BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023470
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 84 ISTLTNLYRQMLRPGSEVLDLMSS---WVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYF 140
I+ + +L PG +L++ + W+ LP Y + VG + LA R
Sbjct: 23 IAEEERALKGLLPPGESLLEVGAGTGYWLRRLP----YPQKVGVEPSEAXLAVGRRRAPE 78
Query: 141 IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
+ L F SFD V+ ++++++ E+V E RVL+PGG +V
Sbjct: 79 ATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 84 ISTLTNLYRQMLRPGSEVLDLMSS--WVSHLPQEVSYKRVVGHGLN------AQELAKNP 135
I TL L + + +VLDL S L ++ ++ VVG ++ A+E AK+
Sbjct: 25 IETLEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFE-VVGVDISEDXIRKAREYAKSR 83
Query: 136 RLEY-FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIV 192
FIV D +KL F+ +FD V+ S+ + + E +VF EV RVLKP G FI
Sbjct: 84 ESNVEFIVGDA---RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIX 140
Query: 193 SFSN 196
F++
Sbjct: 141 YFTD 144
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV---SFSNRMFY---EKAI 204
L F+ SFD + +++LQ PE+ + +VLKPGG V + F+ +KAI
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI 158
Query: 205 SAW 207
AW
Sbjct: 159 EAW 161
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 7/153 (4%)
Query: 62 NTYSDRDFYA-YPRFVTHVDGGFISTLTNLYRQMLRP--GSEVLDLMSS--WVSHLPQEV 116
N Y DF+A Y + ++G + R L G ++DL W E
Sbjct: 5 NIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEH 64
Query: 117 SYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174
V+G L+ + LA+ + I + KL SFD ++++ Y++
Sbjct: 65 GASYVLGLDLSEKXLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA 124
Query: 175 KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207
++F V + L PGG F+ S + ++ A W
Sbjct: 125 RLFRTVHQALSPGGHFVFSTEHPIYXAPARPGW 157
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 80 DGGFISTLTNLYRQMLRPGSEVLDLM--SSWVSHLPQEVSYKRVVGHGLN------AQEL 131
D G ST+ + Q ++ +EVLD+ + ++ YK VG ++ +E
Sbjct: 36 DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK-AVGVDISEVXIQKGKER 94
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+ P L FI DL+ L F++ F+A+ S+++ ++P + E+ RVLK G
Sbjct: 95 GEGPDLS-FIKGDLSS---LPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYAC 150
Query: 192 VSF 194
++
Sbjct: 151 IAI 153
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 157 SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197
SFD + ++ ++ PE+ E +R+LK GG IV +R
Sbjct: 102 SFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 149 QKLEFDHCSFDAVVCAVSV-QYLQQPEKVFAEVFRVLKPGGVFIVSFSN-RMFYEKAI-- 204
+ L F +F+AV+ V Y++ +K F+E+ RVL P G+ I + N F ++ I
Sbjct: 106 EDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQXIEK 165
Query: 205 SAWRDGTAYGRVQ 217
AW T + + Q
Sbjct: 166 DAWDQITRFLKTQ 178
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197
DAV + ++++PE A + + LK GG F+ F +
Sbjct: 118 LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 157 SFDAVVCAVS-VQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194
FDAV S + Y + + K+F++V LKPGGVFI F
Sbjct: 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 186 PGGVFIVSFSNRMFYEKAISA-----WRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240
PGG FIV+ S R+ + A G + + GY P + +L
Sbjct: 151 PGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKD 210
Query: 241 D----SAAAQEDKSPISWLMRLLGFLSGSDPFYAV 271
S A K P LMR LG L+ D YAV
Sbjct: 211 GTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAV 245
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 186 PGGVFIVSFSNRMFYEKAISA-----WRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240
PGG FIV+ S R+ + A G + + GY P + +L
Sbjct: 148 PGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKD 207
Query: 241 D----SAAAQEDKSPISWLMRLLGFLSGSDPFYAV 271
S A K P LMR LG L+ D YAV
Sbjct: 208 GTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAV 242
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 79 VDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQE--LAKN-- 134
V G L N + +L PG EV+ WVS++PQ + + G +N E ++KN
Sbjct: 106 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII----LAGGTVNVVETFMSKNFQ 161
Query: 135 PRLE 138
P LE
Sbjct: 162 PSLE 165
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
