl-6-methox 67.5 13 0.00029 34.1 5.8 37 91-131 120-156 (374)
95 TIGR03378 glycerol3P_GlpB glyc 67.1 14 0.0003 34.9 5.8 49 79-130 267-317 (419)
96 PRK07190 hypothetical protein; 67.0 12 0.00026 36.0 5.6 41 88-131 121-161 (487)
97 PRK06475 salicylate hydroxylas 66.9 15 0.00032 34.1 6.1 49 81-131 113-163 (400)
98 PLN02927 antheraxanthin epoxid 66.5 13 0.00028 37.3 5.8 50 79-131 194-244 (668)
99 PRK05249 soluble pyridine nucl 65.3 13 0.00028 35.2 5.4 46 88-136 228-273 (461)
100 TIGR01424 gluta_reduc_2 glutat 65.1 14 0.0003 35.0 5.6 41 88-131 219-259 (446)
101 TIGR02032 GG-red-SF geranylger 64.7 13 0.00029 32.1 5.1 54 75-130 90-143 (295)
102 PRK06184 hypothetical protein; 64.6 15 0.00032 35.3 5.8 48 80-131 114-164 (502)
103 TIGR01350 lipoamide_DH dihydro 63.4 13 0.00029 35.1 5.1 46 88-135 223-269 (461)
104 PF13434 K_oxygenase: L-lysine 62.9 8 0.00017 35.3 3.4 52 79-131 98-155 (341)
105 PRK06183 mhpA 3-(3-hydroxyphen 62.4 16 0.00035 35.4 5.6 49 81-131 119-170 (538)
106 PRK08010 pyridine nucleotide-d 62.2 16 0.00035 34.3 5.4 44 88-135 211-254 (441)
107 PRK10157 putative oxidoreducta 62.0 16 0.00034 34.4 5.3 52 77-131 109-160 (428)
108 PRK09754 phenylpropionate diox 61.7 21 0.00046 33.0 6.1 40 88-131 198-237 (396)
109 TIGR01989 COQ6 Ubiquinone bios 60.4 1.5E+02 0.0033 27.8 15.5 51 80-131 122-179 (437)
110 PRK06996 hypothetical protein; 59.6 21 0.00045 33.1 5.6 48 81-131 121-170 (398)
111 PRK14727 putative mercuric red 58.7 20 0.00043 34.2 5.5 40 88-131 240-279 (479)
112 COG2072 TrkA Predicted flavopr 58.5 15 0.00032 34.9 4.4 41 91-131 99-140 (443)
113 COG0654 UbiH 2-polyprenyl-6-me 58.1 1.5E+02 0.0033 27.2 17.0 51 78-131 103-158 (387)
114 TIGR02374 nitri_red_nirB nitri 58.1 23 0.00049 36.3 6.0 59 79-140 185-243 (785)
115 TIGR03385 CoA_CoA_reduc CoA-di 57.8 20 0.00044 33.5 5.3 46 83-131 51-99 (427)
116 PRK14694 putative mercuric red 57.0 22 0.00049 33.7 5.5 46 88-137 230-275 (468)
117 TIGR02485 CobZ_N-term precorri 56.5 31 0.00068 32.3 6.3 56 76-133 120-181 (432)
118 TIGR02374 nitri_red_nirB nitri 53.6 20 0.00044 36.7 4.8 39 88-131 66-104 (785)
119 PF13434 K_oxygenase: L-lysine 52.6 20 0.00043 32.8 4.2 39 91-130 294-336 (341)
120 PRK13512 coenzyme A disulfide 51.8 30 0.00064 32.6 5.4 47 83-131 65-113 (438)
121 TIGR03169 Nterm_to_SelD pyridi 51.6 26 0.00056 31.9 4.8 46 78-130 193-238 (364)
122 TIGR01373 soxB sarcosine oxida 51.1 39 0.00084 31.2 5.9 40 88-130 195-235 (407)
123 TIGR03452 mycothione_red mycot 51.0 36 0.00079 32.2 5.8 44 90-136 223-266 (452)
124 PRK06185 hypothetical protein; 50.3 37 0.0008 31.3 5.7 49 81-131 114-165 (407)
125 PRK07251 pyridine nucleotide-d 50.3 31 0.00067 32.4 5.2 42 86-131 208-249 (438)
126 PRK08132 FAD-dependent oxidore 49.9 37 0.0008 33.0 5.8 49 81-131 131-181 (547)
127 PRK07846 mycothione reductase; 49.9 37 0.0008 32.2 5.7 44 90-136 220-263 (451)
128 PRK13748 putative mercuric red 49.4 34 0.00073 33.3 5.4 45 88-136 322-366 (561)
129 PRK06912 acoL dihydrolipoamide 49.1 33 0.00072 32.5 5.2 45 88-135 223-268 (458)
130 COG1249 Lpd Pyruvate/2-oxoglut 49.0 40 0.00087 32.2 5.7 46 82-130 221-267 (454)
131 TIGR03169 Nterm_to_SelD pyridi 48.8 33 0.00071 31.2 5.0 41 85-131 63-103 (364)
132 PRK09564 coenzyme A disulfide 48.6 42 0.00091 31.5 5.8 51 82-136 197-247 (444)
133 PRK08244 hypothetical protein; 48.5 33 0.00071 32.8 5.1 52 78-131 102-155 (493)
134 PTZ00052 thioredoxin reductase 48.2 38 0.00081 32.6 5.5 46 88-136 234-279 (499)
135 PRK06175 L-aspartate oxidase; 47.9 38 0.00082 32.0 5.4 52 79-133 132-187 (433)
136 PRK04965 NADH:flavorubredoxin 47.5 31 0.00068 31.6 4.7 42 84-131 66-107 (377)
137 PRK10015 oxidoreductase; Provi 47.5 37 0.0008 32.0 5.2 43 86-131 118-160 (429)
138 TIGR03385 CoA_CoA_reduc CoA-di 46.8 44 0.00095 31.2 5.6 43 84-131 187-229 (427)
139 PRK07818 dihydrolipoamide dehy 46.8 39 0.00084 32.1 5.3 47 88-136 225-274 (466)
140 TIGR01790 carotene-cycl lycope 46.8 43 0.00093 30.7 5.5 38 90-130 99-136 (388)
141 PRK07538 hypothetical protein; 46.6 45 0.00098 30.9 5.7 49 81-131 108-161 (413)
142 PRK14989 nitrite reductase sub 46.6 54 0.0012 34.0 6.6 60 79-139 190-249 (847)
143 TIGR02053 MerA mercuric reduct 46.5 38 0.00081 32.1 5.2 52 82-135 213-266 (463)
144 TIGR01421 gluta_reduc_1 glutat 46.4 43 0.00094 31.7 5.5 47 88-136 219-266 (450)
145 PTZ00318 NADH dehydrogenase-li 46.3 46 0.001 31.2 5.7 38 86-130 238-275 (424)
146 PRK12266 glpD glycerol-3-phosp 45.3 35 0.00076 32.9 4.8 41 88-130 167-211 (508)
147 TIGR00031 UDP-GALP_mutase UDP- 44.8 35 0.00077 31.7 4.5 70 75-171 194-263 (377)
148 PRK06126 hypothetical protein; 44.5 44 0.00096 32.4 5.4 41 89-131 140-184 (545)
149 PRK11445 putative oxidoreducta 43.7 59 0.0013 29.5 5.8 41 89-131 111-153 (351)
150 PRK06327 dihydrolipoamide dehy 43.7 43 0.00094 31.9 5.1 41 89-131 237-280 (475)
151 KOG1399 Flavin-containing mono 43.1 28 0.00062 33.1 3.7 50 79-130 90-148 (448)
152 PLN02463 lycopene beta cyclase 43.1 56 0.0012 31.1 5.7 39 89-131 127-165 (447)
153 PRK06370 mercuric reductase; V 43.1 49 0.0011 31.3 5.4 47 87-135 223-271 (463)
154 PRK09564 coenzyme A disulfide 42.8 45 0.00097 31.3 5.0 41 89-131 69-111 (444)
155 PRK09754 phenylpropionate diox 41.3 40 0.00086 31.2 4.4 38 89-131 71-108 (396)
156 TIGR01438 TGR thioredoxin and 40.7 54 0.0012 31.5 5.3 49 87-137 231-281 (484)
157 PF05834 Lycopene_cycl: Lycope 39.1 77 0.0017 29.1 5.9 37 91-130 101-137 (374)
158 COG0665 DadA Glycine/D-amino a 38.0 64 0.0014 29.3 5.2 47 80-130 157-207 (387)
159 TIGR01813 flavo_cyto_c flavocy 37.9 62 0.0013 30.3 5.2 51 80-132 131-189 (439)
160 TIGR01423 trypano_reduc trypan 37.5 84 0.0018 30.2 6.0 49 88-138 243-291 (486)
161 PRK13369 glycerol-3-phosphate 37.4 45 0.00097 32.1 4.2 41 88-130 167-210 (502)
162 COG1252 Ndh NADH dehydrogenase 36.5 52 0.0011 30.9 4.3 49 76-130 209-257 (405)
163 PRK06115 dihydrolipoamide dehy 36.2 66 0.0014 30.6 5.1 42 88-131 227-272 (466)
164 PF05678 VQ: VQ motif; InterP 35.2 31 0.00066 19.8 1.6 20 20-39 5-24 (31)
165 TIGR03377 glycerol3P_GlpA glyc 33.5 1.9E+02 0.0041 27.8 7.8 41 88-130 140-185 (516)
166 PRK06134 putative FAD-binding 33.2 84 0.0018 30.9 5.4 46 88-135 229-278 (581)
167 COG0644 FixC Dehydrogenases (f 33.1 93 0.002 28.8 5.5 59 71-131 89-148 (396)
168 PRK14989 nitrite reductase sub 33.0 68 0.0015 33.3 4.8 39 88-131 71-109 (847)
169 PTZ00058 glutathione reductase 32.9 98 0.0021 30.4 5.7 43 88-131 290-332 (561)
170 TIGR01789 lycopene_cycl lycope 32.3 92 0.002 28.7 5.2 83 32-130 51-133 (370)
171 PF00732 GMC_oxred_N: GMC oxid 32.2 1.1E+02 0.0023 26.7 5.5 51 90-143 207-263 (296)
172 PRK06481 fumarate reductase fl 31.3 97 0.0021 29.9 5.4 44 88-133 202-249 (506)
173 PRK05329 anaerobic glycerol-3- 31.2 1.1E+02 0.0023 29.0 5.5 52 76-130 257-313 (422)
174 PRK12845 3-ketosteroid-delta-1 30.8 93 0.002 30.6 5.2 55 79-135 217-278 (564)
175 PRK12842 putative succinate de 30.3 1E+02 0.0022 30.3 5.4 55 79-135 214-275 (574)
176 COG1759 5-formaminoimidazole-4 29.3 45 0.00097 30.3 2.4 27 19-45 163-190 (361)
177 PRK10262 thioredoxin reductase 29.2 1E+02 0.0022 27.5 4.8 38 89-131 76-113 (321)
178 PRK07512 L-aspartate oxidase; 28.1 72 0.0016 30.8 3.9 53 79-133 140-195 (513)
179 PF09756 DDRGK: DDRGK domain; 27.8 42 0.00091 28.0 1.9 51 20-87 120-170 (188)
180 PRK13512 coenzyme A disulfide 27.2 1.1E+02 0.0025 28.7 5.0 37 88-131 201-237 (438)
181 TIGR00551 nadB L-aspartate oxi 27.2 1.2E+02 0.0026 29.0 5.3 50 80-131 133-185 (488)
182 PF15320 RAM: mRNA cap methyla 27.1 33 0.00071 24.5 1.0 27 23-49 11-38 (81)
183 PRK06467 dihydrolipoamide dehy 26.7 1.3E+02 0.0028 28.6 5.4 44 91-136 229-275 (471)
184 PRK13977 myosin-cross-reactive 24.7 1.9E+02 0.0042 28.5 6.1 53 79-131 226-289 (576)
185 PF00890 FAD_binding_2: FAD bi 24.6 1.1E+02 0.0023 28.4 4.3 58 77-136 139-204 (417)
186 PLN02546 glutathione reductase 24.3 1.5E+02 0.0031 29.2 5.2 47 88-136 305-351 (558)
187 PRK11101 glpA sn-glycerol-3-ph 24.1 3.7E+02 0.0081 26.2 8.1 41 88-130 161-206 (546)
188 PRK08274 tricarballylate dehyd 24.0 1.5E+02 0.0032 28.0 5.2 55 77-133 129-190 (466)
189 PRK05976 dihydrolipoamide dehy 24.0 1.7E+02 0.0038 27.7 5.7 47 88-135 233-281 (472)
190 KOG1346 Programmed cell death 23.9 42 0.00092 31.8 1.4 53 75-130 384-444 (659)
191 PF01494 FAD_binding_3: FAD bi 22.5 89 0.0019 27.5 3.2 41 89-131 124-168 (356)
192 PRK06263 sdhA succinate dehydr 21.1 2E+02 0.0044 27.9 5.6 50 81-133 140-195 (543)
193 PLN02697 lycopene epsilon cycl 21.0 2.4E+02 0.0051 27.6 5.9 38 89-130 205-243 (529)
194 PRK12837 3-ketosteroid-delta-1 20.7 1.9E+02 0.0042 27.9 5.3 51 82-135 180-235 (513)
195 KOG2404 Fumarate reductase, fl 20.3 1.1E+02 0.0024 28.1 3.2 65 68-133 132-204 (477)
196 PRK07121 hypothetical protein; 20.2 2.1E+02 0.0046 27.3 5.4 54 79-133 177-237 (492)
197 PRK09231 fumarate reductase fl 20.2 2.3E+02 0.005 27.9 5.8 51 81-133 139-194 (582)
198 KOG1336 Monodehydroascorbate/f 20.1 1.7E+02 0.0036 28.1 4.4 65 73-138 252-316 (478)
199 PRK12843 putative FAD-binding 20.0 1.8E+02 0.004 28.5 5.0 42 89-133 234-280 (578)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.5e-53 Score=358.34 Aligned_cols=250 Identities=26% Similarity=0.460 Sum_probs=215.9
Q ss_pred CCccccccCCCCceecccCCCceecCChhHHHHHHHHHhCCceeeccCcceeeeccCceeeecccCCCCccEEeCCCchH
Q 023469 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS 80 (282)
Q Consensus 1 mstrr~~~~~~~~~~~DhGAqyft~~~~~f~~~v~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~~Gm~~ 80 (282)
|+|||. +.| .||||||||+++++.|.++|+.|.++|+|.+|...++++.+.+ .. .......|+|.+||++
T Consensus 40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~--~~---~~~d~~pyvg~pgmsa 109 (331)
T COG3380 40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG--SP---PRGDEDPYVGEPGMSA 109 (331)
T ss_pred hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC--CC---CCCCCCccccCcchHH
Confidence 799999 666 6999999999999999999999999999999999888886433 11 1222334999999999
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCCCCcchHHHHH
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK 160 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~~~~~~~~~~~ 160 (282)
|+|+|+..+. |+++++|+.|.+ .++.|+|++++|.....||.|||| +|+||++.||. +. +..+..++.+.
T Consensus 110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt-~~--~~~~p~~l~~~ 179 (331)
T COG3380 110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLT-TD--ADDLPAALRAA 179 (331)
T ss_pred HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcC-cc--cccchHHHHHh
Confidence 9999998664 999999999998 788999999888776799999999 99999999995 11 12333468899
Q ss_pred hccCCCcceeEEEEeccCCCCCCCccceEecCCCceEEEeeCCCCCCCCCCCCeEEEEeCHHHHHHhHhhcCCCCCChhh
Q 023469 161 LEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEAT 240 (282)
Q Consensus 161 l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~~~l~wi~~~sskpgr~~~~~~~v~~~~~~~s~~~~~~~~~~~~~~~~ 240 (282)
+..+.|.|||+++++|++++. .|+.|.++ +.++|.|+++|.+||||.|.++.||+|++++||+.|++. +
T Consensus 180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~---------~ 248 (331)
T COG3380 180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH---------P 248 (331)
T ss_pred hccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC---------C
Confidence 999999999999999999975 68999655 556999999999999999988999999999999999998 8
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCcceeeeeccCcccccccccC
Q 023469 241 LKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWYRRSNITCRLG 281 (282)
Q Consensus 241 ~e~v~~~ll~~l~~l~~-~~~~P~~~~~~rW~~A~P~~~~~~ 281 (282)
+|.++..|..+++.+.+ .+++|.++.+||||||+|.+-.-+
T Consensus 249 ~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~ 290 (331)
T COG3380 249 AEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAG 290 (331)
T ss_pred HHHHHHHHHHhhhhccCCCCCcchHHHhhccccccccccccC
Confidence 89999888888888854 788999999999999999876543
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.83 E-value=1.5e-19 Score=171.01 Aligned_cols=184 Identities=12% Similarity=0.136 Sum_probs=145.2
Q ss_pred EEeCCCchHHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCC
Q 023469 72 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (282)
+...+||++|++.|++.++ .+|+++++|.+|++ .+++|.|.+++|+.+ .||+||+| +|++++..++.
T Consensus 218 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~t---~P~~~~~~ll~------ 285 (462)
T TIGR00562 218 QTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH--RGSNYTLELDNGVTV-ETDSVVVT---APHKAAAGLLS------ 285 (462)
T ss_pred EecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe--cCCcEEEEECCCcEE-EcCEEEEC---CCHHHHHHHhc------
Confidence 4457899999999999886 68999999999997 777899988888543 79999999 99999999884
Q ss_pred CCcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCC---CceEEEeeCCCCCCCCCCC-CeEEEEeCHHHH
Q 023469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS---EVLSWAHCDSSKPGRSANS-ERWVLHSTADYA 224 (282)
Q Consensus 151 ~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~---~~l~wi~~~sskpgr~~~~-~~~v~~~~~~~s 224 (282)
...++..+.+.+++|.||+++++.|+++.+.. +..|++++.. ..+.|++.++.+|++.+.+ ..++++.+..++
T Consensus 286 -~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 286 -ELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATD 364 (462)
T ss_pred -ccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCC
Confidence 33456778899999999999999998764322 2344555543 3578887666668887633 346666666655
Q ss_pred HHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccCcccccc
Q 023469 225 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNIT 277 (282)
Q Consensus 225 ~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~~A~P~~ 277 (282)
..+.+. +++++++.++++|+++++....|.+..+|||++|+|.-
T Consensus 365 ~~~~~~---------~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~ 408 (462)
T TIGR00562 365 ESIVDL---------SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQY 408 (462)
T ss_pred ccccCC---------CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCC
Confidence 555555 88999999999999988765569999999999999974
No 3
>PLN02576 protoporphyrinogen oxidase
Probab=99.76 E-value=1.9e-17 Score=158.18 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=140.5
Q ss_pred cEEeCCCchHHHHHHhcCCC-CeeEcceeEEEEEeecCCCC-eEEEcc--CCCccccccEEEecCCCCCcchhhhhcCCC
Q 023469 71 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL-WSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (282)
Q Consensus 71 ~yvg~~Gm~~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~-w~l~~~--~G~~~~~~d~VVla~~~~pa~~~~~ll~~p 146 (282)
.|...+||++|+++|++.++ .+|++|++|.+|++ .+++ |.|+.. +|+....||+||+| +|++++..++.
T Consensus 231 ~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~--~~~~~~~v~~~~~~g~~~~~ad~VI~a---~P~~~l~~ll~-- 303 (496)
T PLN02576 231 VGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSK--NDDGGYSLTYDTPEGKVNVTAKAVVMT---APLYVVSEMLR-- 303 (496)
T ss_pred eEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEE--CCCCcEEEEEecCCCceeEEeCEEEEC---CCHHHHHHHhc--
Confidence 47778999999999999886 68999999999997 5555 988654 44322489999999 99999999985
Q ss_pred CCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC------Cccce--EecCC---CceEEEeeCCCCCCCCCCCC-e
Q 023469 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI------PVKGF--SFQDS---EVLSWAHCDSSKPGRSANSE-R 214 (282)
Q Consensus 147 ~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~------~~~g~--~~~~~---~~l~wi~~~sskpgr~~~~~-~ 214 (282)
...++..+.+.+++|.+|++|++.|+++.+.. +..|+ ++++. ..++|+..++.+|++.+... .
T Consensus 304 -----~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~ 378 (496)
T PLN02576 304 -----PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVL 378 (496)
T ss_pred -----ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEE
Confidence 23456788899999999999999999865322 33443 34332 25778877777788876432 3
Q ss_pred EEEEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeccCcccccc
Q 023469 215 WVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWYRRSNIT 277 (282)
Q Consensus 215 ~v~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~--~~P~~~~~~rW~~A~P~~ 277 (282)
++++.....+..+.+. +++++++.++++|+++++.. +.|....+|+|++|+|.-
T Consensus 379 l~~~~~~~~~~~~~~~---------s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~ 434 (496)
T PLN02576 379 LLNYIGGSRNTGIASA---------SEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQY 434 (496)
T ss_pred EEEEECCCCCcccccC---------CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCC
Confidence 4455555544445554 88999999999999987643 378889999999999864
No 4
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.72 E-value=1.9e-16 Score=150.04 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=135.5
Q ss_pred EEeCCCchHHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCC
Q 023469 72 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (282)
+...+||++|+++|++.+. .+|+++++|++|++ .+++|.|.+.+|+.+ .||+||+| +|++.+..|+..
T Consensus 219 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~a---~p~~~~~~ll~~----- 287 (463)
T PRK12416 219 VSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK--QGDRYEISFANHESI-QADYVVLA---APHDIAETLLQS----- 287 (463)
T ss_pred EeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEC---CCHHHHHhhcCC-----
Confidence 3558999999999999875 47999999999997 677899988777653 79999999 999998888741
Q ss_pred CCcchHHHHHhccCCCcceeEEEEeccCCCCCCC--ccceEecCCCce--EEEeeCCCC-CCCCCCCCeEEEEeCH----
Q 023469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEVL--SWAHCDSSK-PGRSANSERWVLHSTA---- 221 (282)
Q Consensus 151 ~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~--~~g~~~~~~~~l--~wi~~~ssk-pgr~~~~~~~v~~~~~---- 221 (282)
+++...+.++.|.+|.++++.|+++.+..+ ..|+++++++.+ .-+.+.|++ |++.+. ..+++....
T Consensus 288 ----~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~-~~~l~~~~~~~~~ 362 (463)
T PRK12416 288 ----NELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGK-QKLLVRMFYKSTN 362 (463)
T ss_pred ----cchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCC-CeEEEEEEeCCCC
Confidence 345566788999999999999997643223 456677655432 112345555 555543 345555432
Q ss_pred HHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccCcccccc
Q 023469 222 DYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNIT 277 (282)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~~A~P~~ 277 (282)
.......+. +++++.+.++++|+++++....|.++.++||++++|..
