Query 023470
Match_columns 282
No_of_seqs 302 out of 2978
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 6.1E-21 1.3E-25 160.7 9.1 94 97-193 51-155 (238)
2 PF01209 Ubie_methyltran: ubiE 99.8 5.7E-20 1.2E-24 156.0 8.6 150 95-247 45-217 (233)
3 COG2227 UbiG 2-polyprenyl-3-me 99.8 6.2E-20 1.3E-24 152.2 7.0 169 97-276 59-242 (243)
4 PLN02396 hexaprenyldihydroxybe 99.8 3.1E-19 6.8E-24 157.9 11.0 166 97-276 131-316 (322)
5 PRK11088 rrmA 23S rRNA methylt 99.8 4.4E-18 9.6E-23 148.4 12.3 165 31-205 17-192 (272)
6 PF13489 Methyltransf_23: Meth 99.8 1.6E-18 3.5E-23 138.7 8.3 103 91-198 16-119 (161)
7 PLN02233 ubiquinone biosynthes 99.8 5.1E-18 1.1E-22 146.9 11.6 149 95-247 71-245 (261)
8 PRK05785 hypothetical protein; 99.8 9.6E-18 2.1E-22 142.1 12.5 111 81-195 35-147 (226)
9 PF08241 Methyltransf_11: Meth 99.7 2.2E-18 4.7E-23 125.5 5.8 88 102-192 1-95 (95)
10 KOG1540 Ubiquinone biosynthesi 99.7 2.5E-17 5.3E-22 136.9 10.8 156 88-246 89-277 (296)
11 PRK10258 biotin biosynthesis p 99.7 6.9E-17 1.5E-21 139.2 13.8 109 97-208 42-154 (251)
12 PRK15068 tRNA mo(5)U34 methylt 99.7 1.5E-16 3.3E-21 141.5 11.7 171 97-276 122-312 (322)
13 PLN02244 tocopherol O-methyltr 99.7 7.4E-17 1.6E-21 144.8 9.6 96 96-194 117-223 (340)
14 TIGR00452 methyltransferase, p 99.7 1.8E-16 4E-21 139.7 11.3 172 96-276 120-311 (314)
15 TIGR02752 MenG_heptapren 2-hep 99.7 3.4E-16 7.3E-21 133.2 11.9 149 95-248 43-216 (231)
16 PRK11036 putative S-adenosyl-L 99.7 2.9E-16 6.4E-21 135.7 10.9 107 89-198 36-153 (255)
17 PRK14103 trans-aconitate 2-met 99.7 2E-16 4.4E-21 136.6 9.7 97 96-196 28-128 (255)
18 PTZ00098 phosphoethanolamine N 99.7 8.3E-16 1.8E-20 133.3 12.8 98 95-195 50-157 (263)
19 PRK15451 tRNA cmo(5)U34 methyl 99.7 7.4E-16 1.6E-20 132.5 11.7 169 74-248 34-228 (247)
20 KOG4300 Predicted methyltransf 99.7 3.2E-16 6.9E-21 126.4 8.7 92 99-193 78-181 (252)
21 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.4E-15 3E-20 135.2 12.8 96 96-194 112-215 (340)
22 PF07021 MetW: Methionine bios 99.6 1.1E-15 2.3E-20 123.5 9.7 111 89-204 5-119 (193)
23 KOG1270 Methyltransferases [Co 99.6 4.4E-16 9.6E-21 130.2 7.1 104 98-203 90-204 (282)
24 PRK11873 arsM arsenite S-adeno 99.6 6E-15 1.3E-19 128.6 13.9 97 94-193 74-182 (272)
25 TIGR02072 BioC biotin biosynth 99.6 5.2E-15 1.1E-19 126.1 13.2 119 86-207 22-148 (240)
26 PLN02336 phosphoethanolamine N 99.6 3.1E-15 6.7E-20 140.4 12.3 97 95-195 264-370 (475)
27 TIGR00740 methyltransferase, p 99.6 4.3E-15 9.4E-20 127.1 11.6 160 83-247 39-224 (239)
28 PF08242 Methyltransf_12: Meth 99.6 5.2E-16 1.1E-20 114.5 4.9 89 102-190 1-99 (99)
29 PF13847 Methyltransf_31: Meth 99.6 1.1E-15 2.5E-20 121.6 7.1 96 97-196 3-112 (152)
30 PRK01683 trans-aconitate 2-met 99.6 4.6E-15 9.9E-20 128.4 9.4 97 96-196 30-132 (258)
31 PRK08317 hypothetical protein; 99.6 3.6E-14 7.8E-19 120.8 13.9 98 95-195 17-125 (241)
32 COG2230 Cfa Cyclopropane fatty 99.6 3.4E-14 7.3E-19 122.0 13.5 109 79-193 53-175 (283)
33 PRK06202 hypothetical protein; 99.6 1.1E-14 2.4E-19 124.1 10.4 143 96-247 59-219 (232)
34 smart00138 MeTrc Methyltransfe 99.6 1.3E-14 2.8E-19 125.7 9.6 94 97-193 99-241 (264)
35 PF12847 Methyltransf_18: Meth 99.5 1E-14 2.3E-19 109.7 6.7 95 97-194 1-111 (112)
36 smart00828 PKS_MT Methyltransf 99.5 1.9E-14 4E-19 121.9 7.9 92 100-195 2-105 (224)
37 PRK11207 tellurite resistance 99.5 4.1E-14 8.8E-19 117.6 9.1 92 97-192 30-132 (197)
38 TIGR02081 metW methionine bios 99.5 7.8E-14 1.7E-18 115.6 10.6 106 91-201 7-116 (194)
39 PF02353 CMAS: Mycolic acid cy 99.5 4E-14 8.7E-19 122.9 8.2 93 95-193 60-165 (273)
40 PF08003 Methyltransf_9: Prote 99.5 8.9E-14 1.9E-18 119.7 9.9 170 97-276 115-305 (315)
41 TIGR00477 tehB tellurite resis 99.5 7.2E-14 1.6E-18 115.9 7.7 93 97-193 30-132 (195)
42 TIGR03587 Pse_Me-ase pseudamin 99.5 2.7E-13 5.9E-18 113.1 10.7 94 94-193 40-141 (204)
43 PF13649 Methyltransf_25: Meth 99.5 8.3E-15 1.8E-19 108.5 1.2 85 101-188 1-101 (101)
44 PRK00216 ubiE ubiquinone/menaq 99.4 4.5E-13 9.8E-18 114.2 10.0 95 97-194 51-158 (239)
45 PRK06922 hypothetical protein; 99.4 2.7E-13 5.8E-18 128.0 8.5 95 97-194 418-537 (677)
46 PRK12335 tellurite resistance 99.4 2.3E-13 5E-18 119.6 7.7 94 97-194 120-223 (287)
47 PRK00107 gidB 16S rRNA methylt 99.4 8.1E-13 1.7E-17 108.5 10.1 96 93-196 41-147 (187)
48 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.9E-12 4.1E-17 109.2 11.8 95 97-194 39-143 (223)
49 KOG1541 Predicted protein carb 99.4 1.6E-12 3.5E-17 106.1 9.9 95 98-194 51-160 (270)
50 PRK11705 cyclopropane fatty ac 99.4 8.9E-13 1.9E-17 120.0 9.2 95 95-195 165-268 (383)
51 PLN02336 phosphoethanolamine N 99.4 1.2E-12 2.6E-17 122.9 9.6 96 97-193 37-141 (475)
52 PLN02232 ubiquinone biosynthes 99.4 9.1E-13 2E-17 105.8 7.4 123 122-247 1-144 (160)
53 TIGR01983 UbiG ubiquinone bios 99.4 2.4E-12 5.1E-17 108.9 10.0 99 97-198 45-153 (224)
54 PRK05134 bifunctional 3-demeth 99.4 6.4E-13 1.4E-17 113.2 6.3 99 97-198 48-155 (233)
55 COG4106 Tam Trans-aconitate me 99.4 8.8E-13 1.9E-17 107.4 6.3 97 97-197 30-132 (257)
56 KOG2361 Predicted methyltransf 99.4 4.6E-12 1E-16 105.0 10.6 117 80-196 53-185 (264)
57 PRK00121 trmB tRNA (guanine-N( 99.4 2E-12 4.3E-17 107.8 8.5 106 97-204 40-166 (202)
58 TIGR02021 BchM-ChlM magnesium 99.4 4.3E-12 9.2E-17 107.2 10.1 92 96-193 54-157 (219)
59 PRK11188 rrmJ 23S rRNA methylt 99.4 1.1E-11 2.4E-16 103.8 12.1 100 95-197 49-168 (209)
60 TIGR03840 TMPT_Se_Te thiopurin 99.3 9.1E-12 2E-16 104.5 11.3 95 96-193 33-151 (213)
61 TIGR00091 tRNA (guanine-N(7)-) 99.3 3.1E-12 6.7E-17 106.0 8.1 104 97-203 16-141 (194)
62 KOG3010 Methyltransferase [Gen 99.3 3.8E-12 8.3E-17 105.4 8.2 92 100-192 36-134 (261)
63 PF03848 TehB: Tellurite resis 99.3 3.2E-12 7E-17 104.6 6.9 91 97-193 30-132 (192)
64 TIGR00138 gidB 16S rRNA methyl 99.3 9.7E-12 2.1E-16 101.8 9.3 91 97-195 42-143 (181)
65 PRK04266 fibrillarin; Provisio 99.3 4.6E-11 1E-15 101.0 12.7 96 94-195 69-177 (226)
66 TIGR02469 CbiT precorrin-6Y C5 99.3 1.8E-11 4E-16 93.4 9.3 94 96-194 18-122 (124)
67 COG4976 Predicted methyltransf 99.3 8.6E-13 1.9E-17 108.3 1.8 140 98-240 126-269 (287)
68 PF05148 Methyltransf_8: Hypot 99.3 1.1E-11 2.4E-16 101.3 7.8 110 72-193 48-157 (219)
69 PLN02585 magnesium protoporphy 99.3 2.3E-11 5E-16 107.6 10.5 102 85-194 131-249 (315)
70 PRK13255 thiopurine S-methyltr 99.3 3.4E-11 7.4E-16 101.4 9.9 95 95-192 35-153 (218)
71 PTZ00146 fibrillarin; Provisio 99.2 1.5E-10 3.3E-15 100.3 13.0 99 95-195 130-238 (293)
72 TIGR00406 prmA ribosomal prote 99.2 6.1E-11 1.3E-15 104.2 10.7 104 88-195 150-260 (288)
73 PRK13944 protein-L-isoaspartat 99.2 4.2E-11 9.1E-16 100.1 8.9 92 95-195 70-174 (205)
74 PRK00377 cbiT cobalt-precorrin 99.2 2.1E-10 4.6E-15 95.3 12.9 97 94-195 37-146 (198)
75 PRK00517 prmA ribosomal protei 99.2 4.2E-11 9.1E-16 103.2 8.2 103 87-194 109-213 (250)
76 PLN03075 nicotianamine synthas 99.2 5.5E-11 1.2E-15 103.4 8.6 95 97-195 123-234 (296)
77 TIGR00537 hemK_rel_arch HemK-r 99.2 8.5E-11 1.8E-15 96.1 8.9 94 97-195 19-141 (179)
78 TIGR03438 probable methyltrans 99.2 1.2E-10 2.6E-15 103.0 10.4 112 82-195 48-178 (301)
79 PF03291 Pox_MCEL: mRNA cappin 99.2 3.2E-11 6.9E-16 107.4 6.5 105 97-201 62-193 (331)
80 TIGR02716 C20_methyl_CrtF C-20 99.2 1.2E-10 2.5E-15 103.4 9.8 93 95-193 147-253 (306)
81 PF05401 NodS: Nodulation prot 99.2 4.5E-11 9.7E-16 97.0 6.4 115 99-224 45-169 (201)
82 KOG3045 Predicted RNA methylas 99.2 9.6E-11 2.1E-15 97.9 8.4 86 96-194 179-264 (325)
83 TIGR00438 rrmJ cell division p 99.2 2.5E-10 5.4E-15 94.1 10.7 100 94-196 29-148 (188)
84 KOG2940 Predicted methyltransf 99.2 7.8E-11 1.7E-15 96.9 7.4 106 97-205 72-185 (325)
85 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.5E-10 3.3E-15 104.3 9.9 106 98-204 123-245 (390)
86 PRK08287 cobalt-precorrin-6Y C 99.1 2.4E-10 5.1E-15 94.1 9.3 93 95-195 29-132 (187)
87 PRK07580 Mg-protoporphyrin IX 99.1 2E-10 4.4E-15 97.5 9.1 87 96-188 62-160 (230)
88 PRK13942 protein-L-isoaspartat 99.1 1.7E-10 3.8E-15 96.8 8.3 92 95-195 74-177 (212)
89 KOG1975 mRNA cap methyltransfe 99.1 8.7E-11 1.9E-15 101.1 6.4 113 90-202 110-245 (389)
90 PF05175 MTS: Methyltransferas 99.1 4.3E-10 9.3E-15 91.2 10.1 104 87-196 23-142 (170)
91 PRK09489 rsmC 16S ribosomal RN 99.1 3.1E-10 6.7E-15 101.8 10.1 93 98-195 197-304 (342)
92 PRK15001 SAM-dependent 23S rib 99.1 2.6E-10 5.7E-15 103.1 9.1 93 98-194 229-340 (378)
93 TIGR01177 conserved hypothetic 99.1 5.3E-10 1.2E-14 100.2 10.1 100 95-197 180-297 (329)
94 TIGR00080 pimt protein-L-isoas 99.1 5.5E-10 1.2E-14 94.0 8.8 92 95-195 75-178 (215)
95 PRK07402 precorrin-6B methylas 99.1 1.6E-09 3.5E-14 89.9 11.2 96 96-197 39-145 (196)
96 PRK14967 putative methyltransf 99.1 1.2E-09 2.5E-14 92.6 10.4 98 95-196 34-161 (223)
97 COG2264 PrmA Ribosomal protein 99.1 2.9E-10 6.4E-15 98.7 6.8 105 86-193 151-262 (300)
98 cd02440 AdoMet_MTases S-adenos 99.0 9.3E-10 2E-14 80.1 8.0 91 100-193 1-103 (107)
99 TIGR03534 RF_mod_PrmC protein- 99.0 1.5E-09 3.3E-14 93.2 10.1 95 97-195 87-218 (251)
100 PF13659 Methyltransf_26: Meth 99.0 2.9E-10 6.2E-15 86.1 4.7 96 98-196 1-117 (117)
101 PRK14968 putative methyltransf 99.0 2.3E-09 4.9E-14 88.0 9.7 96 96-195 22-149 (188)
102 PF06325 PrmA: Ribosomal prote 99.0 3.3E-10 7.2E-15 99.1 4.7 101 85-193 149-258 (295)
103 PRK00312 pcm protein-L-isoaspa 99.0 2.1E-09 4.6E-14 90.2 8.1 92 95-195 76-176 (212)
104 TIGR03533 L3_gln_methyl protei 99.0 3E-09 6.5E-14 93.3 9.3 96 97-196 121-253 (284)
105 PHA03411 putative methyltransf 99.0 4.5E-09 9.9E-14 90.3 10.0 96 97-196 64-185 (279)
106 PF05219 DREV: DREV methyltran 99.0 3.2E-09 6.9E-14 89.8 8.7 93 98-194 95-188 (265)
107 TIGR00536 hemK_fam HemK family 99.0 3.3E-09 7.2E-14 93.1 9.1 94 99-196 116-246 (284)
108 PRK13256 thiopurine S-methyltr 98.9 4.5E-09 9.7E-14 88.5 8.5 94 96-194 42-163 (226)
109 KOG1331 Predicted methyltransf 98.9 3.1E-09 6.8E-14 90.5 7.2 96 94-193 42-142 (293)
110 KOG2899 Predicted methyltransf 98.9 5.8E-09 1.3E-13 86.7 8.2 146 94-239 55-260 (288)
111 PRK11805 N5-glutamine S-adenos 98.9 6.8E-09 1.5E-13 91.9 9.3 94 99-196 135-265 (307)
112 PRK14966 unknown domain/N5-glu 98.9 9.5E-09 2.1E-13 93.4 9.6 109 85-195 239-382 (423)
113 PRK14901 16S rRNA methyltransf 98.9 1.6E-08 3.4E-13 94.0 11.1 96 96-194 251-384 (434)
114 PRK13943 protein-L-isoaspartat 98.9 1.2E-08 2.5E-13 90.7 9.5 92 95-195 78-181 (322)
115 PRK00811 spermidine synthase; 98.8 1.3E-08 2.9E-13 89.1 9.1 100 96-197 75-194 (283)
116 PRK14904 16S rRNA methyltransf 98.8 9.6E-09 2.1E-13 95.7 8.6 96 96-195 249-378 (445)
117 PRK01581 speE spermidine synth 98.8 2.5E-08 5.3E-13 89.0 9.8 111 85-197 138-271 (374)
118 TIGR00563 rsmB ribosomal RNA s 98.8 1.2E-08 2.5E-13 94.7 8.1 99 96-195 237-369 (426)
119 PF06080 DUF938: Protein of un 98.8 4.2E-08 9.1E-13 80.7 9.8 108 85-193 12-140 (204)
120 KOG1271 Methyltransferases [Ge 98.8 9.3E-09 2E-13 81.9 5.3 94 99-195 69-182 (227)
121 PF01739 CheR: CheR methyltran 98.8 1.1E-08 2.3E-13 84.6 5.8 94 97-193 31-174 (196)
122 COG4123 Predicted O-methyltran 98.8 1.5E-08 3.3E-13 85.8 6.8 98 97-195 44-171 (248)
123 PRK04457 spermidine synthase; 98.7 3.1E-08 6.8E-13 85.8 8.2 99 96-196 65-179 (262)
124 PRK10901 16S rRNA methyltransf 98.7 3.1E-08 6.8E-13 91.8 8.6 98 95-195 242-373 (427)
125 COG2242 CobL Precorrin-6B meth 98.7 9.4E-08 2E-12 77.1 9.8 96 94-196 31-137 (187)
126 PRK09328 N5-glutamine S-adenos 98.7 3.3E-08 7.3E-13 86.2 8.0 96 96-195 107-239 (275)
127 TIGR03704 PrmC_rel_meth putati 98.7 9.1E-08 2E-12 82.4 10.5 97 98-196 87-218 (251)
128 PF05891 Methyltransf_PK: AdoM 98.7 2.9E-08 6.4E-13 82.0 6.2 93 98-193 56-160 (218)
129 COG2813 RsmC 16S RNA G1207 met 98.7 1.3E-07 2.7E-12 82.0 10.3 93 98-195 159-267 (300)
130 PF01135 PCMT: Protein-L-isoas 98.7 2.6E-08 5.7E-13 83.1 6.0 92 95-195 70-173 (209)
131 PHA03412 putative methyltransf 98.7 1E-07 2.2E-12 80.3 9.3 89 97-189 49-158 (241)
132 PF02390 Methyltransf_4: Putat 98.7 3.2E-08 7E-13 81.9 6.3 106 100-205 20-144 (195)
133 PRK14903 16S rRNA methyltransf 98.7 3.3E-08 7.2E-13 91.6 7.0 99 95-196 235-368 (431)
134 KOG1269 SAM-dependent methyltr 98.7 2.7E-08 5.8E-13 89.4 6.0 103 88-193 101-214 (364)
135 PF05724 TPMT: Thiopurine S-me 98.7 7.3E-08 1.6E-12 81.1 8.2 95 95-192 35-153 (218)
136 PF03141 Methyltransf_29: Puta 98.7 1.4E-08 3E-13 92.9 4.1 112 82-195 100-220 (506)
137 PRK10611 chemotaxis methyltran 98.7 1E-07 2.3E-12 83.1 9.3 93 98-193 116-261 (287)
138 PRK01544 bifunctional N5-gluta 98.7 4.8E-08 1E-12 92.2 7.4 94 98-195 139-270 (506)
139 TIGR00417 speE spermidine synt 98.7 9E-08 1.9E-12 83.4 8.6 99 97-197 72-189 (270)
140 PRK03612 spermidine synthase; 98.7 9.2E-08 2E-12 90.7 9.2 101 95-197 295-418 (521)
141 KOG2904 Predicted methyltransf 98.7 1.5E-07 3.4E-12 79.7 9.3 128 82-209 132-300 (328)
142 PF11968 DUF3321: Putative met 98.6 1.2E-07 2.6E-12 78.2 8.2 89 98-197 52-152 (219)
143 TIGR00446 nop2p NOL1/NOP2/sun 98.6 7.4E-08 1.6E-12 83.7 6.7 98 95-195 69-200 (264)
144 smart00650 rADc Ribosomal RNA 98.6 1.4E-07 3.1E-12 76.3 7.7 134 96-245 12-154 (169)
145 COG2519 GCD14 tRNA(1-methylade 98.6 2.8E-07 6.1E-12 77.7 8.9 134 93-252 90-236 (256)
146 KOG1499 Protein arginine N-met 98.6 2.5E-07 5.5E-12 81.3 8.3 118 95-215 58-196 (346)
147 PRK14902 16S rRNA methyltransf 98.6 1.6E-07 3.6E-12 87.5 7.6 95 96-194 249-379 (444)
148 COG1352 CheR Methylase of chem 98.5 4.9E-07 1.1E-11 78.0 9.6 94 97-193 96-240 (268)
149 PF00891 Methyltransf_2: O-met 98.5 3.9E-07 8.5E-12 78.0 8.5 91 96-193 99-198 (241)
150 COG2518 Pcm Protein-L-isoaspar 98.5 3.3E-07 7.1E-12 75.6 7.5 92 95-195 70-170 (209)
151 COG2890 HemK Methylase of poly 98.5 3.5E-07 7.6E-12 79.9 8.2 91 100-195 113-239 (280)
152 PLN02366 spermidine synthase 98.5 6.7E-07 1.5E-11 79.1 9.5 99 95-195 89-207 (308)
153 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.5E-07 5.4E-12 90.8 6.4 97 97-195 538-657 (702)
154 PRK15128 23S rRNA m(5)C1962 me 98.5 3.4E-07 7.4E-12 83.8 6.8 100 95-194 218-339 (396)
155 COG1041 Predicted DNA modifica 98.4 9E-07 1.9E-11 78.2 8.4 102 94-195 194-311 (347)
156 COG0500 SmtA SAM-dependent met 98.4 1.7E-06 3.7E-11 67.3 9.2 95 101-197 52-158 (257)
157 PLN02781 Probable caffeoyl-CoA 98.4 4.5E-07 9.7E-12 77.3 5.9 94 97-193 68-177 (234)
158 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.3E-06 2.7E-11 81.5 9.2 96 96-195 296-401 (443)
159 COG0220 Predicted S-adenosylme 98.4 1.3E-06 2.8E-11 73.7 7.7 104 99-202 50-172 (227)
160 PLN02672 methionine S-methyltr 98.4 1.7E-06 3.6E-11 87.4 9.8 98 98-197 119-281 (1082)
161 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 5.6E-06 1.2E-10 71.0 9.6 98 96-193 55-198 (256)
162 COG2521 Predicted archaeal met 98.3 3.3E-06 7.2E-11 70.1 7.4 101 96-197 133-248 (287)
163 PF12147 Methyltransf_20: Puta 98.2 9.2E-06 2E-10 69.9 10.0 98 97-194 135-249 (311)
164 PRK03522 rumB 23S rRNA methylu 98.2 5.8E-06 1.3E-10 73.7 7.9 93 97-195 173-275 (315)
165 TIGR00478 tly hemolysin TlyA f 98.2 1.4E-05 2.9E-10 67.7 9.5 100 86-194 62-171 (228)
166 KOG1661 Protein-L-isoaspartate 98.2 4.3E-06 9.4E-11 68.4 6.0 105 82-195 67-194 (237)
167 COG4627 Uncharacterized protei 98.2 1E-06 2.2E-11 68.5 2.2 54 149-202 39-94 (185)
168 PRK10909 rsmD 16S rRNA m(2)G96 98.2 7.4E-06 1.6E-10 68.0 7.5 111 82-196 39-161 (199)
169 PF10294 Methyltransf_16: Puta 98.1 7.9E-06 1.7E-10 66.4 7.0 102 95-197 43-159 (173)
170 PF08704 GCD14: tRNA methyltra 98.1 1.2E-05 2.5E-10 68.8 7.2 98 94-197 37-149 (247)
171 PF07942 N2227: N2227-like pro 98.1 1.8E-05 4E-10 68.2 8.3 109 83-191 36-199 (270)
172 COG2263 Predicted RNA methylas 98.0 1.8E-05 3.9E-10 63.9 7.5 79 97-183 45-136 (198)
173 PRK01544 bifunctional N5-gluta 98.0 9.1E-06 2E-10 76.9 6.6 106 98-204 348-472 (506)
174 TIGR00479 rumA 23S rRNA (uraci 98.0 1.4E-05 3.1E-10 74.3 7.5 97 96-195 291-397 (431)
175 PRK04148 hypothetical protein; 98.0 9.6E-06 2.1E-10 62.5 5.2 90 97-193 16-108 (134)
176 PRK00274 ksgA 16S ribosomal RN 98.0 9.2E-06 2E-10 70.9 5.5 68 95-165 40-113 (272)
177 TIGR03439 methyl_EasF probable 98.0 0.00011 2.4E-09 65.2 12.2 133 82-214 61-217 (319)
178 COG1092 Predicted SAM-dependen 98.0 1.1E-05 2.3E-10 73.3 5.4 106 91-197 212-339 (393)
179 COG4122 Predicted O-methyltran 97.9 2.2E-05 4.8E-10 65.7 6.3 92 97-193 59-165 (219)
180 PRK14896 ksgA 16S ribosomal RN 97.9 2.2E-05 4.7E-10 68.0 6.4 79 81-166 15-100 (258)
181 TIGR02085 meth_trns_rumB 23S r 97.9 3.8E-05 8.3E-10 70.0 8.1 108 83-195 217-335 (374)
182 TIGR00755 ksgA dimethyladenosi 97.9 7.5E-05 1.6E-09 64.5 9.1 66 96-166 28-103 (253)
183 KOG3420 Predicted RNA methylas 97.9 1.7E-05 3.7E-10 61.1 4.3 66 97-165 48-122 (185)
184 PF05185 PRMT5: PRMT5 arginine 97.9 3.5E-05 7.7E-10 71.6 7.1 90 98-191 187-294 (448)
185 PF01170 UPF0020: Putative RNA 97.9 2.7E-05 5.7E-10 63.6 5.6 99 95-197 26-153 (179)
186 PLN02823 spermine synthase 97.9 8.4E-05 1.8E-09 66.6 9.0 97 96-194 102-220 (336)
187 KOG3178 Hydroxyindole-O-methyl 97.8 8.3E-05 1.8E-09 65.7 8.1 89 99-193 179-274 (342)
188 PF04672 Methyltransf_19: S-ad 97.8 0.00017 3.7E-09 62.0 9.6 95 99-195 70-191 (267)
189 PF01596 Methyltransf_3: O-met 97.8 5.5E-05 1.2E-09 63.0 6.3 94 97-193 45-154 (205)
190 KOG2352 Predicted spermine/spe 97.8 0.00011 2.4E-09 67.6 8.6 99 91-192 41-159 (482)
191 PLN02476 O-methyltransferase 97.8 5.2E-05 1.1E-09 65.9 6.2 92 97-193 118-227 (278)
192 KOG3987 Uncharacterized conser 97.8 9.9E-06 2.2E-10 66.1 1.3 93 98-194 113-207 (288)
193 COG0293 FtsJ 23S rRNA methylas 97.7 0.00012 2.6E-09 60.4 7.4 101 94-197 42-162 (205)
194 PRK11727 23S rRNA mA1618 methy 97.7 4.9E-05 1.1E-09 67.5 4.9 68 97-164 114-196 (321)
195 PRK00536 speE spermidine synth 97.6 0.00026 5.6E-09 61.1 8.1 98 95-197 70-174 (262)
196 KOG3191 Predicted N6-DNA-methy 97.6 0.00051 1.1E-08 55.2 8.8 100 98-201 44-175 (209)
197 PF09243 Rsm22: Mitochondrial 97.6 0.00042 9.2E-09 60.5 9.2 95 97-196 33-141 (274)
198 PTZ00338 dimethyladenosine tra 97.6 0.00015 3.3E-09 63.8 6.0 66 95-165 34-109 (294)
199 PF02475 Met_10: Met-10+ like- 97.6 0.00039 8.5E-09 57.6 8.0 96 88-191 92-199 (200)
200 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00019 4.2E-09 63.7 6.3 99 97-197 46-186 (311)
201 TIGR00095 RNA methyltransferas 97.5 0.00045 9.8E-09 56.9 7.8 110 83-196 36-161 (189)
202 PRK04338 N(2),N(2)-dimethylgua 97.5 0.0004 8.6E-09 63.4 8.2 90 98-194 58-158 (382)
203 PF01728 FtsJ: FtsJ-like methy 97.5 0.00013 2.7E-09 59.6 4.5 96 98-196 24-141 (181)
204 PF02527 GidB: rRNA small subu 97.5 0.0005 1.1E-08 56.3 8.0 91 95-193 45-147 (184)
205 PRK11933 yebU rRNA (cytosine-C 97.5 0.00045 9.8E-09 64.6 8.5 100 95-195 111-243 (470)
206 PF10672 Methyltrans_SAM: S-ad 97.5 4.3E-05 9.4E-10 66.7 1.5 100 96-196 122-240 (286)
207 PF01564 Spermine_synth: Sperm 97.5 0.00042 9.2E-09 59.5 7.3 102 94-197 73-194 (246)
208 COG0421 SpeE Spermidine syntha 97.4 0.00093 2E-08 58.3 8.4 94 99-196 78-192 (282)
209 KOG1500 Protein arginine N-met 97.4 0.00056 1.2E-08 60.0 6.9 92 97-194 177-282 (517)
210 PLN02589 caffeoyl-CoA O-methyl 97.3 0.00074 1.6E-08 57.9 7.4 92 97-193 79-189 (247)
211 PF01269 Fibrillarin: Fibrilla 97.3 0.0012 2.6E-08 55.0 8.0 100 94-195 70-179 (229)
212 KOG3201 Uncharacterized conser 97.3 6.6E-05 1.4E-09 59.0 0.4 100 97-197 29-143 (201)
213 TIGR02987 met_A_Alw26 type II 97.2 0.0014 3.1E-08 62.5 9.0 39 97-135 31-80 (524)
214 COG3963 Phospholipid N-methylt 97.2 0.0031 6.6E-08 50.1 9.1 105 88-192 37-154 (194)
215 KOG1709 Guanidinoacetate methy 97.2 0.0014 3.1E-08 54.1 7.4 97 96-192 100-204 (271)
216 PF08123 DOT1: Histone methyla 97.2 0.00021 4.5E-09 59.6 2.7 96 95-191 40-155 (205)
217 TIGR02143 trmA_only tRNA (urac 97.2 0.00047 1E-08 62.4 5.1 51 85-135 184-236 (353)
218 PRK05031 tRNA (uracil-5-)-meth 97.2 0.00059 1.3E-08 62.0 5.5 108 83-195 191-321 (362)
219 PF03602 Cons_hypoth95: Conser 97.2 0.00014 3.1E-09 59.5 1.4 114 82-197 27-156 (183)
220 COG1889 NOP1 Fibrillarin-like 97.2 0.0029 6.3E-08 51.8 8.4 98 95-195 74-181 (231)
221 COG0144 Sun tRNA and rRNA cyto 97.1 0.0071 1.5E-07 54.8 11.6 100 96-195 155-289 (355)
222 PF07091 FmrO: Ribosomal RNA m 97.1 0.0016 3.4E-08 55.4 6.6 109 85-199 93-213 (251)
223 PF03269 DUF268: Caenorhabditi 97.1 0.00029 6.2E-09 55.5 2.0 97 98-196 2-113 (177)
224 KOG1663 O-methyltransferase [S 96.9 0.0057 1.2E-07 51.2 8.5 94 97-193 73-182 (237)
225 KOG2798 Putative trehalase [Ca 96.8 0.004 8.6E-08 54.3 6.8 112 82-193 129-295 (369)
226 PF03059 NAS: Nicotianamine sy 96.7 0.0035 7.6E-08 54.4 6.0 94 99-195 122-231 (276)
227 PRK00050 16S rRNA m(4)C1402 me 96.7 0.0026 5.5E-08 56.0 5.2 72 96-167 18-100 (296)
228 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.0058 1.3E-07 60.4 6.7 78 120-200 258-353 (702)
229 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.0055 1.2E-07 55.8 6.1 90 99-194 46-147 (374)
230 PF06859 Bin3: Bicoid-interact 96.5 0.0014 3E-08 48.5 1.7 39 157-195 1-45 (110)
231 PF03141 Methyltransf_29: Puta 96.5 0.0053 1.2E-07 57.0 5.9 91 100-194 368-467 (506)
232 PLN02668 indole-3-acetate carb 96.5 0.034 7.3E-07 50.7 10.9 47 151-197 156-240 (386)
233 COG0357 GidB Predicted S-adeno 96.5 0.015 3.1E-07 48.7 7.8 88 98-192 68-166 (215)
234 COG0030 KsgA Dimethyladenosine 96.4 0.0066 1.4E-07 52.2 5.5 67 95-164 28-102 (259)
235 PRK11760 putative 23S rRNA C24 96.4 0.021 4.7E-07 50.9 8.6 88 96-193 210-304 (357)
236 KOG0820 Ribosomal RNA adenine 96.3 0.0055 1.2E-07 52.5 4.3 66 94-164 55-130 (315)
237 COG2520 Predicted methyltransf 96.2 0.015 3.3E-07 52.0 7.0 98 89-193 180-288 (341)
238 KOG4589 Cell division protein 96.2 0.03 6.6E-07 45.4 7.9 96 94-194 66-184 (232)
239 COG0742 N6-adenine-specific me 96.1 0.016 3.5E-07 47.2 6.1 112 83-197 29-157 (187)
240 COG3897 Predicted methyltransf 96.1 0.01 2.3E-07 48.4 4.7 102 97-201 79-186 (218)
241 COG2265 TrmA SAM-dependent met 96.1 0.035 7.6E-07 51.5 8.8 112 83-207 277-408 (432)
242 PF04989 CmcI: Cephalosporin h 95.9 0.047 1E-06 45.3 7.8 133 97-232 32-186 (206)
243 COG1064 AdhP Zn-dependent alco 95.8 0.028 6.2E-07 50.2 6.8 93 93-193 162-258 (339)
244 PF05971 Methyltransf_10: Prot 95.6 0.012 2.5E-07 51.7 3.5 69 98-166 103-186 (299)
245 COG1189 Predicted rRNA methyla 95.5 0.044 9.6E-07 46.2 6.4 105 86-194 66-178 (245)
246 PF03492 Methyltransf_7: SAM d 95.5 0.059 1.3E-06 48.4 7.6 48 150-197 100-186 (334)
247 KOG3115 Methyltransferase-like 95.3 0.046 9.9E-07 45.0 5.7 33 97-129 60-95 (249)
248 PF06962 rRNA_methylase: Putat 95.0 0.029 6.4E-07 43.6 3.7 70 120-193 1-91 (140)
249 KOG1596 Fibrillarin and relate 94.6 0.17 3.7E-06 42.8 7.5 100 94-196 153-263 (317)
250 KOG2915 tRNA(1-methyladenosine 94.6 0.18 3.9E-06 43.5 7.7 93 95-193 103-208 (314)
251 COG4076 Predicted RNA methylas 94.6 0.11 2.5E-06 42.2 6.2 87 99-191 34-132 (252)
252 PF05958 tRNA_U5-meth_tr: tRNA 94.5 0.16 3.4E-06 46.1 7.7 54 82-135 180-235 (352)
253 COG4262 Predicted spermidine s 94.5 0.15 3.3E-06 45.7 7.2 95 95-197 287-410 (508)
254 PF09445 Methyltransf_15: RNA 94.4 0.016 3.4E-07 46.4 0.8 64 100-164 2-76 (163)
255 KOG2920 Predicted methyltransf 94.1 0.066 1.4E-06 46.3 4.0 97 96-193 115-233 (282)
256 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.14 3E-06 45.0 6.1 98 95-195 83-220 (283)
257 TIGR01444 fkbM_fam methyltrans 94.0 0.045 9.8E-07 42.4 2.7 35 100-134 1-38 (143)
258 PF04816 DUF633: Family of unk 93.8 0.069 1.5E-06 44.5 3.6 87 101-193 1-100 (205)
259 COG4798 Predicted methyltransf 93.8 0.25 5.4E-06 40.5 6.6 24 171-194 143-166 (238)
260 COG0116 Predicted N6-adenine-s 93.8 0.15 3.4E-06 46.1 6.0 73 120-195 256-345 (381)
261 KOG1122 tRNA and rRNA cytosine 93.6 0.16 3.4E-06 46.3 5.7 98 96-195 240-372 (460)
262 PRK09424 pntA NAD(P) transhydr 93.6 0.35 7.6E-06 45.9 8.3 97 97-193 164-284 (509)
263 cd08283 FDH_like_1 Glutathione 93.6 0.39 8.4E-06 43.9 8.5 100 94-193 181-305 (386)
264 PF13679 Methyltransf_32: Meth 93.4 0.21 4.6E-06 38.9 5.5 39 96-134 24-69 (141)
265 PF13578 Methyltransf_24: Meth 93.2 0.026 5.5E-07 41.5 0.1 89 102-193 1-104 (106)
266 PF00398 RrnaAD: Ribosomal RNA 93.1 1 2.2E-05 38.9 10.0 98 81-186 16-123 (262)
267 KOG2793 Putative N2,N2-dimethy 93.0 0.75 1.6E-05 39.4 8.7 101 98-198 87-203 (248)
268 KOG0024 Sorbitol dehydrogenase 92.9 0.56 1.2E-05 41.5 7.9 95 94-194 166-273 (354)
269 PRK09880 L-idonate 5-dehydroge 92.8 0.67 1.5E-05 41.5 8.7 92 96-193 168-265 (343)
270 COG0286 HsdM Type I restrictio 92.6 0.92 2E-05 43.0 9.5 110 87-197 174-329 (489)
271 KOG2730 Methylase [General fun 92.4 0.21 4.7E-06 41.7 4.3 68 97-164 94-172 (263)
272 KOG2539 Mitochondrial/chloropl 92.3 0.4 8.6E-06 44.4 6.4 99 98-196 201-317 (491)
273 COG1063 Tdh Threonine dehydrog 92.1 0.62 1.3E-05 42.1 7.5 91 97-193 168-268 (350)
274 COG5459 Predicted rRNA methyla 92.0 0.3 6.4E-06 43.7 5.0 99 98-197 114-228 (484)
275 PF10237 N6-adenineMlase: Prob 91.3 2.7 5.8E-05 33.6 9.5 114 79-196 7-125 (162)
276 COG3129 Predicted SAM-dependen 90.6 0.84 1.8E-05 38.5 6.1 87 82-168 59-164 (292)
277 KOG2187 tRNA uracil-5-methyltr 90.4 0.33 7.2E-06 45.4 4.0 51 86-136 370-423 (534)
278 cd08254 hydroxyacyl_CoA_DH 6-h 90.3 1.3 2.9E-05 39.1 7.7 93 95-193 163-262 (338)
279 PHA01634 hypothetical protein 90.2 0.69 1.5E-05 35.3 4.8 68 97-164 28-99 (156)
280 COG1255 Uncharacterized protei 89.8 1.5 3.3E-05 32.7 6.2 86 97-193 13-101 (129)
281 PRK13699 putative methylase; P 89.5 0.38 8.1E-06 40.8 3.3 43 152-194 15-72 (227)
282 PRK11524 putative methyltransf 89.4 0.36 7.8E-06 42.3 3.3 43 153-195 23-81 (284)
283 TIGR02822 adh_fam_2 zinc-bindi 88.8 3.5 7.6E-05 36.7 9.3 89 94-193 162-253 (329)
284 cd08237 ribitol-5-phosphate_DH 88.7 3.1 6.8E-05 37.2 9.0 90 95-193 161-255 (341)
285 COG2384 Predicted SAM-dependen 88.5 2.5 5.3E-05 35.5 7.4 98 93-193 12-119 (226)
286 PF01555 N6_N4_Mtase: DNA meth 87.7 1 2.2E-05 37.3 4.9 50 85-134 179-229 (231)
287 cd00401 AdoHcyase S-adenosyl-L 87.7 1.7 3.6E-05 40.3 6.5 85 96-193 200-288 (413)
288 TIGR01202 bchC 2-desacetyl-2-h 86.3 4.3 9.3E-05 35.8 8.3 84 96-193 143-230 (308)
289 TIGR03451 mycoS_dep_FDH mycoth 85.6 4.5 9.6E-05 36.4 8.2 94 94-193 173-275 (358)
290 TIGR00561 pntA NAD(P) transhyd 84.9 1.6 3.5E-05 41.5 5.0 95 97-191 163-281 (511)
291 TIGR00027 mthyl_TIGR00027 meth 84.8 11 0.00025 32.5 10.0 99 99-197 83-200 (260)
292 cd05188 MDR Medium chain reduc 84.8 3.7 8.1E-05 34.6 7.0 91 96-193 133-231 (271)
293 PRK11524 putative methyltransf 84.3 2.2 4.8E-05 37.3 5.4 51 86-136 197-248 (284)
294 cd08281 liver_ADH_like1 Zinc-d 83.7 4.7 0.0001 36.5 7.5 94 94-193 188-289 (371)
295 PF11899 DUF3419: Protein of u 83.6 1.6 3.4E-05 40.0 4.2 41 153-193 291-333 (380)
296 PF07757 AdoMet_MTase: Predict 83.3 1.6 3.5E-05 32.3 3.4 31 97-128 58-90 (112)
297 cd08245 CAD Cinnamyl alcohol d 83.2 9.1 0.0002 33.7 9.0 93 94-193 159-255 (330)
298 PF03686 UPF0146: Uncharacteri 83.0 2.4 5.1E-05 32.3 4.3 89 97-195 13-103 (127)
299 PF00107 ADH_zinc_N: Zinc-bind 82.3 2.9 6.3E-05 31.4 4.8 70 118-193 14-88 (130)
300 KOG2198 tRNA cytosine-5-methyl 82.2 7.1 0.00015 35.3 7.7 104 92-195 150-297 (375)
301 TIGR02825 B4_12hDH leukotriene 81.6 8.8 0.00019 33.8 8.3 93 94-193 135-236 (325)
302 cd08239 THR_DH_like L-threonin 81.3 13 0.00028 32.9 9.3 93 95-193 161-261 (339)
303 PRK13699 putative methylase; P 80.8 3.8 8.3E-05 34.6 5.4 49 87-135 153-202 (227)
304 TIGR03366 HpnZ_proposed putati 80.8 6.2 0.00013 34.1 6.9 91 96-193 119-217 (280)
305 COG4301 Uncharacterized conser 79.9 39 0.00084 29.2 11.2 98 97-195 78-194 (321)
306 PLN02740 Alcohol dehydrogenase 79.8 9.9 0.00021 34.6 8.2 94 94-193 195-299 (381)
307 cd08232 idonate-5-DH L-idonate 79.8 8.4 0.00018 34.1 7.6 91 97-193 165-261 (339)
308 KOG2671 Putative RNA methylase 79.3 3.8 8.3E-05 36.7 4.9 81 93-184 204-303 (421)
309 cd08234 threonine_DH_like L-th 79.3 8.2 0.00018 34.0 7.3 93 94-193 156-256 (334)
310 cd08255 2-desacetyl-2-hydroxye 79.0 13 0.00029 31.7 8.4 90 94-193 94-189 (277)
311 cd08230 glucose_DH Glucose deh 78.2 9.8 0.00021 34.1 7.6 89 96-193 171-268 (355)
312 PLN03154 putative allyl alcoho 78.1 11 0.00023 33.9 7.8 93 94-193 155-257 (348)
313 cd08285 NADP_ADH NADP(H)-depen 77.1 14 0.0003 33.0 8.2 93 94-192 163-264 (351)
314 cd08294 leukotriene_B4_DH_like 76.2 10 0.00022 33.3 7.0 93 94-193 140-240 (329)
315 PLN02827 Alcohol dehydrogenase 76.1 10 0.00022 34.5 7.1 93 94-192 190-293 (378)
316 COG1062 AdhC Zn-dependent alco 76.1 10 0.00022 34.1 6.6 93 95-193 183-284 (366)
317 cd05278 FDH_like Formaldehyde 75.8 8.9 0.00019 34.0 6.6 94 94-193 164-266 (347)
318 PF02005 TRM: N2,N2-dimethylgu 75.3 2.2 4.9E-05 39.0 2.5 95 96-196 48-156 (377)
319 PRK05476 S-adenosyl-L-homocyst 74.7 8 0.00017 36.0 6.0 84 97-193 211-298 (425)
320 TIGR00936 ahcY adenosylhomocys 74.6 8.9 0.00019 35.5 6.2 85 96-193 193-281 (406)
321 PF01861 DUF43: Protein of unk 74.4 55 0.0012 28.0 10.4 97 97-198 44-153 (243)
322 COG0287 TyrA Prephenate dehydr 74.1 8.5 0.00018 33.7 5.7 87 99-191 4-95 (279)
323 PRK10309 galactitol-1-phosphat 73.0 20 0.00043 31.9 8.1 93 95-193 158-259 (347)
324 TIGR03201 dearomat_had 6-hydro 72.9 29 0.00063 31.0 9.1 93 94-193 163-271 (349)
325 cd00315 Cyt_C5_DNA_methylase C 72.8 5 0.00011 35.0 4.0 63 100-165 2-70 (275)
326 cd05213 NAD_bind_Glutamyl_tRNA 72.8 6.6 0.00014 34.9 4.8 98 97-201 177-279 (311)
327 KOG2352 Predicted spermine/spe 72.0 7.2 0.00016 36.6 4.9 104 100-204 300-428 (482)
328 KOG0822 Protein kinase inhibit 71.9 14 0.00031 35.2 6.8 89 100-191 370-475 (649)
329 KOG4058 Uncharacterized conser 71.6 5.5 0.00012 31.3 3.5 94 97-198 72-177 (199)
330 cd08242 MDR_like Medium chain 71.6 20 0.00043 31.4 7.6 89 94-192 152-243 (319)
331 KOG1562 Spermidine synthase [A 70.8 10 0.00023 33.3 5.3 98 95-193 119-235 (337)
332 COG1867 TRM1 N2,N2-dimethylgua 70.4 7.9 0.00017 35.1 4.7 91 98-194 53-154 (380)
333 PF08484 Methyltransf_14: C-me 70.3 11 0.00025 29.9 5.2 104 83-195 53-160 (160)
334 PF01555 N6_N4_Mtase: DNA meth 70.1 2.1 4.4E-05 35.5 1.0 26 172-197 34-59 (231)
335 cd08295 double_bond_reductase_ 70.0 22 0.00049 31.5 7.7 92 94-192 148-249 (338)
336 cd08300 alcohol_DH_class_III c 69.7 26 0.00056 31.6 8.1 94 94-193 183-287 (368)
337 PF06016 Reovirus_L2: Reovirus 68.9 8.7 0.00019 40.2 5.1 95 98-194 823-927 (1289)
338 COG0686 Ald Alanine dehydrogen 67.9 9.4 0.0002 33.9 4.5 92 99-191 169-265 (371)
339 PF01795 Methyltransf_5: MraW 67.5 17 0.00037 32.3 6.2 41 96-136 19-62 (310)
340 TIGR02818 adh_III_F_hyde S-(hy 67.0 28 0.0006 31.5 7.7 94 94-193 182-286 (368)
341 TIGR02819 fdhA_non_GSH formald 66.6 76 0.0016 29.1 10.6 99 94-193 182-298 (393)
342 PLN02586 probable cinnamyl alc 66.3 18 0.00039 32.7 6.3 93 95-193 181-277 (360)
343 cd08261 Zn_ADH7 Alcohol dehydr 66.0 30 0.00065 30.5 7.7 94 94-193 156-257 (337)
344 COG3510 CmcI Cephalosporin hyd 65.8 20 0.00043 29.6 5.6 99 97-195 69-181 (237)
345 cd08298 CAD2 Cinnamyl alcohol 65.7 56 0.0012 28.6 9.3 89 94-193 164-255 (329)
346 PRK05708 2-dehydropantoate 2-r 65.4 39 0.00085 29.8 8.2 92 99-193 3-103 (305)
347 TIGR00006 S-adenosyl-methyltra 65.2 9.6 0.00021 33.8 4.2 40 96-135 19-61 (305)
348 COG0677 WecC UDP-N-acetyl-D-ma 65.1 35 0.00075 31.5 7.6 95 99-193 10-127 (436)
349 PRK07417 arogenate dehydrogena 64.8 15 0.00033 31.9 5.4 82 100-189 2-86 (279)
350 PRK05225 ketol-acid reductoiso 64.6 7 0.00015 36.6 3.3 87 97-193 35-130 (487)
351 cd08241 QOR1 Quinone oxidoredu 64.6 35 0.00076 29.3 7.7 92 94-192 136-236 (323)
352 PLN02494 adenosylhomocysteinas 64.3 10 0.00023 35.7 4.4 86 96-193 252-340 (477)
353 cd08231 MDR_TM0436_like Hypoth 63.9 35 0.00077 30.5 7.8 89 97-193 177-279 (361)
354 cd08265 Zn_ADH3 Alcohol dehydr 63.7 37 0.0008 30.8 8.0 94 94-193 200-306 (384)
355 PF11599 AviRa: RRNA methyltra 63.4 5.1 0.00011 33.6 1.9 54 82-135 34-94 (246)
356 PF03514 GRAS: GRAS domain fam 63.2 29 0.00062 31.8 7.0 97 97-193 110-243 (374)
357 cd05285 sorbitol_DH Sorbitol d 63.1 60 0.0013 28.7 9.1 93 93-193 158-264 (343)
358 cd08277 liver_alcohol_DH_like 63.0 39 0.00085 30.4 7.9 94 94-193 181-285 (365)
359 cd08293 PTGR2 Prostaglandin re 63.0 26 0.00057 31.0 6.8 90 95-192 150-252 (345)
360 PTZ00075 Adenosylhomocysteinas 62.4 14 0.00031 34.8 4.9 84 97-193 253-340 (476)
361 PRK08306 dipicolinate synthase 62.3 19 0.0004 31.8 5.5 85 97-191 151-238 (296)
362 PF02254 TrkA_N: TrkA-N domain 62.1 30 0.00064 25.2 5.9 94 101-199 1-101 (116)
363 PF11312 DUF3115: Protein of u 61.9 3.1 6.6E-05 36.8 0.4 38 157-194 200-242 (315)
364 PF02636 Methyltransf_28: Puta 61.9 13 0.00029 31.7 4.4 69 99-171 20-109 (252)
365 TIGR00518 alaDH alanine dehydr 61.8 8.6 0.00019 35.1 3.4 94 98-191 167-264 (370)
366 COG0604 Qor NADPH:quinone redu 61.6 42 0.00091 30.0 7.7 92 94-193 139-240 (326)
367 PRK07502 cyclohexadienyl dehyd 61.5 19 0.00042 31.7 5.5 86 99-191 7-97 (307)
368 PLN02178 cinnamyl-alcohol dehy 61.4 23 0.0005 32.2 6.1 92 96-193 177-272 (375)
369 COG3315 O-Methyltransferase in 61.1 85 0.0018 27.7 9.4 159 87-249 81-263 (297)
370 cd08301 alcohol_DH_plants Plan 60.6 41 0.0009 30.2 7.6 94 94-193 184-288 (369)
371 cd08278 benzyl_alcohol_DH Benz 60.5 30 0.00065 31.1 6.7 93 95-193 184-284 (365)
372 cd08233 butanediol_DH_like (2R 58.7 57 0.0012 29.0 8.2 94 94-193 169-271 (351)
373 TIGR00872 gnd_rel 6-phosphoglu 58.5 15 0.00032 32.3 4.2 88 100-194 2-92 (298)
374 COG2933 Predicted SAM-dependen 58.4 49 0.0011 28.8 7.0 85 94-187 208-296 (358)
375 TIGR00692 tdh L-threonine 3-de 58.3 51 0.0011 29.1 7.7 92 95-193 159-260 (340)
376 KOG2651 rRNA adenine N-6-methy 58.2 17 0.00038 33.2 4.5 36 98-133 154-191 (476)
377 PRK10669 putative cation:proto 57.6 39 0.00085 32.6 7.3 94 99-197 418-518 (558)
378 PRK03659 glutathione-regulated 56.9 43 0.00094 32.7 7.5 96 99-199 401-503 (601)
379 PRK01747 mnmC bifunctional tRN 56.4 11 0.00024 37.2 3.4 37 156-192 165-204 (662)
380 cd08236 sugar_DH NAD(P)-depend 55.7 53 0.0012 28.9 7.4 93 94-193 156-257 (343)
381 cd08286 FDH_like_ADH2 formalde 54.9 70 0.0015 28.2 8.1 92 95-193 164-265 (345)
382 cd08263 Zn_ADH10 Alcohol dehyd 54.9 49 0.0011 29.7 7.1 92 96-193 186-286 (367)
383 cd08266 Zn_ADH_like1 Alcohol d 54.4 67 0.0015 27.9 7.8 92 95-193 164-264 (342)
384 PF06557 DUF1122: Protein of u 54.3 26 0.00056 27.9 4.4 23 174-196 66-88 (170)
385 PRK10083 putative oxidoreducta 54.2 47 0.001 29.2 6.8 94 94-193 157-258 (339)
386 KOG1099 SAM-dependent methyltr 54.2 12 0.00027 31.7 2.7 94 99-195 43-164 (294)
387 PRK11064 wecC UDP-N-acetyl-D-m 53.6 90 0.002 28.9 8.7 95 99-193 4-118 (415)
388 COG1748 LYS9 Saccharopine dehy 53.6 11 0.00024 34.5 2.6 67 99-165 2-76 (389)
389 PRK05786 fabG 3-ketoacyl-(acyl 53.1 50 0.0011 27.2 6.5 97 97-193 4-134 (238)
390 KOG0022 Alcohol dehydrogenase, 52.9 17 0.00036 32.5 3.4 92 95-192 190-292 (375)
391 PF04445 SAM_MT: Putative SAM- 52.8 4.8 0.0001 34.2 0.1 67 99-168 77-162 (234)
392 PRK08324 short chain dehydroge 52.2 25 0.00055 34.9 5.1 97 97-193 421-556 (681)
393 KOG1098 Putative SAM-dependent 52.0 7.8 0.00017 37.5 1.4 98 93-193 40-157 (780)
394 PRK03562 glutathione-regulated 51.9 59 0.0013 32.0 7.5 95 98-197 400-501 (621)
395 TIGR00497 hsdM type I restrict 51.9 47 0.001 31.6 6.7 99 97-197 217-358 (501)
396 cd05286 QOR2 Quinone oxidoredu 51.8 75 0.0016 27.1 7.6 93 94-193 133-234 (320)
397 COG4017 Uncharacterized protei 51.7 1.4E+02 0.003 24.8 9.1 88 96-197 43-132 (254)
398 COG1565 Uncharacterized conser 51.4 33 0.00071 31.2 5.1 37 97-133 77-124 (370)
399 cd05279 Zn_ADH1 Liver alcohol 51.4 69 0.0015 28.8 7.5 94 94-193 180-284 (365)
400 PF02153 PDH: Prephenate dehyd 51.0 11 0.00023 32.5 2.0 65 117-191 10-76 (258)
401 COG0569 TrkA K+ transport syst 50.5 35 0.00075 28.7 5.0 65 99-165 1-74 (225)
402 PLN02702 L-idonate 5-dehydroge 50.3 90 0.0019 27.9 8.1 93 95-193 179-284 (364)
403 cd08279 Zn_ADH_class_III Class 50.2 85 0.0018 28.1 7.9 94 94-193 179-281 (363)
404 KOG2078 tRNA modification enzy 49.9 16 0.00036 33.8 3.0 47 87-133 239-286 (495)
405 PF02826 2-Hacid_dh_C: D-isome 49.9 13 0.00029 29.9 2.3 84 97-192 35-125 (178)
406 cd08246 crotonyl_coA_red croto 49.9 1.1E+02 0.0023 27.8 8.6 92 94-193 190-314 (393)
407 cd08238 sorbose_phosphate_red 49.9 50 0.0011 30.4 6.4 93 95-193 173-287 (410)
408 KOG1501 Arginine N-methyltrans 49.7 11 0.00024 35.0 1.9 37 99-135 68-106 (636)
409 PRK13403 ketol-acid reductoiso 49.5 33 0.00072 30.8 4.8 87 97-193 15-105 (335)
410 PF04072 LCM: Leucine carboxyl 49.4 27 0.00059 28.2 4.1 75 97-171 77-171 (183)
411 PF11899 DUF3419: Protein of u 49.0 29 0.00063 31.8 4.6 37 94-132 32-71 (380)
412 PF06460 NSP13: Coronavirus NS 48.9 80 0.0017 27.4 6.8 97 95-199 59-174 (299)
413 cd08240 6_hydroxyhexanoate_dh_ 48.9 86 0.0019 27.8 7.7 90 97-192 175-272 (350)
414 PRK15057 UDP-glucose 6-dehydro 48.5 96 0.0021 28.5 7.9 35 100-134 2-38 (388)
415 PRK06522 2-dehydropantoate 2-r 48.0 52 0.0011 28.6 6.0 89 100-192 2-98 (304)
416 cd05283 CAD1 Cinnamyl alcohol 47.8 1.3E+02 0.0027 26.6 8.5 92 95-193 167-262 (337)
417 COG0275 Predicted S-adenosylme 47.6 16 0.00034 32.3 2.5 27 170-196 220-246 (314)
418 PRK09260 3-hydroxybutyryl-CoA 47.5 21 0.00045 31.2 3.3 35 100-134 3-40 (288)
419 PTZ00354 alcohol dehydrogenase 47.5 1.1E+02 0.0023 26.6 8.0 92 94-192 137-238 (334)
420 TIGR00006 S-adenosyl-methyltra 46.9 22 0.00049 31.5 3.4 26 171-196 217-242 (305)
421 cd01842 SGNH_hydrolase_like_5 46.8 46 0.001 27.1 4.9 42 153-194 46-99 (183)
422 PRK00045 hemA glutamyl-tRNA re 46.8 35 0.00077 31.7 4.9 96 97-196 181-281 (423)
423 PRK09422 ethanol-active dehydr 46.5 1.9E+02 0.004 25.3 9.4 92 94-193 159-260 (338)
424 PRK07819 3-hydroxybutyryl-CoA 46.2 47 0.001 29.1 5.3 92 100-193 7-120 (286)
425 PRK06035 3-hydroxyacyl-CoA deh 45.9 28 0.0006 30.4 3.9 34 100-133 5-41 (291)
426 KOG1253 tRNA methyltransferase 45.8 10 0.00022 35.7 1.1 96 97-196 109-218 (525)
427 PRK08265 short chain dehydroge 45.8 50 0.0011 28.0 5.4 71 97-167 5-90 (261)
428 PF07101 DUF1363: Protein of u 45.3 8.3 0.00018 27.6 0.4 16 101-116 6-21 (124)
429 PRK12480 D-lactate dehydrogena 45.2 49 0.0011 29.6 5.4 86 97-193 145-233 (330)
430 cd08274 MDR9 Medium chain dehy 45.1 2.1E+02 0.0046 25.0 9.7 91 94-192 174-271 (350)
431 KOG3924 Putative protein methy 45.0 30 0.00066 31.7 3.9 110 83-193 177-307 (419)
432 PF10354 DUF2431: Domain of un 44.9 41 0.00089 26.9 4.4 43 153-197 71-128 (166)
433 PLN02256 arogenate dehydrogena 43.8 52 0.0011 29.2 5.3 90 97-196 35-128 (304)
434 cd08282 PFDH_like Pseudomonas 43.8 2.4E+02 0.0053 25.3 10.0 99 94-193 173-284 (375)
435 cd05281 TDH Threonine dehydrog 43.5 1.1E+02 0.0025 26.9 7.6 92 95-193 161-261 (341)
436 PF03446 NAD_binding_2: NAD bi 43.2 12 0.00025 29.7 1.0 84 100-191 3-91 (163)
437 cd08289 MDR_yhfp_like Yhfp put 43.1 88 0.0019 27.2 6.7 90 97-193 146-242 (326)
438 PRK12921 2-dehydropantoate 2-r 43.1 1E+02 0.0022 26.8 7.0 92 100-197 2-104 (305)
