BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023470
MVTIIPPNPKPWHSPFPTRTKTKTLQPKIVSTLNDSNNETKQSSAGKIKREVLTNEGRTK
LNTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKR
VVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEV
FRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA
DSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE

High Scoring Gene Products

Symbol, full name Information P value
AT3G01660 protein from Arabidopsis thaliana 1.7e-91
AT4G29590 protein from Arabidopsis thaliana 6.5e-35
PFL_1426
Methyltransferase domain protein
protein from Pseudomonas protegens Pf-5 0.00026

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023470
        (282 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084238 - symbol:AT3G01660 "AT3G01660" species...   912  1.7e-91   1
TAIR|locus:2134333 - symbol:AT4G29590 species:3702 "Arabi...   378  6.5e-35   1
UNIPROTKB|Q4KGS8 - symbol:PFL_1426 "Methyltransferase dom...   115  0.00026   1


>TAIR|locus:2084238 [details] [associations]
            symbol:AT3G01660 "AT3G01660" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0008168 "methyltransferase
            activity" evidence=IEA] [GO:0000023 "maltose metabolic process"
            evidence=RCA] [GO:0016556 "mRNA modification" evidence=RCA]
            [GO:0019252 "starch biosynthetic process" evidence=RCA]
            InterPro:IPR013216 Pfam:PF08241 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC009325 GO:GO:0008168 EMBL:BT010699
            EMBL:BT012427 IPI:IPI00527721 RefSeq:NP_186815.1 UniGene:At.41245
            ProteinModelPortal:Q9SS89 SMR:Q9SS89 IntAct:Q9SS89 STRING:Q9SS89
            PaxDb:Q9SS89 PRIDE:Q9SS89 EnsemblPlants:AT3G01660.1 GeneID:821098
            KEGG:ath:AT3G01660 TAIR:At3g01660 eggNOG:NOG27425
            HOGENOM:HOG000010386 InParanoid:Q9SS89 OMA:WVSHLPD PhylomeDB:Q9SS89
            ProtClustDB:CLSN2685010 Genevestigator:Q9SS89 Uniprot:Q9SS89
        Length = 273

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 184/274 (67%), Positives = 213/274 (77%)

Query:    14 SPFPTRTKTKTLQPKIVSTLN--DSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYA 71
             SPF  + K + L+P+I +  N  D  +    SSAG+I+R VL NEGRTKLN   DR+FY+
Sbjct:    11 SPF--QLKPRILRPRITNISNRIDETDPRPSSSAGRIQRLVLNNEGRTKLNADPDREFYS 68

Query:    72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQEL 131
             YPRFV HVD  FIS+LT LYR  LRPGS VLDLMSSWVSHLP+EV Y++VVGHGLNAQEL
Sbjct:    69 YPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLMSSWVSHLPEEVKYEKVVGHGLNAQEL 128

Query:   132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
             A+NPRL+YF VKDLN+DQK EF+   FDAV+C+V VQYLQQPEKVFAEV+RVLKPGGV I
Sbjct:   129 ARNPRLDYFFVKDLNEDQKFEFEDKYFDAVLCSVGVQYLQQPEKVFAEVYRVLKPGGVLI 188

Query:   192 VSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSP 251
             VSFSNRMFYEKAI  WRDGT Y R+QLVVQYFQ +EG+T PEI+R+ P     AQ     
Sbjct:   189 VSFSNRMFYEKAIRVWRDGTEYSRIQLVVQYFQSIEGFTQPEIIRQQPG----AQ----- 239

Query:   252 ISWLMRLLGFL---SGSDPFYAVIAYKNFKPVYE 282
             IS L RL+GF+   S  DPF AVIAYKNFKP+YE
Sbjct:   240 ISVLTRLMGFIGLASTPDPFNAVIAYKNFKPIYE 273