T Consensus 363 ~~~~~~~~~---------~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y 409 (463)
T PRK12416 363 PVYETIKNY---------SEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKY 409 (463)
T ss_pred CCchhhhcC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCc
Confidence 233333343 78999999999999998877789999999999999986
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.70 E-value=6.7e-16 Score=145.42 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=139.3
Q ss_pred EEeCCCchHHHHHHhcCCCC-eeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCC
Q 023469 72 YVGVPGMNSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~l~~-~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (282)
+...+||++|+++|++.++. +|+++++|.+|+. .+++|.|.+.+|+.. .||+||+| +|++++..++. +
T Consensus 214 ~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~vI~a---~p~~~~~~l~~-~---- 282 (451)
T PRK11883 214 GTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK--SGDGYEIVLSNGGEI-EADAVIVA---VPHPVLPSLFV-A---- 282 (451)
T ss_pred EeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE--cCCeEEEEECCCCEE-EcCEEEEC---CCHHHHHHhcc-C----
Confidence 45689999999999998865 7999999999997 667899988888653 79999999 99999999864 1
Q ss_pred CCcchHHHHHhccCCCcceeEEEEeccCCCC-CCCccceEecC--CCceEEEeeCCCC-CCCCCCCCeEEEEeCHHHHHH
Q 023469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLS-SIPVKGFSFQD--SEVLSWAHCDSSK-PGRSANSERWVLHSTADYART 226 (282)
Q Consensus 151 ~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~-~~~~~g~~~~~--~~~l~wi~~~ssk-pgr~~~~~~~v~~~~~~~s~~ 226 (282)
+...+.++.++|.++.++++.|+++.. ..+..|+++.. ...+.++.+++.+ |+..|.+..++.+..+.++..
T Consensus 283 ----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~ 358 (451)
T PRK11883 283 ----PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDE 358 (451)
T ss_pred ----hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCc
Confidence 345577889999999999999998742 22345666652 2245667667766 565554455666666555443
Q ss_pred h-HhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccCccccc
Q 023469 227 V-IAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNI 276 (282)
Q Consensus 227 ~-~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~~A~P~ 276 (282)
. .+. +++++++.++++|+++++....|.+..++||++|+|.
T Consensus 359 ~~~~~---------~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~ 400 (451)
T PRK11883 359 AVVDA---------TDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQ 400 (451)
T ss_pred hhccC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCC
Confidence 3 233 7899999999999998765567889999999999985
No 6
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.68 E-value=6.6e-16 Score=143.65 Aligned_cols=182 Identities=13% Similarity=0.187 Sum_probs=142.0
Q ss_pred cEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCC
Q 023469 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (282)
Q Consensus 71 ~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (282)
.+...+||++|+++|++.+..+|+++++|+.|.+ +..+|.+.+.+|+. ..||.||+| +|++.+..+|+
T Consensus 207 ~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~--~~~~~~~~~~~g~~-~~~D~VI~t---~p~~~l~~ll~------ 274 (444)
T COG1232 207 FGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK--KGAGKTIVDVGGEK-ITADGVIST---APLPELARLLG------ 274 (444)
T ss_pred ccccCccHHHHHHHHHHHhhhceeecceeeEEEE--cCCccEEEEcCCce-EEcceEEEc---CCHHHHHHHcC------
Confidence 4556899999999999999888999999999998 56667777777765 379999999 99999999986
Q ss_pred CCcchHHHHHhccCCCcceeEEEEeccCCCC--CCCccceEecCCCc-eEEEeeCCCC-CCCCCCCCeEE-EEeCHHHHH
Q 023469 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLS--SIPVKGFSFQDSEV-LSWAHCDSSK-PGRSANSERWV-LHSTADYAR 225 (282)
Q Consensus 151 ~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~--~~~~~g~~~~~~~~-l~wi~~~ssk-pgr~~~~~~~v-~~~~~~~s~ 225 (282)
. ......+..+.|.+..+|.++|+.+.. .....|+++++.++ +.-+.++|.| |.+.|.+..++ +.....+..
T Consensus 275 -~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~ 351 (444)
T COG1232 275 -D--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDE 351 (444)
T ss_pred -C--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCc
Confidence 2 345567788999999999999998621 12455788888666 6677778888 88777443233 222222222
Q ss_pred HhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccCccccc
Q 023469 226 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNI 276 (282)
Q Consensus 226 ~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~~A~P~ 276 (282)
....+ ++||+.+.++++|.++++....|.++.+.||++++|+
T Consensus 352 ~~~~~---------~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~Pq 393 (444)
T COG1232 352 SVSTM---------SDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQ 393 (444)
T ss_pred chhcc---------CHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCc
Confidence 22222 7899999999999999988889999999999999996
No 7
>PLN02268 probable polyamine oxidase
Probab=99.53 E-value=5.5e-13 Score=125.41 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=129.9
Q ss_pred EeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhh-cCCCCCCCC
Q 023469 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPPLDL 151 (282)
Q Consensus 73 vg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~~p~~~~~ 151 (282)
...+||++|+++|++.+ +|+++++|.+|.+ .+++|.|++.+|+.+ .||+||+| +|++.+..+ +...+
T Consensus 195 ~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VIva---~P~~~l~~~~i~f~p---- 262 (435)
T PLN02268 195 LMVRGYDPVINTLAKGL--DIRLNHRVTKIVR--RYNGVKVTVEDGTTF-VADAAIIA---VPLGVLKANIIKFEP---- 262 (435)
T ss_pred eecCCHHHHHHHHhccC--ceeCCCeeEEEEE--cCCcEEEEECCCcEE-EcCEEEEe---cCHHHHhcCcceecC----
Confidence 34569999999999854 5999999999997 677899998888654 79999999 999987653 22211
Q ss_pred CcchHHHHHhccCCCcceeEEEEeccCCCCC-CCccceEecCCCceEEEeeCCCCCCCCCCCCeEEEEeCHHHHHHhHhh
Q 023469 152 TFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQ 230 (282)
Q Consensus 152 ~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~-~~~~g~~~~~~~~l~wi~~~sskpgr~~~~~~~v~~~~~~~s~~~~~~ 230 (282)
.+.+...+.++.+.|.++.++++.|++++|. ..+.|.+.+....+.|..+.+..+| ...++.+.++.++....+.
T Consensus 263 ~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g----~~~l~~~~~g~~a~~~~~~ 338 (435)
T PLN02268 263 ELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATG----HPVLVYMPAGRLARDIEKL 338 (435)
T ss_pred CCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCC----CCEEEEEeccHHHHHHHhC
Confidence 2334556778899999999999999998764 2345544433334445543322222 2367778887777766665
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccC
Q 023469 231 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWY 271 (282)
Q Consensus 231 ~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~ 271 (282)
+++++++.++++|.++++....|..+.+|+|.
T Consensus 339 ---------~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~ 370 (435)
T PLN02268 339 ---------SDEAAANFAMSQLKKMLPDATEPVQYLVSRWG 370 (435)
T ss_pred ---------CHHHHHHHHHHHHHHHcCCCCCccEEEecccC
Confidence 88999999999999988766789999999998
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.49 E-value=1.3e-12 Score=129.46 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=128.7
Q ss_pred ccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhh-cCCCCC
Q 023469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPP 148 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~~p~~ 148 (282)
.++...+||++|+++|++.++ |+++++|++|.+ .+++|.+. .+|+.+ .||+||+| +|.+.+... +...|
T Consensus 428 ~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~--~~dgV~V~-~~G~~~-~AD~VIvT---vPl~vLk~~~I~F~P- 497 (808)
T PLN02328 428 DHCFIPGGNDTFVRELAKDLP--IFYERTVESIRY--GVDGVIVY-AGGQEF-HGDMVLCT---VPLGVLKKGSIEFYP- 497 (808)
T ss_pred eEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEE--cCCeEEEE-eCCeEE-EcCEEEEC---CCHHHHhhcccccCC-
Confidence 466778999999999999775 999999999998 67789884 456554 79999999 999987641 11111
Q ss_pred CCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCCC---ceEEEeeCCCCCCCCCCCCeEEEEeCHHH
Q 023469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDSE---VLSWAHCDSSKPGRSANSERWVLHSTADY 223 (282)
Q Consensus 149 ~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~~---~l~wi~~~sskpgr~~~~~~~v~~~~~~~ 223 (282)
++.+...++++++.|.++.++++.|++++|.. ...|++..+.. ...+. .+.+.+. ...+++.+.++++
T Consensus 498 ---~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf-~s~s~~~---G~~vLvafv~G~~ 570 (808)
T PLN02328 498 ---ELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLF-YSYSSVS---GGPLLIALVAGDA 570 (808)
T ss_pred ---CCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEE-ecCCCCC---CCcEEEEEecChh
Confidence 23446678899999999999999999998753 23454443221 22222 2322221 1247888888888
Q ss_pred HHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC----CCCcceeeeeccC
Q 023469 224 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWY 271 (282)
Q Consensus 224 s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~----~~~P~~~~~~rW~ 271 (282)
+....+. +++++++.+++.|+++++. .+.|..+.+|||.
T Consensus 571 A~~~e~l---------sdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~ 613 (808)
T PLN02328 571 AVKFETL---------SPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWG 613 (808)
T ss_pred hHHHhcC---------CHHHHHHHHHHHHHHHhCcccccccCcceEEEecCC
Confidence 8777665 7889999999999988652 3579999999999
No 9
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.48 E-value=1.2e-12 Score=121.75 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=117.7
Q ss_pred eCCCchHHHHH-HhcC---CCCeeEcceeEEEEEeecCCCCeEEEc-cCCCccccccEEEecCCCCCcchhhhhcCCCCC
Q 023469 74 GVPGMNSICKA-LCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (282)
Q Consensus 74 g~~Gm~~l~~~-La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~-~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~ 148 (282)
..+||+++... |++. .+.+|+++++|.+|+. .+++|.+.. .+|+.+ .||+||+| +|++++..+|.
T Consensus 191 ~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~~~~~~g~~~-~~d~vi~a---~p~~~~~~ll~---- 260 (419)
T TIGR03467 191 PRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA--NAGGIRALVLSGGETL-PADAVVLA---VPPRHAASLLP---- 260 (419)
T ss_pred eCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE--cCCcceEEEecCCccc-cCCEEEEc---CCHHHHHHhCC----
Confidence 35799876543 6653 3678999999999997 666655433 355543 79999999 99999999874
Q ss_pred CCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccceEecCCCceEEEeeCCCCCCCCCCCCeEEEEeCHHHHHHhH
Q 023469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVI 228 (282)
Q Consensus 149 ~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~~~l~wi~~~sskpgr~~~~~~~v~~~~~~~s~~~~ 228 (282)
. ++..+.+++++|.+|+++++.|+++.+. +...+.+.+ ....|+++.+.+++... ..++++.. +..+.
T Consensus 261 ---~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~ 328 (419)
T TIGR03467 261 ---G--EDLGALLTALGYSPITTVHLRLDRAVRL-PAPMVGLVG-GLAQWLFDRGQLAGEPG-YLAVVISA----ARDLV 328 (419)
T ss_pred ---C--chHHHHHhhcCCcceEEEEEEeCCCcCC-CCCeeeecC-CceeEEEECCcCCCCCC-EEEEEEec----chhhc
Confidence 1 2455678899999999999999998742 222222323 46788987776654321 11222322 33444
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeccCccccc
Q 023469 229 AQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWYRRSNI 276 (282)
Q Consensus 229 ~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~--~~P~~~~~~rW~~A~P~ 276 (282)
+. +++++++.+++++.++++.. ..|.+..+.+|.+++|.
T Consensus 329 ~~---------~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (419)
T TIGR03467 329 DL---------PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFA 369 (419)
T ss_pred cC---------CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccc
Confidence 44 78999999999999987644 45777777777665543
No 10
>PLN02529 lysine-specific histone demethylase 1
Probab=99.47 E-value=3.8e-12 Score=125.57 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=127.9
Q ss_pred ccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhh-cCCCCC
Q 023469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPP 148 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~~p~~ 148 (282)
..+...+||++|+++|++.++ |+++++|.+|++ .+++|.|.+. ++.+ .||+||+| +|.+.+... +...|
T Consensus 348 ~~~~i~GG~~~Li~aLA~~L~--IrLnt~V~~I~~--~~dGVtV~t~-~~~~-~AD~VIVT---VPlgVLk~~~I~F~P- 417 (738)
T PLN02529 348 DHCFLAGGNWRLINALCEGVP--IFYGKTVDTIKY--GNDGVEVIAG-SQVF-QADMVLCT---VPLGVLKKRTIRFEP- 417 (738)
T ss_pred ceEEECCcHHHHHHHHHhcCC--EEcCCceeEEEE--cCCeEEEEEC-CEEE-EcCEEEEC---CCHHHHHhccccCCC-
Confidence 456678899999999998664 999999999998 7778998753 3333 79999999 999988743 22222
Q ss_pred CCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCC-Cc-eEEEeeCCCCCCCCCCCCeEEEEeCHHHH
Q 023469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EV-LSWAHCDSSKPGRSANSERWVLHSTADYA 224 (282)
Q Consensus 149 ~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~-~~-l~wi~~~sskpgr~~~~~~~v~~~~~~~s 224 (282)
++.+...++++++.|.++.++++.|++++|.. +..|++.... .. ..+++.+..++. ...+++.+..++.+
T Consensus 418 ---pLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~---ggpvLvafv~G~~A 491 (738)
T PLN02529 418 ---ELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVS---GGPALVALVAGEAA 491 (738)
T ss_pred ---CCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCC---CCCEEEEEECchhh
Confidence 23345677899999999999999999998742 3445443221 11 112222333321 22467888888887
Q ss_pred HHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC----CCCcceeeeeccC
Q 023469 225 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWY 271 (282)
Q Consensus 225 ~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~----~~~P~~~~~~rW~ 271 (282)
...... +++++++.+++.|+++++. .+.|..+.+++|.
T Consensus 492 ~~le~l---------sdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~ 533 (738)
T PLN02529 492 QRFENT---------DPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWG 533 (738)
T ss_pred HHHhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCC
Confidence 766555 7889999999999998652 3478899999999
No 11
>PLN03000 amine oxidase
Probab=99.41 E-value=1.2e-11 Score=122.91 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=129.1
Q ss_pred CccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh-hcCCCC
Q 023469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPP 147 (282)
Q Consensus 69 ~~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~~p~ 147 (282)
..+|..++||++|+++|++.++ |+++++|++|++ .++++.|++.++ .+ .||+||+| +|...+.. -....|
T Consensus 371 G~~~~v~GG~~~LieaLa~~L~--I~Ln~~Vt~I~~--~~dgV~V~~~~~-~~-~AD~VIvT---VPlgVLk~~~I~F~P 441 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENVP--ILYEKTVQTIRY--GSNGVKVIAGNQ-VY-EGDMVLCT---VPLGVLKNGSIKFVP 441 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhCC--cccCCcEEEEEE--CCCeEEEEECCc-EE-EeceEEEc---CCHHHHhhCceeeCC
Confidence 3467778999999999999875 999999999998 778899986544 33 79999999 99988773 111111
Q ss_pred CCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCCC--ceEEEeeCCCCCCCCCCCCeEEEEeCHHH
Q 023469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDSE--VLSWAHCDSSKPGRSANSERWVLHSTADY 223 (282)
Q Consensus 148 ~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~~--~l~wi~~~sskpgr~~~~~~~v~~~~~~~ 223 (282)
++.+...++++.+.|..+.++.+.|++++|.. ...|+++.+.. ...+++.+.++... ...++....++.
T Consensus 442 ----pLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G---~pVLvafv~Gd~ 514 (881)
T PLN03000 442 ----ELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAG---GPLLIALVAGEA 514 (881)
T ss_pred ----CCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCC---CcEEEEEecCch
Confidence 34445667899999999999999999998753 34555543321 12334444444221 235666777666
Q ss_pred HHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC----CCCcceeeeeccCc
Q 023469 224 ARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS----IPLPIFRKAHRWYR 272 (282)
Q Consensus 224 s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~----~~~P~~~~~~rW~~ 272 (282)
+...... +++++.+.+++.|+++++. .+.|..+.+++|..
T Consensus 515 A~~le~l---------SdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~ 558 (881)
T PLN03000 515 AHKFETM---------PPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGG 558 (881)
T ss_pred hHHhhcC---------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCC
Confidence 6554444 7899999999999998752 35799999999984
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.34 E-value=1.2e-11 Score=114.24 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=129.4
Q ss_pred EeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh-hcCCCCCCCC
Q 023469 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPPLDL 151 (282)
Q Consensus 73 vg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~~p~~~~~ 151 (282)
.+.+++..+.+.+++..+.+|+++++|++|+. .++++.+...+|+.+ .||+||+| +|.+.+.. .+. |
T Consensus 206 ~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~--~~~~v~v~~~~g~~~-~ad~VI~a---~p~~~l~~i~~~-p----- 273 (450)
T PF01593_consen 206 VGMGGLSLALALAAEELGGEIRLNTPVTRIER--EDGGVTVTTEDGETI-EADAVISA---VPPSVLKNILLL-P----- 273 (450)
T ss_dssp EETTTTHHHHHHHHHHHGGGEESSEEEEEEEE--ESSEEEEEETTSSEE-EESEEEE----S-HHHHHTSEEE-S-----
T ss_pred ecccchhHHHHHHHhhcCceeecCCcceeccc--cccccccccccceEE-ecceeeec---Cchhhhhhhhhc-c-----
Confidence 34555566666666556678999999999998 678899999998754 89999999 99999886 332 1
Q ss_pred CcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCC-CceEEEeeCCCCCCCCCCCCeEEEEeCHHHHHHhH
Q 023469 152 TFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVI 228 (282)
Q Consensus 152 ~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~-~~l~wi~~~sskpgr~~~~~~~v~~~~~~~s~~~~ 228 (282)
.+.....++++.+.|.++.++.+.|+++.+.. ...|+++.+. ..+.++...+.++++ +....++............
T Consensus 274 ~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 352 (450)
T PF01593_consen 274 PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWD 352 (450)
T ss_dssp TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHT
T ss_pred cccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchhc
Confidence 22233567779999999999999999987643 3566666554 367777666666666 3334455555555554444
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHhcCC--CCCCcceeeeeccCc-cccc
Q 023469 229 AQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWYR-RSNI 276 (282)
Q Consensus 229 ~~~~~~~~~~~~~e~v~~~ll~~l~~l~~--~~~~P~~~~~~rW~~-A~P~ 276 (282)
+. +++++.+.++++|+++++ ..+.|....+++|.. ..+.
T Consensus 353 ~~---------~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~ 394 (450)
T PF01593_consen 353 DL---------SDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPR 394 (450)
T ss_dssp TS---------CHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTS
T ss_pred cc---------chhhhHHHHHHHhhhccccccccccccccccccccccccc
Confidence 44 889999999999999876 345677778899987 4444
No 13
>PRK07233 hypothetical protein; Provisional
Probab=99.31 E-value=4.4e-11 Score=112.01 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=120.8
Q ss_pred cEEeCCCchHHHHHHhcCC---CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCC
Q 023469 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (282)
Q Consensus 71 ~yvg~~Gm~~l~~~La~~l---~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (282)
.+..++||++|+++|++.+ +.+|+++++|.+|+. .+++|.+...+|+.+ .+|+||+| +|++.+..++.
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~~~~~~~~~~~~~~~-~ad~vI~a---~p~~~~~~ll~--- 260 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI--DGGGVTGVEVDGEEE-DFDAVIST---APPPILARLVP--- 260 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE--cCCceEEEEeCCceE-ECCEEEEC---CCHHHHHhhcC---
Confidence 3445889999999998765 578999999999997 666776544555543 79999999 99999888873
Q ss_pred CCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccceEecCC-CceEEEeeCCCC-CCCCCCC-CeEEEE--eCHH
Q 023469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PGRSANS-ERWVLH--STAD 222 (282)
Q Consensus 148 ~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~-~~l~wi~~~ssk-pgr~~~~-~~~v~~--~~~~ 222 (282)
...+...+.++.++|.+++++++.|+++... + .-..+.+. .++.++...+.. |+..+.+ .++++. ..++
T Consensus 261 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 334 (434)
T PRK07233 261 ----DLPADVLARLRRIDYQGVVCMVLKLRRPLTD-Y-YWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD 334 (434)
T ss_pred ----CCcHHHHhhhcccCccceEEEEEEecCCCCC-C-ceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC
Confidence 2234555677889999999999999987531 1 11112221 233333333333 4433222 222222 2221
Q ss_pred HHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeccCcccccc
Q 023469 223 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWYRRSNIT 277 (282)
Q Consensus 223 ~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~--~~P~~~~~~rW~~A~P~~ 277 (282)
...... +++++++.++++|.++++.. ..+....++||++|.|.-
T Consensus 335 --~~~~~~---------~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~ 380 (434)
T PRK07233 335 --HPLWQM---------SDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIY 380 (434)
T ss_pred --ChhhcC---------CHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccc
Confidence 122233 67899999999999987633 357888999999999863
No 14
>PLN02976 amine oxidase
Probab=99.29 E-value=2e-10 Score=118.11 Aligned_cols=181 Identities=10% Similarity=0.068 Sum_probs=127.6
Q ss_pred ccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeec--------CCCCeEEEccCCCccccccEEEecCCCCCcchhhh
Q 023469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLE--------DKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD 141 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~--------~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ 141 (282)
..|...+||++|+++|++.+. |+++++|++|.+.. .++++.|.+.+|+.+ .||+||+| +|...+..
T Consensus 927 ~~~rIkGGYqqLIeALAe~L~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVT---VPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLIT---VPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhCC--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEe---CCHHHhhh
Confidence 567778999999999999774 99999999999711 135799998888665 79999999 99887652
Q ss_pred h-cCCCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC--CccceEecCC--CceEEEeeCCCCCCCCCCCCeEE
Q 023469 142 V-TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS--EVLSWAHCDSSKPGRSANSERWV 216 (282)
Q Consensus 142 l-l~~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~--~~~g~~~~~~--~~l~wi~~~sskpgr~~~~~~~v 216 (282)
- +.+.| ++.+.-.++++.+.|...-.+++.|++++|.. .+.|....+. ....|.+++..++.. ...++
T Consensus 1001 g~I~FsP----PLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG---~pVLV 1073 (1713)
T PLN02976 1001 ETIKFSP----PLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVG---APVLI 1073 (1713)
T ss_pred cccccCC----cccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCC---CCEEE
Confidence 1 22222 23334456688999999999999999998753 3344332221 112345555544421 13566
Q ss_pred EEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC--CCCcceeeeeccCc
Q 023469 217 LHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWYR 272 (282)
Q Consensus 217 ~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~--~~~P~~~~~~rW~~ 272 (282)
....+..+...... +++++.+.+++.|+++++. .+.|..+.+++|..