439 cd08296 CAD_like Cinnamyl alco 43.1 1.8E+02 0.0039 25.5 8.8 93 94-193 160-258 (333)
440 PF14740 DUF4471: Domain of un 43.0 25 0.00055 30.9 3.1 35 156-195 221-255 (289)
441 cd05289 MDR_like_2 alcohol deh 43.0 1.6E+02 0.0034 25.0 8.2 90 95-193 142-237 (309)
442 PRK08293 3-hydroxybutyryl-CoA 43.0 18 0.00038 31.6 2.2 35 100-134 5-42 (287)
443 PRK09496 trkA potassium transp 42.7 44 0.00095 31.0 4.9 81 85-165 218-305 (453)
444 PRK07806 short chain dehydroge 42.7 1.3E+02 0.0027 25.0 7.4 97 97-193 5-133 (248)
445 cd08291 ETR_like_1 2-enoyl thi 42.3 1.2E+02 0.0025 26.6 7.4 69 117-193 167-241 (324)
446 PRK00050 16S rRNA m(4)C1402 me 41.9 30 0.00065 30.6 3.4 26 171-196 213-238 (296)
447 cd08270 MDR4 Medium chain dehy 41.6 2.2E+02 0.0048 24.2 9.5 85 97-193 132-221 (305)
448 PRK09599 6-phosphogluconate de 41.3 49 0.0011 29.0 4.8 35 100-134 2-39 (301)
449 PRK00094 gpsA NAD(P)H-dependen 41.3 54 0.0012 28.8 5.1 89 100-191 3-102 (325)
450 cd08256 Zn_ADH2 Alcohol dehydr 40.3 1.4E+02 0.0031 26.4 7.7 93 95-193 172-273 (350)
451 PRK05396 tdh L-threonine 3-deh 40.1 1.4E+02 0.003 26.3 7.5 92 96-193 162-262 (341)
452 cd05288 PGDH Prostaglandin deh 40.0 1.6E+02 0.0034 25.6 7.8 91 95-192 143-242 (329)
453 COG2910 Putative NADH-flavin r 39.9 54 0.0012 27.0 4.3 86 100-186 2-94 (211)
454 PLN03209 translocon at the inn 39.9 50 0.0011 32.1 4.8 71 97-167 79-169 (576)
455 PLN02688 pyrroline-5-carboxyla 39.7 71 0.0015 27.3 5.4 87 100-196 2-96 (266)
456 cd08268 MDR2 Medium chain dehy 39.7 1.5E+02 0.0033 25.3 7.7 92 95-193 142-242 (328)
457 PF01795 Methyltransf_5: MraW 39.5 22 0.00049 31.6 2.3 25 172-196 219-243 (310)
458 PRK06182 short chain dehydroge 39.2 1.1E+02 0.0024 25.9 6.6 71 98-168 3-85 (273)
459 PF12692 Methyltransf_17: S-ad 39.0 70 0.0015 25.3 4.6 95 97-193 28-133 (160)
460 PRK09496 trkA potassium transp 38.7 95 0.0021 28.8 6.5 94 100-196 2-101 (453)
461 PRK08655 prephenate dehydrogen 38.7 64 0.0014 30.2 5.3 83 100-191 2-89 (437)
462 PRK12490 6-phosphogluconate de 38.0 52 0.0011 28.9 4.4 87 100-191 2-91 (299)
463 PRK07530 3-hydroxybutyryl-CoA 37.5 75 0.0016 27.7 5.3 35 99-133 5-42 (292)
464 cd08243 quinone_oxidoreductase 37.3 1.7E+02 0.0037 25.0 7.6 90 95-193 140-237 (320)
465 PLN03139 formate dehydrogenase 37.0 42 0.0009 30.9 3.6 89 97-193 198-290 (386)
466 cd08287 FDH_like_ADH3 formalde 36.6 2.9E+02 0.0063 24.2 9.4 93 94-193 165-267 (345)
467 PF05050 Methyltransf_21: Meth 36.3 41 0.0009 25.9 3.2 29 103-131 1-36 (167)
468 PF01558 POR: Pyruvate ferredo 36.3 37 0.00081 27.0 2.9 32 156-195 56-87 (173)
469 KOG2013 SMT3/SUMO-activating c 36.2 33 0.00072 32.4 2.8 31 97-127 11-45 (603)
470 COG5379 BtaA S-adenosylmethion 36.1 79 0.0017 28.0 4.9 55 154-208 324-386 (414)
471 PRK10742 putative methyltransf 36.0 62 0.0014 27.8 4.3 37 95-131 84-123 (250)
472 KOG3350 Uncharacterized conser 35.9 2.4E+02 0.0053 23.1 9.1 113 79-194 55-172 (217)
473 cd05284 arabinose_DH_like D-ar 35.9 1.6E+02 0.0035 25.7 7.3 93 95-193 165-265 (340)
474 PRK07066 3-hydroxybutyryl-CoA 35.9 63 0.0014 28.9 4.6 35 99-133 8-45 (321)
475 KOG1209 1-Acyl dihydroxyaceton 35.8 1.3E+02 0.0028 25.6 5.9 69 97-166 6-90 (289)
476 PRK06853 indolepyruvate oxidor 35.7 58 0.0013 26.6 4.0 32 155-194 66-97 (197)
477 PRK06274 indolepyruvate oxidor 35.7 60 0.0013 26.5 4.1 32 155-194 65-96 (197)
478 cd08262 Zn_ADH8 Alcohol dehydr 35.5 3E+02 0.0066 24.0 9.4 94 94-193 158-263 (341)
479 COG5379 BtaA S-adenosylmethion 35.5 36 0.00078 30.1 2.8 39 95-133 61-100 (414)
480 PF02558 ApbA: Ketopantoate re 35.2 35 0.00075 26.2 2.5 91 101-197 1-103 (151)
481 PLN02514 cinnamyl-alcohol dehy 35.0 1.4E+02 0.0029 26.8 6.7 90 96-193 179-274 (357)
482 KOG1227 Putative methyltransfe 34.7 43 0.00094 29.7 3.2 94 95-192 192-293 (351)
483 COG0270 Dcm Site-specific DNA 34.7 89 0.0019 27.9 5.4 95 98-193 3-115 (328)
484 PF03721 UDPG_MGDP_dh_N: UDP-g 34.4 50 0.0011 26.8 3.4 94 100-193 2-119 (185)
485 cd08299 alcohol_DH_class_I_II_ 34.2 2.6E+02 0.0056 25.2 8.4 94 94-193 187-291 (373)
486 PRK08267 short chain dehydroge 34.1 92 0.002 26.1 5.2 68 100-167 3-87 (260)
487 cd08297 CAD3 Cinnamyl alcohol 34.1 2E+02 0.0043 25.2 7.6 93 94-193 162-264 (341)
488 PLN02712 arogenate dehydrogena 33.4 85 0.0019 31.2 5.4 88 97-194 51-142 (667)
489 PRK08220 2,3-dihydroxybenzoate 33.4 1.3E+02 0.0029 24.9 6.1 69 97-167 7-86 (252)
490 TIGR03026 NDP-sugDHase nucleot 33.1 1.8E+02 0.0039 26.8 7.3 34 100-133 2-38 (411)
491 TIGR01035 hemA glutamyl-tRNA r 32.7 72 0.0016 29.6 4.5 95 97-197 179-279 (417)
492 cd08260 Zn_ADH6 Alcohol dehydr 32.4 1.1E+02 0.0024 27.0 5.6 92 95-192 163-262 (345)
493 PRK06130 3-hydroxybutyryl-CoA 32.2 63 0.0014 28.4 4.0 36 99-134 5-43 (311)
494 TIGR01751 crot-CoA-red crotony 31.1 3E+02 0.0064 25.0 8.4 92 95-193 187-309 (398)
495 cd08235 iditol_2_DH_like L-idi 31.0 2.4E+02 0.0052 24.7 7.6 93 94-193 162-264 (343)
496 PLN02545 3-hydroxybutyryl-CoA 30.9 1.1E+02 0.0025 26.5 5.4 35 99-133 5-42 (295)
497 cd05280 MDR_yhdh_yhfp Yhdh and 30.8 2.3E+02 0.0051 24.4 7.4 89 98-193 147-242 (325)
498 KOG1252 Cystathionine beta-syn 30.4 87 0.0019 28.2 4.4 36 97-132 213-253 (362)
499 PF11253 DUF3052: Protein of u 30.2 97 0.0021 23.7 4.0 42 155-197 43-84 (127)
500 PRK06500 short chain dehydroge 29.4 2E+02 0.0043 23.7 6.5 71 97-167 5-90 (249)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.84 E-value=6.1e-21 Score=160.66 Aligned_cols=94 Identities=32% Similarity=0.495 Sum_probs=81.9
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|... +...+.++|+|+|+|+.||+.+++. .+|+++|. ++|||+|++||+|++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeee
Confidence 7899999999998754 3334678999999999999776532 35788888 99999999999999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|++++|.+++|+|++|||||||++++.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 9999999999999999999999998754
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.81 E-value=5.7e-20 Score=156.02 Aligned_cols=150 Identities=24% Similarity=0.384 Sum_probs=71.9
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||+|.... ... +..+|+|+|+|+.|++.+++ +..+.++|. +++|+++++||+|+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVT 121 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEE
Confidence 4478899999999986433 222 46799999999999976642 346778888 89999999999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE-E--cCchhHHHHHHhhhcCCCC------cchhhHHHHHH-hhCCCCc-
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS-F--SNRMFYEKAISAWRDGTAY------GRVQLVVQYFQ-CVEGYTN- 231 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~-~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~gF~~- 231 (282)
|++++++++|+..+++|++|+|||||++++. + |...........|...--+ ......-.|+. +...|..
T Consensus 122 ~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~ 201 (233)
T PF01209_consen 122 CSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP 201 (233)
T ss_dssp EES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred HHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998754 3 2222223232223211100 00000012333 3455664
Q ss_pred hHHhhcCCCCcccccc
Q 023470 232 PEIVRKLPADSAAAQE 247 (282)
Q Consensus 232 ~ei~~~~~~~g~~~~~ 247 (282)
.++.+.+.++||....
T Consensus 202 ~~~~~~l~~~Gf~~v~ 217 (233)
T PF01209_consen 202 EELKELLEEAGFKNVE 217 (233)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 6678888888887544
No 3
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=6.2e-20 Score=152.17 Aligned_cols=169 Identities=18% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||.|...... ..+.+|+|+|+|+++++.++... ++....+ +++....++||+|+|..||+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHHH
Confidence 7899999999877543332 26799999999999998776332 2333333 55555458999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhh------cCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR------DGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADS 242 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g 242 (282)
|++|++.+++++.+.+||||.++++++|+.+-........ .....+ +... .-++..|+...+..++
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gT--H~~~------k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGT--HDYR------KFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcc--hhHH------HhcCHHHHHHhcccCC
Confidence 9999999999999999999999999999866544332221 111111 1111 2356678888888877
Q ss_pred cccccccCchHHHHHHhccCC-CCCCeEEEEEeec
Q 023470 243 AAAQEDKSPISWLMRLLGFLS-GSDPFYAVIAYKN 276 (282)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v~~~k~ 276 (282)
+...+............|+|+ ..+-+|.+.+.|.
T Consensus 208 ~~~~~~~g~~y~p~~~~~~l~~~~~vNy~~~~~~~ 242 (243)
T COG2227 208 LKIIDRKGLTYNPLTNSWKLSNDVSVNYMVHAQRP 242 (243)
T ss_pred ceEEeecceEeccccceEEecCCccceEEEEeecC
Confidence 766665543332223333222 3577888877663
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=3.1e-19 Score=157.91 Aligned_cols=166 Identities=16% Similarity=0.084 Sum_probs=114.0
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||||||+|...... ..+.+|+|+|+|++|++.++. ...+...++ +++++.+++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhhH
Confidence 4568999999988754322 257899999999999976642 234555665 677777889999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH--------HhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI--------SAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
++|+.|+..+++++.++|||||.++++++++....... ..|... ..+. ....++..|+...+
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~--gth~--------~~~f~tp~eL~~lL 277 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK--GTHQ--------WSSFVTPEELSMIL 277 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC--CCcC--------ccCCCCHHHHHHHH
Confidence 99999999999999999999999999998875432111 111100 0000 01246677788888
Q ss_pred CCCccccccccCch--HHHHHHhccCCCCCCeEEEEEeec
Q 023470 239 PADSAAAQEDKSPI--SWLMRLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 239 ~~~g~~~~~~~~~~--~~l~~~~~~~~~~~~~~~v~~~k~ 276 (282)
..+||......... ++..+|.+. ...+-+|++.+.|+
T Consensus 278 ~~aGf~i~~~~G~~~~p~~~~w~~~-~~~~~ny~~~~~k~ 316 (322)
T PLN02396 278 QRASVDVKEMAGFVYNPITGRWLLS-DDISVNYIAYGTKR 316 (322)
T ss_pred HHcCCeEEEEeeeEEcCcCCeEEec-CCCceeehhheecC
Confidence 88888655542211 133344442 34578888887764
No 5
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.76 E-value=4.4e-18 Score=148.37 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=119.0
Q ss_pred ccccCCCCcCCccccccccccccCchhhcccCCCCCcccccccccccc-cchhHHHHHHHHHHhhCC-CCCeEEEeCCcc
Q 023470 31 STLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVTH-VDGGFISTLTNLYRQMLR-PGSEVLDLMSSW 108 (282)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~ 108 (282)
.+|.|.++|.++.+..+|.+.+.......+..+++.+++-+++++... +-....+.+...+.+.++ +..+|||+|||+
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~ 96 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGE 96 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcC
Confidence 569999999999999999999877666666667766666655555322 111233344444554444 447899999999
Q ss_pred cchhhhh---cC---CCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHH
Q 023470 109 VSHLPQE---VS---YKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAE 179 (282)
Q Consensus 109 ~~~~~~~---~~---~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~ 179 (282)
|.+.... .+ ...++|+|+|+.|++.+++ ...+.++|. .++|+++++||+|++.++- ..+++
T Consensus 97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~lp~~~~sfD~I~~~~~~-------~~~~e 166 (272)
T PRK11088 97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HRLPFADQSLDAIIRIYAP-------CKAEE 166 (272)
T ss_pred CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---ccCCCcCCceeEEEEecCC-------CCHHH
Confidence 8754432 22 3479999999999977653 345777887 7889999999999998752 34689
Q ss_pred HHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 180 VFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 180 ~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
++|+|||||++++..+++....+.+.
T Consensus 167 ~~rvLkpgG~li~~~p~~~~l~el~~ 192 (272)
T PRK11088 167 LARVVKPGGIVITVTPGPRHLFELKG 192 (272)
T ss_pred HHhhccCCCEEEEEeCCCcchHHHHH
Confidence 99999999999999888755544443
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.76 E-value=1.6e-18 Score=138.75 Aligned_cols=103 Identities=33% Similarity=0.440 Sum_probs=80.5
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
+.....++.+|||+|||.|..+.... .+.+++|+|+|+.+++. ........+. ...+.++++||+|+|+.+|+|
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGG
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhh
Confidence 33335678999999999886544322 45699999999999988 2222223322 344456789999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++|+..++++++++|||||++++++++..
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999998764
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=5.1e-18 Score=146.91 Aligned_cols=149 Identities=24% Similarity=0.364 Sum_probs=101.0
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+.++.+|||+|||+|.... ... +..+|+|+|+|++|++.++. ...+..+|. +++|+++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEe
Confidence 4578899999999986432 222 34699999999999976642 224566676 78899999999
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchh--HHHHHHhhhcCC-------CCcchhhHHHHHH-h-hCC
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF--YEKAISAWRDGT-------AYGRVQLVVQYFQ-C-VEG 228 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~-~-~~g 228 (282)
+|++++++||++++..++++++|+|||||++++....... .......|.... .+.... .-.|+. . ..-
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~l~~s~~~f 226 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAK-EYEYLKSSINEY 226 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChH-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999887543211 111111121100 000000 011222 2 235
Q ss_pred CCchHHhhcCCCCcccccc
Q 023470 229 YTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 229 F~~~ei~~~~~~~g~~~~~ 247 (282)
++..|+.+.+..+||....
T Consensus 227 ~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAK 245 (261)
T ss_pred CCHHHHHHHHHHCCCCEEE
Confidence 6778888888899986543
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.75 E-value=9.6e-18 Score=142.15 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-C-CCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCce
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-S-YKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~-~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
..|...+...+.....++.+|||+|||+|....... . +.+|+|+|+|++|++.++....+.+++. +.+|+++++|
T Consensus 35 ~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sf 111 (226)
T PRK05785 35 VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSF 111 (226)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCE
Confidence 345555666665555567899999999997543322 1 4799999999999998876666677777 7899999999
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|+++++++|++|++.+++|++|+|||. ..++++.
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~ 147 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMG 147 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeC
Confidence 99999999999999999999999999994 3344443
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=2.2e-18 Score=125.52 Aligned_cols=88 Identities=27% Similarity=0.421 Sum_probs=70.5
Q ss_pred EEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 102 LDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 102 LDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
||+|||.|....... ++.+|+|+|+|+++++.+++. ..+...+. +++|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 899999876443322 589999999999998765432 23677777 88999999999999999999999999
Q ss_pred HHHHHHHHcccCCcEEEE
Q 023470 175 KVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li~ 192 (282)
.++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.73 E-value=2.5e-17 Score=136.88 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=105.9
Q ss_pred HHHHHhhCC--CCCeEEEeCCcccchhhhh---cC------CCeEEEEcCCHHHHHhCCCC-----------CceEEeec
Q 023470 88 TNLYRQMLR--PGSEVLDLMSSWVSHLPQE---VS------YKRVVGHGLNAQELAKNPRL-----------EYFIVKDL 145 (282)
Q Consensus 88 ~~~~~~~~~--~~~~vLDiGcG~~~~~~~~---~~------~~~v~giD~s~~~l~~~~~~-----------~~~~~~d~ 145 (282)
.+.+...+. +++++||++||+|...... .. ..+|+.+|+|+.||+.+++. ..|+.+|.
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 344444444 4689999999988643322 22 38999999999999754422 24555566
Q ss_pred ccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE-EEEcCch--hHHHHHHhhhcC------CCCcch
Q 023470 146 NQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI-VSFSNRM--FYEKAISAWRDG------TAYGRV 216 (282)
Q Consensus 146 ~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li-~~~~~~~--~~~~~~~~~~~~------~~~~~~ 216 (282)
++|||++++||..++.+.|..+++++++++|++|||||||++. +.+++-. ........|.-. ..+...
T Consensus 169 ---E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 169 ---EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred ---ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhh
Confidence 9999999999999999999999999999999999999999975 4555422 222222222111 111111
Q ss_pred hhHHHHH-HhhCCCCch-HHhhcCCCCccccc
Q 023470 217 QLVVQYF-QCVEGYTNP-EIVRKLPADSAAAQ 246 (282)
Q Consensus 217 ~~~~~~~-~~~~gF~~~-ei~~~~~~~g~~~~ 246 (282)
+..-.|+ .+..+|... ++...+..+||...
T Consensus 246 ~~sYqYLveSI~rfp~qe~f~~miedaGF~~~ 277 (296)
T KOG1540|consen 246 RKSYQYLVESIRRFPPQEEFASMIEDAGFSSV 277 (296)
T ss_pred HhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence 1122344 356889884 57788888888664
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=6.9e-17 Score=139.25 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
+..+|||+|||+|...... ..+.+|+|+|+|+.|++.++.. ..+..+|+ +.+++++++||+|+++.+++|+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCCCcEEEEEECchhhhcCC
Confidence 4578999999998643322 2568999999999999876654 25677777 778888899999999999999999
Q ss_pred HHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhh
Q 023470 173 PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~ 208 (282)
+..++.++.++|||||.++++.+......+....|.
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 999999999999999999999877655555666664
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=1.5e-16 Score=141.47 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=109.6
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||||||+|....... ....|+|+|+|+.|+.+++ ....+...++ +++++ +++||+|+|..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~~~FD~V~s~~ 197 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-LKAFDTVFSMG 197 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-cCCcCEEEECC
Confidence 56899999999987654332 4457999999998875321 1234566666 67777 78899999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc---Cchh----HHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS---NRMF----YEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
+++|..++..++++++++|||||.++++.. .... .......+.+.............+ ..+||+..++....
T Consensus 198 vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aGF~~i~~~~~~ 276 (322)
T PRK15068 198 VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAGFKDVRIVDVS 276 (322)
T ss_pred hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcCCceEEEEeCC
Confidence 999999999999999999999999998742 1110 011111111000000111122222 34888888776554
Q ss_pred CCCccccccccCchHHHH--HHhccCCCCCCeEEEEEeec
Q 023470 239 PADSAAAQEDKSPISWLM--RLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 239 ~~~g~~~~~~~~~~~~l~--~~~~~~~~~~~~~~v~~~k~ 276 (282)
.. .....+...|+. .+...|...++..+|.+|-+
T Consensus 277 ~t----~~~eqr~t~w~~~~sl~~fld~~~~~~t~eg~pa 312 (322)
T PRK15068 277 VT----TTEEQRKTEWMTTESLADFLDPNDPSKTIEGYPA 312 (322)
T ss_pred CC----CccccccccCcccCcHhhcCCCCCCCCcccCCCC
Confidence 43 123334455764 66667777788877777644
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=7.4e-17 Score=144.81 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+.++|. .++++++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEEC
Confidence 456789999999886443222 36799999999999875432 235667776 7788889999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+++|++|...++++++|+|||||++++..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999999999999864
No 14
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.69 E-value=1.8e-16 Score=139.72 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=105.6
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... ....|+|+|+|+.|+.++. ....+...++ ++++.. .+||+|+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i---e~lp~~-~~FD~V~s~ 195 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI---EQLHEL-YAFDTVFSM 195 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH---HHCCCC-CCcCEEEEc
Confidence 357899999999987644322 3457999999999875321 1223444454 566653 589999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC--chh-----HHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN--RMF-----YEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRK 237 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~ 237 (282)
.+++|++++..+|++++++|||||.|++++.. ... .........+.............+ ..+||+..++...
T Consensus 196 gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L-~~aGF~~V~i~~~ 274 (314)
T TIGR00452 196 GVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWL-EKVGFENFRILDV 274 (314)
T ss_pred chhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHH-HHCCCeEEEEEec
Confidence 99999999999999999999999999987431 100 000111111111111112222233 3377777766554
Q ss_pred CCCCccccccccCchHHHH--HHhccCCCCCCeEEEEEeec
Q 023470 238 LPADSAAAQEDKSPISWLM--RLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 238 ~~~~g~~~~~~~~~~~~l~--~~~~~~~~~~~~~~v~~~k~ 276 (282)
..-.. ...+..-||. .+...|...++..+|.+|-+
T Consensus 275 ~~tt~----~eqr~t~w~~~~sl~~~ldp~~~~~t~eg~~~ 311 (314)
T TIGR00452 275 LKTTP----EEQRKTDWILGESLEDFLDPTDPSKTLEGYDA 311 (314)
T ss_pred cCCCH----HHhhhhhhhhccchHhhcCCCCCCCcccCCCC
Confidence 44321 1222334654 55557777788888877643
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=3.4e-16 Score=133.23 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||+|||+|... +... +..+|+|+|+|+.|++.++. ...+..+|. ..+++++++||+|+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVT 119 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEE
Confidence 346789999999988643 3332 45799999999999865542 224555666 66777788999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhc-------------CCCCcchhhHHHHHHhhCCC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRD-------------GTAYGRVQLVVQYFQCVEGY 229 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~gF 229 (282)
+.++++|++++..+++++.++|||||.+++..............+.. ...+........ .....+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~ 197 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE--STRDFP 197 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH--HHHHcC
Confidence 99999999999999999999999999998764432111111111100 000000000001 122467
Q ss_pred CchHHhhcCCCCccccccc
Q 023470 230 TNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 230 ~~~ei~~~~~~~g~~~~~~ 248 (282)
+..++.+.+..+||.....
T Consensus 198 ~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 198 GMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred CHHHHHHHHHHcCCCeeEE
Confidence 7788888999999976543
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=2.9e-16 Score=135.65 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCC-CCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKL-EFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l-~~~~~s 157 (282)
.++.....++.+|||+|||+|....... .+.+|+|+|+|++|++.++.. ..+..+++ .++ ++.+++
T Consensus 36 ~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~ 112 (255)
T PRK11036 36 RLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETP 112 (255)
T ss_pred HHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCC
Confidence 3333333456799999999986543322 568999999999999765432 23455555 344 355689
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
||+|++..+++|+.++..+++++.++|||||.+++.+.+..
T Consensus 113 fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 113 VDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999999999999999999999999999999998876653
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=2e-16 Score=136.64 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+|||||||+|.... ...++.+|+|+|+|+.|++.++.. ..+..+|+ ++++ ++++||+|+|+.++||++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEehhhhhCC
Confidence 367899999999886443 333578999999999999876543 46677776 5554 467999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++..++++++++|||||.+++.+++
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999998764
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.67 E-value=8.3e-16 Score=133.26 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.++.+|||||||+|...... ..+.+|+|+|+|+.|++.++. ...+...|+ ...++++++||+|++..+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhh
Confidence 567889999999987633222 235799999999999876543 234555665 567888899999999999
Q ss_pred hhccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++|++ ++..++++++++|||||.++++..
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99986 788899999999999999998754
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=7.4e-16 Score=132.49 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=107.0
Q ss_pred ccccccchhHHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hh--cCCCeEEEEcCCHHHHHhCCC---------CCc
Q 023470 74 RFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QE--VSYKRVVGHGLNAQELAKNPR---------LEY 139 (282)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~--~~~~~v~giD~s~~~l~~~~~---------~~~ 139 (282)
+.+..|+. +...+..++...++++.+|||+|||+|.... .. .++.+|+|+|+|+.|++.++. ...
T Consensus 34 ~~~p~y~~-~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~ 112 (247)
T PRK15451 34 RSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVD 112 (247)
T ss_pred hcCCChHH-HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE
Confidence 33444442 3444444555566788999999999887542 21 267899999999999977643 234
Q ss_pred eEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEEEc----CchhHHHHHHhh---hcC
Q 023470 140 FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFS----NRMFYEKAISAW---RDG 210 (282)
Q Consensus 140 ~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~----~~~~~~~~~~~~---~~~ 210 (282)
+..+++ .+++++ .+|+|++++++||+++. ..++++++++|||||.++++.. +..........| ...
T Consensus 113 ~~~~d~---~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~ 187 (247)
T PRK15451 113 VIEGDI---RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRA 187 (247)
T ss_pred EEeCCh---hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHH
Confidence 555665 555553 58999999999999743 5699999999999999998632 111111112222 233
Q ss_pred CCCcchhhHH--HHHH-hhCCCCchHHhhcCCCCccccccc
Q 023470 211 TAYGRVQLVV--QYFQ-CVEGYTNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 211 ~~~~~~~~~~--~~~~-~~~gF~~~ei~~~~~~~g~~~~~~ 248 (282)
.++....... .-+. ...-.+..+..+.+.++||...+.
T Consensus 188 ~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 188 NGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred cCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 4444322211 1122 122356677888888899976554
No 20
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=3.2e-16 Score=126.37 Aligned_cols=92 Identities=26% Similarity=0.374 Sum_probs=76.4
Q ss_pred CeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCC----C-----CCceEEeecccccCCC-CCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNP----R-----LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~----~-----~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~ 166 (282)
..||++|||+|.-+.-. .+..+|+++|+++.|-+.+. + ...|.+++. ++++ ++++|||+|++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEEE
Confidence 45799999998754432 38899999999999875332 1 124667777 7887 88999999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.+.|+.+.|+|+.|+|||||++++-
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999999999999999999999999875
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=1.4e-15 Score=135.23 Aligned_cols=96 Identities=26% Similarity=0.238 Sum_probs=79.0
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.++.+|||||||+|... +...+..+|+|+|+|+.|++.++.. ..+..+|. +++++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChh
Confidence 35789999999988643 2333567999999999999766532 34566666 6788888999999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+|+++++.++++++|+|||||.+++..
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999999999999998753
No 22
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.64 E-value=1.1e-15 Score=123.50 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=90.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEec
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCA 164 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~ 164 (282)
+.+.+.++++.+|||+|||.|..+.... .+.+.+|+|++++.+..+-.+ ...+++|++ +.|. +++++||.|+++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEEehH
Confidence 3456678899999999999887665443 688999999999988765443 357888886 4554 899999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
.+|+++.+++.+|+|+.|+ |...++++||..++....
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~ 119 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL 119 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH
Confidence 9999999999999999988 778999999975554433
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.63 E-value=4.4e-16 Score=130.19 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC----------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE----------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~----------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+|||.|..-.... -+.+|+|+|++++|++.|+... .+.+.... .++.-..+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~--~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYED--TDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhh--cchhhcccccceeeeHHH
Confidence 4789999999775433322 6799999999999998765331 11121111 122222355999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHH
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA 203 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 203 (282)
++|+.|++.+++.+.+.|||||++++++.++......
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~ 204 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFA 204 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh
Confidence 9999999999999999999999999999887665543
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=6e-15 Score=128.65 Aligned_cols=97 Identities=33% Similarity=0.496 Sum_probs=78.8
Q ss_pred hCCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.++.+|||+|||.|.. ++... ...+|+|+|+|+.|++.+++ ...+...++ +.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEE
Confidence 356788999999998853 22222 34689999999999977653 224556666 6778888899999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++.+++|.++...++++++|+|||||++++.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999999999999986
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.63 E-value=5.2e-15 Score=126.08 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=89.1
Q ss_pred HHHHHHHhhC-CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCc
Q 023470 86 TLTNLYRQML-RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~~-~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s 157 (282)
.+.+.+.... ..+.+|||+|||+|.. ++...+..+++|+|+|+.++..++. ...+...|+ ..+++++++
T Consensus 22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~ 98 (240)
T TIGR02072 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSS 98 (240)
T ss_pred HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCc
Confidence 3444444332 3457899999998864 3333456789999999999865543 235677777 667777889
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhh
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 207 (282)
||+|++.++++|+.++..+++++.++|||||.++++.+...........+
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~ 148 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSF 148 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999877654444433333
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=3.1e-15 Score=140.42 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|.. ++.. .+.+|+|+|+|+.|++.++.+ ..+...|+ ..+++++++||+|+|.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAEN-FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSR 339 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEEC
Confidence 34677999999998863 3332 367999999999999765422 24566666 5677778899999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+++|+++++.++++++|+|||||.++++..
T Consensus 340 ~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999999998854
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.62 E-value=4.3e-15 Score=127.14 Aligned_cols=160 Identities=14% Similarity=0.233 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD 148 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~ 148 (282)
+...+..+....++++.+|||+|||+|.... .. .++.+++|+|+|+.|++.++.. ..+..+|+
T Consensus 39 ~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~--- 115 (239)
T TIGR00740 39 IITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--- 115 (239)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh---
Confidence 3333444333445678899999999987543 22 2578999999999999765422 24566666
Q ss_pred cCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc----hh---HHHHHHhhhcCCCCcchh--
Q 023470 149 QKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR----MF---YEKAISAWRDGTAYGRVQ-- 217 (282)
Q Consensus 149 ~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~----~~---~~~~~~~~~~~~~~~~~~-- 217 (282)
..++++ .+|+|++++++||+++ ...++++++|+|||||.++++.+-. .. .......|....++....
T Consensus 116 ~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (239)
T TIGR00740 116 RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEIS 193 (239)
T ss_pred hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 556654 5899999999999963 4679999999999999999884321 11 112223333333333221
Q ss_pred hHHHHHH-hhCCCCchHHhhcCCCCcccccc
Q 023470 218 LVVQYFQ-CVEGYTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 218 ~~~~~~~-~~~gF~~~ei~~~~~~~g~~~~~ 247 (282)
...+.+. ...-++..++...+..+||....
T Consensus 194 ~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 194 QKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 1112222 23457778888888888886533
No 28
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.61 E-value=5.2e-16 Score=114.46 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=54.2
Q ss_pred EEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCCC------ceEEeecccccCCC-CCCCceeEEEecchhhccC
Q 023470 102 LDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 102 LDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~------~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~ 171 (282)
||||||+|... ....+..+++|+|+|+.|++.+++.. .............. ...++||+|++++++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999987654 33447899999999999997776542 11222221101111 1225999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEE
Q 023470 172 QPEKVFAEVFRVLKPGGVF 190 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~l 190 (282)
++..++++++++|||||.|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=1.1e-15 Score=121.65 Aligned_cols=96 Identities=26% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCeEEEeCCcccchhhh----hcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHLPQ----EVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~----~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
++.+|||+|||+|..... ..+..+++|+|+|++|++.++. +..+.+.|+ .+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEE
Confidence 578999999998864332 2357899999999999976653 346778887 5565 55 7899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..+++|+.++..+++++.++||+||.+++....
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999988765
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=4.6e-15 Score=128.40 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+|||||||+|... +...++.+|+|+|+|+.|++.++.. ..+...|+ ..+. ++++||+|+++.++||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEEEEccChhh
Confidence 46789999999988643 3334678999999999999876543 34566666 4443 3568999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++...++++++++|||||.+++.+++
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999999999999999998764
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.58 E-value=3.6e-14 Score=120.81 Aligned_cols=98 Identities=34% Similarity=0.436 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|.... ... +..+++|+|+|+.+++.++.. ..+...|. ..+++++++||+|++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRS 93 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEE
Confidence 4567899999999886433 222 467999999999988655432 34555565 566777889999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+++|+.++..++++++++|||||.+++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred echhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999999999999999999998754
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=3.4e-14 Score=122.04 Aligned_cols=109 Identities=23% Similarity=0.377 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHh-hCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC------C---CceEEeecc
Q 023470 79 VDGGFISTLTNLYRQ-MLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR------L---EYFIVKDLN 146 (282)
Q Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~------~---~~~~~~d~~ 146 (282)
+++.-...+...+.. .+.+|++|||||||||..+... .-+.+|+|+++|+++.+.+++ . ..+...|.
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~- 131 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY- 131 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc-
Confidence 333444444444443 4779999999999998754332 236999999999998865442 1 23333443
Q ss_pred cccCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 147 QDQKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 147 ~~~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++ .+.||-|+|..+++|+.. .+.+|+.++++|+|||++++.