>TAIR|locus:2134333 [details] [associations]
            symbol:AT4G29590 species:3702 "Arabidopsis thaliana"
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0008168
            "methyltransferase activity" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] InterPro:IPR013216 Pfam:PF08241
            GO:GO:0009507 EMBL:CP002687 EMBL:AL161575 GO:GO:0008168
            EMBL:AL079344 IPI:IPI00536728 PIR:T09922 RefSeq:NP_194688.1
            UniGene:At.3482 ProteinModelPortal:Q9SU88 SMR:Q9SU88 STRING:Q9SU88
            PRIDE:Q9SU88 EnsemblPlants:AT4G29590.1 GeneID:829080
            KEGG:ath:AT4G29590 TAIR:At4g29590 InParanoid:Q9SU88 OMA:IDVFKEM
            PhylomeDB:Q9SU88 ProtClustDB:CLSN2915816 ArrayExpress:Q9SU88
            Genevestigator:Q9SU88 Uniprot:Q9SU88
        Length = 317

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 78/175 (44%), Positives = 105/175 (60%)

Query:    65 SDRDFYAYPRFVTHVDGGFISTLTNLYRQML----RPGSEVLDLMSSWVSHLPQEVSYKR 120
             SD  FY  PRFVTH+D   I+ LT  Y ++L     PG  +LD+ SSWVSH P     +R
Sbjct:   120 SDSTFYEAPRFVTHIDDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQER 179

Query:   121 VVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEV 180
             +VG G+N +EL +NP L  +IV+DLN +  L F+  SF  +   VSV YL +P +VF E+
Sbjct:   180 IVGMGMNEEELKRNPVLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEM 239

Query:   181 FRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIV 235
              R+LKPGG+ ++SFSNR F+ KAIS W          +V  YF    G+  P+ V
Sbjct:   240 NRILKPGGLALMSFSNRCFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAV 294


>UNIPROTKB|Q4KGS8 [details] [associations]
            symbol:PFL_1426 "Methyltransferase domain protein"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR013216 Pfam:PF08241 EMBL:CP000076
            GenomeReviews:CP000076_GR GO:GO:0008168 eggNOG:COG0500
            RefSeq:YP_258555.1 ProteinModelPortal:Q4KGS8 SMR:Q4KGS8
            STRING:Q4KGS8 GeneID:3478968 KEGG:pfl:PFL_1426 PATRIC:19872065
            HOGENOM:HOG000005493 OMA:VEHPIFT
            BioCyc:PFLU220664:GIX8-1433-MONOMER Uniprot:Q4KGS8
        Length = 300

 Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
 Identities = 47/174 (27%), Positives = 75/174 (43%)

Query:    62 NTYSDRDFY-AYPRFVTHVDGGFISTLTNLYRQMLRP--GSEVLDLMSS--WVSHLPQEV 116
             N Y D  F+ AY +    + G   +      + +L P  G  VLDL     W S    E 
Sbjct:    62 NIYDDPIFFQAYSQMGRSLGGLDAAPEWPALQALLPPMNGLRVLDLGCGYGWFSRWASEH 121

Query:   117 SYKRVVGHGLNAQELA------KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
               ++VVG  ++ + LA        P ++Y   +DL Q   L    CSFD    ++++ Y+
Sbjct:   122 GARQVVGLDVSQKMLATARATTSAPNVQYQ-QEDLEQ---LRLPACSFDLAYSSLALHYI 177

Query:   171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224
             +    +FA+V+  L PG   + S  + +F       W+   A GR    V  +Q
Sbjct:   178 KDLPGLFAQVYAALVPGARLVFSIEHPIFMAPRNPGWQVD-AQGRQSWPVDSYQ 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       282   0.00083  115 3  11 22  0.36    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  215 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.26u 0.11s 24.37t   Elapsed:  00:00:01
  Total cpu time:  24.26u 0.11s 24.37t   Elapsed:  00:00:01
  Start:  Fri May 10 04:07:23 2013   End:  Fri May 10 04:07:24 2013

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