T Consensus 1074 afv~G~aAreiEsL---------SDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWss 1122 (1713)
T PLN02976 1074 ALVVGKAAIDGQSM---------SSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGR 1122 (1713)
T ss_pred EEeccHhHHHHhhC---------CHHHHHHHHHHHHHHHcCcccccCcceeEEecCCC
Confidence 66666665544344 7789999999999998764 36899999999975
No 15
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.27 E-value=4.3e-11 Score=108.62 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=144.0
Q ss_pred CCccEEeCCCchHHHHHHhcCCC---CeeEcceeEEEEEeecCCCCeEEEcc--CCCccccccEEEecCCCCCcchhhhh
Q 023469 68 MNKKYVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDV 142 (282)
Q Consensus 68 ~~~~yvg~~Gm~~l~~~La~~l~---~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVla~~~~pa~~~~~l 142 (282)
....|..++||+.++++|.+.++ +.|.++-.+..+.. ...+.|.+.+. ++.....++.+++| +|++.++.+
T Consensus 238 ~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk-~~~~~~~~tl~~~~~~~~~~~~~~~~t---~~~~k~a~l 313 (491)
T KOG1276|consen 238 KWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSK-SRSGNWSLTLVDHSGTQRVVVSYDAAT---LPAVKLAKL 313 (491)
T ss_pred ccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccc-cccCCceeEeEcCCCceeeeccccccc---cchHHhhhh
Confidence 45678889999999999999886 34577777777765 24556988764 44443456777778 999999999
Q ss_pred cCCCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccce--Eec--C---CCceEEEeeCCCCCCCCCCCCeE
Q 023469 143 TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGF--SFQ--D---SEVLSWAHCDSSKPGRSANSERW 215 (282)
Q Consensus 143 l~~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~--~~~--~---~~~l~wi~~~sskpgr~~~~~~~ 215 (282)
+. ...+.++..|.+++|.|+++|.+-|+++....|..|| ++| . .+.|+-|++....|.|.+. ..+
T Consensus 314 l~-------~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s-~~v 385 (491)
T KOG1276|consen 314 LR-------GLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPS-PKV 385 (491)
T ss_pred cc-------ccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCC-ceE
Confidence 86 4556778889999999999999999987433455554 777 2 2358877654555888863 367
Q ss_pred EEEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcceeeeeccCccccc
Q 023469 216 VLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWYRRSNI 276 (282)
Q Consensus 216 v~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~~P~~~~~~rW~~A~P~ 276 (282)
++.....|+. +.... . .+.|++++.+.++++.+++....|....+|.|+.++|+
T Consensus 386 tvm~gg~~~~-n~~~~---~---~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPq 439 (491)
T KOG1276|consen 386 TVMMGGGGST-NTSLA---V---PSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQ 439 (491)
T ss_pred EEEecccccc-cCcCC---C---CCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccc
Confidence 7777777777 42221 1 28899999999999999888888999999999999996
No 16
>PLN02676 polyamine oxidase
Probab=99.21 E-value=7.3e-10 Score=105.77 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=122.5
Q ss_pred CCCchHHHHHHhcCC---------CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh-hcC
Q 023469 75 VPGMNSICKALCHQP---------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTG 144 (282)
Q Consensus 75 ~~Gm~~l~~~La~~l---------~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~ 144 (282)
.+|+++|++.|++.+ +.+|+++++|.+|.. .++++.|.+.+|+.+ .+|+||+| +|...+.. .+.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--~~~gV~V~~~~G~~~-~a~~VIvt---vPl~vLk~~~I~ 293 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--SKNGVTVKTEDGSVY-RAKYVIVS---VSLGVLQSDLIK 293 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE--cCCcEEEEECCCCEE-EeCEEEEc---cChHHhccCceE
Confidence 579999999999865 256999999999997 677899999888654 79999999 88877654 222
Q ss_pred CCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCC--ccceEecCCC---ceEEEeeCCCCCCCCCCCCeEEEEe
Q 023469 145 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSE---VLSWAHCDSSKPGRSANSERWVLHS 219 (282)
Q Consensus 145 ~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~--~~g~~~~~~~---~l~wi~~~sskpgr~~~~~~~v~~~ 219 (282)
..| ++.+...++++.+.|.....+.+.|++++|+.. ..++...+.. .-.|...+.+.|+. .++++..
T Consensus 294 F~P----~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~ 365 (487)
T PLN02676 294 FKP----PLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGS----NVLFVTV 365 (487)
T ss_pred EeC----CCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCC----CEEEEEe
Confidence 222 233345677889999999999999999987421 1222222211 11233223333332 3566666
Q ss_pred CHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC-CCCCcceeeeeccCc
Q 023469 220 TADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWYR 272 (282)
Q Consensus 220 ~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~-~~~~P~~~~~~rW~~ 272 (282)
..+.+...-.. ++++..+.+++.|+++++ ..+.|.....++|..
T Consensus 366 ~g~~a~~~~~~---------s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~ 410 (487)
T PLN02676 366 TDEESRRIEQQ---------PDSETKAEIMEVLRKMFGPNIPEATDILVPRWWS 410 (487)
T ss_pred chHHHHHHHhC---------CHHHHHHHHHHHHHHHhCCCCCCcceEEecccCC
Confidence 66665544344 788999999999999875 345788889999975
No 17
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.20 E-value=1.7e-10 Score=106.02 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=133.8
Q ss_pred CccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccC-CCccccccEEEecCCCCCcchhhhhcCCCC
Q 023469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (282)
Q Consensus 69 ~~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~-G~~~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (282)
.++|--.+||..|+++++++++..|+++++|.+|.. .++++.|++.+ |+- .+|.+|+| +|...+.++. ..|
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q--~~~gV~Vt~~~~~~~--~ad~~i~t---iPl~~l~qI~-f~P 270 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ--DGDGVTVTADDVGQY--VADYVLVT---IPLAILGQID-FAP 270 (450)
T ss_pred chhhccCccHHHHHHHHHHHhhceEEecCceeeEEE--cCCeEEEEeCCcceE--EecEEEEe---cCHHHHhhcc-cCC
Confidence 344544589999999999999999999999999997 88899999887 433 68999999 8877666653 221
Q ss_pred CCCCCcchHHHHHhccCCCcceeEEEEeccCCCCC-CC-ccceEecCCCceEEEeeCCCCCCCCCCCCeEEEEeCHHHHH
Q 023469 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-IP-VKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYAR 225 (282)
Q Consensus 148 ~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~-~~-~~g~~~~~~~~l~wi~~~sskpgr~~~~~~~v~~~~~~~s~ 225 (282)
.+.++..++++.++|.++....+.|++|+|+ .. +.|..+.|.. +..++.+|+ +... ..-|++.+..|+.
T Consensus 271 ----~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~~~---G~gVl~g~~~~g~ 341 (450)
T COG1231 271 ----LLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PFAD---GPGVLLGSYAFGD 341 (450)
T ss_pred ----CCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-ccCC---CceEEEeeeeccc
Confidence 2445788888999999999999999999985 34 6776666654 777877777 4433 2346666544444
Q ss_pred HhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC-CCCC-cceeeeeccCc
Q 023469 226 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPL-PIFRKAHRWYR 272 (282)
Q Consensus 226 ~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~-~~~~-P~~~~~~rW~~ 272 (282)
.-..... .++++..+.++..+.++++ .... ..+...++|..
T Consensus 342 ~A~~~~~------~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~ 384 (450)
T COG1231 342 DALVIDA------LPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSK 384 (450)
T ss_pred cceeEec------CCHHHHHHHHHHhHhhhCChhhccccccceeeeccc
Confidence 4322211 2788999999999999987 3333 44548899965
No 18
>PLN02568 polyamine oxidase
Probab=99.17 E-value=1.7e-09 Score=104.32 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=126.1
Q ss_pred ccEEeCCCchHHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh-------
Q 023469 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD------- 141 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~------- 141 (282)
..+...+||++|+++|++.+. .+|+++++|.+|++ .+++|.|.+.+|+.+ .||+||+| +|...+..
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~--~~~~v~V~~~dG~~~-~aD~VIvT---vPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW--QDEPVKLHFADGSTM-TADHVIVT---VSLGVLKAGIGEDSG 306 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE--eCCeEEEEEcCCCEE-EcCEEEEc---CCHHHHhhccccccc
Confidence 356678999999999999884 56999999999998 677899998888654 79999999 99988774
Q ss_pred hcCCCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCC-----cc--ceEecCCC-------ceEEEee--CCCC
Q 023469 142 VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP-----VK--GFSFQDSE-------VLSWAHC--DSSK 205 (282)
Q Consensus 142 ll~~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~-----~~--g~~~~~~~-------~l~wi~~--~ssk 205 (282)
.+. | ++.+.-.++++.+.|..+..+.+.|++++|..+ +. .++..+++ ...|+.. +-++
T Consensus 307 ~F~--P----~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (539)
T PLN02568 307 LFS--P----PLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP 380 (539)
T ss_pred eec--C----CCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc
Confidence 232 1 233344677899999999999999999875211 11 11111110 0112210 0111
Q ss_pred CCCCCCCCeEEEEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC-----------------------CCc
Q 023469 206 PGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI-----------------------PLP 262 (282)
Q Consensus 206 pgr~~~~~~~v~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~-----------------------~~P 262 (282)
... ....++....++.+...... +++++++.+++.|+++++.. +.|
T Consensus 381 ~~~--~~~vL~~~~~G~~A~~~e~l---------~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (539)
T PLN02568 381 IHK--NSSVLLSWFAGKEALELEKL---------SDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKF 449 (539)
T ss_pred cCC--CCCEEEEEeccHHHHHHHcC---------CHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCC
Confidence 111 12467777777766655444 78899999999999987521 358
Q ss_pred ceeeeeccCcccccc
Q 023469 263 IFRKAHRWYRRSNIT 277 (282)
Q Consensus 263 ~~~~~~rW~~A~P~~ 277 (282)
..+.+++|.. -|..
T Consensus 450 ~~~~~t~W~~-dp~~ 463 (539)
T PLN02568 450 VKVLKSKWGT-DPLF 463 (539)
T ss_pred ceEEeCCCCC-CCcc
Confidence 8889999985 3443
No 19
>PRK07208 hypothetical protein; Provisional
Probab=99.14 E-value=9.6e-10 Score=104.70 Aligned_cols=183 Identities=12% Similarity=0.017 Sum_probs=116.6
Q ss_pred CCCchHHHHHHhcCC---CCeeEcceeEEEEEeecCCCCeE--EEc--cCCCc-cccccEEEecCCCCCcchhhhhcCCC
Q 023469 75 VPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSG--LDGQS-LGQFNGVVASDKNVVSPRFRDVTGRP 146 (282)
Q Consensus 75 ~~Gm~~l~~~La~~l---~~~v~~~~~V~~i~~~~~~~~w~--l~~--~~G~~-~~~~d~VVla~~~~pa~~~~~ll~~p 146 (282)
++||++|++.|++.+ +.+|+++++|.+|.. ++++|. +.. .+|+. ...+|+||+| +|++.+..+|. |
T Consensus 214 ~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~--~~~~~v~~~~~~~~~g~~~~~~ad~VI~a---~p~~~l~~~l~-~ 287 (479)
T PRK07208 214 KLGPGQLWETAAEKLEALGGKVVLNAKVVGLHH--DGDGRIAVVVVNDTDGTEETVTADQVISS---MPLRELVAALD-P 287 (479)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEE--cCCcEEEEEEEEcCCCCEEEEEcCEEEEC---CCHHHHHHhcC-C
Confidence 789999999998765 678999999999997 555553 332 23531 1268999999 99999998875 2
Q ss_pred CCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccceEecCCC-ceEEEeeCCC-CCCCCCCCCeEEEE--eCHH
Q 023469 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSE-VLSWAHCDSS-KPGRSANSERWVLH--STAD 222 (282)
Q Consensus 147 ~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~~-~l~wi~~~ss-kpgr~~~~~~~v~~--~~~~ 222 (282)
.+.++..+.++.++|.++.++.++|+++.. .+.....+++.+ .+.-+..-+. -|.+.|.+...++. ....
T Consensus 288 -----~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~ 361 (479)
T PRK07208 288 -----PPPPEVRAAAAGLRYRDFITVGLLVKELNL-FPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCF 361 (479)
T ss_pred -----CCCHHHHHHHhCCCcceeEEEEEEecCCCC-CCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEcc
Confidence 233466677889999999999999998743 232222232211 1111111111 13333432211221 1100
Q ss_pred HHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC-CCCcceeeeeccCccccccc
Q 023469 223 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFRKAHRWYRRSNITC 278 (282)
Q Consensus 223 ~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~-~~~P~~~~~~rW~~A~P~~~ 278 (282)
......+. +++++++.++++|.+++.. ...|.+++++||.+|+|.-.
T Consensus 362 ~~~~~~~~---------~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~ 409 (479)
T PRK07208 362 EGDDLWNM---------SDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYD 409 (479)
T ss_pred CCCccccC---------CHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCC
Confidence 01112233 7789999999999997432 45689999999999999643
No 20
>PLN02612 phytoene desaturase
Probab=98.89 E-value=5e-08 Score=94.92 Aligned_cols=159 Identities=12% Similarity=0.071 Sum_probs=98.0
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCC--eEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCCCCc
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTF 153 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~~~~ 153 (282)
..|++.|++ .+|.+|+++++|.+|+. ++++ +.+.+.+|+.+ .+|+||+| +|++.+..|+.. . ..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~-~ad~VI~a---~p~~~l~~Ll~~--~---~~ 376 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVV-EGDVYVSA---TPVDILKLLLPD--Q---WK 376 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEE-ECCEEEEC---CCHHHHHHhCcc--h---hc
Confidence 455565554 35789999999999987 4444 33555677654 79999999 999888777641 0 01
Q ss_pred chHHHHHhccCCCcceeEEEEeccCCCCCCCccceEecCCCceEEEeeCCCC-CCCCCCCCeEEEEeCHHHHHHhHhhcC
Q 023469 154 APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQTG 232 (282)
Q Consensus 154 ~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~~~l~wi~~~ssk-pgr~~~~~~~v~~~~~~~s~~~~~~~~ 232 (282)
...+.+.+.++.+.++.++.++|+++++ .+.++.++.+.+.+.-...-|.. +...+.+..++. +...-+..+.+.
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~-~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~-~~~~~a~~~~~~-- 452 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLK-NTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLE-LVFAPAEEWISR-- 452 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccC-CCCCceeecCCCCceeehhhhhcchhhcCCCCeEEE-EEEEcChhhhcC--
Confidence 1245556677889999999999999875 34556555443332222111111 211111122222 111112334444
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCC
Q 023469 233 LQKPSEATLKKVAEEMFQEFQGTGLSI 259 (282)
Q Consensus 233 ~~~~~~~~~e~v~~~ll~~l~~l~~~~ 259 (282)
+++++++.++++|+++++..
T Consensus 453 -------sdeei~e~vl~~L~~lfp~~ 472 (567)
T PLN02612 453 -------SDEDIIDATMKELAKLFPDE 472 (567)
T ss_pred -------CHHHHHHHHHHHHHHHCCcc
Confidence 78999999999999998643
No 21
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.85 E-value=1.1e-07 Score=89.93 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=101.3
Q ss_pred chHHHHHHhcC---CCCeeEcceeEEEEEeecCCCC---eEEEccCCCc--cccccEEEecCCCCCcchhhhhcCCCCCC
Q 023469 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS--LGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (282)
Q Consensus 78 m~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~--~~~~d~VVla~~~~pa~~~~~ll~~p~~~ 149 (282)
++.+++.|++. .|.+|+++++|++|.. .+++. +++...+|+. ...+|+||+| +|++.+..||. ..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~-~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a---~p~~~~~~lL~--~~- 284 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL-NEDGSVKHFVLADGEGQRRFEVTADAYVSA---MPVDIFKLLLP--QP- 284 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE-CCCCCEEEEEEecCCCCceeEEECCEEEEc---CCHHHHHhhCc--hh-
Confidence 44455554443 4789999999999985 12332 3443222211 2368999999 99998888873 11
Q ss_pred CCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccceEecCCCceEEEeeCCCC--CCCCCCCCeEEEEeCHHHHHHh
Q 023469 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK--PGRSANSERWVLHSTADYARTV 227 (282)
Q Consensus 150 ~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~~~~~~~l~wi~~~ssk--pgr~~~~~~~v~~~~~~~s~~~ 227 (282)
.....+.+.+..++|.++.++.++|++++. +..++++.+.+.+.-..+-|+. +.+.++...+.+..+. +...
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~ 358 (453)
T TIGR02731 285 --WKQMPFFQKLNGLEGVPVINVHIWFDRKLT--TVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAP--AADW 358 (453)
T ss_pred --hhcCHHHHHhhcCCCCcEEEEEEEEccccC--CCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecC--hhhh
Confidence 001245566778889999999999999864 2345556554433211111111 2222322222222221 1233
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC---CCc---ceeeeeccCcccc
Q 023469 228 IAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI---PLP---IFRKAHRWYRRSN 275 (282)
Q Consensus 228 ~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~---~~P---~~~~~~rW~~A~P 275 (282)
.+. +++++.+.++++|+++++.. ..+ ......+.+|+.+
T Consensus 359 ~~~---------~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~ 403 (453)
T TIGR02731 359 IGR---------SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVY 403 (453)
T ss_pred hcC---------CHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCcee
Confidence 344 88999999999999987631 123 3334445566643
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.72 E-value=1.5e-07 Score=89.72 Aligned_cols=177 Identities=8% Similarity=0.033 Sum_probs=102.8
Q ss_pred chHHHHHHhcCCCCeeEcceeEEEEEeecCC--CCeE-E---EccCCC--ccccccEEEecCCCCCcchhhhhcCCCCCC
Q 023469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWS-V---SGLDGQ--SLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (282)
Q Consensus 78 m~~l~~~La~~l~~~v~~~~~V~~i~~~~~~--~~w~-l---~~~~G~--~~~~~d~VVla~~~~pa~~~~~ll~~p~~~ 149 (282)
++.++++|.+ .|.+|+++++|++|+. ++ ++|. + ...+|+ ....+|+||+| +|++.+++||...
T Consensus 222 ~~pl~~~L~~-~Gg~i~~~~~V~~I~~--~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA---~p~~~~~~Ll~~~--- 292 (474)
T TIGR02732 222 TKPILEYIEA-RGGKFHLRHKVREIKY--EKSSDGSTRVTGLIMSKPEGKKVIKADAYVAA---CDVPGIKRLLPQE--- 292 (474)
T ss_pred HHHHHHHHHH-CCCEEECCCEEEEEEE--ecCCCCceeEEEEEEecCCcceEEECCEEEEC---CChHHHHhhCChh---
Confidence 3447788876 6789999999999986 32 3442 3 343331 21368999999 9999999998510
Q ss_pred CCCcchHHHHHhccCCCcceeEEEEeccCCCCCCC-cc--ceE-----ecC---CCceEEEee-C---CCCCCCCCCCCe
Q 023469 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIP-VK--GFS-----FQD---SEVLSWAHC-D---SSKPGRSANSER 214 (282)
Q Consensus 150 ~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~-~~--g~~-----~~~---~~~l~wi~~-~---sskpgr~~~~~~ 214 (282)
.......+.+..++|.||.+|.+.|+++..... .. ..+ +.+ .....|.+. + .++..-.+.+..
T Consensus 293 --~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (474)
T TIGR02732 293 --WRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQG 370 (474)
T ss_pred --hhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCC
Confidence 001234567788999999999999998653211 00 000 110 011233331 1 011000000111
Q ss_pred EE--EEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCcceeeeeccCccccc
Q 023469 215 WV--LHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWYRRSNI 276 (282)
Q Consensus 215 ~v--~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~--~~P~~~~~~rW~~A~P~ 276 (282)
.+ +..+.. ..+++. +++++++.++++|+++++.. ..+.+..+-|...|.+.
T Consensus 371 ~~l~~~~~~~--~~~~~~---------~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~ 425 (474)
T TIGR02732 371 SLLQCVLTPG--DPWMPE---------SNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR 425 (474)
T ss_pred eEEEEEEeCh--hhhcCC---------CHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec
Confidence 22 222222 344444 88999999999999988642 24566667777776654
No 23
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.64 E-value=1.4e-06 Score=83.33 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=100.6
Q ss_pred EEeCCCchHHHHHHhcCC---CCeeEcceeEEEEEeecCCC--CeEEEccC--C--CccccccEEEecCCCCCcchhhhh
Q 023469 72 YVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKN--LWSVSGLD--G--QSLGQFNGVVASDKNVVSPRFRDV 142 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~l---~~~v~~~~~V~~i~~~~~~~--~w~l~~~~--G--~~~~~~d~VVla~~~~pa~~~~~l 142 (282)
|...+||++|+++|++.+ |.+|+++++|++|.. .++ .|.+..++ | +.+ .+|+||++ +|+..+..|
T Consensus 225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~~~~~~~~~~~-~ad~VI~~---~~~~~~~~l 298 (492)
T TIGR02733 225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT--KGGRAGWVVVVDSRKQEDLNV-KADDVVAN---LPPQSLLEL 298 (492)
T ss_pred eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE--eCCeEEEEEEecCCCCceEEE-ECCEEEEC---CCHHHHHHh
Confidence 446789999999999876 789999999999986 433 24443222 1 233 69999999 999998888
Q ss_pred cCCCCCCCCCcchHHHHHhccCCCcc-eeEEEEeccCCCCCC---CccceEecCCCceEEEeeCCCCCCCCCCCC-eEEE
Q 023469 143 TGRPPPLDLTFAPDLAVKLEEIPVNP-CFALMLAFSEPLSSI---PVKGFSFQDSEVLSWAHCDSSKPGRSANSE-RWVL 217 (282)
Q Consensus 143 l~~p~~~~~~~~~~~~~~l~~v~~~p-~~~v~l~~~~~~~~~---~~~g~~~~~~~~l~wi~~~sskpgr~~~~~-~~v~ 217 (282)
+.. + .+.++..+.+++++|++ .+++++++++..... +...+.+.....+ +++..+..|+++|.+. .+++
T Consensus 299 l~~-~----~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~aP~G~~~l~~ 372 (492)
T TIGR02733 299 LGP-L----GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSL-FVSISQEGDGRAPQGEATLIA 372 (492)
T ss_pred cCc-c----cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceE-EEEeCCccccCCCCCceEEEE
Confidence 742 1 23345666788888887 558889998743111 1112222222222 3444333477776442 2222
Q ss_pred EeCH---HHH---HHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC
Q 023469 218 HSTA---DYA---RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL 257 (282)
Q Consensus 218 ~~~~---~~s---~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~ 257 (282)
.+.. .|. ...++. .++++.+.+++.+++.++
T Consensus 373 ~~~~~~~~~~~~~~~~y~~---------~k~~~~~~il~~le~~~p 409 (492)
T TIGR02733 373 SSFTDTNDWSSLDEEDYTA---------KKKQYTQTIIERLGHYFD 409 (492)
T ss_pred EcCCCHHHHcCCCHHHHHH---------HHHHHHHHHHHHHHHHCC
Confidence 3221 221 111121 456788899999987754
No 24
>PLN02487 zeta-carotene desaturase
Probab=98.35 E-value=7.9e-06 Score=79.37 Aligned_cols=179 Identities=8% Similarity=0.046 Sum_probs=103.5
Q ss_pred EEeCCCchH-HHHHHhcC---CCCeeEcceeEEEEEeecCCCC----eEEEc---cCCCccccccEEEecCCCCCcchhh
Q 023469 72 YVGVPGMNS-ICKALCHQ---PGVESKFGVGVGRFEWLEDKNL----WSVSG---LDGQSLGQFNGVVASDKNVVSPRFR 140 (282)
Q Consensus 72 yvg~~Gm~~-l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~----w~l~~---~~G~~~~~~d~VVla~~~~pa~~~~ 140 (282)
...++|+.. |++.+++. .|.+|+++++|++|....++++ +.+.. .+++.+ .+|+||+| +|++.+.