T Consensus 132 --rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 --RDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred --ccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 333 345999999999999975 889999999999999998764
No 33
>PRK06202 hypothetical protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=124.05 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCcccchhhhh-------cCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQE-------VSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~-------~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|...... .+..+|+|+|+|++|++.++... .+.+.+. ..++.++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEE
Confidence 35678999999988642221 12469999999999998765432 3444544 456666789999999
Q ss_pred cchhhccCCH--HHHHHHHHHcccCCcEEEEEEcCchhHHHHH---Hhh-hcCCCCcchhhHHHHHHhhCCCCchHHhhc
Q 023470 164 AVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI---SAW-RDGTAYGRVQLVVQYFQCVEGYTNPEIVRK 237 (282)
Q Consensus 164 ~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~ 237 (282)
++++||+++. ..++++++|+++ |.+++....+....... ..+ .....+.+ .+......++|+..|+.+.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVH---TDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceee---ccchHHHHhhcCHHHHHHH
Confidence 9999999875 469999999998 45555544432111111 000 00000110 1112233478999999999
Q ss_pred CCCCcccccc
Q 023470 238 LPADSAAAQE 247 (282)
Q Consensus 238 ~~~~g~~~~~ 247 (282)
+.+ ||....
T Consensus 211 l~~-Gf~~~~ 219 (232)
T PRK06202 211 APQ-GWRVER 219 (232)
T ss_pred hhC-CCeEEe
Confidence 998 887643
No 34
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=1.3e-14 Score=125.74 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCCeEEEeCCcccch-------hhhhcC-----CCeEEEEcCCHHHHHhCCCC---------------------------
Q 023470 97 PGSEVLDLMSSWVSH-------LPQEVS-----YKRVVGHGLNAQELAKNPRL--------------------------- 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~-------~~~~~~-----~~~v~giD~s~~~l~~~~~~--------------------------- 137 (282)
++.+|||+|||+|.. +....+ ..+|+|+|+|+.|++.|+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999998852 222222 46899999999999876642
Q ss_pred --------CceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 138 --------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 --------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..|.+.|+ .+.+.++++||+|+|.++++|++++ ..++++++++|||||++++.
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 23445555 4555567899999999999999644 46999999999999999986
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.55 E-value=1e-14 Score=109.72 Aligned_cols=95 Identities=27% Similarity=0.456 Sum_probs=70.3
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
|+.+|||||||+|... ++..++.+|+|+|+|++|++.+++ +..+...|+ . ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-E-FDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-c-cCccc-CCCCCEEEEC
Confidence 5789999999988653 333488999999999999865432 234566665 1 22232 3569999999
Q ss_pred c-hhhcc---CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 V-SVQYL---QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~-~l~~~---~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
. +++++ .+..++++++.+.|+|||+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345779999999999999999975
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.53 E-value=1.9e-14 Score=121.93 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=72.9
Q ss_pred eEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 100 EVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 100 ~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+|||||||+|.. ++...+..+|+|+|+|+++++.++. ...+...|+ ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 699999998864 3333456899999999999865543 124556665 333443 589999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|+.++..++++++++|||||.+++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999999999999999998754
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=4.1e-14 Score=117.57 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.. ..+.+.|+ ..++++ ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecch
Confidence 56789999999887543322 567999999999998754421 23445555 455553 679999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
||++ +...+++++.++|||||.+++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9886 467799999999999999654
No 38
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.52 E-value=7.8e-14 Score=115.60 Aligned_cols=106 Identities=28% Similarity=0.335 Sum_probs=79.8
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCC-CCCCCceeEEEecch
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~ 166 (282)
+.+.++++.+|||+|||+|...... .....++|+|+|++|++.++. ...+...++. ..+ ++++++||+|+++.+
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~--~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLD--EGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhh--hcccccCCCCcCEEEEhhH
Confidence 3445667889999999998765433 245688999999999977643 3456677763 224 366789999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
+||++++..+++++.|+++ .+++++|+.....
T Consensus 85 l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~ 116 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR 116 (194)
T ss_pred hHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH
Confidence 9999999999999988755 5677777754443
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.51 E-value=4e-14 Score=122.90 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC------CC---CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP------RL---EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~------~~---~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||||||||....... .+++|+|+.+|+++.+.++ +. ..+...|. .+++ .+||.|+|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~---~~fD~IvS 133 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLP---GKFDRIVS 133 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG------S-SEEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccC---CCCCEEEE
Confidence 6689999999999987543322 3789999999998876432 22 23445554 4443 38999999
Q ss_pred cchhhcc--CCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYL--QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+++|+ .+...+++++.++|||||++++.
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999 46789999999999999999875
No 40
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=8.9e-14 Score=119.66 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=107.1
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHh------CC-CCCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAK------NP-RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~------~~-~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.+.+|||||||.|.+.-+.. +...|+|+|++..-..+ .- .........+.. ++++. .++||+|+|..||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEEeeeh
Confidence 57899999999887764433 56689999999854322 11 111222221211 67776 6889999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEc---Cc--------hhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhh
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFS---NR--------MFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVR 236 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~ 236 (282)
-|..+|-..|+++...|+|||.+++.+. +. ..+......|. ..........+ ..+||+..+++.
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F----iPs~~~L~~wl-~r~gF~~v~~v~ 267 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF----IPSVAALKNWL-ERAGFKDVRCVD 267 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEE----eCCHHHHHHHH-HHcCCceEEEec
Confidence 9999999999999999999999998732 11 11111111221 01111122223 348999999988
Q ss_pred cCCCCccccccccCchH-HHHHHhccCCCCCCeEEEEEeec
Q 023470 237 KLPADSAAAQEDKSPIS-WLMRLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 237 ~~~~~g~~~~~~~~~~~-~l~~~~~~~~~~~~~~~v~~~k~ 276 (282)
..+-+ ..+.+++-| --..+-.+|...++..++.+|-+
T Consensus 268 ~~~Tt---~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPA 305 (315)
T PF08003_consen 268 VSPTT---IEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPA 305 (315)
T ss_pred CccCC---HHHhccCCCcCcccHHHhcCCCCCCCcccCCCC
Confidence 77652 222222222 23455566777788777776643
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=7.2e-14 Score=115.89 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.. ....+.|+ ...+++ ++||+|+++.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEecccc
Confidence 4578999999998743322 2567999999999999754321 23344444 334443 5799999999999
Q ss_pred ccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++ +...++++++|+|||||++++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 985 4567999999999999996543
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=2.7e-13 Score=113.08 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=72.9
Q ss_pred hCCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.++++.+|||+|||+|..+.. ..++.+++|+|+|++|++.++.. ..+..+++ .+ ++++++||+|+++.++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChh
Confidence 456778899999999875443 23578999999999999887653 34566665 44 7788999999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|++ +...++++++|++ ++.+++.
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 9995 3466999999997 4566554
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.48 E-value=8.3e-15 Score=108.50 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=63.7
Q ss_pred EEEeCCcccchhhhhc------CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEecc-h
Q 023470 101 VLDLMSSWVSHLPQEV------SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV-S 166 (282)
Q Consensus 101 vLDiGcG~~~~~~~~~------~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~-~ 166 (282)
|||+|||+|..+.... +..+++|+|+|++|++.+++ ...+.+.|+ .+++..+++||+|+++. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 7999999887544332 23799999999999975543 236788888 67887788999999964 5
Q ss_pred hhccC--CHHHHHHHHHHcccCCc
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGG 188 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG 188 (282)
++|+. +...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99986 34569999999999998
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.45 E-value=4.5e-13 Score=114.17 Aligned_cols=95 Identities=33% Similarity=0.457 Sum_probs=74.9
Q ss_pred CCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++.+|||+|||.|.... ...+ ..+++|+|+++.+++.++.. ..+...|. ..+++++++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEE
Confidence 56899999999886433 2223 58999999999988654432 24455555 555666789999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++++|+.++..+++++.++|+|||.+++..
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 9999999999999999999999999988753
No 45
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=2.7e-13 Score=128.04 Aligned_cols=95 Identities=24% Similarity=0.315 Sum_probs=75.0
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC--CCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE--FDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~--~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|... +...++.+|+|+|+|+.|++.++.. ..+..+|. .+++ +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEc
Confidence 6789999999988643 3335788999999999999765432 13345665 5565 778999999999
Q ss_pred chhhccC-------------CHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQ-------------QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~-------------~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++||+. +...++++++++|||||.+++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998752 45679999999999999999874
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=2.3e-13 Score=119.55 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.+ ..+...|+ ...++ +++||+|+++.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhh
Confidence 4458999999998744322 2568999999999998754321 23444555 33334 67899999999999
Q ss_pred ccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 169 YLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 169 ~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|++ +...+++++.++|||||++++..
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 986 55679999999999999976643
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.43 E-value=8.1e-13 Score=108.51 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=73.3
Q ss_pred hhCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEE
Q 023470 93 QMLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
..++++.+|||+|||+|.. ++...+..+|+|+|+|++|++.++. ...+..++. .+++. +++||+|
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV 116 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVV 116 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEE
Confidence 4456688999999998853 3334578899999999999865542 134556665 45555 6789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++.. +.+++.++++++++|||||++++....
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9974 457789999999999999999987543
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=1.9e-12 Score=109.16 Aligned_cols=95 Identities=28% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCeEEEeCCcccchhhh---hcCC-CeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQ---EVSY-KRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~---~~~~-~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||+|||.|..... ..+. .+++|+|+++.+++.++. ...+..+++ .++++++++||+|+++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 678999999998764332 2232 689999999998865432 235566666 556666788999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++|..++..+++++.++|+|||++++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999999999999999998753
No 49
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=106.14 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--C-CceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--L-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
..-|||||||+|..-.... .+...+|+|||+.||+.+.. . ..++.+|+. +.+||..++||.||+..+++|+=
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeeccc
Confidence 5679999999764332221 67899999999999987653 2 367888887 78999999999999998888771
Q ss_pred -----CHH----HHHHHHHHcccCCcEEEEEE
Q 023470 172 -----QPE----KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 172 -----~~~----~~l~~~~r~LkpgG~li~~~ 194 (282)
++. .++..++.+|++|++.++.+
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 333 27888999999999999875
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.40 E-value=8.9e-13 Score=119.99 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+.++.+|||||||+|...... ..+.+|+|+|+|++|++.+++.. .+...|. ..+ +++||+|++..++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~~fD~Ivs~~~~ 238 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CCCCCEEEEeCch
Confidence 457889999999998754322 24679999999999997665432 2333333 333 4789999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|+. +.+.++++++++|||||.+++...
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9995 457899999999999999998754
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=1.2e-12 Score=122.92 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++.+|||||||+|....... ...+|+|+|+|+.|++.++. ...+...|+.. ..+++++++||+|++.++++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHh
Confidence 46789999999886543322 45799999999999976532 23456666632 356778899999999999999
Q ss_pred cCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++ ...++++++|+|||||++++.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 986 467999999999999999886
No 52
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.39 E-value=9.1e-13 Score=105.83 Aligned_cols=123 Identities=22% Similarity=0.351 Sum_probs=81.8
Q ss_pred EEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEE
Q 023470 122 VGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVF 190 (282)
Q Consensus 122 ~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 190 (282)
+|+|+|++|++.+++ ...+.++|. +++|+++++||+|++.++++|++|+..++++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999999976531 236778887 789999999999999999999999999999999999999999
Q ss_pred EEEEcCc--hhHHHHHHhhhcCCCC---c---chhhHHHHH-HhhCCC-CchHHhhcCCCCcccccc
Q 023470 191 IVSFSNR--MFYEKAISAWRDGTAY---G---RVQLVVQYF-QCVEGY-TNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 191 i~~~~~~--~~~~~~~~~~~~~~~~---~---~~~~~~~~~-~~~~gF-~~~ei~~~~~~~g~~~~~ 247 (282)
++..... .........|...... . .....-+|+ .+...| +..|+...+.++||....
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 8764322 1111112222211000 0 000111233 233445 556778888889986643
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.38 E-value=2.4e-12 Score=108.94 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCC-CCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFD-HCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~-~~s~D~v~~~~~ 166 (282)
.+.+|||+|||+|...... ..+.+++|+|+|+.+++.++.. ..+...+. ..++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhH
Confidence 4778999999987643322 1456799999999988654421 23334444 333332 378999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++|+.++..+++++.++|+|||.++++..+..
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999999999999999999999998876553
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.38 E-value=6.4e-13 Score=113.22 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC-CCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l 167 (282)
++.+|||||||+|....... .+.+++|+|+++.+++.++.. ..+...+. ..++ ..+++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhHh
Confidence 57889999999876433221 467899999999988655421 23333443 3332 245789999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|++++..+++++.++|+|||.++++.++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 9999999999999999999999999877543
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=8.8e-13 Score=107.42 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
...+|.|+|||.|. .+.+..+...|+|+|-|++|+++++.. ..|..+|+ .++. ++...|+++++-+|+|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqWl 105 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQWL 105 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhhc
Confidence 45789999999774 456666999999999999999887643 46778887 5664 35789999999999999
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|..+.|..+...|.|||.|.+.+|+.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999999999999999999998864
No 56
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=4.6e-12 Score=104.95 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHhhCC-CCCeEEEeCCcccchhhhhc-----CCCeEEEEcCCHHHHHhCCCCC-------ceEEeecc
Q 023470 80 DGGFISTLTNLYRQMLR-PGSEVLDLMSSWVSHLPQEV-----SYKRVVGHGLNAQELAKNPRLE-------YFIVKDLN 146 (282)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~~~~~~~~~-----~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~ 146 (282)
++.|.......+..... ...+||+||||.|....... +...|+++|.|+.+++..+... ...+.|++
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt 132 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT 132 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceecc
Confidence 34554444444332221 12379999999776543332 3489999999999987655432 44677776
Q ss_pred ccc-CCCCCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 147 QDQ-KLEFDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 147 ~~~-~l~~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+. .-+...+++|+|+++|+|..++ ....++++++++|||||.+++-.-+
T Consensus 133 ~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 133 SPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred chhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 543 3456789999999999999995 4556999999999999999997433
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.37 E-value=2e-12 Score=107.83 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=75.9
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
++.+|||+|||+|... +...+..+|+|+|+|++|++.++. +..+..+|+. +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccccceEEE
Confidence 5678999999988653 333467899999999999865532 2345555541 2233 56789999999
Q ss_pred cchhhccC--------CHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 164 AVSVQYLQ--------QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 164 ~~~l~~~~--------~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
++...+.. ....++++++++|||||.+++..++.....+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~ 166 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYML 166 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH
Confidence 87654322 146799999999999999999987765554433
No 58
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.36 E-value=4.3e-12 Score=107.19 Aligned_cols=92 Identities=21% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... .+.+|+|+|+|++|++.+++ ...+.+.|+ ..++ ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~---~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSLC---GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhCC---CCcCEEEEhh
Confidence 457899999999887543332 46799999999999976542 224555555 4443 7899999999
Q ss_pred hhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++|++ +...+++++.+++++++.+.+.
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999985 4567999999999876555543
No 59
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.35 E-value=1.1e-11 Score=103.83 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~ 165 (282)
++++.+|||+|||+|... +... +...|+|+|+++ |... ....+..+|+.....+ ++.+++||+|+|..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI--VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC--CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 567889999999988743 3332 347999999998 3221 2245677777321100 25578899999988
Q ss_pred hhhccCCH-----------HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 166 SVQYLQQP-----------EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 166 ~l~~~~~~-----------~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.++..++ +.+++++.++|||||.+++.+...
T Consensus 126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 77665432 458999999999999999976543
No 60
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=9.1e-12 Score=104.48 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCCCC
Q 023470 96 RPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~~~ 154 (282)
+++.+|||+|||.|.-..-. ..+.+|+|+|+|+.+++.+. ....+.++|+ .+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCcc
Confidence 46789999999988533222 27889999999999887531 1124566776 444422
Q ss_pred -CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 155 -HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 155 -~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+.||.|+...+++|++ .....++.+.++|||||.+++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999999999996 3345899999999999986554
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=3.1e-12 Score=106.05 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC---CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE---FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~---~~~~s~D~v~ 162 (282)
...+|||||||.|... +...+..+|+|+|++++|++.++. +..+..+|+ ..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEE
Confidence 4568999999988654 333477899999999999876532 234556665 3322 4567999999
Q ss_pred ecchhhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhHHHH
Q 023470 163 CAVSVQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA 203 (282)
Q Consensus 163 ~~~~l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 203 (282)
+++...|... .+.++++++++|||||.+++.+.+.......
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~ 141 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDM 141 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 9876544322 1569999999999999999998766554443
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.34 E-value=3.8e-12 Score=105.44 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=68.4
Q ss_pred eEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeeccc----ccCCCC--CCCceeEEEecchhhccCC
Q 023470 100 EVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ----DQKLEF--DHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~----~~~l~~--~~~s~D~v~~~~~l~~~~~ 172 (282)
.++|+|||+|....... ...+|+|+|+|++||..+++......++... ++..++ .++|+|+|+|..++||+ |
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-d 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-D 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-c
Confidence 78999999884322222 4679999999999999887665333222211 122333 38999999999999999 8
Q ss_pred HHHHHHHHHHcccCCcEEEE
Q 023470 173 PEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~ 192 (282)
.+.++++++|+||+.|-++.
T Consensus 115 le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEE
Confidence 89999999999998875443
No 63
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.32 E-value=3.2e-12 Score=104.57 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC------CC-CceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP------RL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~------~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.++||+|||.|+ +++. .+..|+++|+|+.++++.. +. ....+.|+ .+..++ +.||+|++..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v 103 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVV 103 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESS
T ss_pred CCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEE
Confidence 56899999999886 4444 7889999999998775432 11 24566676 455554 67999999999
Q ss_pred hhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++|++ ..+.+++++...++|||++++.
T Consensus 104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 104 FMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 99996 4456999999999999998874
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=9.7e-12 Score=101.78 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=66.6
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|.. ++...+..+|+|+|+|++|++.++ + +..+..+|+ .+++ .+++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh
Confidence 478999999998853 333346689999999998875432 1 234555665 4443 357899999875
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+....++.++++|||||.+++...
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34567889999999999999998743
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.29 E-value=4.6e-11 Score=101.01 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=64.9
Q ss_pred hCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHH----hCCC--CCceEEeeccccc-CCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELA----KNPR--LEYFIVKDLNQDQ-KLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~----~~~~--~~~~~~~d~~~~~-~l~~~~~s~D~v~~ 163 (282)
.+.++.+|||+|||+|... +...+..+|+|+|+++.|++ .++. +...+.+|..... ..++. ++||+|++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 3458889999999987643 33334469999999998875 3332 3345555653210 12233 56999986
Q ss_pred cchhhccCCH---HHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQP---EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~---~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. .++ ..++++++|+|||||.++++++
T Consensus 148 d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 148 DV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CC-----CChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 43 333 3468999999999999999865
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=1.8e-11 Score=93.37 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|.. ++...+..+|+|+|+|+.+++.++.. ..+...+.. ..++....+||+|++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP--EALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc--ccChhhcCCCCEEEEC
Confidence 4567999999998864 33434568999999999988664321 233333331 1122234689999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
...++ ...++++++++|||||.+++++
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 76544 3689999999999999999875
No 67
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.29 E-value=8.6e-13 Score=108.32 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCce---EEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYF---IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~---~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
-.++||+|||+|..-.... ...+++|+|||..|++++....-+ .+.+... ..-...++.||+|++..|+.++.++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~-Fl~~~~~er~DLi~AaDVl~YlG~L 204 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVL-FLEDLTQERFDLIVAADVLPYLGAL 204 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHH-HhhhccCCcccchhhhhHHHhhcch
Confidence 4689999999875443332 356899999999999988766522 2333210 0111346789999999999999999
Q ss_pred HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCC
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~ 240 (282)
+.++.-+...|+|||.|.|++..-.-.... .......|.|......-.....||+.+++.+..-+
T Consensus 205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGF--VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred hhHHHHHHHhcCCCceEEEEecccCCCCCe--ecchhhhhccchHHHHHHHHhcCceEEEeecccch
Confidence 999999999999999999997542111100 01112233333322222334478888877655443
No 68
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.28 E-value=1.1e-11 Score=101.27 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=68.4
Q ss_pred ccccccccchhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC
Q 023470 72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL 151 (282)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l 151 (282)
+++.+..+...-.+.+.+.+.. .+++..|.|+|||.+...........|+..|+-+. +.....+|+ .++
T Consensus 48 fr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~v 116 (219)
T PF05148_consen 48 FRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANV 116 (219)
T ss_dssp HHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S---EEEEESS-S-------STTEEES-T---TS-
T ss_pred HHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCceEEEeeccCC-------CCCEEEecC---ccC
Confidence 3334444444455555555553 24567899999998765544334568999998762 345788999 899
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++++++|++|++.+|... |...++.|++|+|||||.|.|.
T Consensus 117 PL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEE
Confidence 9999999999999998777 9999999999999999999886
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.28 E-value=2.3e-11 Score=107.61 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=65.8
Q ss_pred HHHHHHHHhh-CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC-------------ceEEeeccccc
Q 023470 85 STLTNLYRQM-LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE-------------YFIVKDLNQDQ 149 (282)
Q Consensus 85 ~~~~~~~~~~-~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~-------------~~~~~d~~~~~ 149 (282)
+.+...+... ..++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.+. .+...|+ +
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~ 207 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---E 207 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---h
Confidence 3344444332 1256799999999987543322 4679999999999997654321 2333333 2
Q ss_pred CCCCCCCceeEEEecchhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 150 KLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
.+ +++||+|+|..+++|+++.. .+++.+.+ +.+||. ++++
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 22 57899999999999997643 46666665 455544 5554
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=3.4e-11 Score=101.36 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~~ 153 (282)
.+++.+|||+|||.|.-..-. ..+.+|+|+|+|+.+++++. ....+.++|+ .+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCc
Confidence 346789999999988643322 27889999999999887531 1123455666 44432
Q ss_pred C-CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 154 D-HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 154 ~-~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
. ...||.|+...+++|++ .....++.+.++|||||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 25799999999999996 345699999999999997544
No 71
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=1.5e-10 Score=100.32 Aligned_cols=99 Identities=24% Similarity=0.219 Sum_probs=67.6
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHH----HHHhCC--CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQ----ELAKNP--RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~----~l~~~~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|. +++... +...|+++|+|++ +++.++ .+...++.|...........++||+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5688999999998765 444443 3569999999986 445543 34456666653211222234589999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. ...+...++.+++++|||||.|++.+.
T Consensus 210 va--~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 210 VA--QPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CC--CcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 74 222334567799999999999999754
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.23 E-value=6.1e-11 Score=104.21 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeE
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
...+.....++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++.+. ...+..... ...+..+++||+
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~~~~~~~~~fDl 228 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-YLEQPIEGKADV 228 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-ccccccCCCceE
Confidence 34445555678999999999885432 2235569999999999997665432 111111111 122334578999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+++...+++ ..++.++.++|||||.++++-.
T Consensus 229 Vvan~~~~~l---~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 229 IVANILAEVI---KELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEecCHHHH---HHHHHHHHHHcCCCcEEEEEeC
Confidence 9998765443 6789999999999999999854
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=4.2e-11 Score=100.11 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|... +... ...+|+|+|+++++++.++++ ..+..+|. .......++||+|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I 146 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAI 146 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEE
Confidence 346789999999988643 3322 256999999999998655421 23445555 3322235789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++..+++|++ .++.+.|||||++++.+.
T Consensus 147 i~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 147 IVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 9999988775 478899999999998754
No 74
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=95.32 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=67.8
Q ss_pred hCCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
.+.++.+|||+|||+|.... ... +..+|+++|++++|++.++++ ..+...|.. ..++...++||+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~--~~l~~~~~~~D~ 114 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP--EILFTINEKFDR 114 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh--hhHhhcCCCCCE
Confidence 35578899999999886433 222 457999999999998754321 223334431 112222467999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|++.. ...++..+++++.++|||||++++...
T Consensus 115 V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 115 IFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99864 334678899999999999999998754
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.21 E-value=4.2e-11 Score=103.16 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=68.1
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEec
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
....+.....++.+|||+|||+|.... ...+..+|+|+|+|+.+++.++.+..... +.....++..+.+||+|+++
T Consensus 109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~--~~~~~~~~~~~~~fD~Vvan 186 (250)
T PRK00517 109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG--VELNVYLPQGDLKADVIVAN 186 (250)
T ss_pred HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--CCceEEEccCCCCcCEEEEc
Confidence 444455556688999999999875332 22244569999999999987654321100 00001122222379999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
...+. ...++.++.++|||||.++++.
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEE
Confidence 65433 3568999999999999999984
No 76
>PLN03075 nicotianamine synthase; Provisional
Probab=99.20 E-value=5.5e-11 Score=103.42 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCeEEEeCCccc----chhh-hhcCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWV----SHLP-QEVSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~----~~~~-~~~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
++.+|+|||||-| ..++ ...+..+++|+|+++++++.|++ ...|.++|+ .+.....+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 5688999999944 2223 23478899999999998865442 235666766 3333224679999
Q ss_pred Eecchhhcc--CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYL--QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++. +++++ .++.++++++++.|+|||.+++-..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999 98888 5889999999999999999998753
No 77
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=8.5e-11 Score=96.13 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|....... .+.+|+|+|+|++|++.++.+ ..+...|. ... ..++||+|+++..++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~--~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKG--VRGKFDVILFNPPYL 93 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccc--cCCcccEEEECCCCC
Confidence 55789999999886543332 334899999999998765432 22334443 222 245899999997776
Q ss_pred ccCC---------------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 169 YLQQ---------------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 169 ~~~~---------------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.++ .+++++++.++|||||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 6643 34579999999999999988754
No 78
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.19 E-value=1.2e-10 Score=103.01 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccc
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD 148 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~ 148 (282)
.+.+.....+.+.++++.+|||+|||+|.... .... ..+|+|+|+|++||+.+.+. ...+.+|+..
T Consensus 48 ~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~- 126 (301)
T TIGR03438 48 AILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ- 126 (301)
T ss_pred HHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc-
Confidence 35555555566666777899999999987433 2222 57999999999998655321 1335667632
Q ss_pred cCCCCCCC----ceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEc
Q 023470 149 QKLEFDHC----SFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 149 ~~l~~~~~----s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+++... ...++++..++++++. ...+|++++++|+|||.+++.+.
T Consensus 127 -~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 127 -PLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred -hhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1333222 3445555567887753 44589999999999999998753
No 79
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.18 E-value=3.2e-11 Score=107.37 Aligned_cols=105 Identities=27% Similarity=0.387 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC------------------CceEEeecccc---cCCCC
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL------------------EYFIVKDLNQD---QKLEF 153 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~------------------~~~~~~d~~~~---~~l~~ 153 (282)
++.+|||+|||-|.-+..- .+-..++|+|||...|+.|+.. ..++..|.... ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999966544432 2567999999999887544311 12333433221 12232
Q ss_pred CCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 154 DHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
....||+|.|.++||+.= ....+|+++.+.|||||+++.++|+.....
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~ 193 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIV 193 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHH
Confidence 335899999999999983 233499999999999999999999875553
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.18 E-value=1.2e-10 Score=103.38 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.+..+|||||||+|... ++..+..+++++|. +.+++.++. ...+..+|+ .+.+++ .+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~--~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYP--EADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCC--CCCEEE
Confidence 346679999999988643 34447789999997 677755432 224556665 334444 369999
Q ss_pred ecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
++.++|+..+. ..++++++++|||||++++.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999988654 46999999999999999876
No 81
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.18 E-value=4.5e-11 Score=97.02 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=74.5
Q ss_pred CeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 99 SEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++||+|||.|....... ...+++++|+|+.+++.++. +..+.+.++. . ..++++||+|+++.++.++.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp---~-~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVP---E-FWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TT---T----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCC---C-CCCCCCeeEEEEehHhHcCC
Confidence 679999999887655443 46799999999999976642 2356677763 2 24678999999999999997
Q ss_pred CH---HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHH
Q 023470 172 QP---EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224 (282)
Q Consensus 172 ~~---~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (282)
+. ..+++.+...|+|||.+++..... ..-..|....+ ...+.+.+.
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd----~~c~~wgh~~g---a~tv~~~~~ 169 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHARD----ANCRRWGHAAG---AETVLEMLQ 169 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-H----HHHHHTT-S-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEecC----CcccccCcccc---hHHHHHHHH
Confidence 64 458999999999999999875432 22344764442 234444444
No 82
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.18 E-value=9.6e-11 Score=97.95 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHH
Q 023470 96 RPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEK 175 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~ 175 (282)
+....|.|+|||.+..... ....|+.+|+-+ .+..++.+|+ .++|++|+|+|++|++.+|.-. |+..
T Consensus 179 ~~~~vIaD~GCGEakiA~~--~~~kV~SfDL~a-------~~~~V~~cDm---~~vPl~d~svDvaV~CLSLMgt-n~~d 245 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS--ERHKVHSFDLVA-------VNERVIACDM---RNVPLEDESVDVAVFCLSLMGT-NLAD 245 (325)
T ss_pred cCceEEEecccchhhhhhc--cccceeeeeeec-------CCCceeeccc---cCCcCccCcccEEEeeHhhhcc-cHHH
Confidence 3456789999997665543 446899999764 3446789999 7899999999999999888765 8999
Q ss_pred HHHHHHHcccCCcEEEEEE
Q 023470 176 VFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 176 ~l~~~~r~LkpgG~li~~~ 194 (282)
++.|++|+|||||.++|.-
T Consensus 246 f~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAE 264 (325)
T ss_pred HHHHHHHHhccCceEEEEe
Confidence 9999999999999999873
No 83
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=2.5e-10 Score=94.12 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=66.4
Q ss_pred hCCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC---C--CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK---L--EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~---l--~~~~~s~D~v~~~ 164 (282)
.++++.+|||+|||+|... +... +..+|+|+|+|+.+ . .....+...|+..... + .+++++||+|++.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--~-~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--P-IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--c-CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 3467889999999988643 2222 45689999999965 1 1233455666632110 0 1346789999986
Q ss_pred chh--------hccC---CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSV--------QYLQ---QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l--------~~~~---~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+. +|.. +.+.++++++++|+|||++++....
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 432 2221 2367999999999999999997543
No 84
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=7.8e-11 Score=96.88 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--C----ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--E----YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--~----~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
....++|||||.|...... ..-.+++-+|.|..|++.+++. . .+.+.|- +.+++.++++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---EFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch---hcccccccchhhhhhhhhhh
Confidence 3456899999866533222 2467899999999999877654 2 3445554 78899999999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
|+.|++..+..++..|||+|.++-+........+.+.
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 9999999999999999999999988777666665553
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=1.5e-10 Score=104.26 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+..+||||||.|..+.. ..+...++|+|+++.|++.+. + +..+..+|+.. ..-.++++++|.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~-ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL-LLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-hhhhCCCCceeEEEEeCC
Confidence 45899999999875543 347889999999998875442 1 22344555421 011467899999998765
Q ss_pred hhccCCH------HHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 167 VQYLQQP------EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 167 l~~~~~~------~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
.-|.... ..++++++|+|||||.+.+.+.+..+.....
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~ 245 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSL 245 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHH
Confidence 4443222 5799999999999999999887765554443
No 86
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=2.4e-10 Score=94.14 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|... +...+..+|+++|+|+.+++.++++ ..+...+. ..++ .++||+|++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~----~~~~-~~~~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA----PIEL-PGKADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc----hhhc-CcCCCEEEE
Confidence 346789999999988643 3334668999999999988665422 12223332 1233 357999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....++ ...++++++++|||||++++...
T Consensus 104 ~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 104 GGSGGN---LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence 876543 47789999999999999998753
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.14 E-value=2e-10 Score=97.45 Aligned_cols=87 Identities=22% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... .+..|+|+|+|+.|++.++.. ..+...| ++..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD------LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC------chhccCCcCEEEEcc
Confidence 467899999999886443322 456899999999998765432 2333333 333467899999999
Q ss_pred hhhccCC--HHHHHHHHHHcccCCc
Q 023470 166 SVQYLQQ--PEKVFAEVFRVLKPGG 188 (282)
Q Consensus 166 ~l~~~~~--~~~~l~~~~r~LkpgG 188 (282)
+++|+++ ...+++++.+.+++++
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 9999764 4568888888775444
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=1.7e-10 Score=96.84 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||||||+|.... ... ...+|+++|+++++++.+++ +..+..+|. .....+.+.||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCCCcCEEE
Confidence 4578999999999886442 222 34799999999999876543 234555554 33334567899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+.++++ ..+.+.|||||++++...
T Consensus 151 ~~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 151 VTAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ECCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 988765553 467789999999988753
No 89
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.13 E-value=8.7e-11 Score=101.12 Aligned_cols=113 Identities=26% Similarity=0.385 Sum_probs=81.4
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--------------CceEEeecccc---cC
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--------------EYFIVKDLNQD---QK 150 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--------------~~~~~~d~~~~---~~ 150 (282)
++....+++..++|+|||-|.-+..- .+-..++|+||+...+..|+.. ..|+.+|.... ..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 34455667888999999965544332 2557899999998776554321 24566665432 33
Q ss_pred CCCCCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
+++++.+||+|-|-|++|+.= ....+|+++.+.|||||.+|-++|+......
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~ 245 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIK 245 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHH
Confidence 455666799999999999762 3344999999999999999999999765543
No 90
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=4.3e-10 Score=91.22 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~ 155 (282)
+.+.+... +..+|||+|||+|. .++...+..+|+++|+|+.+++.++.+ ..+...|.. . ..++
T Consensus 23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~--~~~~ 96 (170)
T PF05175_consen 23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--E--ALPD 96 (170)
T ss_dssp HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--T--TCCT
T ss_pred HHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--c--cccc
Confidence 34444444 67889999999875 334434666899999999998655421 223344432 2 2346
Q ss_pred CceeEEEecchhhccCC-----HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 156 CSFDAVVCAVSVQYLQQ-----PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++||+|+|+-=++.-.+ ...+++++.+.|||||.+++....
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 89999999954433322 466899999999999999887654
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.13 E-value=3.1e-10 Score=101.78 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+|||+|||+|.. ++...+..+|+++|+|+.|++.++.+ ..+...|. .. ..+++||+|+|+..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~fDlIvsNPPF 271 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRFDMIISNPPF 271 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCccEEEECCCc
Confidence 46899999998864 33334667999999999999765421 12333333 11 225789999999888
Q ss_pred hccC-----CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQ-----QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~-----~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+.. ..+.+++++.+.|||||.+++...
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 7632 346799999999999999998754
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.11 E-value=2.6e-10 Score=103.05 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-----------CceEEeecccccCCCCCCCceeEEEe
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-----------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-----------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.+|||+|||+|.. ++...+..+|+++|+|+.|++.++.+ ..+...|.. . .+++.+||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~--~~~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL--S--GVEPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc--c--cCCCCCEEEEEE
Confidence 46899999998753 34444778999999999999766532 123333331 1 133468999999
Q ss_pred cchhhcc---C--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYL---Q--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~---~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+--+|.. . ....++++++++|||||.++++.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8555433 2 22468999999999999999885
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=5.3e-10 Score=100.16 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec-
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
++++.+|||+|||+|..+... ..+.+++|+|++++|+..++.+ ..+...|. .++++.+++||+|+++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDP 256 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECC
Confidence 557889999999998754332 3578999999999998754422 23556666 6777778899999996
Q ss_pred -chhh-----c-c-CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 -VSVQ-----Y-L-QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 -~~l~-----~-~-~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+... + . .-...+++++.++|||||++++.++..
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2111 1 1 113679999999999999999988764
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.07 E-value=5.5e-10 Score=94.05 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||||||+|.... ... ...+|+++|+++++++.++.+ ..+..+|. .......++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEE
Confidence 4578899999999887543 222 245799999999998765422 24455554 22222346899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.....+++ +.+.+.|||||++++.+.
T Consensus 152 ~~~~~~~~~------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 152 VTAAGPKIP------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred EcCCccccc------HHHHHhcCcCcEEEEEEc
Confidence 987765553 568899999999998754
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=1.6e-09 Score=89.86 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||+|... +...+..+|+|+|+|++|++.++.+ ..+...|.. ..++.....+|.++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~--~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP--ECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH--HHHhhCCCCCCEEEEE
Confidence 46789999999988753 3333668999999999998765432 233444442 1122112235665442
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
. ..+...++++++++|||||++++..++.
T Consensus 117 ~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 117 G----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred C----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 2 2356789999999999999999987654
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=92.59 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|...... .+..+|+|+|+|+.+++.++.+ ..+...|+ .. .+++++||+|+++-
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~np 109 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNP 109 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECC
Confidence 456789999999987643322 2345999999999998754432 12333343 22 24567899999983
Q ss_pred hhhccC---------------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 SVQYLQ---------------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~~---------------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
-..... ..+.+++++.++|||||++++....
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 211110 1355888999999999999986443
No 97
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.9e-10 Score=98.66 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=71.3
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEee----cccccCCCCCC-Cce
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKD----LNQDQKLEFDH-CSF 158 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d----~~~~~~l~~~~-~s~ 158 (282)
-..+.+.+.+.++.+|||+|||+|- ..+.+.+..+++|+|+++.+++.++.+....... ......+..+. +.|
T Consensus 151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 3456667777799999999999874 3444557788999999999987766443111111 00001222233 589
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|+++-.-+= ...+...+.+.|||||+++++
T Consensus 231 DvIVANILA~v---l~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 231 DVIVANILAEV---LVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cEEEehhhHHH---HHHHHHHHHHHcCCCceEEEE
Confidence 99999852211 146888999999999999998
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.04 E-value=9.3e-10 Score=80.06 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=68.4
Q ss_pred eEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCC-CCCCceeEEEecchhh
Q 023470 100 EVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~ 168 (282)
+|+|+|||.|...... ....+++++|+++.++..++ ....+...+. .+.. ...+++|+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 4899999987644332 25789999999998775443 1224445555 2322 2457899999999999
Q ss_pred c-cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 Y-LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~-~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778888999999999999999876
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=1.5e-09 Score=93.22 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=65.4
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.+.+|||+|||+|... +...+..+++|+|+|+.+++.++.+ ..+..+|. .. ++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCceeEEEECC
Confidence 4468999999987643 3333677999999999998765422 23445554 22 34568899999962
Q ss_pred h------hhccC--------------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 S------VQYLQ--------------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~------l~~~~--------------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- ++++. ....+++++.++|+|||.+++...
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 11111 123578999999999999998753
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.02 E-value=2.9e-10 Score=86.08 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCC--CCCCCceeEEEec
Q 023470 98 GSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKL--EFDHCSFDAVVCA 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l--~~~~~s~D~v~~~ 164 (282)
|.+|||+|||.|....... ...+++|+|+++..++.++ ....+.+.|. .+. .+++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEEC
Confidence 4589999999886543322 3589999999998875443 2235677776 333 3667999999999
Q ss_pred chhhcc--------CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYL--------QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~--------~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
--.... .....+++++.++|||||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 433321 12346899999999999999988763
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=99.01 E-value=2.3e-09 Score=87.99 Aligned_cols=96 Identities=24% Similarity=0.242 Sum_probs=66.2
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|....... .+.+++|+|+|+++++.++.+ ..+...|.. + ++.+++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~-~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---E-PFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---c-cccccCceEEEEC
Confidence 467789999999876533221 368999999999998655211 334555542 2 2344589999987
Q ss_pred chhhcc---------------------CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYL---------------------QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~---------------------~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....+. .....+++++.++|||||.+++.++
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 543221 1135589999999999999988765
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=3.3e-10 Score=99.08 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=69.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~ 155 (282)
+-..+.+.....++.+|||+|||+|- ..+...+..+|+|+|+++.+++.++.+. .+.+.. ......
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~-----~~~~~~ 223 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL-----SEDLVE 223 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC-----TSCTCC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE-----eccccc
Confidence 33556667777888999999999874 3444557779999999999886655321 222221 122234
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.||+|+++-..+-+ ..++..+.++|||||.++++
T Consensus 224 ~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 224 GKFDLVVANILADVL---LELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp S-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEE
T ss_pred ccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEc
Confidence 889999998654333 56788899999999999998
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.96 E-value=2.1e-09 Score=90.24 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|....... ...+|+++|+++++++.++.+ ..+...|.. ..++ ..++||+|++..
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~-~~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW--KGWP-AYAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc--cCCC-cCCCcCEEEEcc
Confidence 3467899999999886432111 235899999999998655421 234444432 2222 247899999988
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++++ .+.+.+.|+|||.+++.+.
T Consensus 153 ~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchhh------hHHHHHhcCCCcEEEEEEc
Confidence 77665 3567899999999998865
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=3e-09 Score=93.27 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|+. . ++++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~--~--~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF--A--ALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--h--ccCCCCccEEEEC
Confidence 456899999998764 33334678999999999998765432 234555542 1 2345689999997
Q ss_pred ------chh-------hccC------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 ------VSV-------QYLQ------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ------~~l-------~~~~------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+ +|-+ ....+++++.++|||||++++++.+
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 111 1111 1245789999999999999999764
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=98.96 E-value=4.5e-09 Score=90.29 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
...+|||+|||+|...... .+..+|+|+|+|+.|++.++.+ ..+...|+ ..+. .+.+||+|+++--+.|.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhc-ccCCCcEEEEcCCcccc
Confidence 4578999999988653322 2357999999999999876643 35666666 4443 24689999998666664
Q ss_pred CC--------------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 171 QQ--------------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 171 ~~--------------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+. ....++...++|+|+|.+++.+..
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 21 245677888999999988877554
No 106
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.96 E-value=3.2e-09 Score=89.78 Aligned_cols=93 Identities=19% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
..++||||+|-|....... -..+|++.+.|+.|..+-++.. +.+.+. .++.-.+.+||+|.|.++|....+|..+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg-~~vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~L 170 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG-FTVLDI---DDWQQTDFKFDVISCLNVLDRCDRPLTL 170 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC-CeEEeh---hhhhccCCceEEEeehhhhhccCCHHHH
Confidence 4679999999776544433 4578999999999986654433 455555 3444445689999999999999999999
Q ss_pred HHHHHHcccCCcEEEEEE
Q 023470 177 FAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 177 l~~~~r~LkpgG~li~~~ 194 (282)
|+.+++.|+|+|++++++
T Consensus 171 L~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 171 LRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHhCCCCEEEEEE
Confidence 999999999999999874
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.95 E-value=3.3e-09 Score=93.10 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=66.2
Q ss_pred CeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec--
Q 023470 99 SEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 99 ~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
.+|||+|||+|.. ++...+..+|+|+|+|+++++.++.+ ..+..+|.. . ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---E-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---c-cCcCCCccEEEECCC
Confidence 6899999998864 33334668999999999998765432 234455542 1 2334589999997
Q ss_pred -----------chhhccC------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 -----------VSVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 -----------~~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1233332 2446899999999999999999764
No 108
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=4.5e-09 Score=88.45 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCC
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLE 152 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~ 152 (282)
.++.+||+.|||.|. .++. .+.+|+|+|+|+.+++.+. ....+.++|+ .+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~ 116 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLP 116 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCC
Confidence 356899999999775 3343 6789999999999887631 1235677777 5664
Q ss_pred CC---CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 153 FD---HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 153 ~~---~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.. .+.||+|+-..++++++ ...+..+.+.++|+|||.+++.+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 21 26799999999999996 34459999999999999987653
No 109
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=3.1e-09 Score=90.51 Aligned_cols=96 Identities=28% Similarity=0.319 Sum_probs=80.0
Q ss_pred hCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
..+.+..++|+|||.|.++... +.+-++|+|++...+..+++.. ...++|+ ..+|+.+.+||.+++..++||+.
T Consensus 42 ~~~~gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhls 117 (293)
T KOG1331|consen 42 SQPTGSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLS 117 (293)
T ss_pred ccCCcceeeecccCCcccCcCC-CcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhh
Confidence 3445788999999999887664 6778999999999887776544 3667777 88999999999999999999996
Q ss_pred CH---HHHHHHHHHcccCCcEEEEE
Q 023470 172 QP---EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~---~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ..+++++.|+|+|||..++.
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Confidence 43 44999999999999997765
No 110
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=5.8e-09 Score=86.68 Aligned_cols=146 Identities=15% Similarity=0.294 Sum_probs=88.0
Q ss_pred hCCCCCeEEEeCC--ccc-chhhhhcCCCeEEEEcCCHHHHHhCCCCCceE------Ee---------------------
Q 023470 94 MLRPGSEVLDLMS--SWV-SHLPQEVSYKRVVGHGLNAQELAKNPRLEYFI------VK--------------------- 143 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G~~-~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~------~~--------------------- 143 (282)
....+..+||||| |.. ..++..+....|.|+||.+..+..|++..++. +.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3335678999999 543 35566667788999999999887765432110 00
Q ss_pred -----ecccc-------------cCCCCCCCceeEEEecchhhcc--C----CHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 144 -----DLNQD-------------QKLEFDHCSFDAVVCAVSVQYL--Q----QPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 144 -----d~~~~-------------~~l~~~~~s~D~v~~~~~l~~~--~----~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
+...+ +-+.+....||+|+|..+-.|+ . ....+|+.+++.|.|||+|+++-.....
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 00000 1122345679999999765544 2 4456999999999999999999433444
Q ss_pred HHHHHHhhh-cCC----CCcchhhHHHHHHhh-CCCCchHHhhcCC
Q 023470 200 YEKAISAWR-DGT----AYGRVQLVVQYFQCV-EGYTNPEIVRKLP 239 (282)
Q Consensus 200 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~-~gF~~~ei~~~~~ 239 (282)
+.+....-. -.. ..-....+.+++.+. -||+..+......
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~ 260 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIV 260 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccc
Confidence 444332221 111 122234455666654 6887766555433
No 111
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=6.8e-09 Score=91.92 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred CeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc-
Q 023470 99 SEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV- 165 (282)
Q Consensus 99 ~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~- 165 (282)
.+|||+|||+|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|+. .. +++++||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~--~~--l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF--AA--LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh--hh--CCCCCccEEEECCC
Confidence 6899999998864 33334678999999999999765432 234455542 22 3356899999971
Q ss_pred -----h-------hhccCC------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 -----S-------VQYLQQ------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 -----~-------l~~~~~------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
. ++|-+. ...+++++.+.|||||.+++.+.+
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 112211 245789999999999999998764
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.88 E-value=9.5e-09 Score=93.36 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~ 154 (282)
+.+.+.+...++++.+|||+|||+|... +...+..+|+|+|+|++|++.++.+ ..+..+|+.. ..++ .
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~-~ 316 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD-TDMP-S 316 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccc-c
Confidence 3444444445556779999999988643 3334678999999999999765532 2355555521 1122 2
Q ss_pred CCceeEEEecc--h-------h----hcc--------CC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 155 HCSFDAVVCAV--S-------V----QYL--------QQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 155 ~~s~D~v~~~~--~-------l----~~~--------~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++||+|+|+- . + .|- .| ...+++.+.+.|+|||.++++..
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 35799999972 1 0 000 01 23467778899999999998864
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=1.6e-08 Score=93.97 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC----CCCCcee
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE----FDHCSFD 159 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~----~~~~s~D 159 (282)
.++.+|||+|||.|.. ++... ...+|+++|+++.+++.++.+ ..+...|. ..++ ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCC
Confidence 4678999999987753 34433 346999999999988654321 23344444 3333 3457899
Q ss_pred EEEec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEE
Q 023470 160 AVVCA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 160 ~v~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.|++. .++++-++ ..+++.++.++|||||+++.++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99963 34444433 3468999999999999998775
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=1.2e-08 Score=90.71 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++++.+|||+|||+|.... ...+ ...|+|+|+++++++.++. +..+..+|. .......++||+|+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEE
Confidence 4577899999999886433 2222 3579999999999865542 123344443 33333346799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+...+++++ ..+.+.|||||++++.+.