L F+ SFDAV S+ + + E RVL+PGG ++
Sbjct: 123 LPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIA 165
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 151 LEFDHCSFDAVVCAVSVQYLQQPE---KVFAEVFRVLKPGG-VFIVSFS 195
L F SFD V + + P+ ++ EVFRVLKPG +++V F
Sbjct: 95 LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
+ L F SFD + C + + K EV RVLK G F++
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 122
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 78 HVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVS--YKRVVGHGLNAQELAKNP 135
H G ++ L + L+ EVLD+ + H+ + K+VV L +++ K
Sbjct: 20 HAKGSDLAKLXQI--AALKGNEEVLDVATGG-GHVANAFAPFVKKVVAFDLT-EDILKVA 75
Query: 136 RLEYFIVKDLNQDQKLE----------FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLK 185
R FI + N Q++E F F V C ++ + P +E +RVLK
Sbjct: 76 RA--FI--EGNGHQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK 131
Query: 186 PGGVFIV 192
GG ++
Sbjct: 132 KGGQLLL 138
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 15/58 (25%)
Query: 149 QKLEFDHCSFDAVV---------------CAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+KL+F SFD V+ VS + + ++V +EV RVL PGG FI
Sbjct: 99 RKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 152 EFDHCS-----------FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+F HC+ D ++ ++++ P V ++ VL+PGGV + F N
Sbjct: 120 QFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 152 EFDHCS-----------FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+F HC+ D ++ ++++ P V ++ VL+PGGV + F N
Sbjct: 120 QFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 40 TKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFIS--TLTNLYRQMLRP 97
T Q+SA + E LT+ + +LN DR F + H GG I+ L R+ + P
Sbjct: 52 TNQTSAIE-DLEELTDLYKQELNLRPDRPFVLF----GHSMGGMITFRLAQKLEREGIFP 106
Query: 98 GSEVLD------LMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD 148
+ ++ + VSHLP + ++ G EL +N + F + D
Sbjct: 107 QAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSFRSD 163
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGKQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 THVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSY 118
T V G L NL++ +L PG EV+ L WVS+ P+ V +
Sbjct: 94 TIVTVGGKQALFNLFQAILDPGDEVIVLSPYWVSY-PEMVRF 134
>pdb|3OK8|A Chain A, I-Bar Of Pinkbar
pdb|3OK8|B Chain B, I-Bar Of Pinkbar
Length = 222
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 100 EVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFD 159
E+L MS HL ++ HG Q + KN +L+ +KD Q ++E+ H + +
Sbjct: 75 EILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAAN 134
Query: 160 AVVC 163
C
Sbjct: 135 LEKC 138
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 106 SSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVV 162
++W L QE + + GL PRL + +LN ++K + C D+
Sbjct: 61 NTWAVDLSQEXLSEAENKFRSQGLK-------PRLACQDISNLNINRKFDLITCCLDSTN 113
Query: 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+ L+ K F V LK GGVFI
Sbjct: 114 YIIDSDDLK---KYFKAVSNHLKEGGVFI 139
>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
Length = 313
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 141 IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
++ D +D ++ FD CS VC S + +Q + + L PGG FI
Sbjct: 103 LLIDKFRDPQMCFDICSC-QFVCHYSFESYEQADMMLRNACERLSPGGYFI 152
>pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
Length = 297
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+L + ++V+ EVFR+L PGG ++ +
Sbjct: 72 FLDELDRVWREVFRLLVPGGRLVIVVGD 99
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+L + ++V+ EVFR+L PGG ++ +
Sbjct: 72 FLDELDRVWREVFRLLVPGGRLVIVVGD 99
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 170 LQQPEKVFAEVFRVLKPGGVFI 191
L QPE+V + LKPGG F+
Sbjct: 170 LPQPERVVEHAAKALKPGGFFV 191
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 170 LQQPEKVFAEVFRVLKPGGVFI 191
L QPE+V + LKPGG F+
Sbjct: 170 LPQPERVVEHAAKALKPGGFFV 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,821,205
Number of Sequences: 62578
Number of extensions: 353810
Number of successful extensions: 1035
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 34
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)