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~-~aD~VV~A---~p~~~~~ 362 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIV-KADAYVAA---CDVPGIK 362 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEE-ECCEEEEC---CCHHHHH
Confidence 344678985 77766654 4789999999999987211233 34444 223233 68999999 9999998
Q ss_pred hhcCCCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCC----------CccceEe-cCCCceEEEe--e---CC-
Q 023469 141 DVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSI----------PVKGFSF-QDSEVLSWAH--C---DS- 203 (282)
Q Consensus 141 ~ll~~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~----------~~~g~~~-~~~~~l~wi~--~---~s- 203 (282)
.|+. ... ... ...+.+..+.+.||.+|.+.|+++.... ++.|+-- -....-.|.+ . ++
T Consensus 363 ~Llp--~~~--~~~-~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~ 437 (569)
T PLN02487 363 RLLP--EQW--REY-EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSP 437 (569)
T ss_pred HhCC--chh--hcc-HHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCH
Confidence 8874 210 111 2245677888999999999999875321 1222100 0001112222 1 11
Q ss_pred ---CCCCCCCCCCeEEEEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCC--CcceeeeeccCcc
Q 023469 204 ---SKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWYRR 273 (282)
Q Consensus 204 ---skpgr~~~~~~~v~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~~~~--~P~~~~~~rW~~A 273 (282)
.+++ .+.. +...-.-+..+.+. +++++++.++++|+++++... .+.+..+-|.+.|
T Consensus 438 ~~~~~~~---~g~~--l~~vis~a~~~~~~---------~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~a 498 (569)
T PLN02487 438 EDYYKEG---EGSL--IQAVLTPGDPYMPL---------SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQS 498 (569)
T ss_pred HHHcccC---CceE--EEEEEcCCccccCC---------CHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCc
Confidence 0111 1121 22211112244454 889999999999999876422 3556556555544
No 25
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=1.4e-05 Score=76.53 Aligned_cols=179 Identities=14% Similarity=0.189 Sum_probs=122.6
Q ss_pred ccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh-hcCCCCC
Q 023469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPP 148 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~~p~~ 148 (282)
.+....+|+..+...|++ +.+|+++.+|..|.+ .+++...++.+++... .+|+||+| +|.+.+.. .....|
T Consensus 210 ~~~~~~~G~~~v~~~la~--~l~I~~~~~v~~i~~-~~~~~~~~~~~~~~~~-~~d~vvvt---~pl~vLk~~~i~F~P- 281 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAE--GLDIHLNKRVRKIKY-GDDGAVKVTVETGDGY-EADAVVVT---VPLGVLKSGLIEFSP- 281 (501)
T ss_pred chhHhhCCccHHHhhcCC--CcceeeceeeEEEEE-ecCCceEEEEECCCee-EeeEEEEE---ccHHHhccCceeeCC-
Confidence 456778899999999998 456999999999998 2333234454445433 79999999 88887655 221112
Q ss_pred CCCCcchHHHHHhccCCCcceeEEEEeccCCCCC--CCccceEecCCCceEE--EeeCCCCCCCCCCCCeEEEEeCHHHH
Q 023469 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSEVLSW--AHCDSSKPGRSANSERWVLHSTADYA 224 (282)
Q Consensus 149 ~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~--~~~~g~~~~~~~~l~w--i~~~sskpgr~~~~~~~v~~~~~~~s 224 (282)
++......+++.+.+.+.-.+++.|++.+|. ..+.|. ++......+ .+++..+ - .....++.....+-+
T Consensus 282 ---~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~-~~~~~~~~~~~~f~~~~~-~--~~~~~l~~~~~~~~a 354 (501)
T KOG0029|consen 282 ---PLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGI-VPETSVLRGLFTFYDCKP-V--AGHPVLMSVVVGEAA 354 (501)
T ss_pred ---CCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEE-ccccccccchhhhhhcCc-c--CCCCeEEEEehhhhh
Confidence 2333566789999999999999999999884 234442 223223333 2233333 1 112345666655555
Q ss_pred HHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC--CCCCcceeeeeccCc
Q 023469 225 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWYR 272 (282)
Q Consensus 225 ~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~--~~~~P~~~~~~rW~~ 272 (282)
+..... +++++++.++..++++++ ..+.|..+.+.||.-
T Consensus 355 ~~~~~~---------~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~ 395 (501)
T KOG0029|consen 355 ERVETL---------SDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGT 395 (501)
T ss_pred HHHhcC---------CHHHHHHHHHHHHHHHhccCcCCCccceeeeeecc
Confidence 555555 889999999999999877 567899999999975
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.12 E-value=5.6e-05 Score=72.54 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=66.7
Q ss_pred EEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCC-CeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCC
Q 023469 72 YVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~-~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (282)
|...+||..++++|++. .|++|+++++|.+|.. .++ .|.|.+++|+.+ .+|.||+| ++.+.+...| ++.
T Consensus 212 ~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g~~~-~ad~VI~a---~~~~~~~~~l-~~~ 284 (502)
T TIGR02734 212 WFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADGERL-DADAVVSN---ADLHHTYRRL-LPN 284 (502)
T ss_pred EEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCCCEE-ECCEEEEC---CcHHHHHHHh-cCc
Confidence 44568999999999874 4789999999999986 443 377888788654 79999999 8887776544 222
Q ss_pred CCCCCcch-HHHHHhccCCCc-ceeEEEEecc
Q 023469 148 PLDLTFAP-DLAVKLEEIPVN-PCFALMLAFS 177 (282)
Q Consensus 148 ~~~~~~~~-~~~~~l~~v~~~-p~~~v~l~~~ 177 (282)
...+ ...+.++.++++ ++++++++++
T Consensus 285 ----~~~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 285 ----HPRRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred ----cccccccccccccCCcCCeeeEEEEeec
Confidence 1111 223344555544 6788888887
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.98 E-value=0.00038 Score=66.75 Aligned_cols=172 Identities=10% Similarity=0.093 Sum_probs=98.2
Q ss_pred EEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhh-hhcCCCC
Q 023469 72 YVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR-DVTGRPP 147 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~-~ll~~p~ 147 (282)
|.-.+|+..++++|++. .|++|+++++|.+|.. .+++.+.+.+.+|+.+ .+|.||++ +.+..+. .|+. .
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~-~ad~vV~a---~~~~~~~~~Ll~--~ 294 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKI-YAKRIVSN---ATRWDTFGKLLK--A 294 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEE-EcCEEEEC---CChHHHHHHhCC--c
Confidence 55678999999988775 4689999999999986 2344577777778654 79999998 6555444 4553 1
Q ss_pred CCCCCcchHHHHHhccCCCc-ceeEEEEeccCCC-CC-CCccceEec------CCCceEEEeeCCCC-CCCCCCCCeEEE
Q 023469 148 PLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEPL-SS-IPVKGFSFQ------DSEVLSWAHCDSSK-PGRSANSERWVL 217 (282)
Q Consensus 148 ~~~~~~~~~~~~~l~~v~~~-p~~~v~l~~~~~~-~~-~~~~g~~~~------~~~~l~wi~~~ssk-pgr~~~~~~~v~ 217 (282)
. ...+.....++.++++ ++++++++++.+. +. ....-+++. ..++.-+++.-|.+ |.++|.+ +.++
T Consensus 295 ~---~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G-~~~i 370 (493)
T TIGR02730 295 E---NLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEG-HHII 370 (493)
T ss_pred c---ccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCC-cEEE
Confidence 1 1122333444555555 5889999998743 11 010111111 11223345554555 7887754 3344
Q ss_pred EeC-HHHHHHhHhhcCCCCC-ChhhHHHHHHHHHHHHHhcCC
Q 023469 218 HST-ADYARTVIAQTGLQKP-SEATLKKVAEEMFQEFQGTGL 257 (282)
Q Consensus 218 ~~~-~~~s~~~~~~~~~~~~-~~~~~e~v~~~ll~~l~~l~~ 257 (282)
.+. +.+...+.+. ... .++.++++.+.+++.+++.++
T Consensus 371 ~~~~~~~~~~w~~~---~~~~y~~~k~~~~~~il~~l~~~~p 409 (493)
T TIGR02730 371 HTFTPSSMEDWQGL---SPKDYEAKKEADAERIIDRLEKIFP 409 (493)
T ss_pred EEecCCChhhccCC---CcHHHHHHHHHHHHHHHHHHHHHCC
Confidence 332 2111110000 000 011456788899999888764
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.95 E-value=4.7e-05 Score=68.31 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=79.1
Q ss_pred ccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCC
Q 023469 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~ 149 (282)
.-++-.+|-.+-++.|+++...+|+++++|.+|.+ -.++..|...+|+. ..||+||+| +.++|++.||..
T Consensus 211 ~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r--lPdGv~l~~~~G~s-~rFD~vViA---th~dqAl~mL~e---- 280 (447)
T COG2907 211 TWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR--LPDGVVLVNADGES-RRFDAVVIA---THPDQALALLDE---- 280 (447)
T ss_pred ceeEcccchHHHHHHHhccccceeecCCceeeeee--CCCceEEecCCCCc-cccceeeee---cChHHHHHhcCC----
Confidence 44566789999999999988888999999999998 66677777777865 479999999 999999999963
Q ss_pred CCCcchHHHHHhccCCCcceeEEEEeccC
Q 023469 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSE 178 (282)
Q Consensus 150 ~~~~~~~~~~~l~~v~~~p~~~v~l~~~~ 178 (282)
..|+-.+.+.++.|+..-+|...+..
T Consensus 281 ---~sp~e~qll~a~~Ys~n~aVlhtd~~ 306 (447)
T COG2907 281 ---PSPEERQLLGALRYSANTAVLHTDAS 306 (447)
T ss_pred ---CCHHHHHHHHhhhhhhceeEEeeccc
Confidence 23455568999999999888877663
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.66 E-value=0.00063 Score=63.49 Aligned_cols=174 Identities=17% Similarity=0.246 Sum_probs=111.0
Q ss_pred EeCCCchHHHHHHhcCCC-C--------eeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhh--
Q 023469 73 VGVPGMNSICKALCHQPG-V--------ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-- 141 (282)
Q Consensus 73 vg~~Gm~~l~~~La~~l~-~--------~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-- 141 (282)
....|...+.+.|++.+. . +++++++|..|.+ ...+...|++.||+.. .||+||+| ++-=.+..
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~-~~~~~v~l~c~dg~v~-~adhVIvT---vsLGvLk~~h 291 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINW-KNTGEVKLRCSDGEVF-HADHVIVT---VSLGVLKEQH 291 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeecc-CCCCcEEEEEeCCcEE-eccEEEEE---eechhhhhhh
Confidence 345678888888887543 2 3455599999997 3446688999999875 89999999 55544333
Q ss_pred --hcCCCCCCCCCcchHHHHHhccCCCcceeEEEEeccCCCCCCCccceE-ecCCCce--------EEE------eeCCC
Q 023469 142 --VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFS-FQDSEVL--------SWA------HCDSS 204 (282)
Q Consensus 142 --ll~~p~~~~~~~~~~~~~~l~~v~~~p~~~v~l~~~~~~~~~~~~g~~-~~~~~~l--------~wi------~~~ss 204 (282)
|+. | ++...=.+++.++.+...-.+.+-|++|.+..++.++. +..++.+ .|. ..-+.
T Consensus 292 ~~lF~-P-----~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~ 365 (498)
T KOG0685|consen 292 HKLFV-P-----PLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW 365 (498)
T ss_pred hhhcC-C-----CCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc
Confidence 553 2 12224457889999999999999999998755566642 2121210 011 00111
Q ss_pred CCCCCCCCCeEEEEeCHHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC--CCCCcceeeeeccCc
Q 023469 205 KPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWYR 272 (282)
Q Consensus 205 kpgr~~~~~~~v~~~~~~~s~~~~~~~~~~~~~~~~~e~v~~~ll~~l~~l~~--~~~~P~~~~~~rW~~ 272 (282)
-| | -..+|+.=..+ ++++. .++|+|.+.+..-|++.++ ..|.|.-..-+.|..
T Consensus 366 ~~-~--vL~gWiaG~~~----~~me~--------lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~s 420 (498)
T KOG0685|consen 366 AP-N--VLLGWIAGREA----RHMET--------LSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWIS 420 (498)
T ss_pred ch-h--hhheeccCCcc----eehhh--------CCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccC
Confidence 11 1 11234432222 23332 3889999999999998754 567787777788854
No 30
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.58 E-value=0.016 Score=48.17 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=36.7
Q ss_pred chHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 78 m~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
+..-.+.+++..+.+++++++|.++++ .+++|.|++.+|..+ .+|.||+|
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~--~~~~w~v~~~~~~~~-~a~~VVlA 133 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRR--DGDGWTVTTRDGRTI-RADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEE--ETTTEEEEETTS-EE-EEEEEEE-
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEE--eccEEEEEEEeccee-eeeeEEEe
Confidence 444455666666778999999999998 677799999888554 69999999
No 31
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.28 E-value=0.051 Score=50.17 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=49.1
Q ss_pred CccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCC--eEEEccC--CCccccccEEEecCCCCCcchh
Q 023469 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD--GQSLGQFNGVVASDKNVVSPRF 139 (282)
Q Consensus 69 ~~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~--w~l~~~~--G~~~~~~d~VVla~~~~pa~~~ 139 (282)
...|.-.+|...|++.|.+..+.++ ++++|++|.....++. |.|...+ +.....||.|||| +|-.+.
T Consensus 118 ~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA---tPl~~~ 188 (368)
T PF07156_consen 118 GGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA---TPLQQS 188 (368)
T ss_pred CCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC---CCcccc
Confidence 4567778999999999999988889 9999999943123332 6675543 3333468999999 787543
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.84 E-value=0.046 Score=52.49 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=46.0
Q ss_pred cEEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 71 ~yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
.+...+||++|+++|++. .|++|+++++|.+|.. .++++..+...+|.. ..+|.||.+
T Consensus 216 ~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~-~~ad~vv~~ 276 (487)
T COG1233 216 VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGEN-IEADAVVSN 276 (487)
T ss_pred eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccce-eccceeEec
Confidence 456678999999999984 4789999999999986 244467777777733 378999998
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=94.28 E-value=0.12 Score=48.92 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=43.9
Q ss_pred eCCCchHHHHHHh---cCCCCeeEcceeEEEEEeecCCCC--eEEEccCCCccccccEEEec
Q 023469 74 GVPGMNSICKALC---HQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 74 g~~Gm~~l~~~La---~~l~~~v~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVla 130 (282)
...||+.|+++|+ +..|.+++++++|.+|.. ++++ +.|.+.+|+.+ .++.||+.
T Consensus 227 p~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i-~a~~VV~~ 285 (443)
T PTZ00363 227 PLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVA-KCKLVICD 285 (443)
T ss_pred eCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEE-ECCEEEEC
Confidence 3789999999998 446789999999999986 4333 77888888764 68999987
No 34
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.80 E-value=0.13 Score=47.59 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=50.9
Q ss_pred CccEEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcc
Q 023469 69 NKKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (282)
Q Consensus 69 ~~~yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~ 137 (282)
...|.-...-+.|++.|... .+++|+++++|.+|.+ .+.+++|++.+|+.+ .+|.+|||.-+...|
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i-~~d~lilAtGG~S~P 169 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETV-KCDSLILATGGKSWP 169 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEE-EccEEEEecCCcCCC
Confidence 33444446677788887765 4689999999999997 667899999999643 799999997655555
No 35
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=92.84 E-value=5.8 Score=36.28 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=38.1
Q ss_pred chHHHHHHhcC----CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 78 MNSICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 78 m~~l~~~La~~----l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
...+.+.|.+. .+++++++++|.+|.. .+++|.+..++|+.+ .+|.||.|+
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vV~Ad 158 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIR--NQDYVRVTLDNGQQL-RAKLLIAAD 158 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 34555555542 3678999999999986 667898888777643 799999993
No 36
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.55 E-value=0.18 Score=45.32 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=37.8
Q ss_pred chHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeE-EEccCCCccccccEEEec
Q 023469 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 78 m~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~-l~~~~G~~~~~~d~VVla 130 (282)
...++++|.+. .|++++.+++|.+|.. ++++|+ |.+++|+ + .+|.||+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~gv~~~~g~-i-~ad~vV~a 198 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV--DGGRVTGVRTSDGE-I-RADRVVLA 198 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE--ETTEEEEEEETTEE-E-EECEEEE-
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh--cccccccccccccc-c-ccceeEec
Confidence 45555555543 5789999999999998 778898 9999986 4 78999999
No 37
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=92.22 E-value=0.22 Score=46.69 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=39.5
Q ss_pred cEEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCC-eEEEccCCCccccccEEEecCCCCCcch
Q 023469 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (282)
Q Consensus 71 ~yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (282)
-|....-..++.+.|.+. ++++|+++++|.+|.. .+++ |.|.++++..+ .+|+||||.=+...|+
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~~~-~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGGEY-EADAVILATGGKSYPK 169 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTEEE-EESEEEE----SSSGG
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCcccc-cCCEEEEecCCCCccc
Confidence 355555677888877653 4789999999999987 4445 99988555444 7999999954444443
No 38
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.96 E-value=0.4 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.7
Q ss_pred EcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 94 KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 94 ~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
+...+|..|++ .+++|.|.+.+|..+ .||+||||
T Consensus 119 ~~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~VvLa 152 (156)
T PF13454_consen 119 HVRAEVVDIRR--DDDGYRVVTADGQSI-RADAVVLA 152 (156)
T ss_pred EEeeEEEEEEE--cCCcEEEEECCCCEE-EeCEEEEC
Confidence 35669999998 778899998899765 89999999
No 39
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.67 E-value=0.41 Score=44.16 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=37.5
Q ss_pred hHHHHHHhcCC--CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l--~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..+++.|++.+ +++++.+++|.+|+. .+++|.+.+.+|..+ .+|+||+|
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~a~~vV~a 185 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLER--DGEGWQLLDANGEVI-AASVVVLA 185 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEE--cCCeEEEEeCCCCEE-EcCEEEEc
Confidence 44555555432 678999999999987 667899988888643 68999999
No 40
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=89.98 E-value=0.73 Score=43.41 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=45.1
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCC-CeEEEccCCCc-cccccEEEecCCCCCcchhhhhcCCCC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQS-LGQFNGVVASDKNVVSPRFRDVTGRPP 147 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~-~w~l~~~~G~~-~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (282)
.++++.+.+. +.+++++++|..|++ .++ .+.+.+.+|+. + .++.||.+ .+.-+..++++.+.+.
T Consensus 157 ~~l~e~a~~~-g~~i~ln~eV~~i~~--~~dg~~~~~~~~g~~~~-~ak~Vin~-AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 157 RALAEEAQAN-GVELRLNTEVTGIEK--QSDGVFVLNTSNGEETL-EAKFVINA-AGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHc-CCEEEecCeeeEEEE--eCCceEEEEecCCcEEE-EeeEEEEC-CchhHHHHHHHhCCCc
Confidence 4455554443 789999999999998 555 57777788864 3 68888887 3445666777776554
No 41
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.90 E-value=1 Score=43.42 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=35.5
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecC-CCCeEEE---ccCCC--ccccccEEEec
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVS---GLDGQ--SLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~-~~~w~l~---~~~G~--~~~~~d~VVla 130 (282)
.++++.+.+..++++++++.|..|++ . +++|++. +.+|+ .+ .+|.||++
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i-~Ad~VV~A 242 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQ-VADYVFIG 242 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEE-EcCEEEEC
Confidence 45566654444688999999999987 5 6789886 33442 23 79999998
No 42
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.09 E-value=0.54 Score=44.89 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=34.9
Q ss_pred hHHHHHHhc---CCCCe--eEcceeEEEEEeecCCCCeEEEccCCC-c--cccccEEEec
Q 023469 79 NSICKALCH---QPGVE--SKFGVGVGRFEWLEDKNLWSVSGLDGQ-S--LGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~---~l~~~--v~~~~~V~~i~~~~~~~~w~l~~~~G~-~--~~~~d~VVla 130 (282)
..+.++|.+ ..+++ |+++++|.+|++ .+++|.|.+.++. . ...||+||+|
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 445555543 34444 899999999997 6678999875432 1 1268999998
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=89.03 E-value=0.9 Score=42.38 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHhcCC-CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l-~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.|.+.+ ...++++++|.+|+. .+++|.+.+++|+.. .+|.||.|+
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vVgAD 155 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEE--QAEEVQVLFTDGTEY-RCDLLIGAD 155 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEe--cCCcEEEEEcCCCEE-EeeEEEECC
Confidence 5677777765 356899999999987 677899998888653 799999994
No 44
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=87.66 E-value=8.1 Score=36.68 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=48.6
Q ss_pred EeCCCchHHHHHHhcCC---CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcC
Q 023469 73 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG 144 (282)
Q Consensus 73 vg~~Gm~~l~~~La~~l---~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~ 144 (282)
.-.+||+++++++++.+ |.+|.+...|.+|.- ..+...-|...||+++ .. .+|++ |..|......|+.