T Consensus 155 ~~~g~~~ip------~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVDEVP------ETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchHHhH------HHHHHhcCCCCEEEEEeC
Confidence 987766553 457789999999988643
No 115
>PRK00811 spermidine synthase; Provisional
Probab=98.84 E-value=1.3e-08 Score=89.14 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC-------------CceEEeecccccCCCCCCCcee
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL-------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~-------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+...+||+||||.|....... +..+|+++|+++++++.+++. .++..+|.. .-+...+++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCccc
Confidence 456789999999876544322 456999999999998766532 123444431 11222457899
Q ss_pred EEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++...-.+.+. ..++++.+.+.|+|||.+++...++
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9999754333221 2568899999999999999865443
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=9.6e-09 Score=95.70 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||.|. .++... ...+|+|+|+|+.+++.++.+ ..+...|. ..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEE
Confidence 467899999999885 334333 356999999999998655422 23344444 3443 4578999996
Q ss_pred c------chhh---------------ccC-CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 A------VSVQ---------------YLQ-QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~------~~l~---------------~~~-~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- .++. ++. ....+|.++.++|||||++++++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 1111 111 123489999999999999999864
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=98.82 E-value=2.5e-08 Score=89.01 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC---------------CceEEeecc
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL---------------EYFIVKDLN 146 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~---------------~~~~~~d~~ 146 (282)
+.+........+...+||+||||.|..+.... +..+|+++|++++|++.|+.. ..+.++|..
T Consensus 138 E~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~ 217 (374)
T PRK01581 138 EALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK 217 (374)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence 33434333334556799999999886544433 347999999999999877641 123344432
Q ss_pred cccCCCCCCCceeEEEecchhh---ccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 147 QDQKLEFDHCSFDAVVCAVSVQ---YLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 147 ~~~~l~~~~~s~D~v~~~~~l~---~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.-+.-..++||+|++...-. ... --.++++.+++.|+|||.+++....+
T Consensus 218 --~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 218 --EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred --HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 11233356899999984210 011 11458999999999999998774433
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.81 E-value=1.2e-08 Score=94.67 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC-----ceEE--eecccccCCCC--CCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRLE-----YFIV--KDLNQDQKLEF--DHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~-----~~~~--~d~~~~~~l~~--~~~s~D~v~~ 163 (282)
.++.+|||+|||.|. .++...+..+|+|+|+++++++.++.+. ...+ .+... ...+. ++++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG-RGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc-ccccccccccccCEEEE
Confidence 467899999998774 3444445679999999999886543221 1111 22211 22222 4678999995
Q ss_pred c------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 A------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
. .++++.++ ..++|.+++++|||||.++.++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 34555544 24699999999999999998854
No 119
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.79 E-value=4.2e-08 Score=80.69 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCCCCe-EEEeCCcccc---hhhhhcCCCeEEEEcCCHHHH---H----hCC--CCCceEEeecccccCC
Q 023470 85 STLTNLYRQMLRPGSE-VLDLMSSWVS---HLPQEVSYKRVVGHGLNAQEL---A----KNP--RLEYFIVKDLNQDQKL 151 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~-vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l---~----~~~--~~~~~~~~d~~~~~~l 151 (282)
+.+.+.+.+.+++... |||||||+|. ++++.++.....-.|+++..+ . .+. ....-...|+.. ...
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~~w 90 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-PPW 90 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-CCC
Confidence 3466677777777776 9999999986 456677888999999988653 1 111 122234555543 223
Q ss_pred CC------CCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 152 EF------DHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 152 ~~------~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+. ..++||+|+|.+++|-++ ..+.+|+.+.++|+|||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 32 356899999999998776 3455999999999999999876
No 120
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.78 E-value=9.3e-09 Score=81.94 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=67.7
Q ss_pred CeEEEeCCcccchhhhhc--C-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQEV--S-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+|||+|||.|..+.... . ....+|+|.|+++++.|+.. ..|.+.|+. .-.+..+.||+|+--.+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~---~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT---DPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc---CCcccccceeEEeecCc
Confidence 389999999987765543 2 23599999999988655422 367788884 33555677888887766
Q ss_pred hhccC--------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQ--------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~--------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+. .+...+..+.+.|+|||+++|+-.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 55542 223478889999999999998844
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.77 E-value=1.1e-08 Score=84.57 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCCeEEEeCCcccc------hhhhh-----cC-CCeEEEEcCCHHHHHhCCCC---------------------------
Q 023470 97 PGSEVLDLMSSWVS------HLPQE-----VS-YKRVVGHGLNAQELAKNPRL--------------------------- 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~------~~~~~-----~~-~~~v~giD~s~~~l~~~~~~--------------------------- 137 (282)
+..+|+-+||++|. .+... .+ ..+|+|+|+|+.++++|+..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999997653 11111 11 46999999999999776411
Q ss_pred ---------CceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 138 ---------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 ---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..|...++ .+.+...+.||+|+|-+||-++... ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 13344444 2323345789999999999999644 45999999999999999986
No 122
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.77 E-value=1.5e-08 Score=85.80 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=67.9
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
...+|||+|||.|.. ++...+..+|+|+|+.++|.+.|+++ ..+...|+.. ..-...-.+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~-~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE-FLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH-hhhcccccccCEEEeC
Confidence 478899999997752 33333558999999999988766532 3455666632 1112333579999999
Q ss_pred ---c---hh----------hcc--CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ---V---SV----------QYL--QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ---~---~l----------~~~--~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ .- +|. -+.++.++.+.++|||||.+.+..+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 1 11 122 2667899999999999999998865
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.75 E-value=3.1e-08 Score=85.81 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++..+|||||||.|.. +....+..+|+++|+++++++.+++. ..+.++|.. .-+.-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEE
Confidence 4567899999997764 33445788999999999999765432 133445542 112222367999998
Q ss_pred cchh-hccC---CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSV-QYLQ---QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l-~~~~---~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
...- ...+ ...++++++.++|+|||.+++.+.+
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5311 1111 1267999999999999999987543
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=3.1e-08 Score=91.80 Aligned_cols=98 Identities=21% Similarity=0.380 Sum_probs=65.6
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC--CCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
..++.+|||+|||.|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|. ..++ +.+++||.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEE
Confidence 34788999999998753 33333447999999999998655422 23445555 3332 3457899999
Q ss_pred ec----c--hhh------ccCC----------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA----V--SVQ------YLQQ----------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~----~--~l~------~~~~----------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. . ++. |... ...+++++.++|||||++++++.
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 43 1 121 1111 13589999999999999998864
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.73 E-value=9.4e-08 Score=77.14 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=68.9
Q ss_pred hCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC------C--ceEEeecccccCCCCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL------E--YFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~------~--~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.+.++.+++|||||+|.. ++...+.++|+++|-++++++..+.+ . ....++.. +.|+-. .++|.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~-~~~daiF 107 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDL-PSPDAIF 107 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCC-CCCCEEE
Confidence 355789999999998864 23334889999999999887543321 2 23333332 334322 2799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.... .+.+.+++.+...|||||++++....
T Consensus 108 IGGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 108 IGGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9887 35689999999999999999988653
No 126
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=3.3e-08 Score=86.18 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|.. ++...+..+++|+|+|+.+++.++.+ ..+...|+. . ++++++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~---~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF---E-PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc---C-cCCCCceeEEEEC
Confidence 3567899999998764 33334678999999999988655432 234444441 1 2235789999996
Q ss_pred ch------hh--------cc------------CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VS------VQ--------YL------------QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~------l~--------~~------------~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
-- ++ |- .....+++++.++|||||.+++.+.
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 21 11 11 1234588899999999999999763
No 127
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.73 E-value=9.1e-08 Score=82.42 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCC-CCCCceeEEEecc--h
Q 023470 98 GSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLE-FDHCSFDAVVCAV--S 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~-~~~~s~D~v~~~~--~ 166 (282)
..+|||+|||+|... +...++.+|+|+|+|+.+++.++.+ ..+..+|+.. .++ ...++||+|+++- .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~--~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYD--ALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh--hcchhcCCCEeEEEECCCCC
Confidence 458999999987543 3334667999999999998765532 2456666531 122 1135799999982 1
Q ss_pred ----hhccC----------------C----HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 ----VQYLQ----------------Q----PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 ----l~~~~----------------~----~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..++ | ...+++.+.++|||||.+++....
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11110 1 236788888999999999998653
No 128
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.70 E-value=2.9e-08 Score=82.04 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 98 GSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+.||.|||.|+...... -..+|.-+|+++..++.++. ..++....+ +++..+.++||+|.+-+++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-G
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHhh
Confidence 4679999999987554332 46799999999998876651 123444444 5554445799999999999
Q ss_pred hccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
.|++|. .++|+.+...|+|+|.+++-
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999854 46999999999999999985
No 129
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-07 Score=81.98 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=67.0
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC------c--eEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRLE------Y--FIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~------~--~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+|||+|. .++...+..+++-+|+|..+++.++.+. . +...+. -.+..+ +||+|+|+==
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~v~~-kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEPVEG-KFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----cccccc-cccEEEeCCC
Confidence 4589999999764 5566668899999999999998776432 1 223332 233434 8999999954
Q ss_pred hhccCCH-----HHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQQP-----EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~~~-----~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|--.+. ++++.++.+.|++||.|.+..-
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4433211 3699999999999999998854
No 130
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.70 E-value=2.6e-08 Score=83.15 Aligned_cols=92 Identities=22% Similarity=0.348 Sum_probs=61.3
Q ss_pred CCCCCeEEEeCCcccchhhh---hc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++++.+|||||||+|...+- .. +...|+++|+.+..++.++.+ ..+..+|.. ..++ ....||.|+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~-~~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWP-EEAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTG-GG-SEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccc-cCCCcCEEE
Confidence 67899999999998764332 22 455899999999887665432 245566642 2333 346799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+...++ ..+.+.||+||++++-+.
T Consensus 147 v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 998876554 457888999999998765
No 131
>PHA03412 putative methyltransferase; Provisional
Probab=98.69 E-value=1e-07 Score=80.26 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCeEEEeCCcccchhhhh---c---CCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEec--c
Q 023470 97 PGSEVLDLMSSWVSHLPQE---V---SYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCA--V 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~---~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~--~ 165 (282)
.+.+|||+|||+|...... . +..+|+|+|+++.+++.++.+ ..+...|+ ...++ +++||+|+++ +
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCC
Confidence 4679999999987654321 1 356999999999999887754 35666666 34443 4689999999 2
Q ss_pred hhhccC----------CHHHHHHHHHHcccCCcE
Q 023470 166 SVQYLQ----------QPEKVFAEVFRVLKPGGV 189 (282)
Q Consensus 166 ~l~~~~----------~~~~~l~~~~r~LkpgG~ 189 (282)
.-.... -...+++.+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 211111 134588899997777764
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=3.2e-08 Score=81.88 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=67.1
Q ss_pred eEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 100 EVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.+||||||.|.++.. ..+...++|+|++...++++. .+..+..+|.......-++++++|.|..+|-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 789999999876544 448999999999987664332 233444445421111124578999999976432
Q ss_pred ccC--------CHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 169 YLQ--------QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 169 ~~~--------~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
|.. --..++..++++|||||.+.+.+.+..+......
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLE 144 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 221 1145999999999999999999877666554433
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=3.3e-08 Score=91.57 Aligned_cols=99 Identities=14% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC-CCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~-~~~~s~D~v 161 (282)
..++.+|||+|||.|. +++... +..+|+++|+|+.+++.++.+ ..+...|. ..++ +.+++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEE
Confidence 4577899999999875 344443 467999999999998655422 13444444 3443 335789999
Q ss_pred Eec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++. .++..-++ ..++|.++.+.|||||.++.++..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 963 22222111 144799999999999999988643
No 134
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.69 E-value=2.7e-08 Score=89.43 Aligned_cols=103 Identities=36% Similarity=0.462 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCC
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~ 156 (282)
...++..+.++..++|+|||.+. .+-..+..+.++|+|.++..+.++. ....+.+.++ ...|++++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn 177 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDN 177 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCcc
Confidence 34455666788899999998654 3444457889999999987665433 2235566677 77899999
Q ss_pred ceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 157 SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.||.+-+..+.+|.++...+++|++|++||||.++..
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999999999999875
No 135
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.68 E-value=7.3e-08 Score=81.11 Aligned_cols=95 Identities=22% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhC---CCC-----------------CceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKN---PRL-----------------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~---~~~-----------------~~~~~~d~~~~~~l~~ 153 (282)
.+++.+||..|||.|.-+.-. ..+.+|+|+|+|+.+++.+ ... ..+.++|+ .+++.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCCh
Confidence 456779999999977533221 1678999999999998764 111 13445666 55543
Q ss_pred CC-CceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 154 DH-CSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 154 ~~-~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
.. ++||+|+=..+++.++ ...+..+.+.++|||||.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 32 4799999999999886 556699999999999999443
No 136
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.68 E-value=1.4e-08 Score=92.94 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhhCCCC--CeEEEeCCcccchhhhhc-CCCeEEEE---cCCHHHHHhC--CCCCceEEeecccccCCCC
Q 023470 82 GFISTLTNLYRQMLRPG--SEVLDLMSSWVSHLPQEV-SYKRVVGH---GLNAQELAKN--PRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~vLDiGcG~~~~~~~~~-~~~~v~gi---D~s~~~l~~~--~~~~~~~~~d~~~~~~l~~ 153 (282)
.+++.+.+.+......+ ..+||+|||.|.+.+... .+..+..+ |..+.+++.+ ++... .++-+.. ..||+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa-~~~~~~s-~rLPf 177 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA-MIGVLGS-QRLPF 177 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch-hhhhhcc-ccccC
Confidence 45555555554322222 247999999877665544 23233232 2233344333 33322 2222211 78999
Q ss_pred CCCceeEEEecchhh-ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 154 DHCSFDAVVCAVSVQ-YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++++||+|.|+.++. +..+....|-|+.|+|+|||+++++-|
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 999999999998764 444445689999999999999999854
No 137
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.68 E-value=1e-07 Score=83.15 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCeEEEeCCcccc------h-hhhhc----CCCeEEEEcCCHHHHHhCCCCC----------------------------
Q 023470 98 GSEVLDLMSSWVS------H-LPQEV----SYKRVVGHGLNAQELAKNPRLE---------------------------- 138 (282)
Q Consensus 98 ~~~vLDiGcG~~~------~-~~~~~----~~~~v~giD~s~~~l~~~~~~~---------------------------- 138 (282)
..+|+..||++|. . +.... ...+|+|+|+|..+|++|+...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999996653 1 11111 2468999999999997764221
Q ss_pred -----------ceEEeecccccCCCCC-CCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 139 -----------YFIVKDLNQDQKLEFD-HCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 139 -----------~~~~~d~~~~~~l~~~-~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.|...++ .+.+++ .+.||+|+|.+++.|+.. ...+++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1222222 121222 478999999999999954 556999999999999998876
No 138
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=4.8e-08 Score=92.20 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 98 GSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
..+|||+|||+|... +...+..+|+|+|+|+.+++.++.+ ..+..+|+. . .+++++||+|+|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~--~--~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF--E--NIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh--h--hCcCCCccEEEECC
Confidence 468999999988643 3334778999999999998766532 123344431 1 23356899999961
Q ss_pred --------------hhhccC------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 --------------SVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 --------------~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++.|-+ ....+++++.++|+|||.+++++.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111211 113367888999999999999864
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=9e-08 Score=83.41 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=64.5
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.+||+||||.|...... .+..+++++|+++++++.+++.. .+...|.. .-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEE
Confidence 4569999999987644332 23578999999999987655321 12222221 1111124689999
Q ss_pred EecchhhccC--C--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQ--Q--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~--~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++.......+ + ..++++.+.+.|+|||.+++...++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9875422221 1 3578999999999999999875544
No 140
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=9.2e-08 Score=90.71 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=68.0
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCC-CeEEEEcCCHHHHHhCCCCC---------------ceEEeecccccCCCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSY-KRVVGHGLNAQELAKNPRLE---------------YFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~-~~v~giD~s~~~l~~~~~~~---------------~~~~~d~~~~~~l~~~~~ 156 (282)
.++..+|||||||.|...... .+. .+|+++|+++++++.++++. ++...|.. .-+...++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~~~~~ 372 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLRKLAE 372 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHHhCCC
Confidence 345678999999987644332 233 79999999999998776521 22333431 11222346
Q ss_pred ceeEEEecchhhccCCH-----HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 157 SFDAVVCAVSVQYLQQP-----EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~-----~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+||+|++...-...+.. +++++.+.+.|||||.+++...++
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 89999998653332221 358899999999999999875443
No 141
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=1.5e-07 Score=79.67 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhh-CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEe--ecccc
Q 023470 82 GFISTLTNLYRQM-LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVK--DLNQD 148 (282)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~--d~~~~ 148 (282)
.+...+.+.+.+. ..++..|||+|||.|.. ++...+.+.|+|+|.|+.++..+.++. .+.+. ++..+
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 4555555555432 22456799999998864 344457899999999999886554332 12222 22222
Q ss_pred --cCCCCCCCceeEEEec--chhh------------c------------cCCHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 149 --QKLEFDHCSFDAVVCA--VSVQ------------Y------------LQQPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 149 --~~l~~~~~s~D~v~~~--~~l~------------~------------~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
...+..++.+|+++|+ ++.+ | ......++.-+.|.|+|||.+.+++..+.--
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 3344567899999999 2110 0 0111235777899999999999997633222
Q ss_pred HHHHHhhhc
Q 023470 201 EKAISAWRD 209 (282)
Q Consensus 201 ~~~~~~~~~ 209 (282)
......|..
T Consensus 292 ~~lv~~~m~ 300 (328)
T KOG2904|consen 292 SYLVRIWMI 300 (328)
T ss_pred cHHHHHHHH
Confidence 233444543
No 142
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.65 E-value=1.2e-07 Score=78.22 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCeEEEeCCc-ccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCC---CCCceeEEEecchhhccCCH
Q 023470 98 GSEVLDLMSS-WVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEF---DHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l~~~~~~ 173 (282)
..++|||||= +..... ..+...|+.||+++ ........|+ .+.|+ ++++||+|+++.||++++++
T Consensus 52 ~lrlLEVGals~~N~~s-~~~~fdvt~IDLns-------~~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS-TSGWFDVTRIDLNS-------QHPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc-ccCceeeEEeecCC-------CCCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 3689999993 222222 23456799999987 2334567777 45544 46789999999999999988
Q ss_pred HH---HHHHHHHcccCCcE-----EEEEEcCc
Q 023470 174 EK---VFAEVFRVLKPGGV-----FIVSFSNR 197 (282)
Q Consensus 174 ~~---~l~~~~r~LkpgG~-----li~~~~~~ 197 (282)
.. +++.+++.|+|+|. |++..|.+
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 76 99999999999999 99988865
No 143
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.62 E-value=7.4e-08 Score=83.65 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||.|... +... ....|+++|+++.+++.++.+ ..+...|. ..++...++||+|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEE
Confidence 357889999999877533 3333 346999999999988654322 12333333 33443446799999
Q ss_pred ec------chhhccC----------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQ----------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~----------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. .++.+-+ ...++|+++.+.|||||+++.++.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 1222111 113489999999999999998754
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=1.4e-07 Score=76.29 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.++.+|||+|||+|....... .+.+++|+|+++.+++.+++ +..+..+|+ ..+++++.+||.|+++.-.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCcc
Confidence 456789999999886544332 36799999999998865442 234556666 66666666799999975433
Q ss_pred ccCCHHHHHHHHHHc--ccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCcccc
Q 023470 169 YLQQPEKVFAEVFRV--LKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAA 245 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~--LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g~~~ 245 (282)
+. ...+..+... +.++|.+++... . .+..........|..+..+..+ |...++...++...|.+
T Consensus 89 -~~--~~~i~~~l~~~~~~~~~~l~~q~e---~-a~rl~~~~~~~~y~~lsv~~~~------~~~~~~~~~v~~~~F~P 154 (169)
T smart00650 89 -IS--TPILFKLLEEPPAFRDAVLMVQKE---V-ARRLAAKPGSKDYGRLSVLLQP------YFDVKILFKVPPEAFRP 154 (169)
T ss_pred -cH--HHHHHHHHhcCCCcceEEEEEEHH---H-hHHhcCCCCCCcccHHHHHHHH------HeeEEEEEEEChhhCCC
Confidence 21 3344444432 447777777632 1 1122223333455544443332 44455555555544543
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.8e-07 Score=77.72 Aligned_cols=134 Identities=22% Similarity=0.200 Sum_probs=90.2
Q ss_pred hhCCCCCeEEEeCCcccchhhhh---c-CCCeEEEEcCCHHHHHhCCCCC---------ceEEeecccccCCCCCCCcee
Q 023470 93 QMLRPGSEVLDLMSSWVSHLPQE---V-SYKRVVGHGLNAQELAKNPRLE---------YFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~~~~~---~-~~~~v~giD~s~~~l~~~~~~~---------~~~~~d~~~~~~l~~~~~s~D 159 (282)
..+.++.+|||.|.|.|...+.. . +..+|+..|+-++..+.|+++. .....|+ .+..++ +.||
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~-~~vD 165 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDE-EDVD 165 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---cccccc-cccC
Confidence 35679999999999987643332 2 6689999999998887765432 2334444 333333 3899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCC
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLP 239 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~ 239 (282)
+|+. -+++|..++..++.+|||||.+++-.|.-.-..+... -+.. .||..+|..+.+.
T Consensus 166 av~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~----------------~l~~-~g~~~ie~~E~l~ 223 (256)
T COG2519 166 AVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE----------------ALRE-RGFVDIEAVETLV 223 (256)
T ss_pred EEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH----------------HHHh-cCccchhhheeee
Confidence 9988 6789999999999999999999988775322222111 1222 4888888777776
Q ss_pred CCccccccccCch
Q 023470 240 ADSAAAQEDKSPI 252 (282)
Q Consensus 240 ~~g~~~~~~~~~~ 252 (282)
+..-......+|.
T Consensus 224 R~~~v~~~~~RP~ 236 (256)
T COG2519 224 RRWEVRKEATRPE 236 (256)
T ss_pred heeeecccccCcc
Confidence 6433344444443
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.56 E-value=2.5e-07 Score=81.26 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHH-----HHhCCCCC---ceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQE-----LAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~-----l~~~~~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+-++..|||+|||+|- .++.+.+..+|+|+|.|.-+ +....+.. .++.+.+ +++.+|.+++|+|+|-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSE 134 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeeh
Confidence 4468899999998774 45566688999999999743 22222222 3445555 5555557899999998
Q ss_pred c---hhhccCCHHHHHHHHHHcccCCcEEEE--------EEcCchhHHHHHHhhhcCCCCcc
Q 023470 165 V---SVQYLQQPEKVFAEVFRVLKPGGVFIV--------SFSNRMFYEKAISAWRDGTAYGR 215 (282)
Q Consensus 165 ~---~l~~~~~~~~~l~~~~r~LkpgG~li~--------~~~~~~~~~~~~~~~~~~~~~~~ 215 (282)
+ +|-+-...+.++-.--+.|+|||.++= .+.++.........|.+..++..
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdm 196 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDM 196 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccch
Confidence 4 344445677788888899999999842 23444555555667877666543
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=1.6e-07 Score=87.51 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC--CCCCceeEE
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE--FDHCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~--~~~~s~D~v 161 (282)
.++.+|||+|||.|.. ++... +..+|+|+|+++.+++.++++ ..+...|. ..+. ++ ++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEE
Confidence 4678999999998753 33333 467999999999988654321 23445554 3332 33 689999
Q ss_pred Eecc------hhhccCC----------------HHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAV------SVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~------~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++.- ++.+-++ ...+++++.++|||||.++.++
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9751 1221111 1347999999999999999764
No 148
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.55 E-value=4.9e-07 Score=78.03 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CCCeEEEeCCcccc-------hhhhhc-----CCCeEEEEcCCHHHHHhCCCCC--------------------------
Q 023470 97 PGSEVLDLMSSWVS-------HLPQEV-----SYKRVVGHGLNAQELAKNPRLE-------------------------- 138 (282)
Q Consensus 97 ~~~~vLDiGcG~~~-------~~~~~~-----~~~~v~giD~s~~~l~~~~~~~-------------------------- 138 (282)
...+|+-+||++|. .+.... ...+|+|+|+|..+|++|+...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36789999997653 112222 2579999999999997765211
Q ss_pred -----------ceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 139 -----------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 139 -----------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
.|...++. .+.+ ..+.||+|+|-+||-++..+ .++++.++..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl--~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLL--DDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCC--CCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11222221 1111 34669999999999999644 44999999999999999985
No 149
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.53 E-value=3.9e-07 Score=77.99 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC--CCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN--PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~--~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+..+|+|||+|.|... ....|+.+++..|. +..++.+ .....+..+|+ . -+++. +|+++..++||+.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhc
Confidence 34568999999987654 44458999999999 6666433 34456777777 3 34444 9999999999999
Q ss_pred CCHH--HHHHHHHHcccCC--cEEEEE
Q 023470 171 QQPE--KVFAEVFRVLKPG--GVFIVS 193 (282)
Q Consensus 171 ~~~~--~~l~~~~r~Lkpg--G~li~~ 193 (282)
++.+ .+|+++++.|+|| |+|+|.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 7654 4999999999999 998875
No 150
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.3e-07 Score=75.57 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||||||+|...+-.. -..+|+.+|..++..+.|+++ ..+.++|.. ..++ +...||.|+...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--~G~~-~~aPyD~I~Vta 146 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--KGWP-EEAPYDRIIVTA 146 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--cCCC-CCCCcCEEEEee
Confidence 4588999999999886544322 234999999999877766532 233444432 3333 247899999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+...+| +.+..-|||||++++-+.
T Consensus 147 aa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCC------HHHHHhcccCCEEEEEEc
Confidence 877776 457888999999998765
No 151
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.5e-07 Score=79.93 Aligned_cols=91 Identities=24% Similarity=0.335 Sum_probs=60.6
Q ss_pred eEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC------c--eEEeecccccCCCCCCCceeEEEec--ch
Q 023470 100 EVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE------Y--FIVKDLNQDQKLEFDHCSFDAVVCA--VS 166 (282)
Q Consensus 100 ~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~------~--~~~~d~~~~~~l~~~~~s~D~v~~~--~~ 166 (282)
+|||+|||+|.. ++...+..+|+|+|+|+++++.|+.+. + ....|.. . ++ .++||+|+|+ +.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~--~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--E--PL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--c--cc-CCceeEEEeCCCCC
Confidence 799999998864 344446679999999999997665332 1 2222221 1 22 2489999999 21
Q ss_pred hh---ccC------C--------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQ---YLQ------Q--------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~---~~~------~--------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
-. +.. + ...++.++.+.|+|||.+++...
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 11 110 1 13378889999999999999865
No 152
>PLN02366 spermidine synthase
Probab=98.50 E-value=6.7e-07 Score=79.07 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=65.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCC-CCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLE-FDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~-~~~~s~ 158 (282)
.++..+||+||||.|....... +..+|+.+|+++++++.+++. .+++++|.. .-+. .++++|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~--~~l~~~~~~~y 166 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV--EFLKNAPEGTY 166 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH--HHHhhccCCCC
Confidence 3567899999999776443322 346899999999988766542 233444431 0111 235689
Q ss_pred eEEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|++...-.+.+. -.++++.+.+.|+|||.++....
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99999654332221 24589999999999999987533
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.47 E-value=2.5e-07 Score=90.81 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|...... .+..+|+++|+|+.+++.++.+ ..++.+|+.. -+.-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--WLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--HHHHcCCCcCEEEEC
Confidence 5789999999987643322 2345799999999998765432 2345555421 111114689999996
Q ss_pred ---c--------hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ---V--------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ---~--------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ +.....+...++..+.++|+|||.++++..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 122233456688999999999999988753
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.46 E-value=3.4e-07 Score=83.76 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCCCCeEEEeCCcccchhhh-hc-CCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ-EV-SYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~-~~-~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|..... .. +..+|+++|+|+.+++.++.+ ..+..+|+... ..+....++||+|
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34678999999998874322 22 445999999999998655422 23455555210 0111134689999
Q ss_pred Eec---chh------hccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCA---VSV------QYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~---~~l------~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++. +.- ....+...++..+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998 111 111234456677899999999988653
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=9e-07 Score=78.18 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=75.5
Q ss_pred hCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCCC------ceEEeecccccCCCCCCCceeEEEec--
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~~------~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
.+.+|..|||-=||||..+-.. .-+.+++|+|++.+|++-++.+. .+.+....+...+|++++++|.|++-
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 3567889999999999876543 46889999999999998777543 22222221228899998999999987
Q ss_pred chhhc---cCC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQY---LQQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~---~~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.... ... ..++|+.++++||+||++++..|
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 22111 112 34589999999999999999977
No 156
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.42 E-value=1.7e-06 Score=67.27 Aligned_cols=95 Identities=35% Similarity=0.396 Sum_probs=65.8
Q ss_pred EEEeCCcccc--hhhhhcCC-CeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCC-CceeEEEecchhh
Q 023470 101 VLDLMSSWVS--HLPQEVSY-KRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDH-CSFDAVVCAVSVQ 168 (282)
Q Consensus 101 vLDiGcG~~~--~~~~~~~~-~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~-~s~D~v~~~~~l~ 168 (282)
++|+|||.|. .+...... ..++|+|+++.+++..+... .+...+... ..+++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG-GVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc-CCCCCCCCCceeEE-eeeeeh
Confidence 9999999887 34443332 48999999998886533221 344444421 1267766 489999 555444
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..+....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44348889999999999999999886653
No 157
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.41 E-value=4.5e-07 Score=77.30 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCC-C-CCCCceeE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKL-E-FDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l-~-~~~~s~D~ 160 (282)
+..+|||+|||+|.. ++... +..+|+++|+++++++.++.+ ..+..+|.... ..+ + .++++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 567899999987752 33333 467999999999988665422 23445554211 011 0 12468999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++..- -+.....+..+.+.|||||.+++.
T Consensus 148 VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 148 AFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 988532 123456899999999999998876
No 158
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.40 E-value=1.3e-06 Score=81.54 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... ...+|+|+|+|+.|++.++. +..+..+|+... ..+++.+++||+|++.-
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 367899999999886433322 45799999999999976542 235666665321 12334457899999852
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- .. .....++.+.+ ++|++.+++++.
T Consensus 376 P--r~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 376 P--RA-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred C--Cc-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 1 00 12345555555 699999999974
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=73.73 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred CeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 99 SEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+||||||.|.++.. ..|...++|+|+....+.++. + +......|...-.+.-+++++.|-|..+|-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4799999998876544 448899999999987654321 1 2233333332112222456799999998754
Q ss_pred hccCCH--------HHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 168 QYLQQP--------EKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 168 ~~~~~~--------~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
-|-... ..+++.+.++|||||.+.+.+.+..+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 333211 45999999999999999999877655443
No 160
>PLN02672 methionine S-methyltransferase
Probab=98.37 E-value=1.7e-06 Score=87.36 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC------------------------CceEEeecccccC
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL------------------------EYFIVKDLNQDQK 150 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~------------------------~~~~~~d~~~~~~ 150 (282)
+.+|||+|||+|.. ++...+..+|+|+|+|+++++.++.+ ..+...|+. ..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~--~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL--GY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh--hh
Confidence 45899999998753 34444667999999999998655321 234455542 11
Q ss_pred CCCCCCceeEEEec--c------------hhhccC--------------C----H------HHHHHHHHHcccCCcEEEE
Q 023470 151 LEFDHCSFDAVVCA--V------------SVQYLQ--------------Q----P------EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~------------~l~~~~--------------~----~------~~~l~~~~r~LkpgG~li~ 192 (282)
+......||+|||+ + +.+|-+ . . ..++.++.++|||||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 21111369999999 1 221110 1 1 4578889999999999999
Q ss_pred EEcCc
Q 023470 193 SFSNR 197 (282)
Q Consensus 193 ~~~~~ 197 (282)
++...
T Consensus 277 EiG~~ 281 (1082)
T PLN02672 277 NMGGR 281 (1082)
T ss_pred EECcc
Confidence 97653
No 161
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.28 E-value=5.6e-06 Score=70.99 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCccc-chhhhh-cCCCeEEEEcCCHHHHH-------hCC---------------CC--------------
Q 023470 96 RPGSEVLDLMSSWV-SHLPQE-VSYKRVVGHGLNAQELA-------KNP---------------RL-------------- 137 (282)
Q Consensus 96 ~~~~~vLDiGcG~~-~~~~~~-~~~~~v~giD~s~~~l~-------~~~---------------~~-------------- 137 (282)
.++.++||||||-. ..+... ....+|+..|.++.-++ ... +.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35678999999943 222222 24568999999975431 000 00
Q ss_pred -CceEEeecccccCCCC---CCCceeEEEecchhhccC-CHHH---HHHHHHHcccCCcEEEEE
Q 023470 138 -EYFIVKDLNQDQKLEF---DHCSFDAVVCAVSVQYLQ-QPEK---VFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 -~~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l~~~~-~~~~---~l~~~~r~LkpgG~li~~ 193 (282)
.....+|+.....++. -...||+|+++++++... |.+. +++++.++|||||.|++.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0344566653322221 013599999999999874 5554 899999999999999876
No 162
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.26 E-value=3.3e-06 Score=70.14 Aligned_cols=101 Identities=23% Similarity=0.279 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCC-eEEEEcCCHHHHHhCCCCC----------ceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYK-RVVGHGLNAQELAKNPRLE----------YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~-~v~giD~s~~~l~~~~~~~----------~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+++.+|||.+.|.|....... .++ .|+-++-++..++.++-+. ..+.+|..+ .--.++|.|||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-VVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH-HHhcCCccccceEee
Confidence 358899999888886554432 444 9999999998877665332 344555421 112477999999986
Q ss_pred c---chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 A---VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~---~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
- +++------+++.+|++|+|||||.++--+.++
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 4 222111122568999999999999998776665
No 163
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.24 E-value=9.2e-06 Score=69.95 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCeEEEeCCcccchhhhhc---C--CCeEEEEcCCHHHHHhCC------CC---CceEEeecccccCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---S--YKRVVGHGLNAQELAKNP------RL---EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~--~~~v~giD~s~~~l~~~~------~~---~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
...+||||.||.|.++.... + ..+|.-.|.|+..+++.+ +. ..|...|.....++.--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 45789999999998775543 3 368999999997775433 22 2566777644333432234579999
Q ss_pred ecchhhccCCHH---HHHHHHHHcccCCcEEEEEE
Q 023470 163 CAVSVQYLQQPE---KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 163 ~~~~l~~~~~~~---~~l~~~~r~LkpgG~li~~~ 194 (282)
.+..++.++|-+ ..++-+.++|.|||+++.+-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999998744 47899999999999999884
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.18 E-value=5.8e-06 Score=73.68 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCC-CCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEF-DHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~-~~~s~D~v~~~~~ 166 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. +..+..+|+ .++.. .++.||+|++.=-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HHHHHhcCCCCeEEEECCC
Confidence 46889999999886543322 56799999999999976542 234666666 33221 2357999998621
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- .....+.++...++|++.+++++.
T Consensus 250 --r~-G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 250 --RR-GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred --CC-CccHHHHHHHHHcCCCeEEEEECC
Confidence 00 111223333444788888888854
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.17 E-value=1.4e-05 Score=67.70 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHHhhC--CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHh-CCCCCc---eEEeecccc--cCCCCCC
Q 023470 86 TLTNLYRQML--RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAK-NPRLEY---FIVKDLNQD--QKLEFDH 155 (282)
Q Consensus 86 ~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~-~~~~~~---~~~~d~~~~--~~l~~~~ 155 (282)
.+...+...- .++.+|||+|||+|.+.... .+..+|+|+|+++.|+.. .+.... +...++... ++++.+-
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4444444432 25678999999988653332 245789999999988753 333222 122222100 1222222
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..+|+++++..+ ++..+.+.|+| |.+++-+
T Consensus 142 ~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 142 ATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence 468888877653 47899999999 7766554
No 166
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.3e-06 Score=68.38 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhh---hc--CCCeEEEEcCCHHHHHhCCCCC------------------
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ---EV--SYKRVVGHGLNAQELAKNPRLE------------------ 138 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~---~~--~~~~v~giD~s~~~l~~~~~~~------------------ 138 (282)
..+..+.+.+...+.|+.++||+|+|+|..... .. ++...+|||.-++.++.++++.
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 466778888888899999999999998754322 11 4556699999888776544221
Q ss_pred ceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 139 YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 139 ~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+.++|. ....-+...||.|.+-. ...+..+++...|||||++++-+.
T Consensus 147 ~ivvGDg---r~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDG---RKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCc---cccCCccCCcceEEEcc------CccccHHHHHHhhccCCeEEEeec
Confidence 3445554 44444567899999874 335566888899999999998754
No 167
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=1e-06 Score=68.48 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=46.4
Q ss_pred cCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 149 QKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 149 ~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
...+|.++|+|+|.+.++++|+.- -..++++++|+|||||+|-+++|+-.+...
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~ 94 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDW 94 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHH
Confidence 466789999999999999999963 345999999999999999999998766543
No 168
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.15 E-value=7.4e-06 Score=67.97 Aligned_cols=111 Identities=9% Similarity=-0.070 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
...+.+...+... .++.+|||+|||+|..... .....+|+++|+++++++.++.+ ..+...|+. ..+
T Consensus 39 ~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l 115 (199)
T PRK10909 39 RVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFL 115 (199)
T ss_pred HHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHH
Confidence 3444455544332 3567999999998865432 22457999999999887644322 234445542 122
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHH--cccCCcEEEEEEcC
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFSN 196 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~~ 196 (282)
+...++||+|++.==.. -.-.+.+++.+.. +|+|+|.++++...
T Consensus 116 ~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22245799999973211 1122345555544 47999999998654
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.13 E-value=7.9e-06 Score=66.37 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=60.0
Q ss_pred CCCCCeEEEeCCcccc--hhhhhc-CCCeEEEEcCCHHHHHhC-------C----CCCceEEeeccccc-CCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVS--HLPQEV-SYKRVVGHGLNAQELAKN-------P----RLEYFIVKDLNQDQ-KLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~--~~~~~~-~~~~v~giD~s~~~l~~~-------~----~~~~~~~~d~~~~~-~l~~~~~s~D 159 (282)
..++.+|||+|||+|. ..+... +..+|+..|..+ .+... . ....+...+-.... .-....++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999998763 233333 678999999998 44321 1 11122233322110 0012346899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|+++.++..-...+.+++-+.++|+|+|.+++..+.+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999988888889999999999999988887654
No 170
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.07 E-value=1.2e-05 Score=68.84 Aligned_cols=98 Identities=23% Similarity=0.230 Sum_probs=66.4
Q ss_pred hCCCCCeEEEeCCcccch---hhhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CCCCcee
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FDHCSFD 159 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~~~s~D 159 (282)
.+.||.+|||.|.|.|.. ++.. .+..+|+..|+.++..+.|++ +..+...|+.. ..++ ..+..+|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~-~g~~~~~~~~~D 115 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE-EGFDEELESDFD 115 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC-G--STT-TTSEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec-ccccccccCccc
Confidence 567999999999998764 3322 277899999999987765542 23455666632 1121 1136799
Q ss_pred EEEecchhhccCCHHHHHHHHHHcc-cCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVL-KPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~~~~~ 197 (282)
.|+. -+++|..++..+.++| ||||++++-.|.-
T Consensus 116 avfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 116 AVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred EEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 9988 6789999999999999 9999998877763
No 171
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.06 E-value=1.8e-05 Score=68.24 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCC------CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC-------CCCC----------
Q 023470 83 FISTLTNLYRQMLR------PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN-------PRLE---------- 138 (282)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~-------~~~~---------- 138 (282)
.+..+...+.+..+ .+.+||--|||.|+..-... .+..+.|.|.|--|+-.. .+..
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44555555555544 24689999999987654332 578999999998886221 1000
Q ss_pred ------------ceEEeecccc----------------cCCCCC---CCceeEEEecchhhccCCHHHHHHHHHHcccCC
Q 023470 139 ------------YFIVKDLNQD----------------QKLEFD---HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187 (282)
Q Consensus 139 ------------~~~~~d~~~~----------------~~l~~~---~~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkpg 187 (282)
.+.+-|+... .++..+ .++||+|+++|.|.-.++.-+.|+.|+++||||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 1111111000 111122 368999999999999899999999999999999
Q ss_pred cEEE
Q 023470 188 GVFI 191 (282)
Q Consensus 188 G~li 191 (282)
|..|
T Consensus 196 G~WI 199 (270)
T PF07942_consen 196 GYWI 199 (270)
T ss_pred CEEE
Confidence 9554
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.8e-05 Score=63.93 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCCeEEEeCCcccchh--hhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEec--c
Q 023470 97 PGSEVLDLMSSWVSHL--PQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCA--V 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~--~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~--~ 165 (282)
.+..|+|+|||+|... +...+..+|+|+|+++++++.++.+. .+.+.|+ ... ...+|.++++ |
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~---~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhc---CCccceEEECCCC
Confidence 5678999999998643 33447789999999999998776543 4566665 344 3668899998 4
Q ss_pred hh--hccCCHHHHHHHHHHc
Q 023470 166 SV--QYLQQPEKVFAEVFRV 183 (282)
Q Consensus 166 ~l--~~~~~~~~~l~~~~r~ 183 (282)
.. .| .| ..++..+.+.
T Consensus 119 G~~~rh-aD-r~Fl~~Ale~ 136 (198)
T COG2263 119 GSQRRH-AD-RPFLLKALEI 136 (198)
T ss_pred cccccc-CC-HHHHHHHHHh
Confidence 43 34 23 3355555555
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.04 E-value=9.1e-06 Score=76.89 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhC------CCCCceEE--eecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKN------PRLEYFIV--KDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~------~~~~~~~~--~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+..+||||||.|.++.. ..+...++|+|++...+.++ .+..+..+ .+... ..--++++++|.|+.+|-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-ILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-HHHhcCcccccEEEEECC
Confidence 45689999998876544 34889999999998755432 12223222 22210 011267899999999875
Q ss_pred hhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 167 VQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 167 l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
=-|-.. -..+++.++++|||||.+.+.+.+..+.....
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 433321 14589999999999999999987766555433
No 174
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.02 E-value=1.4e-05 Score=74.28 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... ...+|+|+|+++.|++.++. +..+..+|.... ..+++.+++||+|++.-
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 356789999999886543332 45689999999999976543 234566665210 12233456799999742
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- ...-...+++.+.+ ++|++.++++..
T Consensus 371 P--r~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 P--RKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred C--CCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 1 01112456666554 899998888753
No 175
>PRK04148 hypothetical protein; Provisional
Probab=98.02 E-value=9.6e-06 Score=62.47 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
++.+|||||||.|..++.. ..+.+|+|+|+++..++.++.. ....+.|+.. .++.+ -..+|+|.+..-- ++.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~-p~~~~-y~~a~liysirpp---~el 90 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFN-PNLEI-YKNAKLIYSIRPP---RDL 90 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCC-CCHHH-HhcCCEEEEeCCC---HHH
Confidence 3578999999987533322 2578999999999998876654 3677777743 23333 2558999987531 122
Q ss_pred HHHHHHHHHcccCCcEEEEE
Q 023470 174 EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.++.+-+ |.-+++.
T Consensus 91 ~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 91 QPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHc--CCCEEEE
Confidence 33333443332 4556665
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.01 E-value=9.2e-06 Score=70.88 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|....... .+.+|+|+|++++|++.++. ...+..+|+ ..+++++-.+|.|+++-
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeC
Confidence 3467899999999886543322 34599999999999976543 234566666 55555432257888873
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.99 E-value=0.00011 Score=65.21 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchh---hh----hcCCCeEEEEcCCHHHHHhCCC------CCce----EEee
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHL---PQ----EVSYKRVVGHGLNAQELAKNPR------LEYF----IVKD 144 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~----~~~~~~v~giD~s~~~l~~~~~------~~~~----~~~d 144 (282)
..++.-...+...++++..++|+|||.+... .. ......++++|+|.++|+.+.. .... +.+|
T Consensus 61 ~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gd 140 (319)
T TIGR03439 61 EILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGT 140 (319)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEec
Confidence 3444555556667778889999999976541 11 1135789999999998854321 1112 3444
Q ss_pred cccccC-CCC--CCCceeEEEec-chhhccCCHH--HHHHHHHH-cccCCcEEEEEEcCchhHHHHHHhhhcCCCCc
Q 023470 145 LNQDQK-LEF--DHCSFDAVVCA-VSVQYLQQPE--KVFAEVFR-VLKPGGVFIVSFSNRMFYEKAISAWRDGTAYG 214 (282)
Q Consensus 145 ~~~~~~-l~~--~~~s~D~v~~~-~~l~~~~~~~--~~l~~~~r-~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 214 (282)
+..... ++- ......+++.. .+|.+++..+ .+|+++++ .|+|||.|++.+....-.......+.+..+.+
T Consensus 141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 432111 221 11234555555 5788886554 48999999 99999999997654434444455555544444
No 178
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.97 E-value=1.1e-05 Score=73.32 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=69.6
Q ss_pred HHhhCCCCCeEEEeCC--cccchhhhhcCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCc
Q 023470 91 YRQMLRPGSEVLDLMS--SWVSHLPQEVSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCS 157 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGc--G~~~~~~~~~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s 157 (282)
+...+. +.+|||+-| |..+..+...+..+|+++|+|...++.++++ ..++++|+-.- ....-....
T Consensus 212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 344444 899999999 4333333333445999999999999776533 24666665211 112223458
Q ss_pred eeEEEec---------chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCA---------VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~---------~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|+.- ....-..+...++..+.++|+|||.++++....
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999986 122223355668999999999999999886544
No 179
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.94 E-value=2.2e-05 Score=65.68 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCeEEEeCCcccc---hhhhhcC-CCeEEEEcCCHHHHHhCCCCC---------ceEE-eecccccCCC-CCCCceeEE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVS-YKRVVGHGLNAQELAKNPRLE---------YFIV-KDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~-~~~v~giD~s~~~l~~~~~~~---------~~~~-~d~~~~~~l~-~~~~s~D~v 161 (282)
+..+|||||.+.|. .++...+ ..+++.+|+++++.+.|+++. .... +|.. +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 67789999996553 3455555 779999999999987765321 2233 1221 2222 456899999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.-.. =.+-..++..+.+.|+|||.+++.
T Consensus 137 FIDad---K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDAD---KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCC---hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 98542 123466999999999999999986
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.93 E-value=2.2e-05 Score=67.99 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCC
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~ 153 (282)
....+.+.+.+ .+.++.+|||||||+|....... .+.+|+|+|+++.|++.++. +..+..+|+ ..+++
T Consensus 15 ~~~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDL 89 (258)
T ss_pred HHHHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCc
Confidence 34444444433 24467899999999886543322 35799999999999865442 234556666 55555
Q ss_pred CCCceeEEEecch
Q 023470 154 DHCSFDAVVCAVS 166 (282)
Q Consensus 154 ~~~s~D~v~~~~~ 166 (282)
+ .+|.|+++.-
T Consensus 90 ~--~~d~Vv~NlP 100 (258)
T PRK14896 90 P--EFNKVVSNLP 100 (258)
T ss_pred h--hceEEEEcCC
Confidence 3 4899999854
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.92 E-value=3.8e-05 Score=70.05 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhC--CCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 83 FISTLTNLYRQML--RPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
..+.+...+...+ .++.+|||+|||+|..... ...+.+|+|+|+++.+++.++.+ ..+..+|+.. .+
T Consensus 217 ~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~--~~ 294 (374)
T TIGR02085 217 VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAK--FA 294 (374)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH--HH
Confidence 3334444443332 2467899999998864332 23567999999999998755422 2455555521 11
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....++||+|++.==-. .-...+++.+. .++|++.++++..
T Consensus 295 ~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred HhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 11124599998862100 11134555554 4799999999863
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.89 E-value=7.5e-05 Score=64.45 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeecccccCCCCCCCcee---EEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQKLEFDHCSFD---AVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~~l~~~~~s~D---~v~~~~ 165 (282)
.++.+|||+|||+|....... .+..|+++|+++.+++.++.. ..+..+|. ..++++ ++| +|+++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcC
Confidence 467899999999987544432 346799999999998655422 23445555 455543 466 777764
Q ss_pred h
Q 023470 166 S 166 (282)
Q Consensus 166 ~ 166 (282)
-
T Consensus 103 P 103 (253)
T TIGR00755 103 P 103 (253)
T ss_pred C
Confidence 3
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=1.7e-05 Score=61.14 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCeEEEeCCcccchh-hh-hcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL-PQ-EVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~-~~-~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.+.+++|+|||.|... +. ......|.|+||.+++++.++.+. ++.++++ .++.+..+.||.++.+-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ldle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cchhccCCeEeeEEecC
Confidence 6788999999987644 22 236789999999999998876553 5667777 56666668899999883
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.87 E-value=3.5e-05 Score=71.59 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCeEEEeCCcccchhhhh--c-----CCCeEEEEcCCHHHHHh------CC---CCCceEEeecccccCCCCCCCceeEE
Q 023470 98 GSEVLDLMSSWVSHLPQE--V-----SYKRVVGHGLNAQELAK------NP---RLEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~--~-----~~~~v~giD~s~~~l~~------~~---~~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+..|||||||.|-..... . ...+|++++-|+.++.. .. +...++.+|+ +++..+ ..+|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lp-ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELP-EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHS-S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCC-CceeEE
Confidence 467999999988643211 1 35799999999764421 11 3346677777 777665 489999
Q ss_pred Eecchhhcc--CCHHHHHHHHHHcccCCcEEE
Q 023470 162 VCAVSVQYL--QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 162 ~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li 191 (282)
||-..=... .-..+.|..+.|.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997321111 234568999999999999874
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.87 E-value=2.7e-05 Score=63.65 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=62.4
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCe---------EEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKR---------VVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~---------v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~ 153 (282)
..++..|||--||+|..+... ..... ++|.|+++++++.++.+ ..+...|. ..+++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~ 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPL 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhccc
Confidence 346788999999988765332 13333 89999999999765432 24555666 77887
Q ss_pred CCCceeEEEec--chhhccC--CH----HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 154 DHCSFDAVVCA--VSVQYLQ--QP----EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~--~~l~~~~--~~----~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.++++|+|+++ +....-. +. ..+++++.++|++ ..+++...+.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 78899999999 3332221 11 2378999999999 4444444443
No 186
>PLN02823 spermine synthase
Probab=97.85 E-value=8.4e-05 Score=66.56 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=62.6
Q ss_pred CCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...+||.||+|.|..... ..+..+|+.+|+++++++.+++.. ++.+.|.. .-+...+++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccE
Confidence 3457899999997754432 224578999999999998765432 23333331 112333578999
Q ss_pred EEecchhhc--cC----CHHHHHH-HHHHcccCCcEEEEEE
Q 023470 161 VVCAVSVQY--LQ----QPEKVFA-EVFRVLKPGGVFIVSF 194 (282)
Q Consensus 161 v~~~~~l~~--~~----~~~~~l~-~~~r~LkpgG~li~~~ 194 (282)
|++-..=.. .+ --.++++ .+.+.|+|||.+++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 998732100 00 0235777 8999999999998764
No 187
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.82 E-value=8.3e-05 Score=65.71 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=63.2
Q ss_pred CeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHH-hCCCC---CceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELA-KNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~-~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
...+|+|.|.|..+.... .+.+|.++++....+. .+... ...+.+|.- .+.|- -|+|++-++|||.+|.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P~----~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTPK----GDAIWMKWILHDWTDE 252 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc--ccCCC----cCeEEEEeecccCChH
Confidence 567999999887654433 4556888988876553 33333 233444442 23442 3699999999999854
Q ss_pred --HHHHHHHHHcccCCcEEEEE
Q 023470 174 --EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 --~~~l~~~~r~LkpgG~li~~ 193 (282)
.++|++++..|+|||.+++.
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEE
Confidence 56999999999999999876
No 188
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.80 E-value=0.00017 Score=61.96 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=56.3
Q ss_pred CeEEEeCCcc---c--chhhh-hcCCCeEEEEcCCHHHHHhCC------CC--CceEEeecccc----------cCCCCC
Q 023470 99 SEVLDLMSSW---V--SHLPQ-EVSYKRVVGHGLNAQELAKNP------RL--EYFIVKDLNQD----------QKLEFD 154 (282)
Q Consensus 99 ~~vLDiGcG~---~--~~~~~-~~~~~~v~giD~s~~~l~~~~------~~--~~~~~~d~~~~----------~~l~~~ 154 (282)
...||||||. + ...++ ..+.++|+.+|+.+-.++.++ .. ..++.+|+... .-+.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~- 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF- 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC-
Confidence 3599999993 1 12222 248999999999997776443 22 35777777442 12333
Q ss_pred CCceeEEEecchhhccC---CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 155 HCSFDAVVCAVSVQYLQ---QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~---~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+ .+++..+|||++ ++..+++.+...|.||.+|+++-.
T Consensus 149 ~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2333 677788999996 567799999999999999999843
No 189
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.79 E-value=5.5e-05 Score=63.05 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccc-cCCC--CCCCceeE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD-QKLE--FDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~-~~l~--~~~~s~D~ 160 (282)
+..+||||||++|. .++... +.++|+.+|++++..+.++. ...+..++.... ..+. .+.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 45689999997664 334333 46899999999987765532 224455554211 1111 11358999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.-..= .+-...+..+.+.|+|||.+++.
T Consensus 125 VFiDa~K---~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 125 VFIDADK---RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEESTG---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcccc---cchhhHHHHHhhhccCCeEEEEc
Confidence 9987531 24456888899999999999987
No 190
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00011 Score=67.56 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=72.6
Q ss_pred HHhhCCCCC-eEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHh----C-CC--CCceEEeecccccCCCCCCCceeE
Q 023470 91 YRQMLRPGS-EVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAK----N-PR--LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 91 ~~~~~~~~~-~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~----~-~~--~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...+.+.. ++|-+|||........ .+...|+.+|+|+-.++. . +. ...+...|. ..+.|++++||+
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdi 117 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDI 117 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeE
Confidence 444555666 9999999976544333 277899999999865542 2 11 225666776 788999999999
Q ss_pred EEecchhhccC-C---------HHHHHHHHHHcccCCcEEEE
Q 023470 161 VVCAVSVQYLQ-Q---------PEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 161 v~~~~~l~~~~-~---------~~~~l~~~~r~LkpgG~li~ 192 (282)
|+--..++++- + ....+.+++|+|+|||+.+.
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 99999998883 1 12368999999999999764
No 191
>PLN02476 O-methyltransferase
Probab=97.78 E-value=5.2e-05 Score=65.87 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-----CCCCce
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-----FDHCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-----~~~~s~ 158 (282)
+..+|||||||+|.. ++... +..+|+++|.+++..+.++. ...+..++.. +.|+ ..+++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCC
Confidence 467899999987653 33323 36689999999987765542 2244455442 2221 123689
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|+.-.- -.+....++.+.+.|+|||.+++.
T Consensus 196 D~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99998642 123456889999999999999886
No 192
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.75 E-value=9.9e-06 Score=66.13 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=69.4
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
..++||+|+|-|....... -..+|++.+.|..|..+-++...-+...+ +..-.+-.||+|.|...|.-..++-+.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~----ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI----EWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh----hhhhcCceeehHHHHHHHHhhcChHHH
Confidence 4689999999776544433 34579999999999987655442222222 222234569999999999988899999
Q ss_pred HHHHHHcccC-CcEEEEEE
Q 023470 177 FAEVFRVLKP-GGVFIVSF 194 (282)
Q Consensus 177 l~~~~r~Lkp-gG~li~~~ 194 (282)
++.++.+|.| +|+++++.
T Consensus 189 L~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 189 LEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHhccCCCcEEEEE
Confidence 9999999999 89988763
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00012 Score=60.41 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=66.0
Q ss_pred hCCCCCeEEEeCC---cccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC---C--CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS---SWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK---L--EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc---G~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~---l--~~~~~s~D~v~~~ 164 (282)
.+.++..|+|+|| ||...++... ....|+|+|+.+-..- ....++++|+..... + .+....+|+|+|-
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI---PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC---CCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 4568899999999 5777666654 4556999999874321 114577788765411 1 2344558999976
Q ss_pred chh--------hccC--CH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSV--------QYLQ--QP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l--------~~~~--~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+- .|.. .. ..++.-+..+|+|||.+++.+-..
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 432 2221 11 236777788999999999886544
No 194
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.70 E-value=4.9e-05 Score=67.49 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC--------ce--EE-eecccc-cCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE--------YF--IV-KDLNQD-QKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~--------~~--~~-~d~~~~-~~l~~~~~s~D~v 161 (282)
++.+|||||||.|.. ++...++++++|+|+++.+++.|+.+. .. .. .+.... ..+..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999997643 333346789999999999887654221 11 11 111000 1111246789999
Q ss_pred Eec
Q 023470 162 VCA 164 (282)
Q Consensus 162 ~~~ 164 (282)
+|+
T Consensus 194 vcN 196 (321)
T PRK11727 194 LCN 196 (321)
T ss_pred EeC
Confidence 999
No 195
>PRK00536 speE spermidine synthase; Provisional
Probab=97.62 E-value=0.00026 Score=61.09 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCCCeEEEeCCcccchhhhhcCC-CeEEEEcCCHHHHHhCCCCCceEEeecccc-----cCC-CCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEVSY-KRVVGHGLNAQELAKNPRLEYFIVKDLNQD-----QKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~~~-~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-----~~l-~~~~~s~D~v~~~~~l 167 (282)
.+...+||=||.|-|..+....+. .+|+-+||++++++.+++......+.+.+. ..+ .-..++||+|++-..
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE- 148 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC-
Confidence 345689999999987766655432 499999999999987775211000101000 001 112368999998743
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
......+.++|.|+|||.++.....+
T Consensus 149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 149 ----PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred ----CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 44778899999999999999864443
No 196
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00051 Score=55.20 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHh-------CCCCCceEEeecccccCCCCCCCceeEEEec--
Q 023470 98 GSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAK-------NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~-------~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
...+||||||.|.. ++... ++.-..++|+++.+++. .+.....+..|+.. . +..+++|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~--~--l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS--G--LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh--h--hccCCccEEEECCC
Confidence 45689999998753 33322 67788999999998754 22333556666532 2 334889999888
Q ss_pred chh--------hcc-------CCH----HHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 165 VSV--------QYL-------QQP----EKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 165 ~~l--------~~~-------~~~----~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
++. +.+ .+- +.++..+-.+|.|.|.+++.........
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 221 111 121 2356666677889999998865544333
No 197
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.59 E-value=0.00042 Score=60.47 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCeEEEeCCcccchhhh--h-c-CCCeEEEEcCCHHHHHhCCCCCc----e----EEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLPQ--E-V-SYKRVVGHGLNAQELAKNPRLEY----F----IVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~--~-~-~~~~v~giD~s~~~l~~~~~~~~----~----~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
...+|||+|||.|..+-. . . ...+++++|.|+.|++.++.... . ....... ...++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR-DFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc-ccccCC--CCcEEEEe
Confidence 356899999986543211 1 1 35689999999999875543210 0 0011100 122332 23999999
Q ss_pred chhhccCC--HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++|..+++ ...+++.+++.+.+ .|++.-|+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99999987 22377777777665 66655444
No 198
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.56 E-value=0.00015 Score=63.83 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=45.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|....... .+.+|+|+|+++.|++.++. ...+..+|+ ...++ ..||+|+++
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaN 108 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVAN 108 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEec
Confidence 4577899999999887543332 45789999999999865432 234555555 33333 468999887
Q ss_pred c
Q 023470 165 V 165 (282)
Q Consensus 165 ~ 165 (282)
.
T Consensus 109 l 109 (294)
T PTZ00338 109 V 109 (294)
T ss_pred C
Confidence 3
No 199
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.55 E-value=0.00039 Score=57.63 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=55.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHh-------CC--CCCceEEeecccccCCCCCC
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAK-------NP--RLEYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~-------~~--~~~~~~~~d~~~~~~l~~~~ 155 (282)
...+.+.+.++..|+|+.||.|.+.... .+...|+++|+++.+++. .+ .......+|. ..+.. .
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~ 167 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-E 167 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----T
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-c
Confidence 3445566778999999999988654332 267889999999976632 21 1123344554 44433 6
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
+.+|.|++..- ..-..++..+.+++|+||.+.
T Consensus 168 ~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 88999999642 122357788999999999874
No 200
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.52 E-value=0.00019 Score=63.71 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCeEEEeCCcccchhhhhc----------CCCeEEEEcCCHHHHHhCC------C--CC--ceEEeecccccCCCC-CC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----------SYKRVVGHGLNAQELAKNP------R--LE--YFIVKDLNQDQKLEF-DH 155 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----------~~~~v~giD~s~~~l~~~~------~--~~--~~~~~d~~~~~~l~~-~~ 155 (282)
++.+|+|.+||+|.++.... ...+++|+|+++.++..++ . .. .....|.-. .... ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~--~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLE--NDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTT--SHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccc--ccccccc
Confidence 55689999999988764432 5679999999998765432 1 11 233444311 1111 24
Q ss_pred CceeEEEec--chhh-c----cC-C------------H-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 156 CSFDAVVCA--VSVQ-Y----LQ-Q------------P-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 156 ~s~D~v~~~--~~l~-~----~~-~------------~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..||+|+++ +... + .. + . -.++..+.+.||+||++.+.+|+.
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 789999999 3332 1 00 1 1 137899999999999999888864
No 201
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.51 E-value=0.00045 Score=56.91 Aligned_cols=110 Identities=8% Similarity=-0.022 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~ 150 (282)
..+.+...+...+ ++.+|||++||+|....... ....|+++|.++.+++.++.+ ..+...|+... ..
T Consensus 36 vrea~f~~l~~~~-~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 36 VRELFFNILRPEI-QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence 3444444444332 57899999999886543332 345899999999877543321 23444454210 01
Q ss_pred CCCCCCceeEEEec--chhhccCCHHHHHHHHH--HcccCCcEEEEEEcC
Q 023470 151 LEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSN 196 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~ 196 (282)
+.-....+|+|+.- +.- ...+.++..+. .+|+++|.++++...
T Consensus 115 ~~~~~~~~dvv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred hhccCCCceEEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 11112247777775 322 12344444443 468999999988553
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.51 E-value=0.0004 Score=63.44 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||++||+|..... ..+..+|+++|+++.+++.++.+. .+...|. ..+....+.||+|++.=-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECCC
Confidence 46899999998764433 234458999999999886544321 2344444 221111456999998521
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..+..++..+.+.+++||.++++.
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888888899999999984
No 203
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.51 E-value=0.00013 Score=59.63 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccc-------cCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-------QKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-------~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+||+.|. .+.... +..+|+|+|+.+..-- .......+|+... ..++-..+.+|+|+|-.+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccCcceeccccc
Confidence 4889999995443 444432 3589999999975110 1111222222111 111212368999999874
Q ss_pred hhccCC----H-------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYLQQ----P-------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~~~----~-------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.....+ . ...+.-+...|||||.+++.+-.
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 333321 1 22556667789999999887644
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.51 E-value=0.0005 Score=56.27 Aligned_cols=91 Identities=21% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCCC-eEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHh--------CCCCCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGS-EVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAK--------NPRLEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~-~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~--------~~~~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++... +++|||+|-|. .++-..+..+++.+|.+.+-++. .-.+.......+ ++ +....+||+|+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~ 120 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVT 120 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEE
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEE
Confidence 44444 89999998654 45555689999999999864421 112233344444 44 44568899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+--+ .....++.-+...|++||.+++-
T Consensus 121 aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 121 ARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred eehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 9754 47788999999999999998876
No 205
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.49 E-value=0.00045 Score=64.62 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=60.7
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCC-CCCCceeEEE-
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLE-FDHCSFDAVV- 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~-~~~~s~D~v~- 162 (282)
..++.+|||++||-|. +++... ....|++.|+++.-+...+ +..+..+...+. ..+. ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEEE
Confidence 3578999999996543 444444 3469999999987553322 122222222211 2221 2235799999
Q ss_pred ---ec--chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 163 ---CA--VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ---~~--~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+ .++..-++. .++|.++.+.|||||+|+-++-
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55 222222111 3489999999999999988753
No 206
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.48 E-value=4.3e-05 Score=66.71 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCCCeEEEeCC--cccchhhhhcCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMS--SWVSHLPQEVSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGc--G~~~~~~~~~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
.++.+|||+-| |.....+...+..+|+++|.|+.+++.++.+ ..++..|+..- ..+. ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCEEE
Confidence 36789999999 3222223333556899999999998765422 24555555211 1111 246899999
Q ss_pred ec---ch---hhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CA---VS---VQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~---~~---l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+- ++ ..-..+..+++..+.++|+|||.+++..-.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 86 11 111124556899999999999998876443
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.46 E-value=0.00042 Score=59.50 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=63.5
Q ss_pred hCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCC-c
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHC-S 157 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~-s 157 (282)
..+...+||=||-|.|....... +..+|+.+|+++..++.+++ +.+....|.. .-+.-..+ +
T Consensus 73 ~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~ 150 (246)
T PF01564_consen 73 LHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEK 150 (246)
T ss_dssp HSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-
T ss_pred cCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCc
Confidence 34467899999998775544433 35799999999998876542 1233444431 11111223 8
Q ss_pred eeEEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|+.-..-...+. -.++++.+.+.|+|||.+++...++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 999998643211111 2579999999999999999886544
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00093 Score=58.35 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=64.7
Q ss_pred CeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeEEEe
Q 023470 99 SEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+||-||-|.|..+... .+-.+++.+||+++.++.+++.. +..+.|.- .-+.-..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH--HHHHhCCCcCCEEEE
Confidence 58999999877655443 35689999999999998776432 22333321 112222347999999
Q ss_pred cchhhccCCH------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQP------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
-..=. . .+ ..+++.++|.|+++|.++....+
T Consensus 156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 76532 1 22 66999999999999999988444
No 209
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.36 E-value=0.00056 Score=60.03 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccc--chhhhhcCCCeEEEEcCCHHHHHhCC------CCC---ceEEeecccccCCCCCCCceeEEEec-
Q 023470 97 PGSEVLDLMSSWV--SHLPQEVSYKRVVGHGLNAQELAKNP------RLE---YFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~--~~~~~~~~~~~v~giD~s~~~l~~~~------~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
.+..|||+|||.| ..++...+..+|++++.|. |.+.++ ... ..+-+.+ +++.+| +..|+|++-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLP-Ek~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKI---EDIELP-EKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcc---ccccCc-hhccEEEecc
Confidence 4567999999765 5677777889999999986 332222 211 2334444 666665 569999986
Q ss_pred --chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 --VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 --~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..|-.-..++..+ .+.|.|||.|.++=++
T Consensus 252 MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 252 MGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred chhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 2222222333333 3459999999987543
No 210
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.35 E-value=0.00074 Score=57.90 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-C-----CCCc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-F-----DHCS 157 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~-----~~~s 157 (282)
+..+|||||+++|. .++... +..+|+.+|++++..+.|+. ...+..++.. +.++ + ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHHHhccccCCc
Confidence 45689999996554 233333 46799999999987655432 2244455442 2222 1 1368
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
||+|+.-.- =......+..+.+.|+|||.+++.
T Consensus 157 fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999998643 112345788889999999998875
No 211
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.31 E-value=0.0012 Score=55.00 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=61.6
Q ss_pred hCCCCCeEEEeCCccc---chhhhhc-CCCeEEEEcCCHHH----HHhC--CCCCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWV---SHLPQEV-SYKRVVGHGLNAQE----LAKN--PRLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~---~~~~~~~-~~~~v~giD~s~~~----l~~~--~~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|...| ++++... +...|+|++.|+.. +..+ +.+.--+..|.........--+.+|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 3558899999999433 4555554 47899999999954 3333 44443456665432222212347999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
--+ +-.+.+-++.++...||+||.+++.+.
T Consensus 150 DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 643 222334488889999999999999864
No 212
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=6.6e-05 Score=59.05 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCCeEEEeCCcc----cchhhhhcCCCeEEEEcCCHHHHHhCCC----C-----CceEEe--ecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSW----VSHLPQEVSYKRVVGHGLNAQELAKNPR----L-----EYFIVK--DLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~----~~~~~~~~~~~~v~giD~s~~~l~~~~~----~-----~~~~~~--d~~~~~~l~~~~~s~D~v 161 (282)
.+.+||++|.|. |..++...+...|.-.|-+++.++..++ + ....+. +... .......+.||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEE
Confidence 356799999983 3345555588899999999987743221 1 111011 1110 1112235689999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|..++..-...+..++.|++.|+|.|..++.-|.+
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999988777677889999999999999988776765
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.25 E-value=0.0014 Score=62.55 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=28.5
Q ss_pred CCCeEEEeCCcccchhhhhc---C--------CCeEEEEcCCHHHHHhCC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---S--------YKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~--------~~~v~giD~s~~~l~~~~ 135 (282)
...+|||.|||+|..+.... . ..+++|+|+++..+..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 34689999999887664332 1 257899999998876543
No 214
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.24 E-value=0.0031 Score=50.15 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=70.1
Q ss_pred HHHHHhhCC--CCCeEEEeCCcccchhhhhc----CCCeEEEEcCCHHHHHhC---CCCCceEEeeccccc-CC-CCCCC
Q 023470 88 TNLYRQMLR--PGSEVLDLMSSWVSHLPQEV----SYKRVVGHGLNAQELAKN---PRLEYFIVKDLNQDQ-KL-EFDHC 156 (282)
Q Consensus 88 ~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~----~~~~v~giD~s~~~l~~~---~~~~~~~~~d~~~~~-~l-~~~~~ 156 (282)
.+.+.+.+. .+.-|||+|.|+|....+.. +...+++++.|++-+..- ....+++.+|..... .+ ..++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence 334444443 35689999999986544332 567999999999866432 222345555542211 12 24567
Q ss_pred ceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEE
Q 023470 157 SFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~ 192 (282)
-||.|+|..=+-.++-. -+.++.+...|.+||.++-
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 79999999776666533 3489999999999999874
No 215
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0014 Score=54.06 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCC-CCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~l 167 (282)
.++.+||.||-|.|- ...+..+-.+=+-|+..++.+++-+. ..+.++....=...+ .++|++||.|+---.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 478999999998653 33344444455667888876655432 222322221000111 2568899999987666
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
++-.|...+.+.+.|+|||+|.+-+
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEE
Confidence 7888888999999999999998743
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.23 E-value=0.00021 Score=59.56 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCC---------------CCC--ceEEeecccccCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNP---------------RLE--YFIVKDLNQDQKLEFD 154 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~---------------~~~--~~~~~d~~~~~~l~~~ 154 (282)
+.++..++|||||.|...... .+..+.+||++.+...+.+. ... .+..+|+.........
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 557889999999998754332 25667999999985432221 111 2233333110000000
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
-...|+|+++.... -++....|.++..-||+|-+++
T Consensus 120 ~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 120 WSDADVVFVNNTCF-DPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp GHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEE
T ss_pred hcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEE
Confidence 03468999987642 2345567788888999987765
No 217
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.22 E-value=0.00047 Score=62.44 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC
Q 023470 85 STLTNLYRQMLR-PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 85 ~~~~~~~~~~~~-~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~ 135 (282)
..+...+.+.+. .+.+|||+|||+|....... ...+|+|+|++++|++.++
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 344444444443 23479999999885433222 4468999999999997655
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.20 E-value=0.00059 Score=62.01 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCC-CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccc-cCC
Q 023470 83 FISTLTNLYRQMLRP-GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQD-QKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~-~~l 151 (282)
..+.+.+.+.+.+.. +.+|||++||+|....... ...+|+|+|+|+.+++.++.+ ..+...|+... ..+
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 344455555554432 3579999999885433222 456899999999999765432 23555555211 011
Q ss_pred CC------------CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 152 EF------------DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 ~~------------~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- ....||+|+.-== . ..-.+.+++.+. +|++.++++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 00 0125899888310 0 001123444443 47888888864
No 219
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.19 E-value=0.00014 Score=59.51 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-c
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-Q 149 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~ 149 (282)
...+.+.+++....-++.+|||+-||+|..-.... +..+|+.+|.+++.+...+++ ......|.... .
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 45566666666542368899999999987544332 667999999999876543321 12333342110 1
Q ss_pred CCCCCCCceeEEEec--chhhccCCHHHHHHHHH--HcccCCcEEEEEEcCc
Q 023470 150 KLEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSNR 197 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~~ 197 (282)
.+.....+||+|++- +..... ...++..+. .+|+++|.++++....
T Consensus 107 ~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 107 KLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred hhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 121246789999986 221110 256777776 7899999999997654
No 220
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0029 Score=51.81 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCCeEEEeCC--cc-cchhhhhcCCCeEEEEcCCHHHH----HhCC--CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMS--SW-VSHLPQEVSYKRVVGHGLNAQEL----AKNP--RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGc--G~-~~~~~~~~~~~~v~giD~s~~~l----~~~~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+||=+|+ || .++.+...+...++|++.|+.+. ..+. .+.--+..|....+....--+.+|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 457899999999 64 35777766778999999998754 3333 333335566533222111124588888743
Q ss_pred hhhccCCH-HHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQP-EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ -++. +-+..++...||+||.+++++-
T Consensus 154 A---Qp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 154 A---QPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred C---CchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 2 1222 2378899999999999888754
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0071 Score=54.82 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCcc---cchhhhhcC--CCeEEEEcCCHHHHHhCC------CCC--ceEEeecccccCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMSSW---VSHLPQEVS--YKRVVGHGLNAQELAKNP------RLE--YFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGcG~---~~~~~~~~~--~~~v~giD~s~~~l~~~~------~~~--~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.++.+|||++++- ..++++.+. +..|+++|+|+.-+..-+ +.. .....|...........+.||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 4789999998843 345555553 466799999986443211 111 223333211011222223599998
Q ss_pred ec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- .+++--++ ..++|..+.++|||||.|+.++-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 75 33321111 12389999999999999998854
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.09 E-value=0.0016 Score=55.36 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC-------CCCCceEEeecccccCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN-------PRLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~-------~~~~~~~~~d~~~~~~l~~~ 154 (282)
+.+.+.+...+++..+|+|||||.--.. ....+...++|+||+..+++.- .-.....+.|+. . ..+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~---~-~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLL---S-DPP 168 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TT---T-SHT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeee---c-cCC
Confidence 3344444455667889999999953222 2223567999999999887532 223355666653 1 224
Q ss_pred CCceeEEEecchhhccCCHHH--HHHHHHHcccCCcEEEEEEcCchh
Q 023470 155 HCSFDAVVCAVSVQYLQQPEK--VFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~--~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
....|+.+..=+++.+..... .++-+-.+ . .=.+++++|-+..
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~-~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL-R-SPHVVVSFPTRSL 213 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS-C-ESEEEEEEES---
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh-C-CCeEEEecccccc
Confidence 578999999988887743322 23223332 2 3367888886544
No 223
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.08 E-value=0.00029 Score=55.48 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCeEEEeCCc--ccchhhhhcCCCeEEEEcCCHHHHHh-CCC-CCceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 98 GSEVLDLMSS--WVSHLPQEVSYKRVVGHGLNAQELAK-NPR-LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 98 ~~~vLDiGcG--~~~~~~~~~~~~~v~giD~s~~~l~~-~~~-~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
+.+++=+|+. |....+-..+..+|.-++.++--+.. .+. ...+...++. .++.-..++||.+.|..+++|+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~--~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA--KNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH--HHHHHhhccchhhheechhcccccc
Confidence 4567777875 44444444466778888876522211 111 1111112221 12222347899999999999983
Q ss_pred ---CH------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 ---QP------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ---~~------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|| ...+.++.++|||||.|++.+|-
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 22 34889999999999999999884
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.94 E-value=0.0057 Score=51.16 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=59.3
Q ss_pred CCCeEEEeCC--cccchh-hhhc-CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccc-cC-C-CCCCCceeE
Q 023470 97 PGSEVLDLMS--SWVSHL-PQEV-SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQD-QK-L-EFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~-~~~~-~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~-~~-l-~~~~~s~D~ 160 (282)
...++||||. |.+... +... ...+|+++|+++...+... ....++++..... .+ + ..+.++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5678999998 643322 2222 5789999999987654432 2234555544321 11 1 135688999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++.-. +=.+-.....++.++||+||.+++.
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 98742 1112235788999999999999986
No 225
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.004 Score=54.34 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhhCCC------CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHH-------hCCCCC-----ceE-
Q 023470 82 GFISTLTNLYRQMLRP------GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELA-------KNPRLE-----YFI- 141 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~------~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~-------~~~~~~-----~~~- 141 (282)
..+..+.+.+....++ ..+||--|||.|+...... .+..+.|=+.|--|+- .++... .|+
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3455566666666554 5679999999987654433 5567777788876651 111100 000
Q ss_pred -----------------------------------EeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccC
Q 023470 142 -----------------------------------VKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKP 186 (282)
Q Consensus 142 -----------------------------------~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkp 186 (282)
.+|+..-...+-..++||+|+.++.|....+.-+.++.|..+|||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP 288 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence 011100000111124799999999998888999999999999999
Q ss_pred CcEEEEE
Q 023470 187 GGVFIVS 193 (282)
Q Consensus 187 gG~li~~ 193 (282)
||..+-.
T Consensus 289 GGvWiNl 295 (369)
T KOG2798|consen 289 GGVWINL 295 (369)
T ss_pred CcEEEec
Confidence 9998744
No 226
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.72 E-value=0.0035 Score=54.41 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=52.3
Q ss_pred CeEEEeCCcc----cchhhhh-cCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 99 SEVLDLMSSW----VSHLPQE-VSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 99 ~~vLDiGcG~----~~~~~~~-~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+|+=||||- .-.++.. ..+..|+++|+++++++.+++ ...+...|. .+.+..-..||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEEE
Confidence 5899999992 3334432 256789999999988765532 224555565 334433467998887
Q ss_pred cchhh-ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQ-YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..... --.+..+++.++.+.++||+.+++-..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 75433 223778899999999999999887644
No 227
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.72 E-value=0.0026 Score=55.97 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred CCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeeccccc-CCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQ-KLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~-~l~~~~~s~D~v~~~ 164 (282)
.++..+||.+||.|.+.. ... +..+|+|+|.++.|++.++.. ..++..++.... .++-.-.++|+|++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 467899999999876543 333 258999999999999766532 234444442110 111111279999998
Q ss_pred chh
Q 023470 165 VSV 167 (282)
Q Consensus 165 ~~l 167 (282)
..+
T Consensus 98 LGv 100 (296)
T PRK00050 98 LGV 100 (296)
T ss_pred CCc
Confidence 654
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.52 E-value=0.0058 Score=60.40 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=48.1
Q ss_pred eEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC--CCCceeEEEec--chhhcc--CCHHHHHHH---HH
Q 023470 120 RVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF--DHCSFDAVVCA--VSVQYL--QQPEKVFAE---VF 181 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~--~~~s~D~v~~~--~~l~~~--~~~~~~l~~---~~ 181 (282)
+++|+|+++++++.++.+ ..+..+|+ .+++. ..+++|+|+++ +.-..- .+...+.++ ..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 699999999999766532 23556666 44443 33579999999 332222 123334333 44
Q ss_pred HcccCCcEEEEEEcCchhH
Q 023470 182 RVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 182 r~LkpgG~li~~~~~~~~~ 200 (282)
+...+|+.+++.+++..+.
T Consensus 335 k~~~~g~~~~llt~~~~l~ 353 (702)
T PRK11783 335 KQQFGGWNAALFSSSPELL 353 (702)
T ss_pred HHhCCCCeEEEEeCCHHHH
Confidence 4445999998877765443
No 229
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.52 E-value=0.0055 Score=55.81 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=60.1
Q ss_pred CeEEEeCCcccchhhhhc----CCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQEV----SYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~----~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+|||+.||+|..-.+.. +..+|+++|+++++++..+.+. .+...|.. .-+......||+|..-=
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~--~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA--NVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH--HHHHHhCCCCCEEEeCC-
Confidence 689999999876543322 3468999999998875443221 23333331 11221235699998753
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
. ..+..++..+.+.+++||.++++.
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 1 355679999999999999999983
No 230
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.51 E-value=0.0014 Score=48.46 Aligned_cols=39 Identities=21% Similarity=0.728 Sum_probs=30.0
Q ss_pred ceeEEEecchhhccC------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 157 SFDAVVCAVSVQYLQ------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 157 s~D~v~~~~~l~~~~------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.||+|+|..+.-|+. ....+++.+++.|+|||.|+++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999998877663 334599999999999999999943
No 231
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.50 E-value=0.0053 Score=56.96 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=61.6
Q ss_pred eEEEeCCcccchhhhhcCCCeEEEEcCCHH----H--HHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 100 EVLDLMSSWVSHLPQEVSYKRVVGHGLNAQ----E--LAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~~~~~~v~giD~s~~----~--l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
.|+|+..|.|.+.++.... .|.....-+. - +-..++.......-. +.++.-+.+||+|.+..++.+..
T Consensus 368 NVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWC---E~fsTYPRTYDLlHA~~lfs~~~~r 443 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWC---EAFSTYPRTYDLLHADGLFSLYKDR 443 (506)
T ss_pred eeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhcccchhccchh---hccCCCCcchhheehhhhhhhhccc
Confidence 5999999998877776522 2333333322 1 112233332222223 66776679999999998887765
Q ss_pred -CHHHHHHHHHHcccCCcEEEEEE
Q 023470 172 -QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 172 -~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+.+.++-|+-|+|+|||.++|-.
T Consensus 444 C~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 444 CEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred ccHHHHHHHhHhhcCCCceEEEec
Confidence 56779999999999999999874
No 232
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.49 E-value=0.034 Score=50.68 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCCCCceeEEEecchhhccCCH--------------------------------------HHHHHHHHHcccCCcEEEE
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQP--------------------------------------EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~--------------------------------------~~~l~~~~r~LkpgG~li~ 192 (282)
--||.+|.++++|++++||+... ..+|+.-++-|.|||++++
T Consensus 156 RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 156 RLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred cccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 34788999999999999999521 1244555667899999999
Q ss_pred EEcCc
Q 023470 193 SFSNR 197 (282)
Q Consensus 193 ~~~~~ 197 (282)
++.++
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 98765
No 233
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.47 E-value=0.015 Score=48.74 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.0
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHH---hC-----CCCCceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELA---KN-----PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~---~~-----~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+++|||+|-|. .++-..+..+|+-+|...+-+. .. -.+..+....+ +++.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeehc
Confidence 5799999998653 4444458888999999875332 11 12233444444 444321111999999643
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
.+...++.-+...+|+||.+++
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchh
Confidence 4667788889999999998764
No 234
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0066 Score=52.16 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCC-ceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHC-SFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~-s~D~v~~~ 164 (282)
+.++..|||||+|.|....... .+.+|+++++++.+++.-++ +...+.+|+ ...+++.- .++.|+++
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaN 102 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEc
Confidence 3457899999999987655443 67789999999998864332 234566676 55555432 46778877
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.37 E-value=0.021 Score=50.88 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCCCeEEEeCCcc---cchhhhhcCCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~---~~~~~~~~~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.++.++|||||+. ...+.. .+.+|+|||.++ |-..-.. .......+.. ...| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~--rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~f--r~~p-~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR--RGMFVTAVDNGP-MAQSLMDTGQVEHLRADGF--KFRP-PRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH--cCCEEEEEechh-cCHhhhCCCCEEEEeccCc--ccCC-CCCCCCEEEEecc----
Confidence 5788999999944 444444 567999999665 2221122 2222222221 2222 1567999999765
Q ss_pred CCHHHHHHHHHHcccCC--cEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPG--GVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~Lkpg--G~li~~ 193 (282)
..|..+.+-+.++|..| ...|++
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 36778888888888776 345655
No 236
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.29 E-value=0.0055 Score=52.50 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC----CC-----CCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN----PR-----LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~----~~-----~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+++...|||+|.|+|....... .+.+|+++++++.|++.- ++ .-....+|. ...++ -.||++|+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d~--P~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTDL--PRFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCCC--cccceeec
Confidence 46788999999999997654433 678999999999998532 11 124566776 33333 36899998
Q ss_pred c
Q 023470 164 A 164 (282)
Q Consensus 164 ~ 164 (282)
+
T Consensus 130 N 130 (315)
T KOG0820|consen 130 N 130 (315)
T ss_pred c
Confidence 5
No 237
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.22 E-value=0.015 Score=52.00 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=66.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s 157 (282)
..+.+...+|.+|||+=||.|.+.... .+...|+++|+++.+++..++ ....+.+|. ......-+.
T Consensus 180 ~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~ 256 (341)
T COG2520 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGV 256 (341)
T ss_pred HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhcccc
Confidence 345556667999999999988654332 234459999999987643221 123455565 444433378
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|-|++... .+-..++..+.+.+|+||.+-+-
T Consensus 257 aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 257 ADRIIMGLP----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred CCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEE
Confidence 999999754 24456888899999999998765
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.03 Score=45.43 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=55.7
Q ss_pred hCCCCCeEEEeCC--c-ccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEe-ecccc-------cCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMS--S-WVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVK-DLNQD-------QKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G-~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~-d~~~~-------~~l~~~~~s~D~v 161 (282)
.+.|+.+|||+|| | |.....+.. +...|.|+|+-.-.- -.+ ...+.+ |+.+. +. +++..+|+|
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p--~~G-a~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV 140 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP--PEG-ATIIQGNDVTDPETYRKIFEA--LPNRPVDVV 140 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC--CCC-cccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence 4678999999999 4 333333322 788999999864110 001 112222 33322 22 357889999
Q ss_pred Eecchhhcc----CCHHH-------HHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYL----QQPEK-------VFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~----~~~~~-------~l~~~~r~LkpgG~li~~~ 194 (282)
+|-..-... .|... ++.-....++|+|.++..+
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 998643222 12222 3444456678999999875
No 239
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.016 Score=47.24 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l 151 (282)
..+.+.+++...--.+.++||+-+|+|..-.... +..+++.+|.+.+.+...++ .......|.. .-+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L 106 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RAL 106 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHH
Confidence 4444555544421267899999999876544433 67899999999987643322 2233344432 111
Q ss_pred C-CC-CCceeEEEec--chhhccCCHHHHHHH--HHHcccCCcEEEEEEcCc
Q 023470 152 E-FD-HCSFDAVVCA--VSVQYLQQPEKVFAE--VFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 152 ~-~~-~~s~D~v~~~--~~l~~~~~~~~~l~~--~~r~LkpgG~li~~~~~~ 197 (282)
. .. .+.||+|+.- +.- -+-+....+.. -..+|+|+|.++++....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1 11 2259999986 321 11122333333 567899999999996644
No 240
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.07 E-value=0.01 Score=48.41 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC---ceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.+.+|||+|+|.|. ..+...+...|++.|+.+..+...+-+. .+.+.... .++-.++..||+++...++..-+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~--~d~~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH--ADLIGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee--ccccCCCcceeEEEeeceecCch
Confidence 57899999998764 2333347789999999987654332221 11111111 22223677899999998765544
Q ss_pred CHHHHHHHHHHcccCCcE-EEEEEcCchhHH
Q 023470 172 QPEKVFAEVFRVLKPGGV-FIVSFSNRMFYE 201 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~-li~~~~~~~~~~ 201 (282)
--.+++. +.+.|+..|. +++-.|++....
T Consensus 157 ~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 157 EADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 5555777 5555555554 555567664433
No 241
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.035 Score=51.54 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhCC--CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 83 FISTLTNLYRQMLR--PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
..+.+.....+.+. ++.++||+=||.|.+-.... ...+|+|+|+++++++.++.+ ..+..++. +.+
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a---e~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA---EEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHH
Confidence 34444444444444 56789999999776544433 788999999999999765432 24444444 333
Q ss_pred CC---CCCceeEEEecchhhccCCHH------HHHHHHHHcccCCcEEEEEEcCchhHHHHHHhh
Q 023470 152 EF---DHCSFDAVVCAVSVQYLQQPE------KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207 (282)
Q Consensus 152 ~~---~~~s~D~v~~~~~l~~~~~~~------~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 207 (282)
.. ....+|+|+. ||+ .+++.+.+ ++|-.++++++ |+.........+
T Consensus 354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRDl~~L 408 (432)
T COG2265 354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC-NPATLARDLAIL 408 (432)
T ss_pred hhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC-CHHHHHHHHHHH
Confidence 21 2346899988 443 34554444 57788889985 454444443333
No 242
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.87 E-value=0.047 Score=45.29 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=58.8
Q ss_pred CCCeEEEeCC--c-ccchhh---hhc-CCCeEEEEcCCHHHH-----Hh--CCCCCceEEeeccccc---CCC-CC-CCc
Q 023470 97 PGSEVLDLMS--S-WVSHLP---QEV-SYKRVVGHGLNAQEL-----AK--NPRLEYFIVKDLNQDQ---KLE-FD-HCS 157 (282)
Q Consensus 97 ~~~~vLDiGc--G-~~~~~~---~~~-~~~~v~giD~s~~~l-----~~--~~~~~~~~~~d~~~~~---~l~-~~-~~s 157 (282)
+...|+|+|. | .....+ ... +.++|+|+|+..... +. ......+++++....+ .+. .. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5678999999 3 222222 223 678999999954322 22 1144567777775431 111 11 112
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHH---HHhhhcCCCCcchhhHHHHHHhhCCCCch
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA---ISAWRDGTAYGRVQLVVQYFQCVEGYTNP 232 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ 232 (282)
- ++++-.+-|.-.+....|+....++++|+++++........... -..|.. +......+.+|+.....|...
T Consensus 112 ~-vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~--g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 112 P-VLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP--GNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp S-EEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEEEE
T ss_pred c-eEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh--hhHHHHHHHHHHHHCCCcEec
Confidence 2 34444554444577888999999999999999875432221111 123432 222335566777765556543
No 243
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.81 E-value=0.028 Score=50.19 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.3
Q ss_pred hhCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 93 QMLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
..+.|+.+|+=+|+| .|.. ++.. -+.+|+++|.|++-++.+++...-.+.+........--.+.+|+|+..-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 346688999999997 3322 2332 34999999999998887776642222222111122111123999988654
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+....+.||+||.+++.
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEE
Confidence 56788999999999999876
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.61 E-value=0.012 Score=51.72 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCC-------CC-ceEEeecccc----cCCCCCCCceeEEE
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPR-------LE-YFIVKDLNQD----QKLEFDHCSFDAVV 162 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~-------~~-~~~~~d~~~~----~~l~~~~~s~D~v~ 162 (282)
..++||||||... .+.....+++++|+|+++..++.|+. .. ...+...... ..+..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 4679999999533 23333358999999999988765432 22 1222222111 12223446899999
Q ss_pred ecch
Q 023470 163 CAVS 166 (282)
Q Consensus 163 ~~~~ 166 (282)
|+==
T Consensus 183 CNPP 186 (299)
T PF05971_consen 183 CNPP 186 (299)
T ss_dssp E---
T ss_pred cCCc
Confidence 9843
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.044 Score=46.21 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=64.4
Q ss_pred HHHHHHHhh--CCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCC---CCCCCc
Q 023470 86 TLTNLYRQM--LRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKL---EFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~--~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l---~~~~~s 157 (282)
.+...+..+ ..++..+||+|+-+|.+.. .+.+...|+|+|..-.++... +.....++..-++...+ .+. +.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cC
Confidence 344444443 3467889999996655433 333678999999998776432 22222222221111222 122 35
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.|+++|--++. ....+|-.+..+|+|+|.++.-+
T Consensus 145 ~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 145 PDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 78888876543 44789999999999999987654
No 246
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.45 E-value=0.059 Score=48.44 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCCCCCceeEEEecchhhccCCH------------------------H---------------HHHHHHHHcccCCcEE
Q 023470 150 KLEFDHCSFDAVVCAVSVQYLQQP------------------------E---------------KVFAEVFRVLKPGGVF 190 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~~~~~------------------------~---------------~~l~~~~r~LkpgG~l 190 (282)
.--+|++|.|+++|++++||+... + .+|+.-++=|+|||++
T Consensus 100 ~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m 179 (334)
T PF03492_consen 100 GRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRM 179 (334)
T ss_dssp S--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred hccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEE
Confidence 334789999999999999999421 1 1455556678999999
Q ss_pred EEEEcCc
Q 023470 191 IVSFSNR 197 (282)
Q Consensus 191 i~~~~~~ 197 (282)
++.+.++
T Consensus 180 vl~~~gr 186 (334)
T PF03492_consen 180 VLTFLGR 186 (334)
T ss_dssp EEEEEE-
T ss_pred EEEEeec
Confidence 9987654
No 247
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.30 E-value=0.046 Score=44.98 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHH
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQ 129 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~ 129 (282)
+...+.|||||.|..+ +.+++..-+.|++|-.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 4567999999987654 44558889999998753
No 248
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.04 E-value=0.029 Score=43.57 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=41.4
Q ss_pred eEEEEcCCHHHHHhCCCC------C-c-eEEeecccccCCC--CCCCceeEEEecchhhccC--------CHH---HHHH
Q 023470 120 RVVGHGLNAQELAKNPRL------E-Y-FIVKDLNQDQKLE--FDHCSFDAVVCAVSVQYLQ--------QPE---KVFA 178 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~------~-~-~~~~d~~~~~~l~--~~~~s~D~v~~~~~l~~~~--------~~~---~~l~ 178 (282)
+|+|+||-+++++..+.. . . ..+.+.- +.+. .+.+++|+++.+.. ++| .++ .+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH--e~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH--ENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G--GGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH--HHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 589999999988654321 1 1 1122221 3332 23358999998865 443 223 3899
Q ss_pred HHHHcccCCcEEEEE
Q 023470 179 EVFRVLKPGGVFIVS 193 (282)
Q Consensus 179 ~~~r~LkpgG~li~~ 193 (282)
.+.+.|+|||.+.+.
T Consensus 77 ~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 77 AALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEE
Confidence 999999999999876
No 249
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.65 E-value=0.17 Score=42.81 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=59.5
Q ss_pred hCCCCCeEEEeCCccc---chhhhhc-CCCeEEEEcCCHH----HHHhCCCCCc--eEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWV---SHLPQEV-SYKRVVGHGLNAQ----ELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~---~~~~~~~-~~~~v~giD~s~~----~l~~~~~~~~--~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+++++.+||-+|++.| ++..... +..-|++++.|.. .+..+++..+ -++.|..-....-..-.-+|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 4578999999999544 3444433 6678999999863 3344444332 345554211111111235677776
Q ss_pred cchhhccCCHHH-HHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEK-VFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~-~l~~~~r~LkpgG~li~~~~~ 196 (282)
--. -+|... +.-++...||+||.+++++-.