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev-~s-k~VvS-NAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEV-RS-KIVVS-NATPWDTFEKLLP 328 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEE-Ee-eeeec-CCchHHHHHHhCC
Confidence 33789999999999854 578999999999985 2333355667789765 34 44443 5577777778764
No 45
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=86.93 E-value=25 Score=32.25 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+.|.+++.+.-++ .+++++|.+++. .+++|.+..++|+.+ .+|.||.|+
T Consensus 115 ~~L~~~~~~~~~~-~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (388)
T PRK07494 115 RALEARVAELPNI-TRFGDEAESVRP--REDEVTVTLADGTTL-SARLVVGAD 163 (388)
T ss_pred HHHHHHHhcCCCc-EEECCeeEEEEE--cCCeEEEEECCCCEE-EEeEEEEec
Confidence 3444444432234 488999999987 677899988887654 789999994
No 46
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=85.95 E-value=0.77 Score=44.65 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=39.2
Q ss_pred CCCccEEeCCCchHHHHHHhcCCC--CeeEcceeEEEEEeecC---CCCeEEEccC-CC-ccccccEEEec
Q 023469 67 GMNKKYVGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLED---KNLWSVSGLD-GQ-SLGQFNGVVAS 130 (282)
Q Consensus 67 ~~~~~yvg~~Gm~~l~~~La~~l~--~~v~~~~~V~~i~~~~~---~~~w~l~~~~-G~-~~~~~d~VVla 130 (282)
++.+.|....-|..=.+..|+..+ ..|+++|.|.+|++..+ .++|.|++.+ |+ ....||+||+|
T Consensus 75 ~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvva 145 (531)
T PF00743_consen 75 EDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVA 145 (531)
T ss_dssp CCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEc
Confidence 334555543333333444444333 46999999999997322 2469998754 32 22369999998
No 47
>PRK09126 hypothetical protein; Provisional
Probab=85.94 E-value=1.9 Score=39.78 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
|.+.+.+..+++|+++++|.+++. .++++.+.+++|+.+ .+|.||.|+
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRT--DDDGAQVTLANGRRL-TARLLVAAD 163 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEE--cCCeEEEEEcCCCEE-EeCEEEEeC
Confidence 344444445788999999999986 667788888788654 789999994
No 48
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=85.67 E-value=30 Score=32.03 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.+.+..+++++++++|.+++. +++++.+..++|+.+ .+|.||.|+
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~lvIgAD 164 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAV--GESEAWLTLDNGQAL-TAKLVVGAD 164 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEe--eCCeEEEEECCCCEE-EeCEEEEeC
Confidence 3444444433578999999999986 667788888888654 789999994
No 49
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.29 E-value=2.2 Score=39.30 Aligned_cols=48 Identities=27% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
|.+.+.+..+.+++++++|.++.. .+++|.+++++|..+ .+|.||.|+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVER--TQGSVRVTLDDGETL-TGRLLVAAD 165 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 444444434678999999999986 677899988777543 789999994
No 50
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=85.12 E-value=1.8 Score=40.22 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=43.0
Q ss_pred EEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcch
Q 023469 72 YVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (282)
|--..--+++.+.|... ++++|+++++|.+|+ + ++|.+.+.++.....+|+||+|.-+.+.|+
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~---~-~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ---G-GTLRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe---C-CcEEEEECCCceEEecCEEEEcCCCccccc
Confidence 33345566777766653 579999999999994 3 358887654322237999999965555554
No 51
>PRK07236 hypothetical protein; Provisional
Probab=84.15 E-value=2.4 Score=39.12 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=41.8
Q ss_pred CchHHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 77 GMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 77 Gm~~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+...+.+.|.+.++ .+|+++++|.+|+. .++++.+.+++|+.+ .+|.||.|+
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQ--DGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 45667777877664 56999999999987 677899998888764 799999994
No 52
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.92 E-value=1.7 Score=43.46 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=37.4
Q ss_pred hHHHHHHhcCC--CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l--~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..++++|.+.+ +++++++++|.+|+. .+++|.|.+++|... .+|.||+|
T Consensus 408 ~~l~~aL~~~a~~Gv~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~ad~VV~A 458 (662)
T PRK01747 408 AELCRALLALAGQQLTIHFGHEVARLER--EDDGWQLDFAGGTLA-SAPVVVLA 458 (662)
T ss_pred HHHHHHHHHhcccCcEEEeCCEeeEEEE--eCCEEEEEECCCcEE-ECCEEEEC
Confidence 35666665543 488999999999987 667899988777543 68999999
No 53
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.82 E-value=2.5 Score=39.17 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.+.+ .+++++++++|.+++. .+++|.+.+.+|+.+ .+|.||.|+
T Consensus 117 ~L~~~~~~-~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vVgAd 164 (405)
T PRK05714 117 ALLERLHD-SDIGLLANARLEQMRR--SGDDWLLTLADGRQL-RAPLVVAAD 164 (405)
T ss_pred HHHHHHhc-CCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 34444443 4688999999999987 677899988888654 799999995
No 54
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=82.94 E-value=2.7 Score=38.95 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=36.1
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..+++.|.+ ..+++++++++|.+++. .+++|.+.+++|+ + .+|.||+|
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g~-i-~ad~vV~A 199 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDE--HANGVVVRTTQGE-Y-EARTLINC 199 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEe--cCCeEEEEECCCE-E-EeCEEEEC
Confidence 445555543 35788999999999986 6667888877773 3 79999999
No 55
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=82.63 E-value=3.2 Score=38.26 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.+.+..+++++++++|.++.. .+++|.+.+++|+.+ .+|.||.|+
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQR--DDDGWELTLADGEEI-QAKLVIGAD 165 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEE--cCCeEEEEECCCCEE-EeCEEEEeC
Confidence 3444444333678999999999986 667899988888654 789999994
No 56
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=82.09 E-value=3 Score=37.26 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=34.4
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCCe-EEEccCCCccccccEEEec
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w-~l~~~~G~~~~~~d~VVla 130 (282)
..++..|++ ..|++++.+++|..|.. .+++| .|.+++| .+ .+|.||+|
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~-~a~~vV~a 188 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI--RGEKVTAIVTPSG-DV-QADQVVLA 188 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe--eCCEEEEEEcCCC-EE-ECCEEEEc
Confidence 445555543 34689999999999997 55655 4666666 33 79999999
No 57
>PRK06847 hypothetical protein; Provisional
Probab=81.92 E-value=2.9 Score=38.17 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+++++++++|.+++. .++++.+.+.+|+.+ .+|.||.|+
T Consensus 120 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vI~Ad 159 (375)
T PRK06847 120 AGADVRLGTTVTAIEQ--DDDGVTVTFSDGTTG-RYDLVVGAD 159 (375)
T ss_pred hCCEEEeCCEEEEEEE--cCCEEEEEEcCCCEE-EcCEEEECc
Confidence 4678999999999986 667788888888654 799999993
No 58
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=81.83 E-value=2.7 Score=39.89 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=34.2
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..|.+++. ..|++|+.+++|.+|+. ++.|.|.+++|.. .+|+||+|
T Consensus 187 ~~L~~~a~-~~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~v--~A~~VV~A 232 (460)
T TIGR03329 187 RGLRRVAL-ELGVEIHENTPMTGLEE---GQPAVVRTPDGQV--TADKVVLA 232 (460)
T ss_pred HHHHHHHH-HcCCEEECCCeEEEEee---CCceEEEeCCcEE--ECCEEEEc
Confidence 34443333 46789999999999984 4568888877753 79999999
No 59
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=81.43 E-value=3 Score=40.23 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.3
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
++|+++++|..|++ ..++.|.|.+++|.. .+|.||++
T Consensus 232 v~i~~~t~V~~I~~-~~~~~~~V~T~~G~i--~A~~VVva 268 (497)
T PTZ00383 232 ISINLNTEVLNIER-SNDSLYKIHTNRGEI--RARFVVVS 268 (497)
T ss_pred EEEEeCCEEEEEEe-cCCCeEEEEECCCEE--EeCEEEEC
Confidence 57899999999997 235679998887843 79999999
No 60
>PRK07588 hypothetical protein; Provisional
Probab=81.11 E-value=3.1 Score=38.36 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=33.1
Q ss_pred CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+++|+++++|.+|+. .+++|.+.+++|+.. .+|.||.|+
T Consensus 116 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~d~vIgAD 154 (391)
T PRK07588 116 QVETIFDDSIATIDE--HRDGVRVTFERGTPR-DFDLVIGAD 154 (391)
T ss_pred CeEEEeCCEEeEEEE--CCCeEEEEECCCCEE-EeCEEEECC
Confidence 478999999999987 677899998888754 789999984
No 61
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=81.10 E-value=3.4 Score=38.08 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
|.+++.+..+++++++++|.+++. +++++.++.++|..+ .+|.||.|+
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~~~lvIgAD 163 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEF--SAEGNRVTLESGAEI-EAKWVIGAD 163 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 334444434578999999999987 677888988888654 789999994
No 62
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=80.77 E-value=4 Score=37.70 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+++++++++|.+++. .+++|.+..++|+.+ .+|.||.|+
T Consensus 124 ~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vI~Ad 163 (403)
T PRK07333 124 LGIDLREATSVTDFET--RDEGVTVTLSDGSVL-EARLLVAAD 163 (403)
T ss_pred CCCEEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEcC
Confidence 4688999999999987 677898888788654 789999994
No 63
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=80.58 E-value=3.3 Score=37.82 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
.+++++.+++|.+|.. .+++|.|.+++|. + .+|.||+|
T Consensus 162 ~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~-~-~a~~vV~A 199 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--DGDGVTVTTADGT-Y-EAKKLVVS 199 (376)
T ss_pred CCCEEECCCEEEEEEe--eCCeEEEEeCCCE-E-EeeEEEEe
Confidence 5788999999999997 6668999887774 3 79999999
No 64
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=80.26 E-value=4.7 Score=37.10 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=34.1
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+..+++++++++|.++.. .++++.+.+.+|+.+ .+|.||++.
T Consensus 194 ~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vI~a~ 235 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEK--TDSGIRATLDSGRSI-EVDAVIAAA 235 (377)
T ss_pred HhCCCEEEECCeEEEEEc--cCCEEEEEEcCCcEE-ECCEEEECc
Confidence 346789999999999986 566788888888654 799999993
No 65
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.72 E-value=3 Score=29.12 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=26.4
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG 118 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G 118 (282)
....+...+..++++++++.|.+|.. ++++++|.++||
T Consensus 43 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~~~V~~~~g 80 (80)
T PF00070_consen 43 AKILEEYLRKRGVEVHTNTKVKEIEK--DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHTTEEEEESEEEEEEEE--ETTSEEEEEETS
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEEecC
Confidence 33333333346899999999999997 555566777665
No 66
>PRK06753 hypothetical protein; Provisional
Probab=79.35 E-value=5 Score=36.64 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=38.9
Q ss_pred hHHHHHHhcCC-CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 79 NSICKALCHQP-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~~l-~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..|-+.|.+.+ ..+|+++++|.+|+. +++++.+++++|+.. .+|.||-|+
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~~~vigad 148 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIHFADGESE-AFDLCIGAD 148 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEEECCCCEE-ecCEEEECC
Confidence 45666666654 356999999999986 677899988888654 789999994
No 67
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=78.92 E-value=4.9 Score=37.06 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+++++++++|.+++. .+++|.++.++|+.+ .+|.||.|+
T Consensus 126 ~gv~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vV~Ad 165 (392)
T PRK08773 126 AGVQLHCPARVVALEQ--DADRVRLRLDDGRRL-EAALAIAAD 165 (392)
T ss_pred CCCEEEcCCeEEEEEe--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 4688999999999987 677898888777654 789999993
No 68
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.85 E-value=4.3 Score=35.53 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..++++++ +.|.+|++ .++.|.+.+.+|..+ .||.||+|.
T Consensus 69 ~~gv~~~~-~~v~~v~~--~~~~~~v~~~~~~~~-~~d~liiAt 108 (300)
T TIGR01292 69 KFGAEIIY-EEVIKVDL--SDRPFKVKTGDGKEY-TAKAVIIAT 108 (300)
T ss_pred HcCCeEEE-EEEEEEEe--cCCeeEEEeCCCCEE-EeCEEEECC
Confidence 34678888 89999997 667899987777554 799999994
No 69
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=78.68 E-value=4.9 Score=36.66 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=36.9
Q ss_pred hHHHHHHhc---CCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 79 NSICKALCH---QPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~---~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+.+.|.+ ..+ ++++++++|.+|.. .+++|.+.+.+|+.+ .+|.||.|+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~~~~vi~ad 159 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPR--HSDHVELTLDDGQQL-RARLLVGAD 159 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEe--cCCeeEEEECCCCEE-EeeEEEEeC
Confidence 444444444 234 78999999999987 667888888888653 789999883
No 70
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=78.67 E-value=4 Score=37.32 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..+++++.+++|.+|+. .++.|.|.+++|+ + .+|.||+|
T Consensus 157 ~~g~~~~~~~~V~~i~~--~~~~~~v~~~~~~-i-~a~~vV~a 195 (380)
T TIGR01377 157 AHGATVRDGTKVVEIEP--TELLVTVKTTKGS-Y-QANKLVVT 195 (380)
T ss_pred HcCCEEECCCeEEEEEe--cCCeEEEEeCCCE-E-EeCEEEEe
Confidence 46788999999999987 6677888876663 3 68999999
No 71
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=78.66 E-value=3.9 Score=38.67 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=42.8
Q ss_pred ccEEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCC-CeEEEccCCCccccccEEEec
Q 023469 70 KKYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 70 ~~yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~-~w~l~~~~G~~~~~~d~VVla 130 (282)
.+=+|+..+--+++.|-+. +|.+++++|+|..|.. .++ .-.+...+|.++ .+|.||+|
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i-~~~~vvlA 225 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEI-EADYVVLA 225 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEE-ecCEEEEc
Confidence 3446777777777776664 5789999999999986 333 245566778665 79999999
No 72
>PRK08163 salicylate hydroxylase; Provisional
Probab=78.27 E-value=5.3 Score=36.78 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.+.+..++++++++.|.+++. .++++.+.+.+|+.+ .+|.||.|+
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~Ad 162 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQ--DGDGVTVFDQQGNRW-TGDALIGCD 162 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEec--CCCceEEEEcCCCEE-ecCEEEECC
Confidence 3444443322378999999999986 667888888888654 789999994
No 73
>PRK09897 hypothetical protein; Provisional
Probab=78.20 E-value=4.2 Score=39.60 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=30.6
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCC
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~ 132 (282)
++++.+++|..|+. .+++|.|.+.+|.....+|.||+|.-
T Consensus 124 V~v~~~~~V~~I~~--~~~g~~V~t~~gg~~i~aD~VVLAtG 163 (534)
T PRK09897 124 VAVYESCQVTDLQI--TNAGVMLATNQDLPSETFDLAVIATG 163 (534)
T ss_pred EEEEECCEEEEEEE--eCCEEEEEECCCCeEEEcCEEEECCC
Confidence 56788999999987 67789998755422237999999943
No 74
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=77.65 E-value=4.6 Score=38.37 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEcc---CCC-ccccccEEEec
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVAS 130 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~---~G~-~~~~~d~VVla 130 (282)
|.++|.+.-+.++++++.|+.|++ ..++.|.|... +|+ ....++.|++-
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r-~~dg~W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKR-NGDGRWEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEE-CCCCCEEEEEEecCCCCeEEEECCEEEEC
Confidence 444444444678999999999998 34556999753 232 22378999998
No 75
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=77.49 E-value=4.6 Score=36.78 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=32.5
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..|.+++.+..+++++.+++|.+|+. . .|.+++|+. .+|+||+|
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~i--~a~~VV~A 192 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGDV--HADQVFVC 192 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCcE--EeCEEEEC
Confidence 45666665444788999999999974 2 566667753 69999999
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=75.98 E-value=6 Score=36.71 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=33.0
Q ss_pred HHHHHHhc---CCCCeeEcceeEEEEEeecCCCCe-EEEccCCCccccccEEEec
Q 023469 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 80 ~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w-~l~~~~G~~~~~~d~VVla 130 (282)
.+++.|++ ..|++|+.+++|.+|+. .+++| .+.+++|+ + .+|.||+|
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~v~t~~~~-~-~a~~VV~a 252 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGGRITGVQTGGGV-I-TADAYVVA 252 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCEEEEEEeCCcE-E-eCCEEEEC
Confidence 44444443 35789999999999986 55565 46665553 3 68999999
No 77
>PRK08013 oxidoreductase; Provisional
Probab=75.49 E-value=7 Score=36.28 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
|.+.+.+..+++++++++|.+++. +++++.++..+|+.+ .+|.||-|+
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~a~lvVgAD 164 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAW--GENEAFLTLKDGSML-TARLVVGAD 164 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEe--cCCeEEEEEcCCCEE-EeeEEEEeC
Confidence 344444323578999999999986 667888888888654 789999994
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=75.00 E-value=6.4 Score=36.55 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=33.0
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCC-----CccccccEEEec
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG-----QSLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G-----~~~~~~d~VVla 130 (282)
.+|.+.+. ..|++++.+++|.+|+. .+++|.+...++ ..+ .+|.||+|
T Consensus 201 ~~l~~~a~-~~G~~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~~~i-~a~~vV~a 253 (410)
T PRK12409 201 TGLAAACA-RLGVQFRYGQEVTSIKT--DGGGVVLTVQPSAEHPSRTL-EFDGVVVC 253 (410)
T ss_pred HHHHHHHH-hCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCccceE-ecCEEEEC
Confidence 34444433 35789999999999986 566787654332 123 78999999
No 79
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=74.19 E-value=6.3 Score=36.75 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=38.8
Q ss_pred EEeCCCchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 72 YVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 72 yvg~~Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
|........+.+.|.+. .+++++++++|.+|.. .++.|.+.++ ++.+ .+|.||+|
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~~-~~~i-~ad~VIlA 155 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVETS-GGEY-EADKVILA 155 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEEC-CcEE-EcCEEEEC
Confidence 33333445666655543 4688999999999986 6667888774 4343 78999999
No 80
>PRK06834 hypothetical protein; Provisional
Probab=73.56 E-value=7.3 Score=37.41 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++|+++++|.+|+. +++++.+...+|+.+ .+|.||.|+
T Consensus 112 ~~gv~i~~~~~v~~v~~--~~~~v~v~~~~g~~i-~a~~vVgAD 152 (488)
T PRK06834 112 ELGVPIYRGREVTGFAQ--DDTGVDVELSDGRTL-RAQYLVGCD 152 (488)
T ss_pred hCCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 35788999999999997 677888887777543 799999994
No 81
>PRK07045 putative monooxygenase; Reviewed
Probab=72.84 E-value=8.8 Score=35.32 Aligned_cols=45 Identities=29% Similarity=0.334 Sum_probs=32.7
Q ss_pred HHhcCCCCeeEcceeEEEEEeecCCCC--eEEEccCCCccccccEEEecC
Q 023469 84 ALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 84 ~La~~l~~~v~~~~~V~~i~~~~~~~~--w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+.+..+++++++++|..|+. .+++ +.|+.++|+.. .+|.||.|+
T Consensus 115 ~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~-~~~~vIgAD 161 (388)
T PRK07045 115 KLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERV-APTVLVGAD 161 (388)
T ss_pred HHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEE-ECCEEEECC
Confidence 333334578999999999986 4443 57888788654 789999884
No 82
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=72.58 E-value=7.8 Score=37.36 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEcc---CCCc-cccccEEEec
Q 023469 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGL---DGQS-LGQFNGVVAS 130 (282)
Q Consensus 80 ~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~---~G~~-~~~~d~VVla 130 (282)
+|.+.+.+ .+ ++|+++++|.+|+. ..++.|.+... +|+. ...+|.||++
T Consensus 188 aL~~~a~~-~Ggv~i~~~teV~~I~~-~~dg~~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 188 QLVGYLQK-QGNFELQLGHEVRDIKR-NDDGSWTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred HHHHHHHh-CCCeEEEeCCEEEEEEE-CCCCCEEEEEEEcCCCceEEEEcCEEEEC
Confidence 34444432 34 68999999999986 23335987643 3531 1278999988
No 83
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=71.97 E-value=2.8 Score=28.58 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=18.4
Q ss_pred eecccCCCceec--CChhHHHHHHHH
Q 023469 14 MLFDHGAPFFTV--TNNDVLALVREW 37 (282)
Q Consensus 14 ~~~DhGAqyft~--~~~~f~~~v~~~ 37 (282)
..+|+|+.+|.. ..+.+.+++++|
T Consensus 43 ~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 43 YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 689999999988 457888887753
No 84
>PRK05868 hypothetical protein; Validated
Probab=71.30 E-value=11 Score=34.74 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHHHHHhcC--CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQ--PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~--l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.|.+. .+.+++++++|++++. +++++.|++++|+.. .+|.||-|+
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~dg~~~-~adlvIgAD 156 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQD--DGDSVRVTFERAAAR-EFDLVIGAD 156 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEe--cCCeEEEEECCCCeE-EeCEEEECC
Confidence 344444332 3578999999999986 677889988888664 799999985
No 85
>PRK06116 glutathione reductase; Validated
Probab=70.67 E-value=9.3 Score=36.09 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCCCeeEcceeEEEEEeecCCCC-eEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+|+. .+++ +.+.+.+|+.+ .+|.||++.
T Consensus 220 ~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~i-~~D~Vv~a~ 261 (450)
T PRK06116 220 KKGIRLHTNAVPKAVEK--NADGSLTLTLEDGETL-TVDCLIWAI 261 (450)
T ss_pred HCCcEEECCCEEEEEEE--cCCceEEEEEcCCcEE-EeCEEEEee
Confidence 35788999999999986 4444 77777777654 799999994
No 86
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.24 E-value=9.3 Score=36.93 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=33.6
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+|.+ .++.|.+...+|..+ .+|.||+|.
T Consensus 278 ~~gv~i~~~~~V~~I~~--~~~~~~V~~~~g~~i-~a~~vViAt 318 (517)
T PRK15317 278 EYDVDIMNLQRASKLEP--AAGLIEVELANGAVL-KAKTVILAT 318 (517)
T ss_pred HCCCEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EcCEEEECC
Confidence 35688999999999997 567899988777654 799999994
No 87
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=69.59 E-value=12 Score=36.05 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=33.5
Q ss_pred hHHHHHHhcC---CCCeeEcceeEEEEEeecCCCCeEEEc---cCCC-ccccccEEEec
Q 023469 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ-SLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~w~l~~---~~G~-~~~~~d~VVla 130 (282)
..++++|++. .|++++++++|.+|++ ..+++|.+.. .+|+ ....+|.||+|
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKR-QSDGSWTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-cCCCeEEEEEeeccCCceEEEECCEEEEC
Confidence 3445555433 4789999999999986 2334688753 2342 11278999998
No 88
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=69.41 E-value=9.5 Score=36.32 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=34.3
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
+..+++++++++|.+++. .++++.+...+|+.+ .+|.||++.-..|.