T Consensus 233 Dva---qpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 DVA---QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred cCC---CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 432 122222 556788899999999998643
No 250
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=0.18 Score=43.46 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccch---hhhh-cCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQE-VSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~-~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.|+.+|||-|.|.|.. +++. .+..+++-.|+-..-.+++. .+..+...|+.. ......+..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~-~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG-SGFLIKSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc-CCccccccccceE
Confidence 56999999999987653 3332 37789999999765443332 233556666643 2334445678888
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+. -++.|..++-.++.+||.+|.-+++
T Consensus 182 FL-----DlPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 182 FL-----DLPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred EE-----cCCChhhhhhhhHHHhhhcCceEEe
Confidence 77 5678888999999999998854444
No 251
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.64 E-value=0.11 Score=42.22 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=58.2
Q ss_pred CeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 99 SEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 99 ~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
..+.|+|+|+|- ..+.. ...+|++++.++.-.+.+.++. +.+.+|. .+..| ...|+|+|-..=-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhH
Confidence 678999998763 44443 3679999999998766655442 3345554 55555 4579998864311
Q ss_pred cc--CCHHHHHHHHHHcccCCcEEE
Q 023470 169 YL--QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 169 ~~--~~~~~~l~~~~r~LkpgG~li 191 (282)
.+ .....+++.+...||.+|.++
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 11 233448888888999999876
No 252
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.53 E-value=0.16 Score=46.07 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhCCC-CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC
Q 023470 82 GFISTLTNLYRQMLRP-GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~ 135 (282)
...+.+.+.+.+.+.. +..|||+-||.|....... ...+|+|+|+++.+++.|+
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 3444555555666553 3479999999876443332 5689999999999997654
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.52 E-value=0.15 Score=45.72 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc--C-CCeEEEEcCCHHHHHhCCCCC---------------ceEEeecccccC-CCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--S-YKRVVGHGLNAQELAKNPRLE---------------YFIVKDLNQDQK-LEFDH 155 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~~---------------~~~~~d~~~~~~-l~~~~ 155 (282)
++.-.+||-+|.|-|..+.+.. | ..+|+-+|.+|+|++.++... ..+..|. .+ +.-..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA---f~wlr~a~ 363 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA---FQWLRTAA 363 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH---HHHHHhhc
Confidence 3445679999998776555443 4 679999999999998776321 1112221 11 12233
Q ss_pred CceeEEEecchhhccCCH----------HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 156 CSFDAVVCAVSVQYLQQP----------EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~----------~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.||+||.-. +|| .++..-+.|.|+++|.+++.-..+
T Consensus 364 ~~fD~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 DMFDVVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ccccEEEEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 5799988753 233 346778889999999999875544
No 254
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.35 E-value=0.016 Score=46.40 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=33.8
Q ss_pred eEEEeCCcccc-hhhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCCCCCCCceeEEEec
Q 023470 100 EVLDLMSSWVS-HLPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 100 ~vLDiGcG~~~-~~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
.|+|+.||.|. .+.-.....+|+++|+++..++.++.+ ..++.+|.... ..+.... .+|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~-~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNK-IFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccc-cccEEEEC
Confidence 58999998654 333333577999999999887655432 35666665321 1122111 17888876
No 255
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.08 E-value=0.066 Score=46.32 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCCeEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHhCC-CC--CceE----------Eeeccccc---CCCC-CCC
Q 023470 96 RPGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAKNP-RL--EYFI----------VKDLNQDQ---KLEF-DHC 156 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~~~-~~--~~~~----------~~d~~~~~---~l~~-~~~ 156 (282)
-.+.+|||+|||.+.. .+.......++..|.|.+.++... .+ ..+. +..+.. . ++.+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~-s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILN-SLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccc-cccccchhhhcc
Confidence 3678999999986532 222224478999999987763211 00 0000 000000 1 1110 012
Q ss_pred --ceeEEEecchhhccCCHHHH-HHHHHHcccCCcEEEEE
Q 023470 157 --SFDAVVCAVSVQYLQQPEKV-FAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 157 --s~D~v~~~~~l~~~~~~~~~-l~~~~r~LkpgG~li~~ 193 (282)
.||+|.++.++-........ .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 68999999888777766665 67777888999988765
No 256
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.04 E-value=0.14 Score=44.98 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCccc---chhhhhcC-CCeEEEEcCCHHHHHhCC------CCCceEE--eecccccCC-C-CCCCceeE
Q 023470 95 LRPGSEVLDLMSSWV---SHLPQEVS-YKRVVGHGLNAQELAKNP------RLEYFIV--KDLNQDQKL-E-FDHCSFDA 160 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~---~~~~~~~~-~~~v~giD~s~~~l~~~~------~~~~~~~--~d~~~~~~l-~-~~~~s~D~ 160 (282)
..++..|||+++|-| .+++..+. ...|++.|++..-+..-+ +.....+ .|. ... + .....||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccch
Confidence 347889999999644 34555543 689999999987553211 1222222 233 222 1 22346999
Q ss_pred EEec------chhhccCCH----------------HHHHHHHHHcc----cCCcEEEEEEc
Q 023470 161 VVCA------VSVQYLQQP----------------EKVFAEVFRVL----KPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~------~~l~~~~~~----------------~~~l~~~~r~L----kpgG~li~~~~ 195 (282)
|+.- .++..-++. .++|+++.+.+ ||||+++.++-
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9974 233332221 23799999999 99999998864
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.98 E-value=0.045 Score=42.39 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=25.5
Q ss_pred eEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~ 134 (282)
.+||+|||.|... +...+..+|+++|+++.+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l 38 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEIL 38 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHH
Confidence 3899999877542 3333556899999999887543
No 258
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.84 E-value=0.069 Score=44.53 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=44.9
Q ss_pred EEEeCC--cc-cchhhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCc-eeEEEecchh
Q 023470 101 VLDLMS--SW-VSHLPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCS-FDAVVCAVSV 167 (282)
Q Consensus 101 vLDiGc--G~-~~~~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s-~D~v~~~~~l 167 (282)
|.|||| |. +.++.......+++++|+++.-++.++. ......+|.. ..+ +.+. .|+|+...+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~l--~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EVL--KPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--ccc--CCCCCCCEEEEecCC
Confidence 689999 53 2344444455689999999987765542 1234444431 223 3333 7887777431
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
- .-..+.|.+....++....|++.
T Consensus 77 G--~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 77 G--ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp H--HHHHHHHHHTGGGGTT--EEEEE
T ss_pred H--HHHHHHHHhhHHHhccCCeEEEe
Confidence 0 01244666666666665566665
No 259
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.82 E-value=0.25 Score=40.52 Aligned_cols=24 Identities=50% Similarity=0.800 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
....++.+++++.|||||.+++..
T Consensus 143 ~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 143 ATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred chHHHHHHHHHHhcCCCcEEEEEe
Confidence 355679999999999999998874
No 260
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.15 Score=46.12 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred eEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec--chhhcc--CCHH----HHHHHHHH
Q 023470 120 RVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA--VSVQYL--QQPE----KVFAEVFR 182 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~l~~~--~~~~----~~l~~~~r 182 (282)
.++|+|+++.+++.|+.+ ..|.+.|+ ..+.-+-+.+|+|||+ +...-- .... .+.+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 377999999999766533 36677777 5555333789999999 332211 1122 24556667
Q ss_pred cccCCcEEEEEEc
Q 023470 183 VLKPGGVFIVSFS 195 (282)
Q Consensus 183 ~LkpgG~li~~~~ 195 (282)
.++--++++++..
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 7777778887743
No 261
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.62 E-value=0.16 Score=46.34 Aligned_cols=98 Identities=20% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCCCeEEEeCC---cccchhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCC---CCCCceeEEE
Q 023470 96 RPGSEVLDLMS---SWVSHLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLE---FDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGc---G~~~~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~---~~~~s~D~v~ 162 (282)
+++.+|||+++ |-..+++..+ ....|++.|.+..-+..-. +..+.++..... ..+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-REFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc-ccccccccCc-ccceee
Confidence 36889999988 4456777765 5679999999876553221 223444554432 2222 333 788887
Q ss_pred ec----c--hhh----------------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA----V--SVQ----------------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~----~--~l~----------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- . ++. +..-..++|..+...+|+||+|+-++-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 43 2 111 111113478889999999999998753
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.60 E-value=0.35 Score=45.91 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCCeEEEeCCcc-cchh--hhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeeccccc--------CCC----------CC
Q 023470 97 PGSEVLDLMSSW-VSHL--PQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQ--------KLE----------FD 154 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~--~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~--------~l~----------~~ 154 (282)
++.+|+=+|||. |... ....-+.+|+++|.+++-++.++... .+...+..... .+. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 578999999984 2211 12224568999999998887766543 22222221100 000 01
Q ss_pred C--CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 155 H--CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 155 ~--~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ +.+|+|+.+-....-+.+..+.+++.+.+||||.++..
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 1 35899999876544444544569999999999998743
No 263
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.57 E-value=0.39 Score=43.92 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=60.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc----cCC-CC-CCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD----QKL-EF-DHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~----~~l-~~-~~~s~D~v~~ 163 (282)
.+.++.+||.+|||. |.. ++...+..+++++|.++++++.++......+.+.... ..+ .+ ....+|+|+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 345778999999974 333 2333343469999999988876654411112221110 001 11 2236898888
Q ss_pred cchh-----------hcc----CCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSV-----------QYL----QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l-----------~~~----~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- .|+ .+....+.++.+.|+|+|.++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 6321 121 35567899999999999999865
No 264
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.39 E-value=0.21 Score=38.85 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=28.1
Q ss_pred CCCCeEEEeCCcccc---hhhh----hcCCCeEEEEcCCHHHHHhC
Q 023470 96 RPGSEVLDLMSSWVS---HLPQ----EVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~----~~~~~~v~giD~s~~~l~~~ 134 (282)
.+...|+|+|||.|. .++. ..+..+|+|+|.++..++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a 69 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESA 69 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHH
Confidence 356789999998653 2232 13678999999998876544
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.23 E-value=0.026 Score=41.52 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEeCC--ccc-chhhhhc-CC--CeEEEEcCCHH---HHHhCC-----CCCceEEeecccccCCC-CCCCceeEEEecch
Q 023470 102 LDLMS--SWV-SHLPQEV-SY--KRVVGHGLNAQ---ELAKNP-----RLEYFIVKDLNQDQKLE-FDHCSFDAVVCAVS 166 (282)
Q Consensus 102 LDiGc--G~~-~~~~~~~-~~--~~v~giD~s~~---~l~~~~-----~~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~ 166 (282)
||+|+ |.. ..++... +. .+++++|..+. .-+..+ ....+..++.. +.++ ++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECCC
Confidence 68996 532 2333322 22 38999999983 222222 12234444432 1121 22578999988653
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|.-+.....+..+...|+|||.+++.
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 11223455888999999999999875
No 266
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.13 E-value=1 Score=38.93 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC------CCCCceEEeecccccCCCC
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN------PRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~------~~~~~~~~~d~~~~~~l~~ 153 (282)
....+.+.+.+. +.++..|||+|+|.|....... .+.+++++|+++.+.+.- ..+..++.+|. ..+..
T Consensus 16 ~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDL 90 (262)
T ss_dssp HHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCG
T ss_pred HHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hcccc
Confidence 345555555442 2378899999999886544332 348999999999876432 22335566666 45554
Q ss_pred CC---CceeEEEecchhhccCCHHHHHHHHHHcccC
Q 023470 154 DH---CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKP 186 (282)
Q Consensus 154 ~~---~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkp 186 (282)
.+ +....|+++.-. ++ -..++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 33 345677776432 22 23466666663344
No 267
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.01 E-value=0.75 Score=39.38 Aligned_cols=101 Identities=21% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHH--HhCC--------CCC-ceEEeec--ccccCCCCCCCc-eeEE
Q 023470 98 GSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQEL--AKNP--------RLE-YFIVKDL--NQDQKLEFDHCS-FDAV 161 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l--~~~~--------~~~-~~~~~d~--~~~~~l~~~~~s-~D~v 161 (282)
..+||++|+|+|. .++......+|+-.|+..... .... ... ...+..+ ..+....+.... +|+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999998763 334444778999999886432 1111 111 2222221 111111111223 9999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++.++-+....+.++.-+...|-.+|.+++.++-+.
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999888889999999999999998777776543
No 268
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.94 E-value=0.56 Score=41.53 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred hCCCCCeEEEeCCcc-c---chhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccccc---------CCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSW-V---SHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ---------KLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~---~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~---------~l~~~~~s~D~ 160 (282)
.++.+.+||=+|+|. | ...++.++..+|+.+|+++.-++.|++..--.+....... .-.+.+..+|+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 456789999999982 2 2345556889999999999999988875411111110000 00122344888
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+.+..+ +..++.....+|+||.+++.-
T Consensus 246 ~~dCsG~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 246 TFDCSGA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEEccCc------hHHHHHHHHHhccCCEEEEec
Confidence 8877653 556788899999999977763
No 269
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.84 E-value=0.67 Score=41.53 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+||=.||| .|.. ++...+..+|+++|.+++.++.+++...-.+.+.... ..+....+.+|+|+-+-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 367889989997 3332 2333344479999999988877665432222222110 111111234888877643
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+..+.+.|++||++++.
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEE
Confidence 2 34678889999999998864
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.59 E-value=0.92 Score=43.05 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred HHHHHHhhCC--CCCeEEEeCCcccchhhhhc-----C--CCeEEEEcCCHHHHHhCCCC------C---ceEEeecccc
Q 023470 87 LTNLYRQMLR--PGSEVLDLMSSWVSHLPQEV-----S--YKRVVGHGLNAQELAKNPRL------E---YFIVKDLNQD 148 (282)
Q Consensus 87 ~~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~-----~--~~~v~giD~s~~~l~~~~~~------~---~~~~~d~~~~ 148 (282)
+.+++...+. +..+|+|-.||+|..+.... . ...++|.++++.....++-+ . ....++...
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~- 252 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS- 252 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc-
Confidence 4444444444 56689999999887654432 1 36799999998776555411 1 112222211
Q ss_pred cCC---CCCCCceeEEEec--ch-hhccC----------------------CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 149 QKL---EFDHCSFDAVVCA--VS-VQYLQ----------------------QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 149 ~~l---~~~~~s~D~v~~~--~~-l~~~~----------------------~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
... ....+.||.|+++ ++ -.|.. .....++.+...|+|||+..+.+|+.
T Consensus 253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 111 1234679999998 22 11111 11458999999999999888887765
No 271
>KOG2730 consensus Methylase [General function prediction only]
Probab=92.38 E-value=0.21 Score=41.67 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCCeEEEeCCcc-cchhhhhcCCCeEEEEcCCHHHHHhCCCCC---------ceEEeecccc-cCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSW-VSHLPQEVSYKRVVGHGLNAQELAKNPRLE---------YFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~~~~~v~giD~s~~~l~~~~~~~---------~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
....|+|.-||. |..+.....+..|+++|+++.-++.++.+. .|+++|.... ..+.+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 445689998863 445555558899999999998887776543 4556665221 2344444457777766
No 272
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.32 E-value=0.4 Score=44.42 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCeEEEeCCcccc--hhhhhc---CCCeEEEEcCCHHHHHhCC----C---CCceEEee-cccccCCCCCCC-ceeEEEe
Q 023470 98 GSEVLDLMSSWVS--HLPQEV---SYKRVVGHGLNAQELAKNP----R---LEYFIVKD-LNQDQKLEFDHC-SFDAVVC 163 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~---~~~~v~giD~s~~~l~~~~----~---~~~~~~~d-~~~~~~l~~~~~-s~D~v~~ 163 (282)
...++|+|.|.|. ..+... ....++.||.|..|+.... . .....+.. ..-..-+|.... -||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 3457889887443 222222 2457889999999885432 1 11112222 111134554444 4999999
Q ss_pred cchhhccCCHHH---HHHH-HHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEK---VFAE-VFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~---~l~~-~~r~LkpgG~li~~~~~ 196 (282)
.+.++++.+... ..++ +.+..++||.+++.-.+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999975543 3444 45567889888876443
No 273
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.07 E-value=0.62 Score=42.13 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeeccc-c---cCCCCCC-CceeEEEecch
Q 023470 97 PGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQ-D---QKLEFDH-CSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~-~---~~l~~~~-~s~D~v~~~~~ 166 (282)
++.+|+=+|||. |. .+++..+..+|+.+|.+++-++.+++.. .-.+.+... + ....... .-+|+++-+-.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445899999983 22 2344457799999999999888876632 111111110 0 0011112 25899887765
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...++..+.++++|||.+++.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEE
Confidence 245889999999999998764
No 274
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.98 E-value=0.3 Score=43.68 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred CCeEEEeCCcccchhhhh---cC-CCeEEEEcCCHHHHHh----CC----CCCceEEeecccc-cCCCCCCCceeEEEec
Q 023470 98 GSEVLDLMSSWVSHLPQE---VS-YKRVVGHGLNAQELAK----NP----RLEYFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~---~~-~~~v~giD~s~~~l~~----~~----~~~~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
..+|||+|.|-|.-+-+. .| -.+++-++.|+..-+. +. ....+...++..+ ..+|. ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhh
Confidence 356999999744322211 12 2345556666642211 11 1112333333321 23332 3457777777
Q ss_pred chhhccCC---HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQQ---PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~~---~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.-|-+... ....++.++.++.|||.++|.-++.
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 66555543 2348899999999999999875553
No 275
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.32 E-value=2.7 Score=33.62 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=70.8
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEeCCcccc-hhhh-hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC--CC
Q 023470 79 VDGGFISTLTNLYRQMLRPGSEVLDLMSSWVS-HLPQ-EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE--FD 154 (282)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~-~~~~-~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~--~~ 154 (282)
+++.....+.+.+.+......+|+-|||=+.. .+.. ..+..+++-+|++.+--....+ .|..-|.+....++ +
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~~l- 83 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPEEL- 83 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhhhc-
Confidence 55566777777777766677899999995433 2222 2367789999999875543322 46666665444444 3
Q ss_pred CCceeEEEecchhhccCCH-HHHHHHHHHcccCCcEEEEEEcC
Q 023470 155 HCSFDAVVCAVSVQYLQQP-EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++||+|++-==+ -..+. .+....+.-++|+++.+++.++.
T Consensus 84 ~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 84 KGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 5789999995111 00011 12334555556888999888653
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.60 E-value=0.84 Score=38.54 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhhC----CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeeccc
Q 023470 82 GFISTLTNLYRQML----RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQ 147 (282)
Q Consensus 82 ~~~~~~~~~~~~~~----~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~ 147 (282)
.++..+.+++.+-. .++.++||||.|--.. +.....+++.+|.|+++..++.|+. ...-+......
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 35556666665432 2567899999984322 2222357899999999877754431 11111111111
Q ss_pred c-----cCCCCCCCceeEEEecchhh
Q 023470 148 D-----QKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 148 ~-----~~l~~~~~s~D~v~~~~~l~ 168 (282)
+ ..+--.++.||+++|+=-+|
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred CccccccccccccceeeeEecCCCcc
Confidence 1 12222367899999996554
No 277
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=0.33 Score=45.44 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHHHHHhh--CCCCCeEEEeCCcccch-hhhhcCCCeEEEEcCCHHHHHhCCC
Q 023470 86 TLTNLYRQM--LRPGSEVLDLMSSWVSH-LPQEVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 86 ~~~~~~~~~--~~~~~~vLDiGcG~~~~-~~~~~~~~~v~giD~s~~~l~~~~~ 136 (282)
.+-..+.+. ++.+..+||+.||+|.. ++...+..+|+|+++++++++-|+.
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK 423 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhh
Confidence 344444443 45677899999998754 3333478899999999999876553
No 278
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.27 E-value=1.3 Score=39.08 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--cCC-CCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--QKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--~~l-~~~~~s~D~v~~~~~l 167 (282)
+.++.+||..|||. |...... ..+.+|++++.+++..+..+... .......... ..+ ....+.+|+|+.+..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 55678888889863 3332221 24678999999998776543322 1111111000 000 123456999886532
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....++++.+.|+++|.++..
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEE
Confidence 145788999999999998864
No 279
>PHA01634 hypothetical protein
Probab=90.21 E-value=0.69 Score=35.30 Aligned_cols=68 Identities=13% Similarity=-0.097 Sum_probs=42.1
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc-cCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
.+.+|+|||.+.|. ......+...|+++++++......+.+. .+.+.|-... .+++-.-+.||+.++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEEE
Confidence 67889999996553 3333447789999999998776554432 2344443221 3444344567776653
No 280
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.77 E-value=1.5 Score=32.72 Aligned_cols=86 Identities=14% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
..++|.++|-|.-...+... .+..++++|+.+. .++.-.++.+.|+.+ .++.+- ...|+|.|.- -+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~~g~~~v~DDitn-P~~~iY-~~A~lIYSiR------ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAPEGLRFVVDDITN-PNISIY-EGADLIYSIR------PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCcccceEEEccCCC-ccHHHh-hCccceeecC------CCH
Confidence 34589999999543333222 6699999999998 445555678888854 344432 2357777643 233
Q ss_pred HHHHHHHHcccC-CcEEEEE
Q 023470 175 KVFAEVFRVLKP-GGVFIVS 193 (282)
Q Consensus 175 ~~l~~~~r~Lkp-gG~li~~ 193 (282)
++...+.++-+. |..+++.
T Consensus 82 El~~~ildva~aVga~l~I~ 101 (129)
T COG1255 82 ELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHHHHHHHhhCCCEEEE
Confidence 444444444332 4445555
No 281
>PRK13699 putative methylase; Provisional
Probab=89.47 E-value=0.38 Score=40.79 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.3
Q ss_pred CCCCCceeEEEec--chh--hcc-----------CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 152 EFDHCSFDAVVCA--VSV--QYL-----------QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 152 ~~~~~s~D~v~~~--~~l--~~~-----------~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++++|+|+|+.. +.+ ..- .-....+.+++|+|||||.+++-.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3567778887777 221 100 012468999999999999987643
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=89.36 E-value=0.36 Score=42.35 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCceeEEEec--chh--h------------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCA--VSV--Q------------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l--~------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++++||+|++. +.+ . +..-....+.++.|+|||||.+++...
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 456788888885 321 0 111125689999999999999998644
No 283
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.79 E-value=3.5 Score=36.72 Aligned_cols=89 Identities=16% Similarity=0.024 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.++++.+||=.|+|. |....+ ...+.+|++++.+++-++.+++..--.+.+. .+. ..+.+|+++-...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP---- 232 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC----
Confidence 456788999999963 322211 1245689999999887766665432222222 111 1234787654332
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+....++|++||++++.
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEE
Confidence 1 24788899999999998764
No 284
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.71 E-value=3.1 Score=37.23 Aligned_cols=90 Identities=9% Similarity=0.075 Sum_probs=54.9
Q ss_pred CCCCCeEEEeCCc-ccch---hhhh-cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSS-WVSH---LPQE-VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~~---~~~~-~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
..++.+||=+||| .|.. +++. .+..+|+++|.+++-++.++...... .. ..+. .+..+|+|+-.-.-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~---~~~~-~~~g~d~viD~~G~-- 232 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LI---DDIP-EDLAVDHAFECVGG-- 232 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--eh---hhhh-hccCCcEEEECCCC--
Confidence 4568899999997 3432 2332 34678999999987776655422111 11 1111 11237888764430
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
......+.+..++|++||++++.
T Consensus 233 -~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 233 -RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -CccHHHHHHHHHhCcCCcEEEEE
Confidence 01245788999999999998753
No 285
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.51 E-value=2.5 Score=35.47 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=53.7
Q ss_pred hhCCCCCeEEEeCCc--c-cchhhhhcCCCeEEEEcCCHHHHHhCC------CCCceEEeecccc-cCCCCCCCceeEEE
Q 023470 93 QMLRPGSEVLDLMSS--W-VSHLPQEVSYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG--~-~~~~~~~~~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
..++.+.++.||||- . ..++....+...+++.|+++.-++.+. .....+..+..+. ..+. .+..+|+|+
T Consensus 12 ~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~iv 90 (226)
T COG2384 12 NLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIV 90 (226)
T ss_pred HHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEE
Confidence 344466679999994 2 334555557789999999987654432 2233444444321 1222 233588887
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+ --.-....+++-...|+.=-++++.
T Consensus 91 IAGM--GG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAGM--GGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EeCC--cHHHHHHHHHHhhhhhcCcceEEEC
Confidence 7643 1112234555555555533345544
No 286
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.70 E-value=1 Score=37.35 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~ 134 (282)
+.+..++...-.++..|||.=||.|..+.. ..-+.+.+|+|++++..+.+
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 334445555667899999999988765433 34678999999999877654
No 287
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.65 E-value=1.7 Score=40.28 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 96 RPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
.++.+|+=+|||. |...+.. ..+.+|+.+|.++.-++.+..... ...+.. +.+ ...|+|+..-. .
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~--e~v----~~aDVVI~atG-----~ 267 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTME--EAV----KEGDIFVTTTG-----N 267 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHH--HHH----cCCCEEEECCC-----C
Confidence 4688999999984 4333222 245689999999876655554331 222221 111 24699987532 3
Q ss_pred HHHHHHH-HHHcccCCcEEEEE
Q 023470 173 PEKVFAE-VFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~~~~l~~-~~r~LkpgG~li~~ 193 (282)
..++.. ..+.+|+||+++..
T Consensus 268 -~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 268 -KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -HHHHHHHHHhcCCCCcEEEEe
Confidence 334554 58999999998754
No 288
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.26 E-value=4.3 Score=35.76 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+||=+||| .|.. +++..+...|+++|.+++.++.+.... +.+.. .. ....+|+|+-+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~~~--~~---~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLDPE--KD---PRRDYRAIYDASG----- 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccChh--hc---cCCCCCEEEECCC-----
Confidence 356678888997 3332 333334455778899988776655421 11211 11 1245888887644
Q ss_pred CHHHHHHHHHHcccCCcEEEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...++.+.+.|++||++++.
T Consensus 210 ~-~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D-PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C-HHHHHHHHHhhhcCcEEEEE
Confidence 2 34678889999999998854
No 289
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.63 E-value=4.5 Score=36.43 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CC-CCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EF-DHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~-~~~s~D~v~~~ 164 (282)
.+.++.+||=.|||. |.. +++..+..+|+++|.+++.++.++....-.+.+.... ..+ .. ....+|+|+-+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 356788999899963 332 2333333469999999877665543321112222110 000 01 12358888765
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. . ...+....+.|++||++++.
T Consensus 253 ~g-----~-~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VG-----R-PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 43 2 34677888999999998864
No 290
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.92 E-value=1.6 Score=41.51 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=59.3
Q ss_pred CCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--------cC------------CC
Q 023470 97 PGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--------QK------------LE 152 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--------~~------------l~ 152 (282)
++.+||=+|||. |..... ..-+..|+++|.+++.++.++... .+...+...+ .. ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 457899999984 222221 124578999999998776665432 2222221100 00 11
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
-.-..+|+|+.+-.+..-+.|.-+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 112459999888766555566568899999999999876
No 291
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.84 E-value=11 Score=32.49 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=59.5
Q ss_pred CeEEEeCCcccchhhhhc--CCCeEEEEcCCHH------HHHhC----CCCCceEEeecccc--cCC---CCCCCceeEE
Q 023470 99 SEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQ------ELAKN----PRLEYFIVKDLNQD--QKL---EFDHCSFDAV 161 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~------~l~~~----~~~~~~~~~d~~~~--~~l---~~~~~s~D~v 161 (282)
..|+.+|||.-....+.. .+..++-+|.-.- .+... .....++..|+..+ ..+ .+..+.--++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 469999999643322221 2466777776642 22221 12234555555411 111 2323344577
Q ss_pred EecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++-.++.+++. ...+|+.+.+...||+.+++...++
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 77888889963 4458999998888999999987654
No 292
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.78 E-value=3.7 Score=34.61 Aligned_cols=91 Identities=26% Similarity=0.280 Sum_probs=54.2
Q ss_pred CCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~~l 167 (282)
.++.+||-.|+|. |..+... ..+.+|++++.+++..+..+....-.+.+... ... ....+.+|+++.+..-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCCC
Confidence 5788999999974 3332221 24589999999987655443221111111110 000 1123569999875431
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+..+.+.|+++|.++..
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEE
Confidence 14677888999999998864
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=84.26 E-value=2.2 Score=37.35 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhh-hhcCCCeEEEEcCCHHHHHhCCC
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLP-QEVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~-~~~~~~~v~giD~s~~~l~~~~~ 136 (282)
.+..++...-.++..|||--||.|..+. +..-+.+.+|+|++++..+.+..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence 3444455555689999999998876543 34467899999999987765543
No 294
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.72 E-value=4.7 Score=36.49 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=54.3
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|+|. |.. +++..+..+|+++|.+++.++.++...--.+.+.... +.+ ....+.+|+|+-+-
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 355778888899973 332 2332333379999999887766544321112221110 000 01122588888653
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+..+.+.|++||++++.
T Consensus 268 G-----~-~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 268 G-----S-VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C-----C-hHHHHHHHHHHhcCCEEEEE
Confidence 2 1 35678888999999998754
No 295
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.65 E-value=1.6 Score=40.04 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=35.6
Q ss_pred CCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+++++|.++.+..+.++++ ..+.++++.+.++|||++++=
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45799999999999999964 445899999999999999874
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.29 E-value=1.6 Score=32.27 Aligned_cols=31 Identities=10% Similarity=-0.203 Sum_probs=20.9
Q ss_pred CCCeEEEeCCcccch--hhhhcCCCeEEEEcCCH
Q 023470 97 PGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNA 128 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~ 128 (282)
+....+|||||.|.. +.. ..+..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHH-hCCCCcccccccc
Confidence 355699999997753 332 2566778888654
No 297
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.23 E-value=9.1 Score=33.68 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=54.1
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.+.++.+||-.||| .|..+... ..+.+|++++.+++..+..+... ...+..... ....-..+.+|+++.+..
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAE-LDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCc-chHHhccCCCCEEEECCC---
Confidence 35577889989996 44333222 24678999999988765543221 111111100 000001245898887532
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 235 --~-~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 --S-GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --c-HHHHHHHHHhcccCCEEEEE
Confidence 1 34678889999999998764
No 298
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=83.04 E-value=2.4 Score=32.33 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
+..+|+|+|-|.-...+... .+..|+++|+.+. .++....+...|+.. .++.+- ...|+|.|.-- -++..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~~g~~~v~DDif~-P~l~iY-~~a~lIYSiRP---P~El~ 84 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAPEGVNFVVDDIFN-PNLEIY-EGADLIYSIRP---PPELQ 84 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---SSS---HHHH-TTEEEEEEES-----TTSH
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccccCcceeeecccC-CCHHHh-cCCcEEEEeCC---ChHHh
Confidence 44599999999533333222 4589999999997 333445677888743 233322 35788888653 22334
Q ss_pred HHHHHHHHcccCCcEEEEEEc
Q 023470 175 KVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+-++.+.+ |.-+++...
T Consensus 85 ~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 85 PPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp HHHHHHHHHH--T-EEEEE-B
T ss_pred HHHHHHHHHh--CCCEEEECC
Confidence 4444444432 566777643
No 299
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.32 E-value=2.9 Score=31.36 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=47.2
Q ss_pred CCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 118 YKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 118 ~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+.+|+++|.+++-++.+++...-.+.+.... +.+ . .+...+|+|+-+-. -...++....+|+|||.+++
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------cHHHHHHHHHHhccCCEEEE
Confidence 4899999999987776665542233333211 011 1 22357999987754 25688999999999999987
Q ss_pred E
Q 023470 193 S 193 (282)
Q Consensus 193 ~ 193 (282)
.
T Consensus 88 v 88 (130)
T PF00107_consen 88 V 88 (130)
T ss_dssp E
T ss_pred E
Confidence 6
No 300
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.21 E-value=7.1 Score=35.33 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=55.0
Q ss_pred HhhCCCCCeEEEeCC--c--ccchhhhhc-C--CCeEEEEcCCHH---HHHh-CCCC--CceEEeeccc--ccCC-----
Q 023470 92 RQMLRPGSEVLDLMS--S--WVSHLPQEV-S--YKRVVGHGLNAQ---ELAK-NPRL--EYFIVKDLNQ--DQKL----- 151 (282)
Q Consensus 92 ~~~~~~~~~vLDiGc--G--~~~~~~~~~-~--~~~v~giD~s~~---~l~~-~~~~--~~~~~~d~~~--~~~l----- 151 (282)
.-.+.|+.+|||+++ | +...+.... . ...|++=|.+.. ||.. .+.. ....+..... -...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 334568999999987 4 112222221 1 347999999875 3321 1111 1111111100 0111
Q ss_pred -CCCCCceeEEEec------chhhccCCH-----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 152 -EFDHCSFDAVVCA------VSVQYLQQP-----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 -~~~~~s~D~v~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.....||-|+|- .++.+.++. -.++.+..+.||+||.++-++-
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 1223457877764 233333221 1278899999999999998854
No 301
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.61 E-value=8.8 Score=33.85 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~ 164 (282)
.+.++.+||=.|. | .|....+. ..+.+|++++.+++..+.++...--.+.+......+ ....+.+|+|+-+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 3567889988885 4 44333222 246689999999876665543321111111100000 1112458998865
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ...+..+.++|++||+++..
T Consensus 215 ~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 215 VG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CC-------HHHHHHHHHHhCcCcEEEEe
Confidence 43 23468889999999999853
No 302
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.33 E-value=13 Score=32.95 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-CC-CCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-EF-DHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~~-~~~s~D~v~~~~~ 166 (282)
+.++.+||=+|+|. |.. +++..+..+|+++|.+++.++.+++..--.+.+.... ..+ .. ....+|+|+-+..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 45688888889973 322 2333333349999999877665543321112221110 011 11 2236899886532
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...+....+.|+++|++++.
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEE
Confidence 134567788999999998753
No 303
>PRK13699 putative methylase; Provisional
Probab=80.84 E-value=3.8 Score=34.64 Aligned_cols=49 Identities=24% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~ 135 (282)
+..++.....++..|||-=||.|..+.. ..-+.+++|+|++++..+.+.
T Consensus 153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 3444445556889999999998865443 346789999999998765543
No 304
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.82 E-value=6.2 Score=34.15 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc----cCCCCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD----QKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~----~~l~~~~~s~D~v~~~~~l 167 (282)
.++.+||=+|+|. |.. +++..+..+|+++|.+++-++.+++...-.+.+.... ..+. ....+|+|+-.-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC-
Confidence 3677899899973 322 2333344459999999876665544321111111100 0111 1235888876542
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...++.+.+.|+|+|++++.
T Consensus 197 -----~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 197 -----ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -----ChHHHHHHHHHhcCCCEEEEe
Confidence 145678889999999998754
No 305
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=79.93 E-value=39 Score=29.18 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCCeEEEeCCcccch---hhhhc----CCCeEEEEcCCHHHHHh-----CCCCCceEEeecccc-----cCCCCCCCcee
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV----SYKRVVGHGLNAQELAK-----NPRLEYFIVKDLNQD-----QKLEFDHCSFD 159 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~----~~~~v~giD~s~~~l~~-----~~~~~~~~~~d~~~~-----~~l~~~~~s~D 159 (282)
.....+|+|+|.... +.... .-.+++.+|+|...+.. .+......+..+..+ ..+| ..++==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 366799999996432 22221 34689999999987642 222222222222222 1233 222222
Q ss_pred EEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 160 AVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 160 ~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++...+|-.+. +-..++..+...|+||-++++-+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 333335565663 233489999999999999988653
No 306
>PLN02740 Alcohol dehydrogenase-like
Probab=79.84 E-value=9.9 Score=34.58 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc---c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ---D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~---~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=+|||. |.. +++..+..+|+++|.+++.++.++....-.+.+... + +.+ .+..+.+|+|+-
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 456788999999973 332 233333347999999988776665443111112110 0 000 111225888887
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
.-. . ...+....+.+++| |++++.
T Consensus 275 ~~G-----~-~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 275 CAG-----N-VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCC-----C-hHHHHHHHHhhhcCCCEEEEE
Confidence 543 2 35678888899997 887653
No 307
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=79.78 E-value=8.4 Score=34.08 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCCCCCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
++.+||-.|||. |..+ ++..+...+++++.+++..+.++....-.+.+.... ..+....+.+|+++.+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 678888899963 3332 222233379999998876654333221112222110 1121112348999876431
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...++.+.+.|+++|+++..
T Consensus 242 ---~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 242 ---PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ---HHHHHHHHHHHhcCCEEEEE
Confidence 34678899999999998853
No 308
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=79.34 E-value=3.8 Score=36.74 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=53.4
Q ss_pred hhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC-----------------ceEEeecccccCCCC-
Q 023470 93 QMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE-----------------YFIVKDLNQDQKLEF- 153 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~-----------------~~~~~d~~~~~~l~~- 153 (282)
..+.+|..|+|-=.|+|..+.... =++-|+|.||+-.|+...++.. ...++|. ..-++
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~---sn~~~r 280 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADF---SNPPLR 280 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecc---cCcchh
Confidence 346688999998888887665433 4679999999998886443221 2345554 22332
Q ss_pred CCCceeEEEecchhhccCCHHHHHHHHHHcc
Q 023470 154 DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVL 184 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~L 184 (282)
....||+|+| ||+-.+++-.|.+
T Consensus 281 sn~~fDaIvc--------DPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 281 SNLKFDAIVC--------DPPYGVREGARKT 303 (421)
T ss_pred hcceeeEEEe--------CCCcchhhhhhhh
Confidence 2467999999 6666666666654
No 309
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.31 E-value=8.2 Score=34.01 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=54.1
Q ss_pred hCCCCCeEEEeCCcc-cchhhhh--cCCCe-EEEEcCCHHHHHhCCCCCceEEeecccccCC----CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQE--VSYKR-VVGHGLNAQELAKNPRLEYFIVKDLNQDQKL----EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~~--~~~~~-v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l----~~~~~s~D~v~~~~ 165 (282)
.+.++.+||-+|+|. |..+... ..+.+ +++++.+++..+..+....-.+.+... ... ....+.+|+++.+.
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR-EDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-CCHHHHHHhcCCCCcEEEECC
Confidence 345778899999863 3332221 13445 899999987765443222111222211 110 11235689998753
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ....+.++.+.|+++|+++..
T Consensus 235 ~------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 235 G------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred C------ChHHHHHHHHHHhcCCEEEEE
Confidence 2 135778889999999998753
No 310
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=79.01 E-value=13 Score=31.70 Aligned_cols=90 Identities=19% Similarity=0.110 Sum_probs=52.5
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCe-EEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchh
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKR-VVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~-v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.+.++.+||=.|||. |.. ++.. .+.+ |++++.+++..+.+++.. ...+.... ... .....+|+|+.+..
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~-~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~d~vl~~~~- 168 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKA-AGAREVVGVDPDAARRELAEALGPADPVAADT--ADE-IGGRGADVVIEASG- 168 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCCcEEEECCCHHHHHHHHHcCCCccccccc--hhh-hcCCCCCEEEEccC-
Confidence 455778888889973 322 2222 3455 999999987766544332 00011110 111 12345898886422
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....+.+..+.|+++|.++..
T Consensus 169 -----~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 -----SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred -----ChHHHHHHHHHhcCCcEEEEE
Confidence 134678889999999998753
No 311
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.22 E-value=9.8 Score=34.12 Aligned_cols=89 Identities=17% Similarity=0.011 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcC---CHHHHHhCCCCCceEEeecccccCC--CCCCCceeEEEecch
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGL---NAQELAKNPRLEYFIVKDLNQDQKL--EFDHCSFDAVVCAVS 166 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~---s~~~l~~~~~~~~~~~~d~~~~~~l--~~~~~s~D~v~~~~~ 166 (282)
.++.+||=+|||. |.. +++. .+.+|++++. +++-++.+++...-.+ +... +++ ....+.+|+|+-+-.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~-~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v-~~~~-~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRL-RGFEVYVLNRRDPPDPKADIVEELGATYV-NSSK-TPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEe-cCCc-cchhhhhhcCCCCEEEECcC
Confidence 4678899999973 332 2222 4558999986 5655554443321111 2211 110 001245888887653
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.++|++||.+++.
T Consensus 248 -----~-~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 248 -----V-PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred -----C-HHHHHHHHHHccCCcEEEEE
Confidence 1 34678899999999998753
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.14 E-value=11 Score=33.90 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=54.4
Q ss_pred hCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCC-CCCceEEeeccc--c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQ--D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~--~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+ | .|....+ ...+.+|++++.+++..+.++ ...--.+.+... + +.+ ....+.+|+|+-
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 3567889999998 5 3433322 124678999999987665433 221111122110 0 001 111235898886
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. ...+..+.+.|++||++++.
T Consensus 235 ~vG-------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 235 NVG-------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEE
Confidence 543 24678899999999998754
No 313
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.12 E-value=14 Score=32.96 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.++++.+||=.|+|. |.. +++..+...++++|.+++..+.++....-.+.+.... ..+ . .....+|+|+.+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence 456778888889973 322 2333344479999999876655444321112221110 000 1 123458998864
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
.. . ...+.++.+.|+++|+++.
T Consensus 243 ~g-----~-~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 243 GG-----G-QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEE
Confidence 33 1 3567899999999999874
No 314
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.24 E-value=10 Score=33.30 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=54.0
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c--cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D--QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~--~~l-~~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|. | .|..+.+. ..+.+|++++.+++..+..++..--.+.+... + ..+ ....+.+|+|+-..
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence 3567888988885 4 34333221 25678999998887665544332111222211 0 000 11124589988654
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.+..+.|+++|+++..
T Consensus 220 g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 220 G-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred C-------HHHHHHHHHhhccCCEEEEE
Confidence 3 24678899999999998753
No 315
>PLN02827 Alcohol dehydrogenase-like
Probab=76.13 E-value=10 Score=34.50 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=53.7
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc---c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ---D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~---~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |.. +++..+...|+++|.+++..+.++...--.+.+... + ..+ .+..+.+|+|+-
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 356788999999973 332 233334446999999987766554433111112110 0 000 011125888876
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIV 192 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~ 192 (282)
.-. . ...+....+.|++| |++++
T Consensus 270 ~~G-----~-~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 270 CVG-----D-TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCC-----C-hHHHHHHHHhhccCCCEEEE
Confidence 543 1 34577888899998 99875
No 316
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.12 E-value=10 Score=34.13 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc--c--cC-CCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--D--QK-LEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~--~~-l~~~~~s~D~v~~~~ 165 (282)
.+++.+|.=+||| .|. .-+......+|+++|++++-++.+++..--...+-.+ + +. ..+.++-.|.++-
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e-- 260 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE-- 260 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE--
Confidence 4567788888885 222 1233347789999999999888877654211111100 0 00 1122333454432
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+.+. ..++.....+.++|..++.
T Consensus 261 ---~~G~~-~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 261 ---CVGNV-EVMRQALEATHRGGTSVII 284 (366)
T ss_pred ---ccCCH-HHHHHHHHHHhcCCeEEEE
Confidence 23233 3778888888889998764
No 317
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=75.81 E-value=8.9 Score=33.97 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred hCCCCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC--CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL--EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l--~~~~~s~D~v~~~ 164 (282)
.++++.+||-.|+|. |..+ +...+...+++++.+++..+.++....-.+.+.... ..+ -.+.+.+|+++.+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 355678888888863 3332 222232478899888766554333221111111100 000 0123568998865
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..- ...+.++.+.|+++|+++..
T Consensus 244 ~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 VGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cCC------HHHHHHHHHHhhcCCEEEEE
Confidence 321 24788899999999998743
No 318
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=75.30 E-value=2.2 Score=38.99 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCeEEEeCCcccc---hhhhh-cCCCeEEEEcCCHHHHHhCCCC------Cc----eEEeecccccCCCCCCCceeEE
Q 023470 96 RPGSEVLDLMSSWVS---HLPQE-VSYKRVVGHGLNAQELAKNPRL------EY----FIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~-~~~~~v~giD~s~~~l~~~~~~------~~----~~~~d~~~~~~l~~~~~s~D~v 161 (282)
..+.+|||.=+|+|. +.+.+ ....+|+.-|+|+++++..+.+ .. ....|.+ .-+......||+|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn--~ll~~~~~~fD~I 125 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDAN--VLLYSRQERFDVI 125 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HH--HHHCHSTT-EEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHH--HHhhhccccCCEE
Confidence 345789999776653 34444 3557999999999877543221 11 2222332 1222246779988
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
=.- -...+..++..+.+.+|.||.|+++..+
T Consensus 126 DlD----PfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 126 DLD----PFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EE------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EeC----CCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 543 1126677999999999999999998543
No 319
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=74.68 E-value=8 Score=36.02 Aligned_cols=84 Identities=17% Similarity=0.079 Sum_probs=50.6
Q ss_pred CCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|+=+|+|. |...+... -+.+|+.+|+++.....+.... +.+.++ .+. + ...|+|+..-. .
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-~~v~~l---~ea-l--~~aDVVI~aTG-----~- 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-FRVMTM---EEA-A--ELGDIFVTATG-----N- 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-CEecCH---HHH-H--hCCCEEEECCC-----C-
Confidence 678999999984 43333222 4669999999886443322211 222222 111 1 25799987532 2
Q ss_pred HHHHH-HHHHcccCCcEEEEE
Q 023470 174 EKVFA-EVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l~-~~~r~LkpgG~li~~ 193 (282)
..++. +....+|+|++++..
T Consensus 278 ~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEc
Confidence 33554 788999999988764
No 320
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=74.59 E-value=8.9 Score=35.47 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=50.5
Q ss_pred CCCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 96 RPGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+.+|+=+|||. |...+... -+.+|+++|.++.....+.... +.+.+.. +.+ ...|+|++.-. .
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-~~v~~le--eal----~~aDVVItaTG-----~ 260 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-FRVMTME--EAA----KIGDIFITATG-----N 260 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-CEeCCHH--HHH----hcCCEEEECCC-----C
Confidence 4688999999984 44333322 4679999988875433222221 2222221 111 24688877432 2
Q ss_pred HHHHHH-HHHHcccCCcEEEEE
Q 023470 173 PEKVFA-EVFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~~~~l~-~~~r~LkpgG~li~~ 193 (282)
..++. +....+|+|++++..
T Consensus 261 -~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 261 -KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred -HHHHHHHHHhcCCCCcEEEEE
Confidence 44454 588899999988765
No 321
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.40 E-value=55 Score=28.01 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHh----CCC---CCceEEeecccccCCCC-CCCceeEEEec--
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAK----NPR---LEYFIVKDLNQDQKLEF-DHCSFDAVVCA-- 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~----~~~---~~~~~~~d~~~~~~l~~-~~~s~D~v~~~-- 164 (282)
.+.+||=+|=+-.. .++......+|+.+|+++..++. +++ .......|+- ..+|- -.++||++++-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR--~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR--DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT--S---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc--ccCCHHHhcCCCEEEeCCC
Confidence 57889999975222 22222356799999999998743 221 1234455543 23331 13789999995
Q ss_pred chhhccCCHHHHHHHHHHcccCCc-EEEEEEcCch
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGG-VFIVSFSNRM 198 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG-~li~~~~~~~ 198 (282)
++++-+ .-++......||..| ..++.+.+..
T Consensus 122 yT~~G~---~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 122 YTPEGL---KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp SSHHHH---HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred CCHHHH---HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 333222 457888888998766 6677776654
No 322
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.11 E-value=8.5 Score=33.69 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=50.2
Q ss_pred CeEEEeCCc-ccchhhhhc----CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSS-WVSHLPQEV----SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~----~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+|+=+|.| .|..++... ....|+|.|.+...++.+........ ... ..........|+|+.+-=+..+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~-~~~~~~~~~aD~VivavPi~~~--- 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE--LTV-AGLAEAAAEADLVIVAVPIEAT--- 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc--ccc-chhhhhcccCCEEEEeccHHHH---
Confidence 467778887 344443322 34568999999988877764431111 100 0111223457888886433333
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
..+++++...||+|..+.
T Consensus 78 ~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 78 EEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHhcccCCCCCEEE
Confidence 667888888888876554
No 323
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.95 E-value=20 Score=31.91 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=51.5
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-C-CCCCcee-EEEecc
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-E-FDHCSFD-AVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~-~~~~s~D-~v~~~~ 165 (282)
+.++.+||=.|||. |.. +++..+...|+++|.+++.++.++....-.+.+.... ..+ . .....+| +|+-+-
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 45678888889973 322 2333343358999999877665543321111111100 000 0 1123466 555432
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+.+..+.|++||.+++.
T Consensus 238 G-----~-~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 238 G-----V-PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred C-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 2 1 45778899999999998764
No 324
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.90 E-value=29 Score=31.00 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=51.2
Q ss_pred hCCCCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-----CC-CCCcee--
Q 023470 94 MLRPGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-----EF-DHCSFD-- 159 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-----~~-~~~s~D-- 159 (282)
.+.++.+||=.|||. |... +.. .+.+|+++|.+++.++.++....-.+.+.... .++ .+ ....+|
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~-~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKA-MGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 456788999999973 3322 222 35589999999887766544321111111100 000 00 112243
Q ss_pred --EEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 160 --AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 --~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|+-+ ... ...++.+.++|++||++++.
T Consensus 242 ~d~v~d~-----~g~-~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 242 GWKIFEC-----SGS-KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred cCEEEEC-----CCC-hHHHHHHHHHHhcCCeEEEE
Confidence 44422 212 34677788899999998764
No 325
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=72.83 E-value=5 Score=34.97 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=39.0
Q ss_pred eEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCC--CCceeEEEecc
Q 023470 100 EVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFD--HCSFDAVVCAV 165 (282)
Q Consensus 100 ~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~--~~s~D~v~~~~ 165 (282)
+|+|+-||.|.. -....+...+.++|+++.+++..+.+. .....|+ .++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di---~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDI---TKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCcc---ccCchhhcCCCCCEEEeCC
Confidence 689999986643 223335566788999998876433321 2345555 333211 25699999884
No 326
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=72.79 E-value=6.6 Score=34.88 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=52.6
Q ss_pred CCCeEEEeCCc-ccchhhhh---cCCCeEEEEcCCHHHH-HhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSS-WVSHLPQE---VSYKRVVGHGLNAQEL-AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~---~~~~~v~giD~s~~~l-~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
++.+|+=+||| .|...... .+..+|+.+|.+++.. +.+..... ...+. .++.-.-..+|+|++.-.-.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~---~~~~~~l~~aDvVi~at~~~~~- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPL---DELLELLNEADVVISATGAPHY- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeH---HHHHHHHhcCCEEEECCCCCch-
Confidence 57889999998 34333222 2457899999997543 33332221 12222 1111001347999998654333
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
...+..+....+.+|.+++.+..|.-..
T Consensus 252 --~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 252 --AKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred --HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 3344444443334678888876553333
No 327
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=71.97 E-value=7.2 Score=36.56 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=62.1
Q ss_pred eEEEeCCc-ccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-----c-------cCCCCCCCceeEEEec--
Q 023470 100 EVLDLMSS-WVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-----D-------QKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-----~-------~~l~~~~~s~D~v~~~-- 164 (282)
.|+.+|.| .+.++...++...++++.+.+.|++.++....+...+-+. . ..-.-.+..||++..-
T Consensus 300 lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvd 379 (482)
T KOG2352|consen 300 LVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVD 379 (482)
T ss_pred EEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECC
Confidence 35555554 3345555558899999999999998887554333222100 0 0111145678888754
Q ss_pred --chhhccCCH------HHHHHHHHHcccCCcEEEEEE--cCchhHHHHH
Q 023470 165 --VSVQYLQQP------EKVFAEVFRVLKPGGVFIVSF--SNRMFYEKAI 204 (282)
Q Consensus 165 --~~l~~~~~~------~~~l~~~~r~LkpgG~li~~~--~~~~~~~~~~ 204 (282)
. .|-+.-+ +.++..+..+|.|-|.+++.. .+..+.....
T Consensus 380 s~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~ 428 (482)
T KOG2352|consen 380 SKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVL 428 (482)
T ss_pred CCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHH
Confidence 2 2222211 348899999999999999864 3444444433
No 328
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.88 E-value=14 Score=35.17 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=55.9
Q ss_pred eEEEeCCcccchhh------h-hcCCCeEEEEcCCHHHHHhC--------CCCCceEEeecccccCCCCCCCceeEEEec
Q 023470 100 EVLDLMSSWVSHLP------Q-EVSYKRVVGHGLNAQELAKN--------PRLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 100 ~vLDiGcG~~~~~~------~-~~~~~~v~giD~s~~~l~~~--------~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.|+=+|.|-|-... . ..+..++++++=++.++..- .+....+..|+ ..+.-+....|+++|-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM---R~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM---RKWNAPREQADIIVSE 446 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc---cccCCchhhccchHHH
Confidence 46778887443211 1 11567899999998765321 12335566676 6676445778999885
Q ss_pred chhhccC--CHHHHHHHHHHcccCCcEEE
Q 023470 165 VSVQYLQ--QPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 165 ~~l~~~~--~~~~~l~~~~r~LkpgG~li 191 (282)
..=..-. =-.+.|..+-+.|||+|+.|
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 3111111 12569999999999998875
No 329
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.65 E-value=5.5 Score=31.35 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|+|+|-|+...+.. .-..-+|+++++-.++.++ +...|...|+ -..++ +.|..|+.+.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl---wK~dl--~dy~~vviFg 146 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL---WKVDL--RDYRNVVIFG 146 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh---hhccc--cccceEEEee
Confidence 55789999999887544333 3357799999997765433 2234444454 33333 3355555555
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEE-EEcCch
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIV-SFSNRM 198 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~-~~~~~~ 198 (282)
+-.-++|.+. ++..-|..+..++- -+|-+.
T Consensus 147 aes~m~dLe~---KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 147 AESVMPDLED---KLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hHHHHhhhHH---HHHhhCcCCCeEEEEecCCCc
Confidence 4444444444 33334445555553 345443
No 330
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=71.56 E-value=20 Score=31.38 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=55.0
Q ss_pred hCCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+.++.+||=.|+|. |..+.+. ..+.++++++.+++..+.+++...-.+.+. ... ...+.+|+++.+..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~g---- 223 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEATG---- 223 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECCC----
Confidence 345678888889873 3332221 246679999999887765544321112222 111 23356899987632
Q ss_pred CCHHHHHHHHHHcccCCcEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~ 192 (282)
-...+..+.+.|+++|.++.
T Consensus 224 --~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 224 --SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --ChHHHHHHHHHhhcCCEEEE
Confidence 14467888899999999986
No 331
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=70.77 E-value=10 Score=33.34 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
++...+||=||-|-|..+.... ...++.-+|+....++..+. ......+|... .--..+.++||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~-fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL-FLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH-HHHHhccCCce
Confidence 3456789999998665544433 34567777877765543321 11333443311 00123468899
Q ss_pred EEEecchhhccC----CHHHHHHHHHHcccCCcEEEEE
Q 023470 160 AVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|+.-..=--.+ =....+..+.+.||+||+++..
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 998753211111 0133788899999999999876
No 332
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.36 E-value=7.9 Score=35.08 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=56.8
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCc--------eEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEY--------FIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~--------~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
..+|||.=||+|. +++.+.+..+|+.-|+|+++++..+.+.. .+..|.+ .-+.-....||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN--~lm~~~~~~fd~IDiD-- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN--ALLHELHRAFDVIDID-- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHH--HHHHhcCCCccEEecC--
Confidence 6789999888764 34444455699999999998865443321 1112221 1111112456655321
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
=...|..++..+.+.+|.||.+.++-
T Consensus 129 --PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 --PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred --CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 11256779999999999999999874
No 333
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=70.25 E-value=11 Score=29.93 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcc-cchhhhhc---CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCce
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSW-VSHLPQEV---SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~-~~~~~~~~---~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
....+.+.+.+....+.+|.=.|+|. |..+.... ...-...+|.++.-.-+--.....-+..- +.+ .+...
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p---~~l--~~~~p 127 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSP---EEL--KERKP 127 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEG---GG----SS--
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCH---HHH--hhCCC
Confidence 33445555544444678899999973 33333322 12234567877643211111112223332 233 23456
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|+. ...++. +++++.+...++.||.+++-+|
T Consensus 128 d~viv-law~y~---~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 128 DYVIV-LAWNYK---DEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp SEEEE-S-GGGH---HHHHHHTHHHHHTT-EEEE-SS
T ss_pred CEEEE-cChhhH---HHHHHHHHHHHhcCCEEEEeCC
Confidence 77655 334444 6778888888899999998654
No 334
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.12 E-value=2.1 Score=35.51 Aligned_cols=26 Identities=38% Similarity=0.682 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.....+.+++|+|||||.+++.+...
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecch
Confidence 34678999999999999999886654
No 335
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=70.01 E-value=22 Score=31.46 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=53.6
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCC-CCceEEeeccc--c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQ--D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~--~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+ | .|..+.+. ..+.+|++++.+++..+.++. ..--.+.+... + +.+ ....+.+|+|+-
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4567889998887 4 34333222 256689999988876654433 22111111100 0 000 111246898887
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
... ...+.++.+.|+++|+++.
T Consensus 228 ~~g-------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 228 NVG-------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CCC-------HHHHHHHHHHhccCcEEEE
Confidence 543 2567889999999999875
No 336
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=69.74 E-value=26 Score=31.62 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=53.9
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-----cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-----QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-----~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |.. +++..+..+|+++|.+++.++.++....-.+.+.... ..+ ....+.+|+|+-
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 356788898889963 332 2333333379999999887766544321111221100 000 011235888887
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
.-. . ...+..+.+.|+++ |+++..
T Consensus 263 ~~g-----~-~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 263 CIG-----N-VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCC-----C-hHHHHHHHHhhccCCCeEEEE
Confidence 532 1 34678888999997 888753
No 337
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=68.92 E-value=8.7 Score=40.19 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHH--hCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc----
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELA--KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL---- 170 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~--~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~---- 170 (282)
...+||+|.|--.++.... +...|+.+|.-+-.-- .-+....|++.|...+.- .....+|.+.|.++|-.-
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~--~~~~~~D~vtailSLGAAaA~a 900 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAW--WNGTPFDAVTAILSLGAAAASA 900 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCG--GCC---SEEEECTCHHHHHHHC
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeecccccee--EecCCCCEEEEEeeehhhhhcC
Confidence 5679999999655555544 6789999999874321 112334688888753211 234679999999887644
Q ss_pred -CCHHHHHHHHHHcccCCcE--EEEEE
Q 023470 171 -QQPEKVFAEVFRVLKPGGV--FIVSF 194 (282)
Q Consensus 171 -~~~~~~l~~~~r~LkpgG~--li~~~ 194 (282)
-+..+.++.+.+.+++.|. +++.+
T Consensus 901 ~~tl~~~l~~~l~~~~~~~~~~l~lQL 927 (1289)
T PF06016_consen 901 NVTLDAGLQQFLSQCVQANVKRLWLQL 927 (1289)
T ss_dssp T--HHHHHHHHHHHHHCTT-SEEEEE-
T ss_pred CCcHHHHHHHHHHHHHhCCccEEEEEe
Confidence 2778899999999998886 55553
No 338
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=67.85 E-value=9.4 Score=33.93 Aligned_cols=92 Identities=22% Similarity=0.134 Sum_probs=58.2
Q ss_pred CeEEEeCCcccc-hhhhhc--CCCeEEEEcCCHHHHHhCCCCCceE--EeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSSWVS-HLPQEV--SYKRVVGHGLNAQELAKNPRLEYFI--VKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG~~~-~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~--~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+|.=||.|... -.++.. -+.+|+-+|+|.+-+..-....... ....+. .++...-...|+++..--+---..|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~-~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP-SNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH-HHHHHHhhhccEEEEEEEecCCCCc
Confidence 456777877432 222222 5789999999987776544322111 111111 2333233568999887666666677
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
.-+.+++.+.+|||+.++
T Consensus 248 kLvt~e~vk~MkpGsViv 265 (371)
T COG0686 248 KLVTREMVKQMKPGSVIV 265 (371)
T ss_pred eehhHHHHHhcCCCcEEE
Confidence 779999999999999886
No 339
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=67.49 E-value=17 Score=32.29 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=24.9
Q ss_pred CCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCC
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~ 136 (282)
.++..++|.=.|.|. .+....+.++++|+|.++.+++.++.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKE 62 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHH
Confidence 467889997444443 34444466999999999999976543
No 340
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.02 E-value=28 Score=31.48 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=53.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccC----C-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQK----L-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~----l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|||. |.. +++..+..+|+++|.+++.++.+++..--.+.+... +.. + ....+.+|+|+-
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 456788899899973 332 233334348999999988776654432111122110 000 0 011125788876
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
.-. . ...+.+..+.+++| |++++.
T Consensus 262 ~~G-----~-~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 262 CIG-----N-VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCCeEEEE
Confidence 533 2 34678888999886 987643
No 341
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=66.55 E-value=76 Score=29.08 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=54.8
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccC----C-C-CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK----L-E-FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~----l-~-~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |.. +++..+...|+.+|.+++-++.+++..- ...+...... + . .....+|+|+-
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-eEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 355677877799973 322 3333344457777888866655544321 1111110000 1 0 11235898886
Q ss_pred cchhhc--------cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQY--------LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.-.-.. ..+....++++.+++++||++++.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 544210 012235889999999999998863
No 342
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.35 E-value=18 Score=32.67 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=48.8
Q ss_pred CCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHH-HhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 95 LRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQEL-AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l-~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
+.++.+||=.|||. |....+ ...+.++++++.+.+.. +.++...--.+.+......+....+.+|+|+-...
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---- 256 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---- 256 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC----
Confidence 34677888899973 332221 12456888888776432 22222211011111000011000124788876543
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|++||+++..
T Consensus 257 -~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 -A-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -C-HHHHHHHHHHhcCCcEEEEe
Confidence 1 34678899999999998754
No 343
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=65.99 E-value=30 Score=30.52 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=54.5
Q ss_pred hCCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC--CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL--EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l--~~~~~s~D~v~~~~ 165 (282)
.+.++.+||-.|+|. |..+.+. ..+.+|+++..+++..+..+....-.+.+.... ..+ ..++..+|+++.+.
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 456788899999863 3332221 256789999888776654332221111121110 111 01234589998764
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. -...+.++.+.|+++|.++..
T Consensus 236 g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 236 G------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred C------CHHHHHHHHHHHhcCCEEEEE
Confidence 2 134678899999999998743
No 344
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=65.79 E-value=20 Score=29.64 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=58.0
Q ss_pred CCCeEEEeCC---cccchhhhhc----CCCeEEEEcCCHHHHHhCC---CCCceEEeecccc---cCCC-CCCCceeEEE
Q 023470 97 PGSEVLDLMS---SWVSHLPQEV----SYKRVVGHGLNAQELAKNP---RLEYFIVKDLNQD---QKLE-FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGc---G~~~~~~~~~----~~~~v~giD~s~~~l~~~~---~~~~~~~~d~~~~---~~l~-~~~~s~D~v~ 162 (282)
+...|+++|. |...+.+..+ ...+|.++|++-+.+..+. ....++.++..+. +... ...+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4567999999 3333333322 3479999999966543221 1223444443221 1110 1112223556
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|..+-||....-+.++-..++|.-|-++++...
T Consensus 149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 666777776667788888999999999988743
No 345
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=65.65 E-value=56 Score=28.59 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=52.4
Q ss_pred hCCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+.++.+||=.|||. |..+.. ...+.+|++++.+++..+.++....-...+. ... ....+|+++.+..
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~---~~~--~~~~vD~vi~~~~---- 234 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDS---DDL--PPEPLDAAIIFAP---- 234 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEecc---Ccc--CCCcccEEEEcCC----
Confidence 345677777789963 322211 2256799999988876654433221111111 111 2345888775421
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 235 -~-~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 -V-GALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred -c-HHHHHHHHHHhhcCCEEEEE
Confidence 1 34788999999999998853
No 346
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=65.41 E-value=39 Score=29.81 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=50.3
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccc------cCCCCCCCceeEEEecchhhc
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD------QKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++|+=+||| .|.+++... .+..|+.++-+++.++.-+....+.+.+-... ...+-..+.+|+|+.+-=-.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 578899997 444433322 45789999998755542221100111110000 00111224689887763211
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+...+++.+...+.++..++..
T Consensus 82 --~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 82 --DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred --hHHHHHHHHHhhCCCCCEEEEE
Confidence 4567888999999998865443
No 347
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=65.18 E-value=9.6 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~ 135 (282)
.++..++|.=||.|.+. +...+.++|+|+|.++.+++.++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak 61 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK 61 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 46788999988876543 33334589999999999987654
No 348
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=65.05 E-value=35 Score=31.48 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred CeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCC-CCCceEEeeccc-------c-----cCCCCCCCceeEEE
Q 023470 99 SEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQ-------D-----QKLEFDHCSFDAVV 162 (282)
Q Consensus 99 ~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~-------~-----~~l~~~~~s~D~v~ 162 (282)
.+|-=+|=|. |..++.. ..+.+|+|+||++..++.-+ +......-+... . ..-+..-...|+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 4555556552 3333332 27789999999998775432 222111111100 0 00011012456555
Q ss_pred ec----chhhccCCH---HHHHHHHHHcccCCcEEEEE
Q 023470 163 CA----VSVQYLQQP---EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~----~~l~~~~~~---~~~l~~~~r~LkpgG~li~~ 193 (282)
.+ +.=.+-+|. ..+.+.+.++||+|-.++++
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlE 127 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILE 127 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEe
Confidence 44 111233443 45888999999999999886
No 349
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=64.79 E-value=15 Score=31.86 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=46.0
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
+|.=||+| .|..++... .+.+|+++|.+++.++.+.......... ..... -...|+|+.+--...+ ..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~----~~~~~-~~~aDlVilavp~~~~---~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAS----TDLSL-LKDCDLVILALPIGLL---LPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccccc----CCHhH-hcCCCEEEEcCCHHHH---HHH
Confidence 46667887 344443322 4679999999998776543322111110 11111 1346888887543333 446
Q ss_pred HHHHHHcccCCcE
Q 023470 177 FAEVFRVLKPGGV 189 (282)
Q Consensus 177 l~~~~r~LkpgG~ 189 (282)
++++...++|+..
T Consensus 74 ~~~l~~~l~~~~i 86 (279)
T PRK07417 74 SEQLIPALPPEAI 86 (279)
T ss_pred HHHHHHhCCCCcE
Confidence 7788777877643
No 350
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=64.61 E-value=7 Score=36.61 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcc-cchhhhhc--CCCeEE------EEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSW-VSHLPQEV--SYKRVV------GHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~--~~~~v~------giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.+.+|+=||||. |...+... .+.+|+ ++|...+..+++... .|.+.++ .+. -...|+|++..-.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d-GF~v~~~---~Ea---~~~ADvVviLlPD 107 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-GFKVGTY---EEL---IPQADLVINLTPD 107 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc-CCccCCH---HHH---HHhCCEEEEcCCh
Confidence 678999999983 44333222 344555 445444444443322 2333332 111 2457888886433
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+.+++...||||..|.++
T Consensus 108 t-~--q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 108 K-Q--HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred H-H--HHHHHHHHHhhCCCCCEEEec
Confidence 3 1 233568999999999999887
No 351
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=64.59 E-value=35 Score=29.33 Aligned_cols=92 Identities=27% Similarity=0.255 Sum_probs=51.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c--cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D--QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~--~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++..||-.|| | .|..+... ..+.+|++++.+++..+..+........+... + ..+ . .+...+|+++.+
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEEC
Confidence 3456789999998 4 34333222 25678999998876654432221101111100 0 000 0 123458988875
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
.. ...+..+.+.++++|.++.
T Consensus 216 ~g-------~~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 216 VG-------GDVFEASLRSLAWGGRLLV 236 (323)
T ss_pred cc-------HHHHHHHHHhhccCCEEEE
Confidence 43 1345677889999999874
No 352
>PLN02494 adenosylhomocysteinase
Probab=64.35 E-value=10 Score=35.68 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 96 RPGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+.+|+=+|+|. |..++... -+.+|+++|.++.....+.... +.+..+. +.+ ...|+|++.-. .
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-~~vv~le--Eal----~~ADVVI~tTG-----t 319 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-YQVLTLE--DVV----SEADIFVTTTG-----N 319 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-CeeccHH--HHH----hhCCEEEECCC-----C
Confidence 3578999999983 44333322 4679999999875322221111 1112221 111 24689887433 2
Q ss_pred HHHHHHHHHHcccCCcEEEEE
Q 023470 173 PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+..+....+|+||.++..
T Consensus 320 ~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 320 KDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred ccchHHHHHhcCCCCCEEEEc
Confidence 222347888899999998865
No 353
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=63.88 E-value=35 Score=30.46 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=50.8
Q ss_pred CCCeEEEeCCcc-cch---hhhhcCCC-eEEEEcCCHHHHHhCCCCCceEEeecccc---------cCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSW-VSH---LPQEVSYK-RVVGHGLNAQELAKNPRLEYFIVKDLNQD---------QKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~---~~~~~~~~-~v~giD~s~~~l~~~~~~~~~~~~d~~~~---------~~l~~~~~s~D~v~ 162 (282)
++.+||=.|+|. |.. ++.. .+. +|++++.+++..+..++..--.+.+.... ..+ .....+|+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~~~d~vi 254 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL-AGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDI-TGGRGADVVI 254 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHH-hCCCCCcEEE
Confidence 677788889963 332 2232 345 89999988876554433221111111100 011 1124589998
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+.. ....+.+..+.|+++|+++..
T Consensus 255 d~~g------~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 255 EASG------HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred ECCC------ChHHHHHHHHHhccCCEEEEE
Confidence 6532 134678889999999999854
No 354
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=63.75 E-value=37 Score=30.82 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=53.3
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc----c-----cCCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ----D-----QKLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~----~-----~~l~~~~~s~D~ 160 (282)
.+.++.+||=.|||. |.. ++...+...|++++.+++..+.++....-.+.+... + ..+ .....+|+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDv 278 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGADI 278 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCCE
Confidence 455677887779973 322 233334337999998886554433222101111100 0 111 12345898
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.+.. +....+.++.+.|+++|+++..
T Consensus 279 vld~~g-----~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 279 QVEAAG-----APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEECCC-----CcHHHHHHHHHHHHcCCEEEEE
Confidence 887533 3355788889999999998853
No 355
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=63.36 E-value=5.1 Score=33.58 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhCCC--CCeEEEeCCcccchhhhh-----cCCCeEEEEcCCHHHHHhCC
Q 023470 82 GFISTLTNLYRQMLRP--GSEVLDLMSSWVSHLPQE-----VSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~vLDiGcG~~~~~~~~-----~~~~~v~giD~s~~~l~~~~ 135 (282)
.+...+.+.....+.. +.++.|-+||.|..+--. ..-.+|+|.|+++++++.++
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 3444555555455533 457899999866543211 12368999999999987664
No 356
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=63.19 E-value=29 Score=31.76 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcccchh-------hhhc---CCCeEEEEcC----CHHHHHh--------CCCCC---ceEEeeccccc--
Q 023470 97 PGSEVLDLMSSWVSHL-------PQEV---SYKRVVGHGL----NAQELAK--------NPRLE---YFIVKDLNQDQ-- 149 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~-------~~~~---~~~~v~giD~----s~~~l~~--------~~~~~---~~~~~d~~~~~-- 149 (282)
+...|+|+|.|.|... +... +..+|||++. +...++. |+... +|........+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 4567999998754322 1111 4579999999 6544422 22211 22221111102
Q ss_pred ---CCCCCCCceeEEEecchhhccCC-------HHHHHHHHHHcccCCcEEEEE
Q 023470 150 ---KLEFDHCSFDAVVCAVSVQYLQQ-------PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 150 ---~l~~~~~s~D~v~~~~~l~~~~~-------~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+...++..=+|-|.+.|||+.+ +.+.+=...|-|+|.-.++++
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 23334444545556688899852 334455666788998665554
No 357
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.13 E-value=60 Score=28.72 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred hhCCCCCeEEEeCCcc-cch---hhhhcCCCe-EEEEcCCHHHHHhCCCCCceEEeecccccC-------C--CCCCCce
Q 023470 93 QMLRPGSEVLDLMSSW-VSH---LPQEVSYKR-VVGHGLNAQELAKNPRLEYFIVKDLNQDQK-------L--EFDHCSF 158 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~~---~~~~~~~~~-v~giD~s~~~l~~~~~~~~~~~~d~~~~~~-------l--~~~~~s~ 158 (282)
..+.++.+||-.|+|. |.. +++. .+.+ |++++.+++..+..+....-.+.+... .. + ......+
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKA-FGATKVVVTDIDPSRLEFAKELGATHTVNVRT-EDTPESAEKIAELLGGKGP 235 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHcCCcEEecccc-ccchhHHHHHHHHhCCCCC
Confidence 3456788888888863 322 2232 3445 899988876654433221111111110 01 0 1223458
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|+.+..- ...+.+..+.|+++|+++..
T Consensus 236 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTGA------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 999876431 33678899999999998753
No 358
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=62.96 E-value=39 Score=30.37 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=52.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-----cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-----QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-----~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=+|+|. |.. +++..+..+|+++|.+++.++.++....-.+.+.... ..+ ....+.+|+|+-
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid 260 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFE 260 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEE
Confidence 356788888889973 322 2333343479999999876665443321111111000 000 011235888886
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-. . ...+.++.+.|+++ |++++.
T Consensus 261 ~~g-----~-~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 261 CTG-----N-ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCC-----C-hHHHHHHHHhcccCCCEEEEE
Confidence 432 1 34678888999886 888754
No 359
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=62.95 E-value=26 Score=30.96 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCCC--CeEEEeCC-c-ccchh---hhhcCCC-eEEEEcCCHHHHHhCCC-CCceEEeeccc-c--cCC-CCCCCceeEE
Q 023470 95 LRPG--SEVLDLMS-S-WVSHL---PQEVSYK-RVVGHGLNAQELAKNPR-LEYFIVKDLNQ-D--QKL-EFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~--~~vLDiGc-G-~~~~~---~~~~~~~-~v~giD~s~~~l~~~~~-~~~~~~~d~~~-~--~~l-~~~~~s~D~v 161 (282)
+.++ .+||=.|+ | .|... ++. .+. +|++++.+++..+..+. ..--.+.+... + ..+ ...++.+|+|
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 4444 78888887 4 34332 222 355 79999999876544322 11111111111 0 000 1112469999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+.+.. . ..+.++.+.|+++|+++.
T Consensus 229 id~~g-----~--~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 229 FDNVG-----G--EISDTVISQMNENSHIIL 252 (345)
T ss_pred EECCC-----c--HHHHHHHHHhccCCEEEE
Confidence 86543 2 235788999999999885
No 360
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=62.43 E-value=14 Score=34.82 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=49.7
Q ss_pred CCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|+=+|+|. |..++... -+.+|+++|.++.....+... .+.+.++ .++ -...|+|++.-. .
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-G~~~~~l---eel---l~~ADIVI~atG-----t- 319 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-GYQVVTL---EDV---VETADIFVTATG-----N- 319 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-CceeccH---HHH---HhcCCEEEECCC-----c-
Confidence 578899999984 44443332 467899998876433222111 1222222 121 135799987632 2
Q ss_pred HHHH-HHHHHcccCCcEEEEE
Q 023470 174 EKVF-AEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l-~~~~r~LkpgG~li~~ 193 (282)
..++ .+....+|||++++-.
T Consensus 320 ~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ccccCHHHHhccCCCcEEEEc
Confidence 2244 4788899999998865
No 361
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.28 E-value=19 Score=31.81 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=49.2
Q ss_pred CCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|+=+|+|. |..+.... .+.+|+.+|.+++..+.+.... ...... .++...-..+|+|+..-- .
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G-~~~~~~---~~l~~~l~~aDiVI~t~p-----~- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMG-LSPFHL---SELAEEVGKIDIIFNTIP-----A- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-CeeecH---HHHHHHhCCCCEEEECCC-----h-
Confidence 478999999983 33332221 4579999999987665443322 111111 112111245899998531 1
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
...-+++...++||+.++
T Consensus 221 ~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 LVLTKEVLSKMPPEALII 238 (296)
T ss_pred hhhhHHHHHcCCCCcEEE
Confidence 223466778889987766
No 362
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.09 E-value=30 Score=25.22 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=54.3
Q ss_pred EEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEecchhhccCCHHH
Q 023470 101 VLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQPEK 175 (282)
Q Consensus 101 vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~~~~ 175 (282)
|+=+|+| .|..+.... .+.+|+.+|.+++.++..+.. ..++.+|......+. ..-...|.|++..- +...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC-----CHHH
Confidence 3457776 233333322 445899999999877654432 456777765431111 12246777777543 3333
Q ss_pred --HHHHHHHcccCCcEEEEEEcCchh
Q 023470 176 --VFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 176 --~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
.+....|-+-|...++..+.++..
T Consensus 76 n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 76 NLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred HHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 455566777788898888766544
No 363
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=61.92 E-value=3.1 Score=36.83 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=29.6
Q ss_pred ceeEEEecchhhcc-----CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 157 SFDAVVCAVSVQYL-----QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 157 s~D~v~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+.|+|+..|+++-+ ..-.++|..+...++||-.|+|+.
T Consensus 200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 57888888887655 334459999999999998887764
No 364
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=61.90 E-value=13 Score=31.72 Aligned_cols=69 Identities=4% Similarity=-0.120 Sum_probs=36.6
Q ss_pred CeEEEeCCcccchhhhh-----------cCCCeEEEEcCCHHHHHhCC----CC------CceEEeecccccCCCCCCCc
Q 023470 99 SEVLDLMSSWVSHLPQE-----------VSYKRVVGHGLNAQELAKNP----RL------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~-----------~~~~~v~giD~s~~~l~~~~----~~------~~~~~~d~~~~~~l~~~~~s 157 (282)
.+|+|+|+|.|..+... ....+++-+|+|+.+.+..+ .. ....+.......+.| .
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p----~ 95 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP----F 95 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----C
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----C
Confidence 68999999976543221 13479999999986553221 10 111122221102222 3
Q ss_pred eeEEEecchhhccC
Q 023470 158 FDAVVCAVSVQYLQ 171 (282)
Q Consensus 158 ~D~v~~~~~l~~~~ 171 (282)
.-+|+++.++..++
T Consensus 96 ~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 96 PGFIIANELFDALP 109 (252)
T ss_dssp CEEEEEESSGGGS-
T ss_pred CEEEEEeeehhcCc
Confidence 56888888888775
No 365
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=61.83 E-value=8.6 Score=35.09 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=47.8
Q ss_pred CCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 98 GSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 98 ~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
+.+|+=+|+|. |...+... -+.+|+.+|.+++.++.... ..............+.-.-..+|+|+..-.+.-.+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 45689999983 33332222 35689999999876543321 1111111111001111001357999976422111112
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
.-+-+++.+.+|||+.++
T Consensus 247 ~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 247 KLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCcCHHHHhcCCCCCEEE
Confidence 223366667789998876
No 366
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.58 E-value=42 Score=29.98 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=55.6
Q ss_pred hCCCCCeEEEeCC--cccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CC-CCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS--SWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EF-DHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~-~~~s~D~v~~ 163 (282)
.++++.+||=.|. |.|.. +++..+. .++++--|++-.+.+++...-.+.+.... +.+ .+ ....+|+|+.
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 3567899999997 34443 3333344 77777777665555554432222222110 111 11 2235999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.-. ...+.+..+.|+++|+++..
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEE
Confidence 766 55678899999999998764
No 367
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=61.52 E-value=19 Score=31.69 Aligned_cols=86 Identities=22% Similarity=0.117 Sum_probs=47.4
Q ss_pred CeEEEeCCc-ccchhhhhc--CC--CeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SY--KRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~--~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+|.=||+| .|..++... .+ .+|+++|.+++.++.+......... . .+....-...|+|+.+--....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~-~---~~~~~~~~~aDvViiavp~~~~--- 79 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRV-T---TSAAEAVKGADLVILCVPVGAS--- 79 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCcee-c---CCHHHHhcCCCEEEECCCHHHH---
Confidence 468888998 344443322 22 4899999998876654432210000 0 1111001346888876543222
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
..++.++...+++|+.++
T Consensus 80 ~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHhhCCCCCEEE
Confidence 456677777788887554
No 368
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=61.42 E-value=23 Score=32.22 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=49.1
Q ss_pred CCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHH-HHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQE-LAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~-l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+||=.|||. |....+ ...+.+|+++|.+.+. .+.++...--.+.+......+.-..+.+|+|+-.-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G----- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS----- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC-----
Confidence 3678888899973 332222 1245689999887543 333332221111111000001000024788876532
Q ss_pred CHHHHHHHHHHcccCCcEEEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...+..+.+.|++||.++..
T Consensus 252 -~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 -AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -cHHHHHHHHHhhcCCCEEEEE
Confidence 134678888999999998753
No 369
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.11 E-value=85 Score=27.74 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCC-CeEEEeCCcccchhhhhc-C-CCeEEEEcCCHHHHHhCC-----C-----CCceEEeecccc---cC
Q 023470 87 LTNLYRQMLRPG-SEVLDLMSSWVSHLPQEV-S-YKRVVGHGLNAQELAKNP-----R-----LEYFIVKDLNQD---QK 150 (282)
Q Consensus 87 ~~~~~~~~~~~~-~~vLDiGcG~~~~~~~~~-~-~~~v~giD~s~~~l~~~~-----~-----~~~~~~~d~~~~---~~ 150 (282)
+.+.+...+..+ ..|+-+|||.-...-+.- + +.+|+-+|.=+-+--+.+ . ...++-.|+..+ ..
T Consensus 81 fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 81 FDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 334444444444 569999999644333322 2 477777887653321111 1 224555565421 11
Q ss_pred C---CCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCchhH-HHH--HHhhhcCCCCcchhhHHHH
Q 023470 151 L---EFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNRMFY-EKA--ISAWRDGTAYGRVQLVVQY 222 (282)
Q Consensus 151 l---~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ 222 (282)
| .+..+.--++++-.++.+++. ..++|..+...+.||-.+++....+... ... ...+....... ....
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 236 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGED----LDRG 236 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccc----cccc
Confidence 2 233444557788888999963 3448999999999999988886522111 111 11111111100 0000
Q ss_pred HHhhCCCCchHHhhcCCCCcccccccc
Q 023470 223 FQCVEGYTNPEIVRKLPADSAAAQEDK 249 (282)
Q Consensus 223 ~~~~~gF~~~ei~~~~~~~g~~~~~~~ 249 (282)
-....|....|+...+...|+......
T Consensus 237 e~~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 237 ELVYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred cceeccCCHHHHHHHHHhcCEEEEecC
Confidence 011245667888888888888665553
No 370
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=60.58 E-value=41 Score=30.22 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=53.5
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc---c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ---D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~---~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |.. +++..+..+|+++|.+++.++.+++...-.+.+... . ..+ ....+.+|+++-
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid 263 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFE 263 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 356788899899973 322 333334348999999988776655433111111110 0 000 111235788876
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
.-. ....+..+.+.+++| |++++.
T Consensus 264 ~~G------~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 264 CTG------NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCC------ChHHHHHHHHHhhcCCCEEEEE
Confidence 432 144677788899996 888753
No 371
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=60.49 E-value=30 Score=31.12 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~~ 166 (282)
+.++.+||=.|+|. |.. +++..+...++++|.+++..+.++....-.+.+.... +.+ ......+|+|+-+-.
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 45678888889863 322 2333344479999999876654433221111111110 000 011345898886532
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 264 -----~-~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 264 -----V-PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred -----C-cHHHHHHHHHhccCCEEEEe
Confidence 1 34678899999999998854
No 372
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=58.67 E-value=57 Score=28.97 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=52.8
Q ss_pred hCCCCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||=.|+|. |... +...+...|++++.+++..+.++....-.+.+.... ..+ . ...+.+|+|+-+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~ 248 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDC 248 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEEC
Confidence 345677888889863 3322 222233389999998876655433221111121110 001 0 122348998875
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ....+..+.+.|+++|.++..
T Consensus 249 ~g------~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 249 AG------VQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CC------CHHHHHHHHHhccCCCEEEEE
Confidence 43 134678899999999998753
No 373
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=58.53 E-value=15 Score=32.33 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=47.1
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
+|-=||+| .|..++... .+.+|++.|.+++.++...........+. .++.......|+|+++---. ..+.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~---~~~~~~~~~~dvIi~~vp~~---~~~~v 75 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANL---RELSQRLSAPRVVWVMVPHG---IVDAV 75 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCH---HHHHhhcCCCCEEEEEcCch---HHHHH
Confidence 45668888 454444432 56799999999887654332211111111 11110112357877753211 23557
Q ss_pred HHHHHHcccCCcEEEEEE
Q 023470 177 FAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 177 l~~~~r~LkpgG~li~~~ 194 (282)
++++...|++| .+++..
T Consensus 76 ~~~l~~~l~~g-~ivid~ 92 (298)
T TIGR00872 76 LEELAPTLEKG-DIVIDG 92 (298)
T ss_pred HHHHHhhCCCC-CEEEEC
Confidence 77888888876 455553
No 374
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=58.43 E-value=49 Score=28.83 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=51.3
Q ss_pred hCCCCCeEEEeCC---cccchhhhhcCCCeEEEEcCCHHHHHh-CCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 94 MLRPGSEVLDLMS---SWVSHLPQEVSYKRVVGHGLNAQELAK-NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 94 ~~~~~~~vLDiGc---G~~~~~~~~~~~~~v~giD~s~~~l~~-~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.+.+++...|+|. ||...+-. .+..|+++|.-+-.-.. ..+.......|. ....-.....|-.+|-.|
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DG---fk~~P~r~~idWmVCDmV--- 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDG---FKFRPTRSNIDWMVCDMV--- 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccC---cccccCCCCCceEEeehh---
Confidence 4567899999998 67666655 77899999987632221 112222222222 222212456888888665
Q ss_pred cCCHHHHHHHHHHcccCC
Q 023470 170 LQQPEKVFAEVFRVLKPG 187 (282)
Q Consensus 170 ~~~~~~~l~~~~r~Lkpg 187 (282)
..|.++-.-|..+|..|
T Consensus 280 -EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -EKPARVAALIAKWLVNG 296 (358)
T ss_pred -cCcHHHHHHHHHHHHcc
Confidence 45566666677777654
No 375
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=58.26 E-value=51 Score=29.14 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCe-EEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKR-VVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~-v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
..++.+||-.|+|. |.. ++.. .+.+ |++++-+++..+.++....-.+.+.... ..+ . ...+.+|+|+.+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~ 237 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKA-SGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM 237 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence 45677777788863 322 2222 3454 8888888765544333221111111100 011 1 123458999875
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. -...+.++.+.|+++|+++..
T Consensus 238 ~g------~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 238 SG------APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CC------CHHHHHHHHHhhcCCCEEEEE
Confidence 32 135678899999999998754
No 376
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.21 E-value=17 Score=33.16 Aligned_cols=36 Identities=8% Similarity=-0.126 Sum_probs=25.8
Q ss_pred CCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHh
Q 023470 98 GSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAK 133 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~ 133 (282)
-..|+|+|.|.|. .+.....+..|.|||-|....++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~r 191 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVER 191 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHH
Confidence 3569999998764 33344467899999999755443
No 377
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.62 E-value=39 Score=32.60 Aligned_cols=94 Identities=7% Similarity=-0.046 Sum_probs=57.7
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+|+=+||| .|..+++.. .+.+++.+|.+++.++..++. .....+|..+.+.+. ..-+..|.+++.-. |.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~-----~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP-----NG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC-----Ch
Confidence 568889998 466665543 567999999999988766543 356777775432221 12246776655321 32
Q ss_pred HH--HHHHHHHcccCCcEEEEEEcCc
Q 023470 174 EK--VFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 174 ~~--~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++ .+-...|.+.|...++....++
T Consensus 493 ~~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 493 YEAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 22 2334456667887777665544
No 378
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.91 E-value=43 Score=32.72 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=60.6
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+|+=+|+| .|..+++.. .+..++.+|.+++.++..++. .....+|....+.+. ..-+..|++++.. +|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~-----~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC-----NEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe-----CCH
Confidence 568889998 455555433 567999999999988766543 356777775432121 1124567777753 244
Q ss_pred HH--HHHHHHHcccCCcEEEEEEcCchh
Q 023470 174 EK--VFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 174 ~~--~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
+. .+-...|-+.|...++....++..
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 44 344456667888888877665533
No 379
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.35 E-value=11 Score=37.15 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=25.7
Q ss_pred CceeEEEecc-hhhccCCH--HHHHHHHHHcccCCcEEEE
Q 023470 156 CSFDAVVCAV-SVQYLQQP--EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 156 ~s~D~v~~~~-~l~~~~~~--~~~l~~~~r~LkpgG~li~ 192 (282)
..+|+++.-. +-.+-++. +++|+.+.|.++|||.+.-
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 4588888752 22222211 5699999999999999873
No 380
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.71 E-value=53 Score=28.95 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCe-EEEEcCCHHHHHhCCCCCceEEeeccc--ccCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKR-VVGHGLNAQELAKNPRLEYFIVKDLNQ--DQKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~-v~giD~s~~~l~~~~~~~~~~~~d~~~--~~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+|. |.. +++. .+.+ +++++-+++..+..+....-.+.+... ...+ . .....+|+++.+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~-~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKI-LGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 345778888889864 222 2222 3444 999998877655432221111111100 0111 1 122348999865
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. .....+..+.+.|+++|.++..
T Consensus 235 ~------g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 A------GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred C------CCHHHHHHHHHHhhcCCEEEEE
Confidence 2 1245678899999999998753
No 381
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=54.89 E-value=70 Score=28.24 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c-----cCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D-----QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~-----~~l~~~~~s~D~v~~~ 164 (282)
+.++.+||=.|+|. |.. +++..+..+|+++|.++...+.++...--.+.+... + ..+ .....+|+|+.+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~ 242 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEA 242 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEEC
Confidence 45677777689863 322 233334368999998877655433222101111110 0 011 123458988865
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. .. ...+..+.+.|+++|.++..
T Consensus 243 ~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 243 V-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred C-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 3 22 34678888999999998743
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=54.87 E-value=49 Score=29.68 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=50.5
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC--CCCCCceeEEEecch
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL--EFDHCSFDAVVCAVS 166 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l--~~~~~s~D~v~~~~~ 166 (282)
.++.+||=.|+|. |.. ++...+...+++++.+++..+.++....-.+.+.... ..+ ...+..+|+|+....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg 265 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALG 265 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCC
Confidence 4667777778862 332 2232233349999988876554432221111111100 000 112356899887532
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ..+.++.+.|+++|.++..
T Consensus 266 -----~~-~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 266 -----KP-ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred -----CH-HHHHHHHHHHhcCCEEEEE
Confidence 21 3678899999999998754
No 383
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=54.41 E-value=67 Score=27.87 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCCCCeEEEeCCc--ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC--CCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSS--WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL--EFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG--~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l--~~~~~s~D~v~~~~ 165 (282)
+.++.+||=.|.| .|...... ..+.+++.++.+++..+.+.....-...+.... ..+ ......+|+++.+.
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 243 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHV 243 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence 4567788888874 34333222 256789999988765544322211111122110 000 01224589998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 244 g-------~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 244 G-------AATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred c-------HHHHHHHHHHhhcCCEEEEE
Confidence 4 23567788899999998754
No 384
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=54.31 E-value=26 Score=27.93 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=15.1
Q ss_pred HHHHHHHHHcccCCcEEEEEEcC
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+.+++-+++.|.|||+++++...
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~ 88 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVE 88 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT
T ss_pred HHHHHHHHHHhhhcCeEEEEEec
Confidence 34889999999999999999654
No 385
>PRK10083 putative oxidoreductase; Provisional
Probab=54.19 E-value=47 Score=29.25 Aligned_cols=94 Identities=13% Similarity=-0.001 Sum_probs=51.3
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhh-cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c--cCCCCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQE-VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D--QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~-~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~--~~l~~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|+|. |.. +++. ++...++++|.+++..+.+++..--.+.+... + ..+.-....+|+|+...
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~ 236 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAA 236 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECC
Confidence 345678888899863 332 2232 24446889999887665543322111111110 0 11111112245666543
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+.+..+.|+++|+++..
T Consensus 237 g-----~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 237 C-----H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred C-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 2 1 34678889999999998753
No 386
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.17 E-value=12 Score=31.71 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=53.7
Q ss_pred CeEEEeCC--c-ccchhhhhc------CC---CeEEEEcCCHHHHHhCCCCCceEEeecccccC----C-CCCCCceeEE
Q 023470 99 SEVLDLMS--S-WVSHLPQEV------SY---KRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK----L-EFDHCSFDAV 161 (282)
Q Consensus 99 ~~vLDiGc--G-~~~~~~~~~------~~---~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~----l-~~~~~s~D~v 161 (282)
.+++|+++ | |...+.+.. .+ ..|+++|+-+-+- . ...--.++|++.... + .|..+..|+|
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-I--~GV~qlq~DIT~~stae~Ii~hfggekAdlV 119 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-I--EGVIQLQGDITSASTAEAIIEHFGGEKADLV 119 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-c--CceEEeecccCCHhHHHHHHHHhCCCCccEE
Confidence 46899977 5 444444332 11 2499999876311 0 001124555543211 1 2445688999
Q ss_pred Eecc-----hhhccCCH------HHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAV-----SVQYLQQP------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~-----~l~~~~~~------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|-. .+|.+... ..+|.-...+|||||.|+-.+-
T Consensus 120 vcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 120 VCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred EeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 9985 34444311 2367778899999999986543
No 387
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=53.62 E-value=90 Score=28.95 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=49.3
Q ss_pred CeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCC-CCCceEEeeccc-------ccCCC--CCCCceeEEEecc
Q 023470 99 SEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQ-------DQKLE--FDHCSFDAVVCAV 165 (282)
Q Consensus 99 ~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~-------~~~l~--~~~~s~D~v~~~~ 165 (282)
.+|.=||.|. |..++..+ .+.+|+++|++++.++.-+ +...+...++.. ...+. ......|+|+.+-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 3577788883 44444332 5689999999998776422 111110000000 00000 0012467776653
Q ss_pred hhh-------ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQ-------YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~-------~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
--- .+.....+++.+...|++|-.+++.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 321 1123345678888999998777664
No 388
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=53.57 E-value=11 Score=34.55 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=40.7
Q ss_pred CeEEEeCCc-ccchhhhhc---CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 99 SEVLDLMSS-WVSHLPQEV---SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~---~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.+||=|||| .|+..+... ...+|+..|-|.+..++... .....+.|+.....+.---..+|+|++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 468999997 455444332 33799999999887765533 34566677644322210113358888873
No 389
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.06 E-value=50 Score=27.24 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhC----C--CCCceEEeecccccCC-------CCCCCcee
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKN----P--RLEYFIVKDLNQDQKL-------EFDHCSFD 159 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~----~--~~~~~~~~d~~~~~~l-------~~~~~s~D 159 (282)
++.+||=.|+ |.|..+.+.. .+.+|++++-+++.+... . ....+..+|+.....+ ...-+.+|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3567999998 3565555443 577999999987644221 1 1234556665432111 00013468
Q ss_pred EEEecchhhccC---C--------------HHHHHHHHHHcccCCcEEEEE
Q 023470 160 AVVCAVSVQYLQ---Q--------------PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++.+....... + +..+++.+...++++|.+++.