T Consensus 229 ~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~g~~l-~~D~vl~a~G~~pn 275 (466)
T PRK07845 229 ARRGMTVLKRSRAESVER--TGDGVVVTLTDGRTV-EGSHALMAVGSVPN 275 (466)
T ss_pred HHCCcEEEcCCEEEEEEE--eCCEEEEEECCCcEE-EecEEEEeecCCcC
Confidence 345789999999999986 455677776677654 79999998433333
No 89
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=69.22 E-value=7.9 Score=36.68 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=33.0
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEccCC---CccccccEEEecCCCCC
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASDKNVV 135 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G---~~~~~~d~VVla~~~~p 135 (282)
+..+++++++++|.+|+. .++++.+...+| +.+ .+|.||++.-..|
T Consensus 224 ~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~gg~~~~i-~~D~vi~a~G~~p 272 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQ--TDDGVTVTLEDGGKEETL-EADYVLVAVGRRP 272 (462)
T ss_pred HHcCCEEEeCCEEEEEEE--eCCEEEEEEEeCCeeEEE-EeCEEEEeeCCcc
Confidence 346789999999999986 555677765554 333 7999999943334
No 90
>PLN02507 glutathione reductase
Probab=68.69 E-value=10 Score=36.61 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=32.7
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+..++++++++.|.+++. .+++..+...+|+.+ .+|.||++.
T Consensus 255 ~~~GI~i~~~~~V~~i~~--~~~~~~v~~~~g~~i-~~D~vl~a~ 296 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTK--TEGGIKVITDHGEEF-VADVVLFAT 296 (499)
T ss_pred HhCCCEEEeCCEEEEEEE--eCCeEEEEECCCcEE-EcCEEEEee
Confidence 345789999999999986 455677777677654 799999994
No 91
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=68.31 E-value=12 Score=34.64 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=30.0
Q ss_pred CCeeEcceeEEEEEeecCCCCeEEEccC-CC-ccccccEEEecC
Q 023469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLD-GQ-SLGQFNGVVASD 131 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~w~l~~~~-G~-~~~~~d~VVla~ 131 (282)
+++++++++|.+|+. +++++.++..+ ++ ....+|.||.|+
T Consensus 136 ~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 136 NITWLCPAEVVSVEY--QQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred CcEEEcCCeeEEEEe--cCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 578999999999986 66778887653 22 223789999994
No 92
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=68.28 E-value=11 Score=36.38 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+++++++++|.+|.. .++.|.+...+|+.+ .||.||+|.
T Consensus 280 ~gv~i~~~~~V~~I~~--~~~~~~v~~~~g~~i-~~d~lIlAt 319 (515)
T TIGR03140 280 YPIDLMENQRAKKIET--EDGLIVVTLESGEVL-KAKSVIVAT 319 (515)
T ss_pred hCCeEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 4688999999999986 566788888777654 799999994
No 93
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=68.03 E-value=13 Score=34.05 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+++.+ .+ ++++ ++.|.++.. .++++.+.+.+|+.+ .+|.||.|+
T Consensus 116 ~L~~~~~~-~~~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~ad 163 (388)
T PRK07608 116 ALWAALRF-QPNLTWF-PARAQGLEV--DPDAATLTLADGQVL-RADLVVGAD 163 (388)
T ss_pred HHHHHHHh-CCCcEEE-cceeEEEEe--cCCeEEEEECCCCEE-EeeEEEEeC
Confidence 34445443 34 6777 999999986 667899988888543 799999993
No 94
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=67.54 E-value=13 Score=34.06 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=30.4
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
++++++++|.+|.. .++++.+..++| .+ .+|.||.|+
T Consensus 120 v~~~~~~~v~~i~~--~~~~v~v~~~~~-~~-~adlvIgAD 156 (374)
T PRK06617 120 ITLIDNNQYQEVIS--HNDYSIIKFDDK-QI-KCNLLIICD 156 (374)
T ss_pred cEEECCCeEEEEEE--cCCeEEEEEcCC-EE-eeCEEEEeC
Confidence 67899999999986 667888888766 43 789999995
No 95
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=67.10 E-value=14 Score=34.92 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=32.9
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeE-EEccCCC-ccccccEEEec
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQ-SLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~-l~~~~G~-~~~~~d~VVla 130 (282)
.+|.+++. ++|+++..+++|.++.. .++++. +.+.+|. ....+|+||||
T Consensus 267 ~aL~~~~~-~~Gg~il~g~~V~~i~~--~~~~v~~V~t~~g~~~~l~AD~vVLA 317 (419)
T TIGR03378 267 EALKHRFE-QLGGVMLPGDRVLRAEF--EGNRVTRIHTRNHRDIPLRADHFVLA 317 (419)
T ss_pred HHHHHHHH-HCCCEEEECcEEEEEEe--eCCeEEEEEecCCccceEECCEEEEc
Confidence 34445544 46788999999999986 555554 4445541 12379999999
No 96
>PRK07190 hypothetical protein; Provisional
Probab=66.97 E-value=12 Score=35.99 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.++++|+++++|.+|+. +++++.+...+|+.+ .++.||.|+
T Consensus 121 ~~Gv~v~~~~~v~~l~~--~~~~v~v~~~~g~~v-~a~~vVgAD 161 (487)
T PRK07190 121 EAGAAVKRNTSVVNIEL--NQAGCLTTLSNGERI-QSRYVIGAD 161 (487)
T ss_pred HCCCEEEeCCEEEEEEE--cCCeeEEEECCCcEE-EeCEEEECC
Confidence 35789999999999987 667787777777643 789999994
No 97
>PRK06475 salicylate hydroxylase; Provisional
Probab=66.86 E-value=15 Score=34.07 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEcc--CCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (282)
|.+++.+..+++++++++|.+++. .++++.+++. +++....+|.||-|+
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcEEecCEEEECC
Confidence 333443333578999999999986 6677887653 232223789999984
No 98
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=66.50 E-value=13 Score=37.32 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=39.5
Q ss_pred hHHHHHHhcCCCC-eeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 79 NSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~~l~~-~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..|.+.|++.++. .++++++|.+|+. .++++.+.+.+|+.+ .+|.||.|+
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~~~dG~ti-~aDlVVGAD 244 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFED--SGDKVTVVLENGQRY-EGDLLVGAD 244 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEEECCCCEE-EcCEEEECC
Confidence 4577788777764 3789999999986 677888988888654 789999994
No 99
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=65.26 E-value=13 Score=35.19 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
+.++++++++.|.+++. .++++.+...+|+.+ .+|.||++.-..|.
T Consensus 228 ~~gI~v~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~ 273 (461)
T PRK05249 228 DSGVTIRHNEEVEKVEG--GDDGVIVHLKSGKKI-KADCLLYANGRTGN 273 (461)
T ss_pred HcCCEEEECCEEEEEEE--eCCeEEEEECCCCEE-EeCEEEEeecCCcc
Confidence 35788999999999986 556787777677654 79999999433343
No 100
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=65.14 E-value=14 Score=34.95 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+++. .+++..+...+|+.+ .+|.||+|.
T Consensus 219 ~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~viva~ 259 (446)
T TIGR01424 219 GRGIRIHPQTSLTSITK--TDDGLKVTLSHGEEI-VADVVLFAT 259 (446)
T ss_pred HCCCEEEeCCEEEEEEE--cCCeEEEEEcCCcEe-ecCEEEEee
Confidence 35789999999999986 455677776667654 799999994
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=64.69 E-value=13 Score=32.15 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=34.3
Q ss_pred CCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 75 ~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
...+.......++..+++++++++|.++.. .++++.+...++.....+|.||.|
T Consensus 90 r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 90 RDAFDEQLAERAQEAGAELRLGTTVLDVEI--HDDRVVVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--eCCEEEEEEcCccEEEEeCEEEEC
Confidence 333433333333346788999999999986 556666654433222378999999
No 102
>PRK06184 hypothetical protein; Provisional
Probab=64.57 E-value=15 Score=35.25 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEc---cCCCccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~---~~G~~~~~~d~VVla~ 131 (282)
.|.+++.+ .+++|+++++|.+|+. +++++.+.. ++++. ..+|.||.|+
T Consensus 114 ~L~~~l~~-~gv~i~~~~~v~~i~~--~~~~v~v~~~~~~~~~~-i~a~~vVgAD 164 (502)
T PRK06184 114 ILRERLAE-LGHRVEFGCELVGFEQ--DADGVTARVAGPAGEET-VRARYLVGAD 164 (502)
T ss_pred HHHHHHHH-CCCEEEeCcEEEEEEE--cCCcEEEEEEeCCCeEE-EEeCEEEECC
Confidence 34445543 4788999999999986 667777765 34444 3789999994
No 103
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=63.41 E-value=13 Score=35.09 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=32.8
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCC-ccccccEEEecCCCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASDKNVV 135 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~-~~~~~d~VVla~~~~p 135 (282)
..+++++++++|.+|+. .++++.+...+|+ ....+|.||++.-..|
T Consensus 223 ~~gi~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 223 KKGVKILTNTKVTAVEK--NDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HcCCEEEeCCEEEEEEE--eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 35688999999999986 5566777666663 1237999999943333
No 104
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=62.86 E-value=8 Score=35.35 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCC--CCeEEEcc--CC--CccccccEEEecC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGL--DG--QSLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~--~~w~l~~~--~G--~~~~~~d~VVla~ 131 (282)
+.=++..+++++..++++++|.+|++...+ ..|+|.+. +| +.+ .++.||++.
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~-~ar~vVla~ 155 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETY-RARNVVLAT 155 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEE-EESEEEE--
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEE-EeCeEEECc
Confidence 444566777777569999999999983222 24999873 23 333 789999983
No 105
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=62.40 E-value=16 Score=35.44 Aligned_cols=49 Identities=29% Similarity=0.307 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEcc--CCC-ccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~-~~~~~d~VVla~ 131 (282)
|.+.+.+..+++|+++++|.+|+. +++++.++.. +|+ ....+|.||.|+
T Consensus 119 L~~~~~~~~gv~v~~g~~v~~i~~--~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQ--DDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred HHHHHHhCCCcEEEcCCEEEEEEE--cCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 344444434688999999999997 6778887765 463 223789999994
No 106
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=62.18 E-value=16 Score=34.35 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~p 135 (282)
..++++++++.|.+|+. .++++.+..++|+ + .+|.||++.-..|
T Consensus 211 ~~gV~v~~~~~v~~i~~--~~~~v~v~~~~g~-i-~~D~vl~a~G~~p 254 (441)
T PRK08010 211 DQGVDIILNAHVERISH--HENQVQVHSEHAQ-L-AVDALLIASGRQP 254 (441)
T ss_pred hCCCEEEeCCEEEEEEE--cCCEEEEEEcCCe-E-EeCEEEEeecCCc
Confidence 45789999999999986 5556777665564 3 7999999943333
No 107
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=62.04 E-value=16 Score=34.40 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=34.1
Q ss_pred CchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 77 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 77 Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
-+..+....++..|++++.+++|.++.. .++.+.....+|+.+ .+|.||+|+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~g~v~~v~~~g~~i-~A~~VI~A~ 160 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQ--RDGKVVGVEADGDVI-EAKTVILAD 160 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEE--eCCEEEEEEcCCcEE-ECCEEEEEe
Confidence 3444333344456889999999999986 445554333455444 789999994
No 108
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=61.72 E-value=21 Score=33.04 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=31.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+++. ++.+.+...+|+.+ .+|.||++.
T Consensus 198 ~~GV~i~~~~~V~~i~~---~~~~~v~l~~g~~i-~aD~Vv~a~ 237 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD---GEKVELTLQSGETL-QADVVIYGI 237 (396)
T ss_pred HCCCEEEeCCeeEEEEc---CCEEEEEECCCCEE-ECCEEEECC
Confidence 45789999999999973 34566777778654 799999984
No 109
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=60.35 E-value=1.5e+02 Score=27.79 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=35.9
Q ss_pred HHHHHHhcCC--CCeeEcceeEEEEEee-----cCCCCeEEEccCCCccccccEEEecC
Q 023469 80 SICKALCHQP--GVESKFGVGVGRFEWL-----EDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l--~~~v~~~~~V~~i~~~-----~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.|.+.+.+.. +++++++++|.+++.. .+++++.++..+|+.+ .+|.||.|+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i-~a~llVgAD 179 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVL-YTKLLIGAD 179 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEE-EeeEEEEec
Confidence 3455555433 3789999999999741 1245688888888764 789999994
No 110
>PRK06996 hypothetical protein; Provisional
Probab=59.60 E-value=21 Score=33.06 Aligned_cols=48 Identities=8% Similarity=-0.124 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCC--CccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--QSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G--~~~~~~d~VVla~ 131 (282)
|.+.+.+ .+++++++++|.+++. .+++|++...+| +....+|.||-|+
T Consensus 121 L~~~~~~-~g~~~~~~~~v~~~~~--~~~~v~v~~~~~~g~~~i~a~lvIgAD 170 (398)
T PRK06996 121 LARAVRG-TPVRWLTSTTAHAPAQ--DADGVTLALGTPQGARTLRARIAVQAE 170 (398)
T ss_pred HHHHHHh-CCCEEEcCCeeeeeee--cCCeEEEEECCCCcceEEeeeEEEECC
Confidence 3444433 4678999999999986 777899987654 2223789999994
No 111
>PRK14727 putative mercuric reductase; Provisional
Probab=58.72 E-value=20 Score=34.25 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+++. .++++.+...+|+ + .+|.||++.
T Consensus 240 ~~GV~i~~~~~V~~i~~--~~~~~~v~~~~g~-i-~aD~VlvA~ 279 (479)
T PRK14727 240 KEGIEVLNNTQASLVEH--DDNGFVLTTGHGE-L-RAEKLLIST 279 (479)
T ss_pred hCCCEEEcCcEEEEEEE--eCCEEEEEEcCCe-E-EeCEEEEcc
Confidence 45788999999999986 5566777766664 3 799999994
No 112
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=58.48 E-value=15 Score=34.93 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=31.4
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccCCCcc-ccccEEEecC
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSL-GQFNGVVASD 131 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~-~~~d~VVla~ 131 (282)
.+|+++++|..+.+..+++.|.|++++|... ..+|.||+|.
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~AT 140 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVAT 140 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEee
Confidence 4688889988888744556899999887542 2499999993
No 113
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=58.14 E-value=1.5e+02 Score=27.19 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=37.9
Q ss_pred chHHHHHHhcCC----CCeeEcceeEEEEEeecCCCCeEEEcc-CCCccccccEEEecC
Q 023469 78 MNSICKALCHQP----GVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSLGQFNGVVASD 131 (282)
Q Consensus 78 m~~l~~~La~~l----~~~v~~~~~V~~i~~~~~~~~w~l~~~-~G~~~~~~d~VVla~ 131 (282)
...|-+.|.+.+ ++++++++.|+.++. +++.+.++.+ +|+.+ .+|.||-|+
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~~~~v~v~l~~dG~~~-~a~llVgAD 158 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQ--DGDGVTVTLSFDGETL-DADLLVGAD 158 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--cCCceEEEEcCCCcEE-ecCEEEECC
Confidence 344544444432 378999999999997 6677888877 88754 899999994
No 114
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=58.13 E-value=23 Score=36.33 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=39.9
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhh
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR 140 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~ 140 (282)
..+.+...+..++++++++.|.+|.. .+..-.+.+.+|+.+ .+|.||++.-..|...++
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i-~~D~Vi~a~G~~Pn~~la 243 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSL-EADLIVMAAGIRPNDELA 243 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEE-EcCEEEECCCCCcCcHHH
Confidence 33444444457899999999999974 443445666788764 799999995444544443
No 115
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=57.85 E-value=20 Score=33.49 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccC-CCcccc--ccEEEecC
Q 023469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQ--FNGVVASD 131 (282)
Q Consensus 83 ~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~-G~~~~~--~d~VVla~ 131 (282)
+.+.+..++++++++.|.+|.+ .++.+.+...+ ++.+ . ||+||+|.
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~-~~~yd~lIiAT 99 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVND--ERQTVVVRNNKTNETY-EESYDYLILSP 99 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEEC--CCCEEEEEECCCCCEE-ecCCCEEEECC
Confidence 3454456778889999999986 55566665432 3333 4 99999994
No 116
>PRK14694 putative mercuric reductase; Provisional
Probab=56.99 E-value=22 Score=33.75 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~ 137 (282)
..++++++++.|.+|+. +++.+.+.++++ .+ .+|.||++.-..|..
T Consensus 230 ~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i-~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 230 REGIEVLKQTQASEVDY--NGREFILETNAG-TL-RAEQLLVATGRTPNT 275 (468)
T ss_pred hCCCEEEeCCEEEEEEE--cCCEEEEEECCC-EE-EeCEEEEccCCCCCc
Confidence 45788999999999986 555566665555 33 799999984333433
No 117
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=56.47 E-value=31 Score=32.32 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCchHHHHHHhc---CCCCeeEcceeEEEEEeecCC-CCeEE--EccCCCccccccEEEecCCC
Q 023469 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDK-NLWSV--SGLDGQSLGQFNGVVASDKN 133 (282)
Q Consensus 76 ~Gm~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~-~~w~l--~~~~G~~~~~~d~VVla~~~ 133 (282)
++...+.+.|.+ ..+++|+++++|.+|.. ++ +++.+ ...++.....++.||+|.-+
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 455667777643 45789999999999986 42 34443 22222222368999999443
No 118
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=53.59 E-value=20 Score=36.69 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+|++ . ...|.+.+|..+ .||.||+|.
T Consensus 66 ~~gv~~~~g~~V~~Id~--~--~k~V~~~~g~~~-~yD~LVlAT 104 (785)
T TIGR02374 66 KHGITLYTGETVIQIDT--D--QKQVITDAGRTL-SYDKLILAT 104 (785)
T ss_pred HCCCEEEcCCeEEEEEC--C--CCEEEECCCcEe-eCCEEEECC
Confidence 45788999999999986 3 345666777654 799999994
No 119
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=52.55 E-value=20 Score=32.76 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=27.6
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccC---CC-ccccccEEEec
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 130 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~---G~-~~~~~d~VVla 130 (282)
.+++.++.|.+++. ..+++|+|.+.+ |+ ....+|.||+|
T Consensus 294 ~~l~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQ-DGDGGVRLTLRHRQTGEEETLEVDAVILA 336 (341)
T ss_dssp SEEETTEEEEEEEE-ES-SSEEEEEEETTT--EEEEEESEEEE-
T ss_pred eEEeCCCEEEEEEE-CCCCEEEEEEEECCCCCeEEEecCEEEEc
Confidence 67899999999998 233589998764 22 22379999999
No 120
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=51.84 E-value=30 Score=32.62 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=32.5
Q ss_pred HHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccC-CCc-cccccEEEecC
Q 023469 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQS-LGQFNGVVASD 131 (282)
Q Consensus 83 ~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~-G~~-~~~~d~VVla~ 131 (282)
+.+.+..+++++++++|.+|.. .++...+...+ ++. ...||+||+|.
T Consensus 65 ~~~~~~~~i~v~~~~~V~~Id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 65 EKFYDRKQITVKTYHEVIAIND--ERQTVTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred HHHHHhCCCEEEeCCEEEEEEC--CCCEEEEEECCCCcEEeeecCEEEECC
Confidence 3444445778999999999997 66667666533 222 13789999994
No 121
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=51.58 E-value=26 Score=31.86 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=32.8
Q ss_pred chHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 78 m~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
+....+...+..+++++++++|.++.. . .+.+.+|+.+ .+|.||++
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i-~~D~vi~a 238 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTL-PADAILWA 238 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEE-ecCEEEEc
Confidence 344444445567899999999998863 2 3555677654 79999999
No 122
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=51.08 E-value=39 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=29.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCC-eEEEccCCCccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVla 130 (282)
..|++++.+++|.+|+. .++++ +.+.+++|.. .++.||++
T Consensus 195 ~~Gv~~~~~~~V~~i~~-~~~~~~~~v~t~~g~i--~a~~vVva 235 (407)
T TIGR01373 195 RRGVDIIQNCEVTGFIR-RDGGRVIGVETTRGFI--GAKKVGVA 235 (407)
T ss_pred HCCCEEEeCCEEEEEEE-cCCCcEEEEEeCCceE--ECCEEEEC
Confidence 35789999999999975 23344 4577777743 68988888
No 123
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=50.95 E-value=36 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
++++++++.|.+++. .+++..+...+|+.+ .+|.||++.-..|.
T Consensus 223 gI~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~G~~pn 266 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ--DGDGVTLTLDDGSTV-TADVLLVATGRVPN 266 (452)
T ss_pred CCEEEeCCEEEEEEE--cCCeEEEEEcCCCEE-EcCEEEEeeccCcC
Confidence 578999999999986 555677776667554 79999999433343
No 124
>PRK06185 hypothetical protein; Provisional
Probab=50.34 E-value=37 Score=31.31 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCe---EEEccCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w---~l~~~~G~~~~~~d~VVla~ 131 (282)
|.+++.+..+++++++++|.++.. .++++ .+..++|+....+|.||.|+
T Consensus 114 L~~~~~~~~~v~i~~~~~v~~~~~--~~~~v~~v~~~~~~g~~~i~a~~vI~Ad 165 (407)
T PRK06185 114 LAEEASAYPNFTLRMGAEVTGLIE--EGGRVTGVRARTPDGPGEIRADLVVGAD 165 (407)
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEcCCCcEEEEeCEEEECC
Confidence 334443333678999999999986 44443 34444564223799999994
No 125
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=50.33 E-value=31 Score=32.40 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=30.5
Q ss_pred hcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 86 a~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+..+++++++++|.+|+. .++...+.. +|+.+ .+|.||+|.
T Consensus 208 l~~~GI~i~~~~~V~~i~~--~~~~v~v~~-~g~~i-~~D~viva~ 249 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKN--DGDQVLVVT-EDETY-RFDALLYAT 249 (438)
T ss_pred HHHcCCEEEcCCEEEEEEe--cCCEEEEEE-CCeEE-EcCEEEEee
Confidence 3345789999999999986 555565554 45443 799999984
No 126
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=49.90 E-value=37 Score=32.97 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEc--cCCCccccccEEEecC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~--~~G~~~~~~d~VVla~ 131 (282)
|.+++.+..+++|+++++|.+++. ++++|.+.. .+|+....+|.||.|+
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQ--HDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEE--cCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 455555433578999999999987 666777654 3453223789999994
No 127
>PRK07846 mycothione reductase; Reviewed
Probab=49.85 E-value=37 Score=32.20 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
+++++++++|.+++. .+++..+.+.+|+.+ .+|.||++.-..|.
T Consensus 220 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~G~~pn 263 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ--DGSGVTLRLDDGSTV-EADVLLVATGRVPN 263 (451)
T ss_pred CeEEEeCCEEEEEEE--cCCEEEEEECCCcEe-ecCEEEEEECCccC
Confidence 578999999999986 555666776677654 79999999433343
No 128
>PRK13748 putative mercuric reductase; Provisional
Probab=49.35 E-value=34 Score=33.30 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=32.3
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
..+++++++++|.+|+. .++.+.+..++|+ + .+|.||+|.-..|.
T Consensus 322 ~~gI~i~~~~~v~~i~~--~~~~~~v~~~~~~-i-~~D~vi~a~G~~pn 366 (561)
T PRK13748 322 AEGIEVLEHTQASQVAH--VDGEFVLTTGHGE-L-RADKLLVATGRAPN 366 (561)
T ss_pred HCCCEEEcCCEEEEEEe--cCCEEEEEecCCe-E-EeCEEEEccCCCcC
Confidence 35788999999999986 5556767665553 3 79999999433343
No 129
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=49.14 E-value=33 Score=32.50 Aligned_cols=45 Identities=16% Similarity=-0.008 Sum_probs=30.4
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCC-ccccccEEEecCCCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASDKNVV 135 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~-~~~~~d~VVla~~~~p 135 (282)
..+++++++++|.+++. .+....+.. +|+ ....+|.||+|.-..|
T Consensus 223 ~~GI~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 223 NDGVKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HCCCEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCcc
Confidence 45789999999999986 444555543 342 1237999999953333
No 130
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=49.01 E-value=40 Score=32.17 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCc-cccccEEEec
Q 023469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS-LGQFNGVVAS 130 (282)
Q Consensus 82 ~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~-~~~~d~VVla 130 (282)
.+.|.+ -+++++++++|.+++. .+++..+..++|+. ...+|.|++|
T Consensus 221 ~~~l~~-~gv~i~~~~~v~~~~~--~~~~v~v~~~~g~~~~~~ad~vLvA 267 (454)
T COG1249 221 TKQLEK-GGVKILLNTKVTAVEK--KDDGVLVTLEDGEGGTIEADAVLVA 267 (454)
T ss_pred HHHHHh-CCeEEEccceEEEEEe--cCCeEEEEEecCCCCEEEeeEEEEc
Confidence 344444 4678999999999986 55556777766642 2369999999
No 131
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=48.81 E-value=33 Score=31.19 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.4
Q ss_pred HhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 85 LCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 85 La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+.+..+++++.+ +|.+|+. .++ .|.+++|+.+ .||.||||.
T Consensus 63 ~~~~~gv~~~~~-~v~~id~--~~~--~V~~~~g~~~-~yD~LviAt 103 (364)
T TIGR03169 63 LARQAGARFVIA-EATGIDP--DRR--KVLLANRPPL-SYDVLSLDV 103 (364)
T ss_pred HHHhcCCEEEEE-EEEEEec--ccC--EEEECCCCcc-cccEEEEcc
Confidence 344456777665 7999986 444 4556677654 799999994
No 132
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=48.61 E-value=42 Score=31.46 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 82 ~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
.+...+..+++++++++|.+|.. +++.+.+..+++ .+ .+|.||++.-..|.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i-~~d~vi~a~G~~p~ 247 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EY-EADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EE-EcCEEEECcCCCcC
Confidence 33333456789999999999974 444455555444 33 79999998433343
No 133
>PRK08244 hypothetical protein; Provisional
Probab=48.47 E-value=33 Score=32.81 Aligned_cols=52 Identities=23% Similarity=0.096 Sum_probs=35.1
Q ss_pred chHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEcc--CCCccccccEEEecC
Q 023469 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (282)
Q Consensus 78 m~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (282)
+..+....++..+++++++++|.+++. .++++.+... +|+....+|.||.|+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQ--DGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEE--cCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 344444334446788999999999986 6667766543 453223789999994
No 134
>PTZ00052 thioredoxin reductase; Provisional
Probab=48.22 E-value=38 Score=32.65 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=33.1
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
..++++++++.|.+++. .++...+...+|+.+ .+|.||++.--.|.
T Consensus 234 ~~GV~i~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vl~a~G~~pn 279 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEK--MDDKIKVLFSDGTTE-LFDTVLYATGRKPD 279 (499)
T ss_pred HcCCEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EcCEEEEeeCCCCC
Confidence 35788999999999986 444566666677654 79999999544444
No 135
>PRK06175 L-aspartate oxidase; Provisional
Probab=47.90 E-value=38 Score=31.96 Aligned_cols=52 Identities=6% Similarity=-0.132 Sum_probs=31.6
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCC---eEEEccCCCc-cccccEEEecCCC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASDKN 133 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~-~~~~d~VVla~~~ 133 (282)
..|.+.+.+..+++|+++++|..|.. ++++ +.+.. +|+. ...++.||||.-+
T Consensus 132 ~~L~~~~~~~~gV~i~~~t~v~~Li~--~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 132 KILLKKVKKRKNITIIENCYLVDIIE--NDNTCIGAICLK-DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHhcCCCEEEECcEeeeeEe--cCCEEEEEEEEE-CCcEEEEEcCeEEEccCc
Confidence 34444444445789999999999875 3332 22222 3432 2368999999433
No 136
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=47.49 E-value=31 Score=31.61 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.8
Q ss_pred HHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 84 ~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+.+..+++++++++|.+|.+ .. ..+.+ +|+.+ .||+||+|.
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~--~~--~~v~~-~~~~~-~yd~LVlAT 107 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EA--QVVKS-QGNQW-QYDKLVLAT 107 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC--CC--CEEEE-CCeEE-eCCEEEECC
Confidence 445556788999999999986 33 35554 34443 799999994
No 137
>PRK10015 oxidoreductase; Provisional
Probab=47.47 E-value=37 Score=31.97 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=29.4
Q ss_pred hcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 86 a~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
++..+++++++++|..|.. .++++.....++..+ .+|.||+|+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~--~~~~v~~v~~~~~~i-~A~~VI~Ad 160 (429)
T PRK10015 118 AEQAGAQFIPGVRVDALVR--EGNKVTGVQAGDDIL-EANVVILAD 160 (429)
T ss_pred HHHcCCEEECCcEEEEEEE--eCCEEEEEEeCCeEE-ECCEEEEcc
Confidence 3346789999999999986 455665322233333 789999993
No 138
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=46.83 E-value=44 Score=31.20 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=30.1
Q ss_pred HHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 84 ~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
...+..++++++++.|.+|.. ++ .. +...+|+.+ .+|.||++.
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~--~~-~~-v~~~~g~~i-~~D~vi~a~ 229 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEG--EE-RV-KVFTSGGVY-QADMVILAT 229 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEec--CC-CE-EEEcCCCEE-EeCEEEECC
Confidence 333456789999999999985 33 33 334566554 799999994
No 139
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.82 E-value=39 Score=32.09 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEcc--CCC-ccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~-~~~~~d~VVla~~~~pa 136 (282)
..+++++++++|.+++. .++...+... +|+ ....+|.||++.-..|.
T Consensus 225 ~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 225 KLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 45789999999999986 5555655443 553 12379999999433343
No 140
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=46.77 E-value=43 Score=30.65 Aligned_cols=38 Identities=24% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
+++++ .++|..+.. ..++.|.+.+++|+.+ .+|.||.|
T Consensus 99 gv~~~-~~~v~~i~~-~~~~~~~v~~~~g~~~-~a~~VI~A 136 (388)
T TIGR01790 99 GVLWL-ERKAIHAEA-DGVALSTVYCAGGQRI-QARLVIDA 136 (388)
T ss_pred CcEEE-ccEEEEEEe-cCCceeEEEeCCCCEE-EeCEEEEC
Confidence 56664 567888876 2366799988887554 79999999
No 141
>PRK07538 hypothetical protein; Provisional
Probab=46.59 E-value=45 Score=30.94 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHhcCCC-CeeEcceeEEEEEeecCCCCeEEEccCC---C-ccccccEEEecC
Q 023469 81 ICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDG---Q-SLGQFNGVVASD 131 (282)
Q Consensus 81 l~~~La~~l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G---~-~~~~~d~VVla~ 131 (282)
|.+.+.+.++ .+|+++++|++++. .+++..+...++ + ....+|.||-|+
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~--~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQ--DADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEe--cCCceEEEEeccCCCccceEEeeEEEECC
Confidence 4444444445 46999999999986 555555544332 1 123689999884
No 142
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=46.58 E-value=54 Score=34.00 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=38.9
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchh
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~ 139 (282)
..+.+...+..++++++++.|.+|.....+..-.+.+.+|+.+ .+|.||++.-..|...+
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i-~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSEL-EVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEE-EcCEEEECCCcccCchH
Confidence 3344444446789999999999997410122345666788765 79999999544454443
No 143
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=46.54 E-value=38 Score=32.09 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=32.9
Q ss_pred HHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEcc--CCCccccccEEEecCCCCC
Q 023469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVV 135 (282)
Q Consensus 82 ~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~--~G~~~~~~d~VVla~~~~p 135 (282)
.+...+..+++++++++|.+++. +++...+... ++.....+|.||++.-..|
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSV--RGGGKIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 33333346789999999999986 4455555442 2222237999999943333
No 144
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=46.39 E-value=43 Score=31.70 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=32.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCC-eEEEccCCCccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
..+++++++++|.+++. .+++ ..+..++|+....+|.||++.--.|.
T Consensus 219 ~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 219 KEGINVHKLSKPVKVEK--TVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HcCCEEEcCCEEEEEEE--eCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 45789999999999986 3333 55666667322379999999433343
No 145
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.33 E-value=46 Score=31.17 Aligned_cols=38 Identities=24% Similarity=0.101 Sum_probs=28.8
Q ss_pred hcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 86 a~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
.+..+++++++++|.++.. + . +.+++|+.+ .+|.||++
T Consensus 238 L~~~gV~v~~~~~v~~v~~--~--~--v~~~~g~~i-~~d~vi~~ 275 (424)
T PTZ00318 238 LRRLGVDIRTKTAVKEVLD--K--E--VVLKDGEVI-PTGLVVWS 275 (424)
T ss_pred HHHCCCEEEeCCeEEEEeC--C--E--EEECCCCEE-EccEEEEc
Confidence 3457899999999999974 2 2 445677654 79999998
No 146
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=45.34 E-value=35 Score=32.92 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccC---CC-ccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~---G~-~~~~~d~VVla 130 (282)
..|.+++.+++|.+|.. .++.|.+...+ |+ ....++.||.|
T Consensus 167 ~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnA 211 (508)
T PRK12266 167 ERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNA 211 (508)
T ss_pred HcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 45788999999999986 56678876543 43 12378999999
No 147
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=44.78 E-value=35 Score=31.67 Aligned_cols=70 Identities=6% Similarity=0.106 Sum_probs=48.4
Q ss_pred CCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcchhhhhcCCCCCCCCCcc
Q 023469 75 VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFA 154 (282)
Q Consensus 75 ~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~~~~~ 154 (282)
+.|.++|.++|++..+++|++++.+..++. .++.|.+.. + . ..+.||.| .|.+..
T Consensus 194 ~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~--~~~~~~~~~--~-~--~~~~vi~T---g~id~~--------------- 248 (377)
T TIGR00031 194 KGGYTKLFEKMLDHPLIDVKLNCHINLLKD--KDSQLHFAN--K-A--IRKPVIYT---GLIDQL--------------- 248 (377)
T ss_pred cccHHHHHHHHHhcCCCEEEeCCccceeec--cccceeecc--c-c--ccCcEEEe---cCchHH---------------
Confidence 679999999999876788999998888875 445576542 2 2 12789999 444421
Q ss_pred hHHHHHhccCCCcceeE
Q 023469 155 PDLAVKLEEIPVNPCFA 171 (282)
Q Consensus 155 ~~~~~~l~~v~~~p~~~ 171 (282)
+.-...+++|.+.-.
T Consensus 249 --f~~~~g~L~yrsl~f 263 (377)
T TIGR00031 249 --FGYRFGALQYRSLKF 263 (377)
T ss_pred --HhhccCcccceeEEE
Confidence 223456778887655
No 148
>PRK06126 hypothetical protein; Provisional
Probab=44.51 E-value=44 Score=32.36 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=29.7
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEc---cCCC-ccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQ-SLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~---~~G~-~~~~~d~VVla~ 131 (282)
.+++|+++++|.+|+. +++++.+.. .+|+ ....+|.||.|+
T Consensus 140 ~~v~i~~~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~ad~vVgAD 184 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQ--DADGVTATVEDLDGGESLTIRADYLVGCD 184 (545)
T ss_pred CCceEEeccEEEEEEE--CCCeEEEEEEECCCCcEEEEEEEEEEecC
Confidence 3578999999999986 666676654 3353 123789999994
No 149
>PRK11445 putative oxidoreductase; Provisional
Probab=43.74 E-value=59 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=31.2
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEc-cCCCc-cccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~-~~G~~-~~~~d~VVla~ 131 (282)
.++++++++.|..++. .+++|.+.. ++|+. ...+|.||.|+
T Consensus 111 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~~g~~~~i~a~~vV~Ad 153 (351)
T PRK11445 111 ASVEVYHNSLCRKIWR--EDDGYHVIFRADGWEQHITARYLVGAD 153 (351)
T ss_pred cCCEEEcCCEEEEEEE--cCCEEEEEEecCCcEEEEEeCEEEECC
Confidence 3578999999999986 667898875 45641 23789999993
No 150
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=43.66 E-value=43 Score=31.90 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccC--CC-ccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQ-SLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~--G~-~~~~~d~VVla~ 131 (282)
.+++++++++|.+|+. .+++..+...+ |+ ....+|.||++.
T Consensus 237 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 237 QGLDIHLGVKIGEIKT--GGKGVSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred cCcEEEeCcEEEEEEE--cCCEEEEEEEeCCCceeEEEcCEEEEcc
Confidence 5788999999999986 55555555433 33 223799999984
No 151
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.14 E-value=28 Score=33.13 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=34.5
Q ss_pred hHHHHHHh---cCCC--CeeEcceeEEEEEeecCC-CCeEEEccCCC---ccccccEEEec
Q 023469 79 NSICKALC---HQPG--VESKFGVGVGRFEWLEDK-NLWSVSGLDGQ---SLGQFNGVVAS 130 (282)
Q Consensus 79 ~~l~~~La---~~l~--~~v~~~~~V~~i~~~~~~-~~w~l~~~~G~---~~~~~d~VVla 130 (282)
..+.++|- +..+ ..|++++.|..++. .. +.|++.+.++. ....||+||++
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 34555444 3333 46999999999987 55 68999875442 22369999998
No 152
>PLN02463 lycopene beta cyclase
Probab=43.07 E-value=56 Score=31.07 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=30.5
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+++++ .++|.+|+. .++++.|.+++|..+ .+|.||.|+
T Consensus 127 ~GV~~~-~~~V~~I~~--~~~~~~V~~~dG~~i-~A~lVI~Ad 165 (447)
T PLN02463 127 NGVQFH-QAKVKKVVH--EESKSLVVCDDGVKI-QASLVLDAT 165 (447)
T ss_pred cCCEEE-eeEEEEEEE--cCCeEEEEECCCCEE-EcCEEEECc
Confidence 456665 578999987 677788988888654 799999993
No 153
>PRK06370 mercuric reductase; Validated
Probab=43.05 E-value=49 Score=31.33 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=30.6
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEc--cCCCccccccEEEecCCCCC
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASDKNVV 135 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~--~~G~~~~~~d~VVla~~~~p 135 (282)
+..+++++++++|.+|+. .+++..+.. .+++....+|.||++.-..|
T Consensus 223 ~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 223 EREGIDVRLNAECIRVER--DGDGIAVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HhCCCEEEeCCEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence 346789999999999986 444544433 23322237999999943333
No 154
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=42.76 E-value=45 Score=31.25 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEcc-CCCcc-ccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSL-GQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~-~G~~~-~~~d~VVla~ 131 (282)
.++++++++.|.+|++ +++.+.+... +|+.+ ..||++|+|.
T Consensus 69 ~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lviAt 111 (444)
T PRK09564 69 SGIDVKTEHEVVKVDA--KNKTITVKNLKTGSIFNDTYDKLMIAT 111 (444)
T ss_pred CCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEEecCCEEEECC
Confidence 4678899999999987 6666776542 24332 1399999994
No 155
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=41.29 E-value=40 Score=31.20 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.++++++++.|.+|.. .. ..+..++|+.+ .||+||+|.
T Consensus 71 ~~i~~~~g~~V~~id~--~~--~~v~~~~g~~~-~yd~LViAT 108 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR--DT--RELVLTNGESW-HWDQLFIAT 108 (396)
T ss_pred CCCEEEcCCEEEEEEC--CC--CEEEECCCCEE-EcCEEEEcc
Confidence 4678999999999986 43 34445567654 799999994
No 156
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=40.67 E-value=54 Score=31.45 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=31.8
Q ss_pred cCCCCeeEcceeEEEEEeecCCCCeEEEccCCC--ccccccEEEecCCCCCcc
Q 023469 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSP 137 (282)
Q Consensus 87 ~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~--~~~~~d~VVla~~~~pa~ 137 (282)
+..++++++++.+.++.. .+++..+...+|+ ....+|.||++.--.|..
T Consensus 231 ~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQ--IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHcCCEEEeCceEEEEEE--cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 345789999999999986 4445555544442 123799999994434433
No 157
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=39.14 E-value=77 Score=29.12 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=30.9
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..+++++.|.+|+. .++.+.+.+++|..+ .++.||-|
T Consensus 101 ~~~~~~~~V~~i~~--~~~~~~v~~~~g~~i-~a~~VvDa 137 (374)
T PF05834_consen 101 GVIRLNARVTSIEE--TGDGVLVVLADGRTI-RARVVVDA 137 (374)
T ss_pred CeEEEccEEEEEEe--cCceEEEEECCCCEE-EeeEEEEC
Confidence 45889999999997 666788888888765 78999998
No 158
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=38.00 E-value=64 Score=29.29 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHhcC---CC-CeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 80 SICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 80 ~l~~~La~~---l~-~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
.+++.|++. ++ ..+..++.|..++. ....|.+.+.+|+. .+|+||+|
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~v~t~~g~i--~a~~vv~a 207 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLER--DGRVVGVETDGGTI--EADKVVLA 207 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEe--cCcEEEEEeCCccE--EeCEEEEc
Confidence 344444432 44 45777999999985 22569999888863 79999999
No 159
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=37.89 E-value=62 Score=30.31 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=32.3
Q ss_pred HHHHHHhc---CCCCeeEcceeEEEEEeecCC-C---CeEEEccCCCc-cccccEEEecCC
Q 023469 80 SICKALCH---QPGVESKFGVGVGRFEWLEDK-N---LWSVSGLDGQS-LGQFNGVVASDK 132 (282)
Q Consensus 80 ~l~~~La~---~l~~~v~~~~~V~~i~~~~~~-~---~w~l~~~~G~~-~~~~d~VVla~~ 132 (282)
.+.+.|.+ ..+++++++++|.+|.. ++ + ++.+...+|+. ...++.||+|.-
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATG 189 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence 34444433 35789999999999986 33 2 23444444432 236799999954
No 160
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=37.48 E-value=84 Score=30.22 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcch
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (282)
..++++++++.|.+|+. ..++.-.+.+.+|+.+ .+|.||++.--.|...
T Consensus 243 ~~GI~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i-~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 243 ANGINIMTNENPAKVTL-NADGSKHVTFESGKTL-DVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HcCCEEEcCCEEEEEEE-cCCceEEEEEcCCCEE-EcCEEEEeeCCCcCcc
Confidence 35789999999999986 1222345555566554 7999999854445443
No 161
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.39 E-value=45 Score=32.09 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCC--C-ccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--Q-SLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G--~-~~~~~d~VVla 130 (282)
..|.+++.+++|.+|.. +++.|.+...++ + ....++.||.|
T Consensus 167 ~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 167 ERGATILTRTRCVSARR--EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred HCCCEEecCcEEEEEEE--cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 45789999999999987 666788876554 2 11268999999
No 162
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=36.51 E-value=52 Score=30.92 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 76 ~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
+.++.-++...+++|++|++++.|++++. ++.. +.+|+....++.||-|
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~----~~v~--~~~g~~~I~~~tvvWa 257 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP----DGVT--LKDGEEEIPADTVVWA 257 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC----CcEE--EccCCeeEecCEEEEc
Confidence 34455566667778999999999999975 3444 3445422378999999
No 163
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.16 E-value=66 Score=30.56 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=28.9
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEcc---CCC-ccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~---~G~-~~~~~d~VVla~ 131 (282)
..+++++++++|.+++. .++++.+... +|+ ....+|.||++.
T Consensus 227 ~~gV~i~~~~~V~~i~~--~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 272 (466)
T PRK06115 227 KQGMKFKLGSKVTGATA--GADGVSLTLEPAAGGAAETLQADYVLVAI 272 (466)
T ss_pred hcCCEEEECcEEEEEEE--cCCeEEEEEEEcCCCceeEEEeCEEEEcc
Confidence 35789999999999986 4556655432 232 223799999994
No 164
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=35.22 E-value=31 Score=19.78 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCceecCChhHHHHHHHHHh
Q 023469 20 APFFTVTNNDVLALVREWES 39 (282)
Q Consensus 20 Aqyft~~~~~f~~~v~~~~~ 39 (282)
..|+.++...|+++|+.|--
T Consensus 5 p~vi~~d~~~Fr~lVQ~LTG 24 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLTG 24 (31)
T ss_pred CEEEEeCHHHHHHHHHHhHC
Confidence 46788888899999999853
No 165
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=33.50 E-value=1.9e+02 Score=27.83 Aligned_cols=41 Identities=12% Similarity=-0.038 Sum_probs=27.7
Q ss_pred CCCCeeEcceeEEEEEeecCCCC-eEEEc---cCCC-ccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSG---LDGQ-SLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~-w~l~~---~~G~-~~~~~d~VVla 130 (282)
..|++|+.+++|.+|.+ .+++ |.+.. .+|+ ....++.||.|
T Consensus 140 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~~~g~~~~i~a~~VVnA 185 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIR--EGGRVTGVKVEDHKTGEEERIEAQVVINA 185 (516)
T ss_pred HcCCEEEcCcEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCEEEEC
Confidence 35789999999999986 4444 33433 2342 12378999999
No 166
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=33.23 E-value=84 Score=30.94 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=29.3
Q ss_pred CCCCeeEcceeEEEEEeecCCCC---eEEEccCCCccccc-cEEEecCCCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQF-NGVVASDKNVV 135 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~~~~~-d~VVla~~~~p 135 (282)
..+++|+++++|.+|.. ++++ ..+...++.....+ +.||+|.-+-.
T Consensus 229 ~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 229 DLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred hCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 35789999999999886 3443 23333334322357 89999954433
No 167
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=33.14 E-value=93 Score=28.80 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=39.6
Q ss_pred cEEe-CCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 71 KYVG-VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 71 ~yvg-~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
-|+- +.-+.......|+..|.+++.+++|..+.. .++++.+....|.....++.||.|+
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR--EDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE--eCCcEEEEEEcCCEEEEcCEEEECC
Confidence 4443 445555444555667899999999999997 6666655544442223789999994
No 168
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=32.98 E-value=68 Score=33.26 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..+++++++++|.+|.+ .. ..|.+.+|+.+ .||.||||.
T Consensus 71 ~~gI~~~~g~~V~~Id~--~~--~~V~~~~G~~i-~yD~LVIAT 109 (847)
T PRK14989 71 KHGIKVLVGERAITINR--QE--KVIHSSAGRTV-FYDKLIMAT 109 (847)
T ss_pred hCCCEEEcCCEEEEEeC--CC--cEEEECCCcEE-ECCEEEECC
Confidence 35688999999999985 32 34556677654 799999994
No 169
>PTZ00058 glutathione reductase; Provisional
Probab=32.93 E-value=98 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
..++++++++.|.+|+. ..+++..+...+++....+|.||++.
T Consensus 290 ~~GV~i~~~~~V~~I~~-~~~~~v~v~~~~~~~~i~aD~VlvA~ 332 (561)
T PTZ00058 290 KNNINIITHANVEEIEK-VKEKNLTIYLSDGRKYEHFDYVIYCV 332 (561)
T ss_pred HCCCEEEeCCEEEEEEe-cCCCcEEEEECCCCEEEECCEEEECc
Confidence 45789999999999985 12234555443443223799999993
No 170
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=32.33 E-value=92 Score=28.66 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHHHhCCceeeccCcceeeeccCceeeecccCCCCccEEeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCe
Q 023469 32 ALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLW 111 (282)
Q Consensus 32 ~~v~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w 111 (282)
+.+..+.+.-+-..|+....... +... .. ...|..... ..+-++|.+.++..|+++++|.++.. +++
T Consensus 51 ~~~~~~~~~~v~~~W~~~~v~~~--~~~~-----~l-~~~Y~~I~r-~~f~~~l~~~l~~~i~~~~~V~~v~~----~~v 117 (370)
T TIGR01789 51 DAQHAWLADLVQTDWPGYEVRFP--KYRR-----KL-KTAYRSMTS-TRFHEGLLQAFPEGVILGRKAVGLDA----DGV 117 (370)
T ss_pred hhhhhhhhhhheEeCCCCEEECc--chhh-----hc-CCCceEEEH-HHHHHHHHHhhcccEEecCEEEEEeC----CEE
Confidence 34444555556678887433321 1110 01 123443322 55667776666545888999998853 346
Q ss_pred EEEccCCCccccccEEEec
Q 023469 112 SVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 112 ~l~~~~G~~~~~~d~VVla 130 (282)
.+ .+|+.+ .+|.||-|
T Consensus 118 ~l--~dg~~~-~A~~VI~A 133 (370)
T TIGR01789 118 DL--APGTRI-NARSVIDC 133 (370)
T ss_pred EE--CCCCEE-EeeEEEEC
Confidence 66 567654 78999999
No 171
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=32.21 E-value=1.1e+02 Score=26.72 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=29.6
Q ss_pred CCeeEcceeEEEEEeecCCCC---eEEEccCCC---ccccccEEEecCCCCCcchhhhhc
Q 023469 90 GVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ---SLGQFNGVVASDKNVVSPRFRDVT 143 (282)
Q Consensus 90 ~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~---~~~~~d~VVla~~~~pa~~~~~ll 143 (282)
+.+|++++.|.+|.....+++ ..+...++. ....++.|||+ .-+-.+.+||
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIla---AGai~Tp~LL 263 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILA---AGAIGTPRLL 263 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE----SHHHHHHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEec---cCCCCChhhh
Confidence 578999999999965112222 333344444 22357899999 4444444444
No 172
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=31.33 E-value=97 Score=29.87 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=29.7
Q ss_pred CCCCeeEcceeEEEEEeecCCC---CeEEEccCCC-ccccccEEEecCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKN---LWSVSGLDGQ-SLGQFNGVVASDKN 133 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~---~w~l~~~~G~-~~~~~d~VVla~~~ 133 (282)
..+++++++++|.+|.. +++ ++.+...+|+ ....+|.||+|.-+
T Consensus 202 ~~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 202 ERKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HcCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 35788999999999985 444 2455444443 12368999999544
No 173
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=31.24 E-value=1.1e+02 Score=29.01 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCchHHHHHHhc---CCCCeeEcceeEEEEEeecCCCCeEE-EccCCCc-cccccEEEec
Q 023469 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQS-LGQFNGVVAS 130 (282)
Q Consensus 76 ~Gm~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w~l-~~~~G~~-~~~~d~VVla 130 (282)
+|| .+.+.|.+ +.+++++++++|.+++. .+++... ...+|+. ...+|.||+|
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEF--EGGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCCEEEEEEeeCCceEEEECCEEEEe
Confidence 455 34444443 34789999999999986 4444332 2334432 2378999999
No 174
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.84 E-value=93 Score=30.57 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=33.0
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCC-eEEEc-cCCCc-cccc-cEEEecCCCCC
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL-WSVSG-LDGQS-LGQF-NGVVASDKNVV 135 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~-w~l~~-~~G~~-~~~~-d~VVla~~~~p 135 (282)
.+|++.|.+ ..+++|+++++|++|.. ++++ .-+.. .+|+. ...+ +.||||+-+-.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD--DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 666666644 35789999999999975 3332 22211 23432 2234 58999955533
No 175
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=30.31 E-value=1e+02 Score=30.27 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=33.2
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCC---eEEEccCCCcccccc-EEEecCCCCC
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFN-GVVASDKNVV 135 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~~~~~d-~VVla~~~~p 135 (282)
..|.+.|.+ ..+++|++++.|.+|.. ++++ ..+...++.....++ .||+|.-+.+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~--~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLT--EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 345554532 45789999999999986 4442 333333343222464 7999955444
No 176
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=29.34 E-value=45 Score=30.26 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCCceecCCh-hHHHHHHHHHhCCceee
Q 023469 19 GAPFFTVTNN-DVLALVREWESGGLVAE 45 (282)
Q Consensus 19 GAqyft~~~~-~f~~~v~~~~~~g~v~~ 45 (282)
|--||.|+++ +|.+.++.+++.|++..
T Consensus 163 gRGyFiA~s~eef~ek~e~l~~~gvi~~ 190 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVITE 190 (361)
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCcch
Confidence 5679999887 89999999999999955
No 177
>PRK10262 thioredoxin reductase; Provisional
Probab=29.17 E-value=1e+02 Score=27.46 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
.+.+++.+ .|.+|+. .++.|.+..+++ .+ .||.||+|.
T Consensus 76 ~~~~~~~~-~v~~v~~--~~~~~~v~~~~~-~~-~~d~vilAt 113 (321)
T PRK10262 76 FETEIIFD-HINKVDL--QNRPFRLTGDSG-EY-TCDALIIAT 113 (321)
T ss_pred CCCEEEee-EEEEEEe--cCCeEEEEecCC-EE-EECEEEECC
Confidence 44456665 5677876 567798876544 33 799999993
No 178
>PRK07512 L-aspartate oxidase; Provisional
Probab=28.10 E-value=72 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred hHHHHHHhcCCCCeeEcceeEEEEEeecCCCCe---EEEccCCCccccccEEEecCCC
Q 023469 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASDKN 133 (282)
Q Consensus 79 ~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w---~l~~~~G~~~~~~d~VVla~~~ 133 (282)
..|.+.+.+..+++++.++.|..|.. +++.+ .+...++.....+++||||.-+
T Consensus 140 ~~L~~~~~~~~gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 140 RALIAAVRATPSITVLEGAEARRLLV--DDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHhCCCCEEEECcChhheee--cCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 33444443333688999999999875 34432 2332222222368999999544
No 179
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=27.80 E-value=42 Score=27.98 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCceecCChhHHHHHHHHHhCCceeeccCcceeeeccCceeeecccCCCCccEEeCCCchHHHHHHhc
Q 023469 20 APFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCH 87 (282)
Q Consensus 20 Aqyft~~~~~f~~~v~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~~Gm~~l~~~La~ 87 (282)
|--|..++.+-...|+.|...|.|. +.+| +.|+| .|++..-|.++++++.+
T Consensus 120 a~~f~l~t~~~i~ri~~L~~~g~lt------Gv~D-drGkf----------IyIs~eE~~~va~fi~~ 170 (188)
T PF09756_consen 120 AAEFGLRTQDVINRIQELEAEGRLT------GVID-DRGKF----------IYISEEEMEAVAKFIKQ 170 (188)
T ss_dssp HHHH-S-HHHHHHHHHHHHHHSSS-------EEE--TT--E----------EE---------------
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCce------eeEc-CCCCe----------EEecHHHHHHHHHHHHH
Confidence 4456677777888899999988873 3343 34444 48889999999998886
No 180
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.23 E-value=1.1e+02 Score=28.67 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (282)
+.+++++++++|.+++. . .+.+++|+.+ .+|.||++.
T Consensus 201 ~~gI~i~~~~~v~~i~~----~--~v~~~~g~~~-~~D~vl~a~ 237 (438)
T PRK13512 201 KREIPYRLNEEIDAING----N--EVTFKSGKVE-HYDMIIEGV 237 (438)
T ss_pred hcCCEEEECCeEEEEeC----C--EEEECCCCEE-EeCEEEECc
Confidence 45788999999999863 1 3555566554 799999984
No 181
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=27.20 E-value=1.2e+02 Score=29.00 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCeeEcceeEEEEEeecCCCCeE-EEccC-CC-ccccccEEEecC
Q 023469 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLD-GQ-SLGQFNGVVASD 131 (282)
Q Consensus 80 ~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~-l~~~~-G~-~~~~~d~VVla~ 131 (282)
.|.+.+.+..+++++.++.|..|.. +++... +...+ ++ ....++.||+|+
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~~~~i~A~~VVlAt 185 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLI--ETGRVVGVWVWNRETVETCHADAVVLAT 185 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeec--cCCEEEEEEEEECCcEEEEEcCEEEECC
Confidence 3444444334688999999999985 444332 32221 22 223689999994
No 182
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=27.10 E-value=33 Score=24.46 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=22.4
Q ss_pred eecCChhHHHHHH-HHHhCCceeeccCc
Q 023469 23 FTVTNNDVLALVR-EWESGGLVAEWKVN 49 (282)
Q Consensus 23 ft~~~~~f~~~v~-~~~~~g~v~~W~~~ 49 (282)
||-.+++|++.++ +...-=||.+|..+
T Consensus 11 fTe~D~ey~~~~~~~~~~PPIV~~W~~r 38 (81)
T PF15320_consen 11 FTEDDEEYMEYCKRPFPPPPIVEPWNSR 38 (81)
T ss_pred ccccCHHHHHHHhCCCCCCCEecCcccC
Confidence 8899999999997 56667789999763
No 183
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.72 E-value=1.3e+02 Score=28.60 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=29.1
Q ss_pred CeeEcceeEEEEEeecCCCCeEEEccC--C-CccccccEEEecCCCCCc
Q 023469 91 VESKFGVGVGRFEWLEDKNLWSVSGLD--G-QSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 91 ~~v~~~~~V~~i~~~~~~~~w~l~~~~--G-~~~~~~d~VVla~~~~pa 136 (282)
++++++++|.+++. .+++..+...+ | +....+|.||++.-..|.
T Consensus 229 v~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 229 FNIMLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred eEEEcCCEEEEEEE--cCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 67899999999986 45566665433 2 112379999999433343
No 184
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=24.69 E-value=1.9e+02 Score=28.53 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=31.1
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCCeEE---Ecc-CCC----ccccccEEEecC
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSV---SGL-DGQ----SLGQFNGVVASD 131 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w~l---~~~-~G~----~~~~~d~VVla~ 131 (282)
.+|+.-|.+ +.|++++++++|+.|....+++.-++ ... +|+ .+...|.||+|.
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTn 289 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTN 289 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence 444444443 35799999999999986102221222 221 232 245789999983
No 185
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=24.62 E-value=1.1e+02 Score=28.37 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.3
Q ss_pred CchHHHHHHhcC---CCCeeEcceeEEEEEeecCCCC---eEEE-ccCCCc-cccccEEEecCCCCCc
Q 023469 77 GMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL---WSVS-GLDGQS-LGQFNGVVASDKNVVS 136 (282)
Q Consensus 77 Gm~~l~~~La~~---l~~~v~~~~~V~~i~~~~~~~~---w~l~-~~~G~~-~~~~d~VVla~~~~pa 136 (282)
+-..+.+.|.+. .+++|+++++|.+|.. ++++ ..+. ..+|+. ...+++||||.-+...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 344555555543 4689999999999987 4432 2233 234542 2368899999554443
No 186
>PLN02546 glutathione reductase
Probab=24.29 E-value=1.5e+02 Score=29.21 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=30.4
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCc
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (282)
..++++++++.|.++.. ..++...+..++|+. ..+|.||++.-..|.
T Consensus 305 ~~GV~i~~~~~v~~i~~-~~~g~v~v~~~~g~~-~~~D~Viva~G~~Pn 351 (558)
T PLN02546 305 LRGIEFHTEESPQAIIK-SADGSLSLKTNKGTV-EGFSHVMFATGRKPN 351 (558)
T ss_pred HCCcEEEeCCEEEEEEE-cCCCEEEEEECCeEE-EecCEEEEeeccccC
Confidence 45789999999999975 123335555544432 248999998433333
No 187
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=24.12 E-value=3.7e+02 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=27.3
Q ss_pred CCCCeeEcceeEEEEEeecCCCCe-EEEc---cCCC-ccccccEEEec
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVAS 130 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w-~l~~---~~G~-~~~~~d~VVla 130 (282)
..|++++.+++|.+|.+ .++++ .+.. .+|+ ....+|.||.|
T Consensus 161 ~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 161 EHGAQILTYHEVTGLIR--EGDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred hCCCEEEeccEEEEEEE--cCCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 35789999999999987 44442 3332 2232 12278999999
No 188
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=24.03 E-value=1.5e+02 Score=28.04 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=33.9
Q ss_pred CchHHHHHHhc---CCCCeeEcceeEEEEEeecCCCCe-EEEc--cCCC-ccccccEEEecCCC
Q 023469 77 GMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLW-SVSG--LDGQ-SLGQFNGVVASDKN 133 (282)
Q Consensus 77 Gm~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~w-~l~~--~~G~-~~~~~d~VVla~~~ 133 (282)
+...+.+.|.+ ..+++++++++|.+|.. +++++ .+.. .+|+ ....++.||+|.-+
T Consensus 129 ~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~--~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 129 GGKALVNALYRSAERLGVEIRYDAPVTALEL--DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 34455555543 35789999999999986 44443 2332 2332 22267999999543
No 189
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=23.98 E-value=1.7e+02 Score=27.68 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=29.5
Q ss_pred CCCCeeEcceeEEEEEeecCCCCeE-EEccCCC-ccccccEEEecCCCCC
Q 023469 88 QPGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQ-SLGQFNGVVASDKNVV 135 (282)
Q Consensus 88 ~l~~~v~~~~~V~~i~~~~~~~~w~-l~~~~G~-~~~~~d~VVla~~~~p 135 (282)
..+++++++++|.+++.. .+++.. +...+|+ ....+|.||++.-..|
T Consensus 233 ~~gI~i~~~~~v~~i~~~-~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 233 KLGVRVVTGAKVLGLTLK-KDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred hcCCEEEeCcEEEEEEEe-cCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 457899999999999731 123333 3334553 1237899999943333
No 190
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=23.94 E-value=42 Score=31.77 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCCchH-HHHHHhcC-------CCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEec
Q 023469 75 VPGMNS-ICKALCHQ-------PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 75 ~~Gm~~-l~~~La~~-------l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (282)
..-|.- |+++|++- -|+.|+-+..|.++.+ ..+...|...||..+ ..|.||++
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~~~nl~lkL~dG~~l-~tD~vVva 444 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--CCKNLVLKLSDGSEL-RTDLVVVA 444 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--hccceEEEecCCCee-eeeeEEEE
Confidence 334543 46666642 2578999999999987 556678888899776 67999998
No 191
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.47 E-value=89 Score=27.54 Aligned_cols=41 Identities=32% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEEE--cc-CCCc-cccccEEEecC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSVS--GL-DGQS-LGQFNGVVASD 131 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l~--~~-~G~~-~~~~d~VVla~ 131 (282)
.+++++++++|.+++. +.+++.+. .. +|+. ...+|.||-|+
T Consensus 124 ~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgAD 168 (356)
T PF01494_consen 124 RGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGAD 168 (356)
T ss_dssp HTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-S
T ss_pred hhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeeccc
Confidence 4578999999999986 55554443 22 3432 23789999994
No 192
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.13 E-value=2e+02 Score=27.89 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCC-e---EE-EccCCCc-cccccEEEecCCC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNL-W---SV-SGLDGQS-LGQFNGVVASDKN 133 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~-w---~l-~~~~G~~-~~~~d~VVla~~~ 133 (282)
|.+.+.+ .+++|++++.|..|.. ++++ . .+ ...+|+. ...++.||+|.-+
T Consensus 140 L~~~~~~-~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 140 LMEYLIK-ERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHhc-CCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 4443433 5789999999999975 3333 2 12 2245542 2367999999433
No 193
>PLN02697 lycopene epsilon cyclase
Probab=20.97 E-value=2.4e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCeeEcceeEEEEEeecCCCCeEE-EccCCCccccccEEEec
Q 023469 89 PGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQSLGQFNGVVAS 130 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~w~l-~~~~G~~~~~~d~VVla 130 (282)
.++++ +++.|..|.. .++++.+ ...+|..+ .+|.||.|
T Consensus 205 ~GV~~-~~~~V~~I~~--~~~~~~vv~~~dG~~i-~A~lVI~A 243 (529)
T PLN02697 205 SGVSY-LSSKVDRITE--ASDGLRLVACEDGRVI-PCRLATVA 243 (529)
T ss_pred cCCEE-EeeEEEEEEE--cCCcEEEEEEcCCcEE-ECCEEEEC
Confidence 35666 7889999986 5566654 44566554 78999999
No 194
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=20.69 E-value=1.9e+02 Score=27.86 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=30.2
Q ss_pred HHHHhcCCCCeeEcceeEEEEEeecCCCC---eEEEccCCCc-ccccc-EEEecCCCCC
Q 023469 82 CKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFN-GVVASDKNVV 135 (282)
Q Consensus 82 ~~~La~~l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~-~~~~d-~VVla~~~~p 135 (282)
.+.+.+..+++|+++++|.+|.. +++. ..+. .+|+. ...++ .||||.-+..
T Consensus 180 ~~~~~~~~gv~i~~~t~~~~Li~--~~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 180 LAALARFPNARLRLNTPLVELVV--EDGRVVGAVVE-RGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHhCCCCEEEeCCEEEEEEe--cCCEEEEEEEE-ECCcEEEEEeCceEEEeCCCcc
Confidence 33334434789999999999975 4432 2222 23432 22565 7999965543
No 195
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=20.26 E-value=1.1e+02 Score=28.07 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=40.3
Q ss_pred CCccEEeCCCchHHHHHHhcCCC-----CeeEcceeEEEEEeecCCCC--eEEEccCCC-ccccccEEEecCCC
Q 023469 68 MNKKYVGVPGMNSICKALCHQPG-----VESKFGVGVGRFEWLEDKNL--WSVSGLDGQ-SLGQFNGVVASDKN 133 (282)
Q Consensus 68 ~~~~yvg~~Gm~~l~~~La~~l~-----~~v~~~~~V~~i~~~~~~~~--w~l~~~~G~-~~~~~d~VVla~~~ 133 (282)
+.+.|.|-+=|.+|.+.|-+... ++|.++++|..|.+ +.++- ....+.+|+ ....+|.||++.-+
T Consensus 132 s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 132 SGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred CCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence 34555666666777776654321 57899999999986 23332 223344564 23368999999443
No 196
>PRK07121 hypothetical protein; Validated
Probab=20.20 E-value=2.1e+02 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=31.6
Q ss_pred hHHHHHHhc---CCCCeeEcceeEEEEEeecCCCC-eEEEcc-CCCc-cccc-cEEEecCCC
Q 023469 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL-WSVSGL-DGQS-LGQF-NGVVASDKN 133 (282)
Q Consensus 79 ~~l~~~La~---~l~~~v~~~~~V~~i~~~~~~~~-w~l~~~-~G~~-~~~~-d~VVla~~~ 133 (282)
..+.+.|.+ ..+++|+++++|.+|.. ..+++ .-+... +|+. ...+ +.||+|.-+
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIV-DDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 345555543 35689999999999976 12222 223222 3322 2256 899999543
No 197
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=20.18 E-value=2.3e+02 Score=27.91 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCeeEcceeEEEEEeecCCCCeE----EEccCCCc-cccccEEEecCCC
Q 023469 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASDKN 133 (282)
Q Consensus 81 l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~----l~~~~G~~-~~~~d~VVla~~~ 133 (282)
|.+.+.+..+++++.++.|..|.. +++... +...+|+. ...++.||+|+-+
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 333333323578899999999985 444432 33445642 2368999999543
No 198
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=20.11 E-value=1.7e+02 Score=28.14 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=46.0
Q ss_pred EeCCCchHHHHHHhcCCCCeeEcceeEEEEEeecCCCCeEEEccCCCccccccEEEecCCCCCcch
Q 023469 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (282)
Q Consensus 73 vg~~Gm~~l~~~La~~l~~~v~~~~~V~~i~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (282)
...+.+++..+.+.++.++++++++.+.+++-+.+++.-.+...+|..+ .+|-||+-....|.-.
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l-~adlvv~GiG~~p~t~ 316 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTL-EADLVVVGIGIKPNTS 316 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEe-ccCeEEEeeccccccc
Confidence 3445677777777777889999999999998622234456667788764 8999999854445443
No 199
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=20.04 E-value=1.8e+02 Score=28.55 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCeeEcceeEEEEEeecCCCC---eEEEccCCCc-cccc-cEEEecCCC
Q 023469 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQF-NGVVASDKN 133 (282)
Q Consensus 89 l~~~v~~~~~V~~i~~~~~~~~---w~l~~~~G~~-~~~~-d~VVla~~~ 133 (282)
.++++++++.|.+|.. ++++ +.+. .+|+. ...+ ++||||.-+
T Consensus 234 ~Gv~i~~~t~v~~Li~--~~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 234 RGVRILTQTDVESLET--DHGRVIGATVV-QGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred CCCEEEeCCEEEEEEe--eCCEEEEEEEe-cCCeEEEEEccceEEECCCC
Confidence 5789999999999875 3332 3332 23432 1244 689999544
Done!