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 777765321110 1 112356666677788887765
No 390
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.88 E-value=17 Score=32.48 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=51.7
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCC--ceE-Eeecccc--c-CCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLE--YFI-VKDLNQD--Q-KLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~--~~~-~~d~~~~--~-~l~~~~~s~D~v~~~ 164 (282)
+.+++++.=+|+|. |.. -++..+..+|+|+|++++-.++++... +++ -.|.... + -...-++-+|.-+-
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfE- 268 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFE- 268 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEE-
Confidence 45677777777752 221 233447889999999999888887654 111 0111100 0 00122455565442
Q ss_pred chhhccCCHHHHHHHHHHcccCC-cEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPG-GVFIV 192 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~Lkpg-G~li~ 192 (282)
.+.+ ..+++++....+.| |.-++
T Consensus 269 ----c~G~-~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 269 ----CIGN-VSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred ----ecCC-HHHHHHHHHHhhcCCCeEEE
Confidence 2222 45667777777888 88654
No 391
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=52.78 E-value=4.8 Score=34.22 Aligned_cols=67 Identities=19% Similarity=0.095 Sum_probs=30.5
Q ss_pred CeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHH-------HhCC---CC-------CceEEeecccccCCCCCCCcee
Q 023470 99 SEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQEL-------AKNP---RL-------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 99 ~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l-------~~~~---~~-------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+|||.=||.|. .+... -+++|++++-|+-+- ..+. .. .....+|.. +-|..++++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~--~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL--EYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC--CHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH--HHHhhcCCCCC
Confidence 389999999875 33333 367999999998432 2211 11 123333332 33445678999
Q ss_pred EEEecchhh
Q 023470 160 AVVCAVSVQ 168 (282)
Q Consensus 160 ~v~~~~~l~ 168 (282)
+|..-=.+.
T Consensus 154 VVY~DPMFp 162 (234)
T PF04445_consen 154 VVYFDPMFP 162 (234)
T ss_dssp EEEE--S--
T ss_pred EEEECCCCC
Confidence 999864443
No 392
>PRK08324 short chain dehydrogenase; Validated
Probab=52.16 E-value=25 Score=34.85 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCC--C-----CCCcee
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLE--F-----DHCSFD 159 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~--~-----~~~s~D 159 (282)
++.+||=.|+ |.|..++... .+.+|+.+|.++..++... ....+..+|+.....+. + .-+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3567899997 3565554433 5679999999986543211 12345566664321110 0 123589
Q ss_pred EEEecchhhccCC-------------------HHHHHHHHHHcccC---CcEEEEE
Q 023470 160 AVVCAVSVQYLQQ-------------------PEKVFAEVFRVLKP---GGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~li~~ 193 (282)
+|+.+-....... ...+++.+.+.++. ||.+++.
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9998865432211 12356667777766 6777764
No 393
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=52.02 E-value=7.8 Score=37.49 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=54.0
Q ss_pred hhCCCCCeEEEeCC---cccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccc-cCCC----CCCCceeEEEe
Q 023470 93 QMLRPGSEVLDLMS---SWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-QKLE----FDHCSFDAVVC 163 (282)
Q Consensus 93 ~~~~~~~~vLDiGc---G~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-~~l~----~~~~s~D~v~~ 163 (282)
.++.++..|||+|| ||.....+.+ .+.-|+|+|+-+--. -..+.-.+.|++.+ ...+ +.....|+|+.
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp---~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLh 116 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP---IPNCDTLVEDITTDECRSKLRKILKTWKADVVLH 116 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc---CCccchhhhhhhHHHHHHHHHHHHHhCCCcEEee
Confidence 45678888999999 4655555544 467899999987311 01112234444332 0000 12234577776
Q ss_pred cchh----hccCCH-------HHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSV----QYLQQP-------EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l----~~~~~~-------~~~l~~~~r~LkpgG~li~~ 193 (282)
-.+- .|+.|. -.+++-+...|..||.++-.
T Consensus 117 DgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 117 DGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred cCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 5432 122111 12566677888999996644
No 394
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.94 E-value=59 Score=31.96 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=58.5
Q ss_pred CCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEecchhhccCC
Q 023470 98 GSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+|+=+||| .|..+++.. .+..++.+|.+++.++..++. .....+|....+-+. ..-++.|++++.. +|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~-----~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI-----DD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----CC
Confidence 3679999998 455555432 567999999999988765543 356777775432121 1224567777754 24
Q ss_pred HHH--HHHHHHHcccCCcEEEEEEcCc
Q 023470 173 PEK--VFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 173 ~~~--~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+. .+-...|-+.|.-.++.-..++
T Consensus 475 ~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 475 PQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 444 3444555667777776655444
No 395
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=51.86 E-value=47 Score=31.64 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCCeEEEeCCcccchhhhhc-------CCCeEEEEcCCHHHHHhCCCCC--------c--eEEeecccccCCCC-CCCce
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-------SYKRVVGHGLNAQELAKNPRLE--------Y--FIVKDLNQDQKLEF-DHCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-------~~~~v~giD~s~~~l~~~~~~~--------~--~~~~d~~~~~~l~~-~~~s~ 158 (282)
++..|.|..||+|.++.... ....++|-+....+...+..+. . ...++.. ..... ....|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl--~~~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTL--TTKEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcC--CCccccccccC
Confidence 44679999999887665321 1246899999987765443210 1 1111110 11111 23457
Q ss_pred eEEEecc--hh------------------hcc----C-CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 159 DAVVCAV--SV------------------QYL----Q-QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 159 D~v~~~~--~l------------------~~~----~-~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+|+++- .. .|+ . .-..++..+..+|++||+..+..++.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 7777662 11 111 1 12247888999999999987776653
No 396
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=51.77 E-value=75 Score=27.10 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=51.7
Q ss_pred hCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||=.|+ | .|..+.. ...+.++++++.+++..+..+... .......... ..+ . .....+|+++.+
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~ 212 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDG 212 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEEC
Confidence 3456788888885 4 3333222 125678999998877655433222 1111110000 000 0 123458999875
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. . ..+..+.+.|+++|.++..
T Consensus 213 ~~-----~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 213 VG-----K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CC-----c--HhHHHHHHhhccCcEEEEE
Confidence 43 2 3567788999999998743
No 397
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.68 E-value=1.4e+02 Score=24.79 Aligned_cols=88 Identities=20% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCCeEEEeCC-cccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 96 RPGSEVLDLMS-SWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 96 ~~~~~vLDiGc-G~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
....+||=+|. =||.+.+... ..++|+.+|+.+.|-..-+....|. ..+.+..+.+|+|+-.-.|--+. |
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr-------~~~~~~~G~~DlivDlTGlGG~~-P 114 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFR-------NLLKFIRGEVDLIVDLTGLGGIE-P 114 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHh-------hhcCCCCCceeEEEeccccCCCC-H
Confidence 35678999998 3566655544 5789999999999876655543321 23445568899999988877663 2
Q ss_pred HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..+-+.|+ .+++..|..
T Consensus 115 -----e~L~~fnp~-vfiVEdP~g 132 (254)
T COG4017 115 -----EFLAKFNPK-VFIVEDPKG 132 (254)
T ss_pred -----HHHhccCCc-eEEEECCCC
Confidence 344455664 667776654
No 398
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=51.43 E-value=33 Score=31.16 Aligned_cols=37 Identities=3% Similarity=-0.154 Sum_probs=25.8
Q ss_pred CCCeEEEeCCcccchhhh-------h----cCCCeEEEEcCCHHHHHh
Q 023470 97 PGSEVLDLMSSWVSHLPQ-------E----VSYKRVVGHGLNAQELAK 133 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~-------~----~~~~~v~giD~s~~~l~~ 133 (282)
....++|+|.|.|..+.. . ....++.-|++|++..++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 356799999987654321 1 146899999999976543
No 399
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=51.38 E-value=69 Score=28.77 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=52.1
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc---c--cCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ---D--QKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~---~--~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |.. +++..+...|++++.+++..+.+++...-.+.+... + ..+ ....+.+|+|+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid 259 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFE 259 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEE
Confidence 345677888789963 222 233334446899998877655443222101111100 0 000 011245898886
Q ss_pred cchhhccCCHHHHHHHHHHccc-CCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLK-PGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~~ 193 (282)
... . ...+..+.+.|+ ++|.++..
T Consensus 260 ~~g-----~-~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 260 VIG-----S-ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCC-----C-HHHHHHHHHHhccCCCEEEEE
Confidence 532 1 356788899999 99998854
No 400
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=51.04 E-value=11 Score=32.54 Aligned_cols=65 Identities=28% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 117 SYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 117 ~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
...+|+|+|.++..++.+.+.. .....+. +.+ ..+|+|+.+-=+..+ ..+++++...+++|+.+.
T Consensus 10 ~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~---~~~----~~~DlvvlavP~~~~---~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 10 PDVEVYGYDRDPETLEAALELGIIDEASTDI---EAV----EDADLVVLAVPVSAI---EDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp TTSEEEEE-SSHHHHHHHHHTTSSSEEESHH---HHG----GCCSEEEE-S-HHHH---HHHHHHHHCGS-TTSEEE
T ss_pred CCeEEEEEeCCHHHHHHHHHCCCeeeccCCH---hHh----cCCCEEEEcCCHHHH---HHHHHHhhhhcCCCcEEE
Confidence 4689999999999887764332 2111111 111 235898887654443 678899999888886654
No 401
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.53 E-value=35 Score=28.74 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=42.4
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHh-CC--CCCceEEeecccc---cCCCCCCCceeEEEecc
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAK-NP--RLEYFIVKDLNQD---QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~-~~--~~~~~~~~d~~~~---~~l~~~~~s~D~v~~~~ 165 (282)
++++=+||| .|..+++.+ .+..|+.+|.+++.++. .. .....+++|.... .+.. -..+|++++.-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~ag--i~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAG--IDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcC--CCcCCEEEEee
Confidence 357889998 456666554 56799999999998876 22 2334556666432 2233 35688888864
No 402
>PLN02702 L-idonate 5-dehydrogenase
Probab=50.27 E-value=90 Score=27.92 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecc---cc--cC---C-CCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLN---QD--QK---L-EFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~---~~--~~---l-~~~~~s~D~v 161 (282)
+.++.+||=+|+|. |. .++...+...|+++|.+++..+.++....-.+.+.. .+ .. + ....+.+|+|
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence 45677888889862 22 233333445689999987766544332211111110 00 00 1 0112458888
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+.. . ...+..+.+.|+++|+++..
T Consensus 259 id~~g-----~-~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 259 FDCVG-----F-NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEEE
Confidence 87532 1 34678999999999997643
No 403
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=50.21 E-value=85 Score=28.10 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=51.8
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c--cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D--QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~--~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+|. |.. ++...+...|++++.+++..+..+...--.+.+... + ..+ . .+...+|+++.+
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~ 258 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEA 258 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEc
Confidence 345677888888862 322 233333335999988876655433221111111110 0 011 1 123558988864
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. . ...+.++.+.|+++|+++..
T Consensus 259 ~~-----~-~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 259 VG-----R-AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CC-----C-hHHHHHHHHHhhcCCeEEEE
Confidence 32 1 34678899999999998754
No 404
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=49.93 E-value=16 Score=33.78 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHh
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAK 133 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~ 133 (282)
..+.+....+++..|-|+-||.|-+... ...+++|++-|.++++++.
T Consensus 239 Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~ 286 (495)
T KOG2078|consen 239 EHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKW 286 (495)
T ss_pred HHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHH
Confidence 4445555667888999999998865443 3477999999999998853
No 405
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.93 E-value=13 Score=29.92 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=46.4
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchh----hc
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV----QY 169 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l----~~ 169 (282)
.+.+|.=+|+| .|..+++.. -+.+|++.|.+........... +...++ +++ -...|+|+...-+ +|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-~~~~~l---~el---l~~aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-VEYVSL---DEL---LAQADIVSLHLPLTPETRG 107 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-EEESSH---HHH---HHH-SEEEE-SSSSTTTTT
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-ceeeeh---hhh---cchhhhhhhhhccccccce
Confidence 47889999998 566555543 4679999999987544111110 112222 111 1346777775432 22
Q ss_pred cCCHHHHHHHHHHcccCCcEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+-+ ++....+|+|.+|+-
T Consensus 108 li~-----~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 108 LIN-----AEFLAKMKPGAVLVN 125 (178)
T ss_dssp SBS-----HHHHHTSTTTEEEEE
T ss_pred eee-----eeeeeccccceEEEe
Confidence 223 567778888765553
No 406
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=49.92 E-value=1.1e+02 Score=27.80 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=52.0
Q ss_pred hCCCCCeEEEeCC-c-ccchhh--hhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---------------------
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLP--QEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--------------------- 148 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--------------------- 148 (282)
.+.++.+||=.|+ | .|.... ....+.++++++.+++..+.+++.....+.+....
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEA 269 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhcc
Confidence 3456788998998 5 333221 22256788889988876655443321111111000
Q ss_pred -------cCCCCCCC-ceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 149 -------QKLEFDHC-SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 149 -------~~l~~~~~-s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+. ... .+|+|+.+.. ...+.+..+.|+++|.++..
T Consensus 270 ~~~~~~v~~l~-~~~~g~d~vid~~g-------~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 270 RRFGKAIWDIL-GGREDPDIVFEHPG-------RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred chHHHHHHHHh-CCCCCCeEEEECCc-------hHhHHHHHHHhccCCEEEEE
Confidence 0000 112 5888887533 13467788999999998864
No 407
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.88 E-value=50 Score=30.35 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCCCCeEEEeC-Cc-ccch---hhhhc--CCCeEEEEcCCHHHHHhCCCC--------C-ceEEeecccccCC-----CC
Q 023470 95 LRPGSEVLDLM-SS-WVSH---LPQEV--SYKRVVGHGLNAQELAKNPRL--------E-YFIVKDLNQDQKL-----EF 153 (282)
Q Consensus 95 ~~~~~~vLDiG-cG-~~~~---~~~~~--~~~~v~giD~s~~~l~~~~~~--------~-~~~~~d~~~~~~l-----~~ 153 (282)
+.++.+||=+| +| .|.. ++... +..+|+++|.+++.++.++.. . ...+.+.....++ .+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 45677888887 56 3332 22322 224799999999877665543 1 1111221100010 01
Q ss_pred -CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 154 -DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 154 -~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....+|+|+.... . ...+....+.|+++|.+++.
T Consensus 253 t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2235888876432 1 45778889999998876653
No 408
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=49.72 E-value=11 Score=35.04 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=28.0
Q ss_pred CeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCC
Q 023470 99 SEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 99 ~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~ 135 (282)
..|||||.|+|. .++...++-.|++++.-+-|...++
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ar 106 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLAR 106 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHH
Confidence 358999999875 3444446778999999988886654
No 409
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=49.53 E-value=33 Score=30.78 Aligned_cols=87 Identities=20% Similarity=0.120 Sum_probs=48.8
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|.=||+| .|...+... .+.+|++.|......+.+.... +.+.++ .++ -...|+|+...-.. .-
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-~~v~sl---~Ea---ak~ADVV~llLPd~---~t 84 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-FEVMSV---SEA---VRTAQVVQMLLPDE---QQ 84 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-CEECCH---HHH---HhcCCEEEEeCCCh---HH
Confidence 56788889998 455444433 5678888765443332222211 122222 121 13468888754321 11
Q ss_pred HHHH-HHHHHcccCCcEEEEE
Q 023470 174 EKVF-AEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l-~~~~r~LkpgG~li~~ 193 (282)
..++ .++...||||..|+|+
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEEC
Confidence 2344 5789999999999876
No 410
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=49.44 E-value=27 Score=28.21 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCC-eEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHH------HhCC----CCCceEEeecccc---cCC---CCCCC
Q 023470 97 PGS-EVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQEL------AKNP----RLEYFIVKDLNQD---QKL---EFDHC 156 (282)
Q Consensus 97 ~~~-~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l------~~~~----~~~~~~~~d~~~~---~~l---~~~~~ 156 (282)
++. .|+-+|||.-. .+....++..++-+|.-.-+- .... ....++..|+... ..+ .+..+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 444 89999999533 232222366777777765322 2221 1124566666532 111 23345
Q ss_pred ceeEEEecchhhccC
Q 023470 157 SFDAVVCAVSVQYLQ 171 (282)
Q Consensus 157 s~D~v~~~~~l~~~~ 171 (282)
.--++++-.++.+++
T Consensus 157 ~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLS 171 (183)
T ss_dssp SEEEEEEESSGGGS-
T ss_pred CCeEEEEcchhhcCC
Confidence 556777777788884
No 411
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=49.00 E-value=29 Score=31.85 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=26.6
Q ss_pred hCCCCCeEEEeCCccc---chhhhhcCCCeEEEEcCCHHHHH
Q 023470 94 MLRPGSEVLDLMSSWV---SHLPQEVSYKRVVGHGLNAQELA 132 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~---~~~~~~~~~~~v~giD~s~~~l~ 132 (282)
.+.++.+||-|.+|.. .++.. ...+|++||+|+.+++
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~a 71 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNA 71 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHH
Confidence 4568889999977532 33333 5689999999997653
No 412
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=48.94 E-value=80 Score=27.42 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCcc------cch-hhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW------VSH-LPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~------~~~-~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++..++||.+|+|. |.. +.+-+ .++-++-.|+.+-. ......+++|. ..+.. +..+|+|+|-.-
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----SDa~~~~~~Dc---~t~~~-~~k~DlIiSDmY 130 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----SDADQSIVGDC---RTYMP-PDKFDLIISDMY 130 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----SSSEEEES-G---GGEEE-SS-EEEEEE---
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----cccCCceeccc---cccCC-CCcccEEEEecc
Confidence 34689999999962 322 33334 46677777776521 12223456665 44443 478999999743
Q ss_pred ---hhcc----CCHHH----HHHHHHHcccCCcEEEEEEcCchh
Q 023470 167 ---VQYL----QQPEK----VFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 167 ---l~~~----~~~~~----~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
..++ .+.+. +..-+..-|+=||.+.+.+....+
T Consensus 131 d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 131 DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp -TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 1222 11122 334455668889999987654333
No 413
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=48.93 E-value=86 Score=27.77 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~~l~ 168 (282)
++.+||-.|+|. |.. +++..+...|++++.+++..+.......-.+.+.... ..+ ....+.+|+++.+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g-- 252 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN-- 252 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC--
Confidence 567888889873 222 2333344478999988766554332221111111100 000 011125888886542
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
....+.++.+.|+++|.++.
T Consensus 253 ----~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 253 ----NSATASLAFDILAKGGKLVL 272 (350)
T ss_pred ----CHHHHHHHHHHhhcCCeEEE
Confidence 13468899999999999884
No 414
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=48.51 E-value=96 Score=28.53 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=22.2
Q ss_pred eEEEeCCcc-cchhhhh-cCCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSSW-VSHLPQE-VSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG~-~~~~~~~-~~~~~v~giD~s~~~l~~~ 134 (282)
+|-=||.|. |..++.. ..+.+|+|+|++++.++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l 38 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAML 38 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHH
Confidence 355568872 3333222 1368999999999877644
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=47.98 E-value=52 Score=28.57 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=47.5
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCC-ceEEeecc----cccCCCCCCCceeEEEecchhhccC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLE-YFIVKDLN----QDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~----~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
+|+=+||| .|..++... .+.+|+.++.+++.++..+... ....++.. ...+.. ....+|+|+..--- .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~---~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA---Y 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEeccc---c
Confidence 57889997 344444332 4678999998766554322111 11000000 001111 11568888876431 2
Q ss_pred CHHHHHHHHHHcccCCcEEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~ 192 (282)
+.+.+++.+...+.++..++.
T Consensus 78 ~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 78 QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cHHHHHHHHhhhcCCCCEEEE
Confidence 457788888888877665544
No 416
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=47.78 E-value=1.3e+02 Score=26.59 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-CCCCCceeEEEecchhhcc
Q 023470 95 LRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-EFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~l~~~ 170 (282)
+.++.+||=.|||. |...... ..+.++++++.+++..+.++....-.+.+... ... .-..+.+|+|+.+..
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~d~v~~~~g---- 241 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKD-PEAMKKAAGSLDLIIDTVS---- 241 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcc-hhhhhhccCCceEEEECCC----
Confidence 45667776689863 3322211 14568999999887665543322111111110 011 001355888886543
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+..+.+.|+++|.++..
T Consensus 242 -~-~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 242 -A-SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred -C-cchHHHHHHHhcCCCEEEEE
Confidence 1 12468888999999998754
No 417
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=47.60 E-value=16 Score=32.29 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..++.+|..+.++|||||++++..-|
T Consensus 220 L~~L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 220 LEELEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEec
Confidence 345677999999999999998765443
No 418
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.52 E-value=21 Score=31.19 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=24.2
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~ 134 (282)
+|.=||+| .|..++... .+.+|+.+|.+++.++..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~ 40 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESA 40 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 47778998 344443322 567999999999877653
No 419
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=47.51 E-value=1.1e+02 Score=26.62 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=51.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc----cCC--CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD----QKL--EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~----~~l--~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+ | .|..+... ..+.+++.++.+++..+.++......+.+.... ..+ ......+|+++.
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 216 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLD 216 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEE
Confidence 3456778888885 4 33332221 245676778888776654433221111111100 000 012345899987
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+.. ...+..+.+.|+++|.++.
T Consensus 217 ~~~-------~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 217 CVG-------GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCc-------hHHHHHHHHHhccCCeEEE
Confidence 543 3577888999999999875
No 420
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=46.87 E-value=22 Score=31.50 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..++.+|..+..+|+|||++++..-|
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 35566899999999999998765433
No 421
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.84 E-value=46 Score=27.06 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCCceeEEEecchhhccC------------CHHHHHHHHHHcccCCcEEEEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+.++..|+|+++.+|+-+. +.+.++..+..+|+|+-.+|..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4467789999999987663 45567888888888998888764
No 422
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=46.81 E-value=35 Score=31.70 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=46.7
Q ss_pred CCCeEEEeCCc-ccchhhh---hcCCCeEEEEcCCHHHHH-hCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSS-WVSHLPQ---EVSYKRVVGHGLNAQELA-KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~---~~~~~~v~giD~s~~~l~-~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
++.+|+=+||| .|...+. ..+..+|+.++.+++... .+..... ..... .++.-.-..+|+|++.-.-.+.-
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-~~~~~---~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-EAIPL---DELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-cEeeH---HHHHHHhccCCEEEECCCCCCcE
Confidence 56789999998 3333222 224458999999975432 2222111 11111 11111113579999985432221
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
-....++.+.+.=+.++.+++.+..
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCC
Confidence 1223344432211134567776544
No 423
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=46.51 E-value=1.9e+02 Score=25.34 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=51.1
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc--c--cCC-CCCCCcee-EEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--D--QKL-EFDHCSFD-AVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~--~~l-~~~~~s~D-~v~~ 163 (282)
.+.++.+||=.|||. |.. ++....+.++++++-+++..+.+++...-.+.+... + ..+ ... +.+| ++++
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~-~~~d~vi~~ 237 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKT-GGAHAAVVT 237 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhc-CCCcEEEEe
Confidence 456788888889862 222 223223678999999987766543322111111100 0 001 011 1367 4443
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ...+.++.+.|+++|.++..
T Consensus 238 ~~~-------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 238 AVA-------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CCC-------HHHHHHHHHhccCCCEEEEE
Confidence 321 45689999999999998753
No 424
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.22 E-value=47 Score=29.06 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=48.0
Q ss_pred eEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCC-----------CCceEEe-------ecccccCCCCCCCce
Q 023470 100 EVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPR-----------LEYFIVK-------DLNQDQKLEFDHCSF 158 (282)
Q Consensus 100 ~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~-----------~~~~~~~-------d~~~~~~l~~~~~s~ 158 (282)
+|-=||+|. |.-++.. ..+.+|+..|.+++.++.+.. ....... .+....++.. -...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~~ 85 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FADR 85 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hCCC
Confidence 677789973 4333322 268899999999987755221 1100000 0000011110 1345
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcc-cCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVL-KPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~ 193 (282)
|+|+-+ +.+...-...++.++-+++ +||..+.-.
T Consensus 86 d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 86 QLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred CEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 766654 3333333345788888888 677666543
No 425
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.86 E-value=28 Score=30.42 Aligned_cols=34 Identities=12% Similarity=-0.101 Sum_probs=23.8
Q ss_pred eEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHh
Q 023470 100 EVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAK 133 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~ 133 (282)
+|.=|||| .|..++.. ..+.+|+.+|.+++.++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~ 41 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKN 41 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 57788998 34433332 256799999999987754
No 426
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.83 E-value=10 Score=35.71 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCCCce---------EEeecccc-cCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRLEYF---------IVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~---------~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
++.+|||.=|++|. ..+.+. ...+|++-|.++..++..+.+.++ ...|.+.. ...+-....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 45678888665543 233333 457899999999988744333211 11221110 11122346788774
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.- =...+..+|+.+.+.++.||.|+++..+
T Consensus 189 LD----PyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 LD----PYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cC----CCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 32 1114567999999999999999998543
No 427
>PRK08265 short chain dehydrogenase; Provisional
Probab=45.80 E-value=50 Score=27.97 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHh----CCCCCceEEeecccccCCC--C-----CCCceeEE
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAK----NPRLEYFIVKDLNQDQKLE--F-----DHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~----~~~~~~~~~~d~~~~~~l~--~-----~~~s~D~v 161 (282)
.+.++|=.|+ |.|..++..+ .+.+|+.+|.+.+.++. ......+..+|+...+.+. + .-+..|++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 84 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL 84 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 3567888888 4566555443 57799999988754322 1222345666764421110 0 11457888
Q ss_pred Eecchh
Q 023470 162 VCAVSV 167 (282)
Q Consensus 162 ~~~~~l 167 (282)
+.+-..
T Consensus 85 v~~ag~ 90 (261)
T PRK08265 85 VNLACT 90 (261)
T ss_pred EECCCC
Confidence 887543
No 428
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=45.26 E-value=8.3 Score=27.63 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=11.6
Q ss_pred EEEeCCcccchhhhhc
Q 023470 101 VLDLMSSWVSHLPQEV 116 (282)
Q Consensus 101 vLDiGcG~~~~~~~~~ 116 (282)
-+|||||.|..+...+
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 3799999877665543
No 429
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=45.17 E-value=49 Score=29.65 Aligned_cols=86 Identities=7% Similarity=-0.055 Sum_probs=45.8
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|.=||+| .|..++... -+.+|++.|.++...... .. ...++ .++ -...|+|+...-+..- ..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~---~~-~~~~l---~el---l~~aDiVil~lP~t~~-t~ 213 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF---LT-YKDSV---KEA---IKDADIISLHVPANKE-SY 213 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh---hh-ccCCH---HHH---HhcCCEEEEeCCCcHH-HH
Confidence 35678889998 455544432 567999999987542210 00 01111 111 1345777764321110 11
Q ss_pred HHHHHHHHHcccCCcEEEEE
Q 023470 174 EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~ 193 (282)
..+.++....+|||..++-+
T Consensus 214 ~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 214 HLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred HHHhHHHHhcCCCCcEEEEc
Confidence 22456778888988755543
No 430
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=45.08 E-value=2.1e+02 Score=25.04 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=49.8
Q ss_pred hCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCCC-CCCCceeEEEecch
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKLE-FDHCSFDAVVCAVS 166 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l~-~~~~s~D~v~~~~~ 166 (282)
.+.++.+||=.|+ | .|..+.. ...+.++++++.+. ..+.++...--.+.+.... .... .....+|+|+.+..
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 3557888998998 5 3332222 12567788887654 3333322221011111100 0011 12345899987644
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
...+.++.+.|+++|.++.
T Consensus 253 -------~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 253 -------GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred -------HHHHHHHHHHhccCCEEEE
Confidence 2357888999999999874
No 431
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=45.00 E-value=30 Score=31.72 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHHHHHHh-hCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHH---HHHh------------CC--CCCceE
Q 023470 83 FISTLTNLYRQ-MLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQ---ELAK------------NP--RLEYFI 141 (282)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~---~l~~------------~~--~~~~~~ 141 (282)
....+...+.+ .+.++....|+|.|.|.. .+.......-+|+++... +.+. .+ ...+.+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 33344444443 356788899999987653 233234455677766532 1100 11 111223
Q ss_pred EeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 142 VKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 142 ~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++.........-+...++|+++.+..- +++..-+.++..-+|+|-+++=+
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecc
Confidence 3333211111111244678888776322 23334566899999999887643
No 432
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=44.91 E-value=41 Score=26.89 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=32.1
Q ss_pred CCCCceeEEEecchhhccC---------------CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCAVSVQYLQ---------------QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
...+.||.|+-+|= |+. =...+++.+..+|+++|.+.++....
T Consensus 71 ~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 71 LKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred ccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45688999999863 332 11237999999999999999996543
No 433
>PLN02256 arogenate dehydrogenase
Probab=43.83 E-value=52 Score=29.15 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=46.9
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
...+|.=||+| .|..++... .+.+|+++|.++.. +.+.........+. .++. ....|+|+.+--.. ..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~---~e~~--~~~aDvVilavp~~---~~ 105 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDP---DDFC--EEHPDVVLLCTSIL---ST 105 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCH---HHHh--hCCCCEEEEecCHH---HH
Confidence 45678889998 344443322 34689999998642 22222111111111 1111 12468887754322 23
Q ss_pred HHHHHHH-HHcccCCcEEEEEEcC
Q 023470 174 EKVFAEV-FRVLKPGGVFIVSFSN 196 (282)
Q Consensus 174 ~~~l~~~-~r~LkpgG~li~~~~~ 196 (282)
..++.++ ...++||. +++++..
T Consensus 106 ~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 106 EAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred HHHHHhhhhhccCCCC-EEEecCC
Confidence 5566776 45577765 5555543
No 434
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=43.79 E-value=2.4e+02 Score=25.30 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cC-CCCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QK-LEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~-l~~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|||. |.. +++..+..+|+++|.+++..+.+++... ...+.... .. ..+..+.+|+++.+.
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~i~~~~~~~~d~v~d~~ 251 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSDGDPVEQILGLEPGGVDRAVDCV 251 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccCcccHHHHHHHhhCCCCCEEEECC
Confidence 345677777789973 322 2332333479999998876655443321 11121110 00 011124588888764
Q ss_pred hhhc----c-CCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQY----L-QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~----~-~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.-.- . .+....+.++.++|+++|.++..
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 3111 0 13345688999999999998643
No 435
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.55 E-value=1.1e+02 Score=26.88 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~ 165 (282)
..++.+||-.|+|. |.. +++..+...|++++-+++-...++....-.+.+... ... ....+.+|+|+.+-
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE-EDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc-ccHHHHHHHcCCCCCCEEEECC
Confidence 34677777788863 322 233333337888877765443322221101111100 111 01234689998753
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. -...+.++.+.|+++|.++..
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 240 G------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred C------CHHHHHHHHHHhccCCEEEEE
Confidence 2 134578889999999998754
No 436
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.20 E-value=12 Score=29.69 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=41.7
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
+|-=||+| .|..++... .+.+|++.|.+++..+...... ....+-. .++ -...|+|+++.. .-...+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-~~~~~s~--~e~---~~~~dvvi~~v~--~~~~v~~v 74 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-AEVADSP--AEA---AEQADVVILCVP--DDDAVEAV 74 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-EEEESSH--HHH---HHHBSEEEE-SS--SHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-hhhhhhh--hhH---hhcccceEeecc--cchhhhhh
Confidence 45557887 344444332 6789999999987765433222 2222211 111 123588887532 11112345
Q ss_pred HHH--HHHcccCCcEEE
Q 023470 177 FAE--VFRVLKPGGVFI 191 (282)
Q Consensus 177 l~~--~~r~LkpgG~li 191 (282)
+.. +...|++|..++
T Consensus 75 ~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 75 LFGENILAGLRPGKIII 91 (163)
T ss_dssp HHCTTHGGGS-TTEEEE
T ss_pred hhhhHHhhccccceEEE
Confidence 555 666676665554
No 437
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=43.14 E-value=88 Score=27.18 Aligned_cols=90 Identities=19% Similarity=0.090 Sum_probs=50.4
Q ss_pred CCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc--ccCC-CCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--DQKL-EFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~~~l-~~~~~s~D~v~~~~~l~~ 169 (282)
.+.+||=.|+ | .|..+.. ...+.+|++++.+++..+..++..--.+.+... ...+ ......+|+|+.+..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g--- 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG--- 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc---
Confidence 3568888888 5 3332221 124678999998887665443322111111110 0101 112345888876543
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+....+.|+++|+++..
T Consensus 223 ----~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 223 ----GKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred ----HHHHHHHHHHhhcCCEEEEE
Confidence 24678889999999998754
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=43.10 E-value=1e+02 Score=26.84 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=47.2
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccc--------cCCCCCCCceeEEEecchhh
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--------QKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--------~~l~~~~~s~D~v~~~~~l~ 168 (282)
+|+=+|+| .|..++... .+.+|+.++. ++.++..+... +.+.....+ .+.......+|+|+.+---
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERG-LVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCC-eEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 57788997 344443322 4678999998 55443322211 111110000 1111112567877765321
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+.+.+++++...+.++.. ++.+.|.
T Consensus 79 --~~~~~~~~~l~~~~~~~~~-ii~~~nG 104 (305)
T PRK12921 79 --YQLDAAIPDLKPLVGEDTV-IIPLQNG 104 (305)
T ss_pred --cCHHHHHHHHHhhcCCCCE-EEEeeCC
Confidence 2457788888888877654 4444443
No 439
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=43.10 E-value=1.8e+02 Score=25.53 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=52.4
Q ss_pred hCCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC---CCCCceeEEEecchh
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE---FDHCSFDAVVCAVSV 167 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~---~~~~s~D~v~~~~~l 167 (282)
.+.++.+||=.|||. |..+.. ...+.++++++.+++.++.+++...-.+.+... .++. .....+|+++....
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~d~vi~~~g- 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSK-EDVAEALQELGGAKLILATAP- 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCC-ccHHHHHHhcCCCCEEEECCC-
Confidence 345677898889863 332221 124568999999887665544332111111111 0100 00124788886421
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....+..+.+.|+++|.++..
T Consensus 238 -----~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 238 -----NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred -----chHHHHHHHHHcccCCEEEEE
Confidence 134778899999999998753
No 440
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=43.00 E-value=25 Score=30.89 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=26.4
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.||+|+.+...-|.-.++ +.++++|||.|+++..
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETA 255 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcc
Confidence 6699998886654443433 7788999999999864
No 441
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=43.00 E-value=1.6e+02 Score=25.00 Aligned_cols=90 Identities=23% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC--CCCCCceeEEEecchhh
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL--EFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l--~~~~~s~D~v~~~~~l~ 168 (282)
+.++.+||=.|+ | .|..+.. ...+.+++.++.+. ..+..+........+... ... ......+|+++.+..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~d~v~~~~~-- 217 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTK-GDFERAAAPGGVDAVLDTVG-- 217 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCC-CchhhccCCCCceEEEECCc--
Confidence 456788888887 4 3332221 12567888887665 333322221011111110 111 122345888886533
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ..+..+.+.|+++|.++..
T Consensus 218 ---~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 218 ---G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred ---h--HHHHHHHHHHhcCcEEEEE
Confidence 1 2678888999999998754
No 442
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.98 E-value=18 Score=31.63 Aligned_cols=35 Identities=14% Similarity=-0.002 Sum_probs=23.7
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~ 134 (282)
+|.=||+| .|..++... .+.+|+.+|.+++.++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA 42 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 57778998 344333322 567999999998766543
No 443
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=42.69 E-value=44 Score=31.04 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCC-CCCCCc
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKL-EFDHCS 157 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l-~~~~~s 157 (282)
..+...+........+|+=+|||. |..++... .+..|+.+|.+++.++..+. ....+.+|......+ ...-..
T Consensus 218 ~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 218 RAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred HHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCcc
Confidence 333333333333457899999983 45554443 57799999999987755432 234566666432222 112245
Q ss_pred eeEEEecc
Q 023470 158 FDAVVCAV 165 (282)
Q Consensus 158 ~D~v~~~~ 165 (282)
+|.|++..
T Consensus 298 a~~vi~~~ 305 (453)
T PRK09496 298 ADAFIALT 305 (453)
T ss_pred CCEEEECC
Confidence 77777653
No 444
>PRK07806 short chain dehydrogenase; Provisional
Probab=42.66 E-value=1.3e+02 Score=24.99 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHH-HH-------HhCCCCCceEEeecccccCCC--C-----CCCc
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQ-EL-------AKNPRLEYFIVKDLNQDQKLE--F-----DHCS 157 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~-~l-------~~~~~~~~~~~~d~~~~~~l~--~-----~~~s 157 (282)
.+.++|-.|+ |.|..+.... .+.+|++++.+.. .+ ........+..+|+...+.+. + .-+.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 3467888998 4666555433 5678888876532 11 111112234556664321110 0 0135
Q ss_pred eeEEEecchhhccC-------------CHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQ-------------QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.|+++.+....... -...+++.+.+.++.+|++++.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 78877664321110 1224667777766667776654
No 445
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=42.25 E-value=1.2e+02 Score=26.62 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEE
Q 023470 117 SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVF 190 (282)
Q Consensus 117 ~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 190 (282)
.+.++++++.+++..+.++....-.+.+... .++ . .....+|+|+.+.. ........+.|++||++
T Consensus 167 ~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~v~~~~~~~~~d~vid~~g-------~~~~~~~~~~l~~~G~~ 238 (324)
T cd08291 167 DGIKVINIVRRKEQVDLLKKIGAEYVLNSSD-PDFLEDLKELIAKLNATIFFDAVG-------GGLTGQILLAMPYGSTL 238 (324)
T ss_pred cCCEEEEEeCCHHHHHHHHHcCCcEEEECCC-ccHHHHHHHHhCCCCCcEEEECCC-------cHHHHHHHHhhCCCCEE
Confidence 4668999999987766554433111222211 111 0 12235898886543 12345568889999998
Q ss_pred EEE
Q 023470 191 IVS 193 (282)
Q Consensus 191 i~~ 193 (282)
+..
T Consensus 239 v~~ 241 (324)
T cd08291 239 YVY 241 (324)
T ss_pred EEE
Confidence 764
No 446
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.86 E-value=30 Score=30.58 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..++.+|..+..+|+|||++++..-|
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34566899999999999998765433
No 447
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.61 E-value=2.2e+02 Score=24.25 Aligned_cols=85 Identities=21% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
++..||=.|+ | .|..+.. ...+.++++++.+++..+..++.. ...+... ..+ .++.+|+++.+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~---~~~--~~~~~d~vl~~~g----- 201 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGG---SEL--SGAPVDLVVDSVG----- 201 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecc---ccc--cCCCceEEEECCC-----
Confidence 4778888888 3 3333222 125678999988877665443322 1111111 111 2246899987543
Q ss_pred CHHHHHHHHHHcccCCcEEEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ..+....+.|+++|+++..
T Consensus 202 ~--~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 202 G--PQLARALELLAPGGTVVSV 221 (305)
T ss_pred c--HHHHHHHHHhcCCCEEEEE
Confidence 1 3578899999999998743
No 448
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=41.32 E-value=49 Score=29.05 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=22.9
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~ 134 (282)
+|-=||+| .|..++... .+.+|++.|.+++.++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~ 39 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEAL 39 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 45567887 344443332 567899999998766543
No 449
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=41.30 E-value=54 Score=28.81 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=46.3
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCC-c-eEEee------cccccCCCCCCCceeEEEecchhh
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLE-Y-FIVKD------LNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~-~-~~~~d------~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
+|.=||+| .|..++... .+.+|+.+|.+++.++..+... . ....+ .....+....-...|+|+.+---.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~ 82 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ 82 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence 57778997 455444332 5678999999987654322110 0 00000 000011110013468887764432
Q ss_pred ccCCHHHHHHHHHHcccCCcEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li 191 (282)
..+.++..+...++++..++
T Consensus 83 ---~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 83 ---ALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred ---HHHHHHHHHHhhcCCCCEEE
Confidence 33667778888888765544
No 450
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=40.26 E-value=1.4e+02 Score=26.39 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=51.2
Q ss_pred CCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~~ 165 (282)
+.++.+||=.|+|. |. .+++..+...++++|-+++....+....--.+.+.... ..+ . .+...+|+++...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~ 251 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEAT 251 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 45667776688863 32 23333455568899988776554333221112211100 001 0 1223489888653
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+..+.+.|+++|+++..
T Consensus 252 g-----~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 252 G-----H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred C-----C-hHHHHHHHHHhhcCCEEEEE
Confidence 2 2 24578899999999998753
No 451
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=40.08 E-value=1.4e+02 Score=26.32 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEecch
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCAVS 166 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~~~ 166 (282)
.++.+||-.|+|. |.. ++...+...|++++.+++..+..+....-.+.+.... ..+ . .....+|+|+.+..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 3567777788863 322 2232233368888888765543332211111122110 001 1 12345898887432
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...+..+.+.|+++|.++..
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 242 ------APSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEE
Confidence 145678889999999998765
No 452
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=39.99 E-value=1.6e+02 Score=25.62 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCC-CCceEEeeccc-c--cCC-CCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQ-D--QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~-~--~~l-~~~~~s~D~v~~~~ 165 (282)
+.++.+||=.|+ | .|..+... ..+.++++++.+++..+.++. ...-.+.+... + ..+ ....+.+|+++.+.
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~ 222 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNV 222 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcc
Confidence 446778888884 4 33332221 256789999988765554332 11111111110 0 000 11124589888654
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
. ...+.++.+.|+++|.++.
T Consensus 223 g-------~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 223 G-------GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred h-------HHHHHHHHHhcCCCceEEE
Confidence 3 2378888999999999774
No 453
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=39.92 E-value=54 Score=27.01 Aligned_cols=86 Identities=22% Similarity=0.170 Sum_probs=47.5
Q ss_pred eEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH-
Q 023470 100 EVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE- 174 (282)
Q Consensus 100 ~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~- 174 (282)
+|-=||+ | .|..+..+. ++.+|+++=-++.-+...+. ......|+.+.+.+.-.-.-+|+|++.+..-.-...+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~-~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQG-VTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccccc-ceeecccccChhhhHhhhcCCceEEEeccCCCCChhHH
Confidence 4555666 6 356665543 78999999888876644322 2244555522122111124599999997654322222
Q ss_pred --HHHHHHHHcccC
Q 023470 175 --KVFAEVFRVLKP 186 (282)
Q Consensus 175 --~~l~~~~r~Lkp 186 (282)
...+.+...||-
T Consensus 81 ~~k~~~~li~~l~~ 94 (211)
T COG2910 81 HSKSIEALIEALKG 94 (211)
T ss_pred HHHHHHHHHHHHhh
Confidence 234445555555
No 454
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=39.88 E-value=50 Score=32.09 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=41.8
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhC----------------CCCCceEEeecccccCCCCCCC
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKN----------------PRLEYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~----------------~~~~~~~~~d~~~~~~l~~~~~ 156 (282)
.+..||=.|+ |.|..+...+ .+.+|++++.+.+.+... .....++.+|+...+.+.-.-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 5677899998 3666655443 678999998887644210 0123456777743222211114
Q ss_pred ceeEEEecchh
Q 023470 157 SFDAVVCAVSV 167 (282)
Q Consensus 157 s~D~v~~~~~l 167 (282)
.+|+||++...
T Consensus 159 giDiVVn~AG~ 169 (576)
T PLN03209 159 NASVVICCIGA 169 (576)
T ss_pred CCCEEEEcccc
Confidence 57998888543
No 455
>PLN02688 pyrroline-5-carboxylate reductase
Probab=39.73 E-value=71 Score=27.28 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=45.1
Q ss_pred eEEEeCCc-ccchhhhhc--CCC----eEEEE-cCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYK----RVVGH-GLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~----~v~gi-D~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
+|.=|||| .|..++... .+. +|+++ |.+++..+......-....+. .+. -...|+|+.+-- -.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~---~e~---~~~aDvVil~v~---~~ 72 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASN---TEV---VKSSDVIILAVK---PQ 72 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCCh---HHH---HhcCCEEEEEEC---cH
Confidence 46668998 344333321 222 78888 888876544332211111111 111 124588877652 22
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+...++.++...+++|. +++++..
T Consensus 73 ~~~~vl~~l~~~~~~~~-~iIs~~~ 96 (266)
T PLN02688 73 VVKDVLTELRPLLSKDK-LLVSVAA 96 (266)
T ss_pred HHHHHHHHHHhhcCCCC-EEEEecC
Confidence 34567777766777665 4455433
No 456
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.67 E-value=1.5e+02 Score=25.33 Aligned_cols=92 Identities=23% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~~ 165 (282)
+.++.+||=.|+ | .|..+... ..+.+++.++.+....+..+......+.+.... ..+ . .....+|+++.+.
T Consensus 142 ~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 221 (328)
T cd08268 142 LRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPV 221 (328)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECC
Confidence 456778888887 3 33333222 256789999988765543322111111111100 000 0 1223589998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.++++|.++..
T Consensus 222 ~-------~~~~~~~~~~l~~~g~~v~~ 242 (328)
T cd08268 222 G-------GPQFAKLADALAPGGTLVVY 242 (328)
T ss_pred c-------hHhHHHHHHhhccCCEEEEE
Confidence 4 13467788899999998843
No 457
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.53 E-value=22 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++.+|..+..+|+|||++++..-|
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4566899999999999999876544
No 458
>PRK06182 short chain dehydrogenase; Validated
Probab=39.16 E-value=1.1e+02 Score=25.94 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=43.0
Q ss_pred CCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCCC--C-----CCCceeEEEecc
Q 023470 98 GSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKLE--F-----DHCSFDAVVCAV 165 (282)
Q Consensus 98 ~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l~--~-----~~~s~D~v~~~~ 165 (282)
+.+||=.|+ |.|..++... .+.+|++++.+++.+... .....+..+|+...+.+. + ..+..|+++.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 456888888 4666655543 678999999887755422 223456677775421110 0 124689999886
Q ss_pred hhh
Q 023470 166 SVQ 168 (282)
Q Consensus 166 ~l~ 168 (282)
...
T Consensus 83 g~~ 85 (273)
T PRK06182 83 GYG 85 (273)
T ss_pred CcC
Confidence 553
No 459
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=39.01 E-value=70 Score=25.27 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=42.6
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCCC---CCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKLE---FDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l~---~~~~s~D~v~~~~~l~~ 169 (282)
..+-|||+|=|.|. ++...+++.+|+.+|-.-..-.-+ .....++++++. +.++ .-....-++.+-...++
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~--~tl~~~~~~g~~a~laHaD~G~g~ 105 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIR--ETLPALARFGAGAALAHADIGTGD 105 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HH--HHHHHHHHH-S-EEEEEE----S-
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHH--HHhHHHHhcCCceEEEEeecCCCC
Confidence 35679999999775 556667999999999654322111 122356777764 2222 11233334444333322
Q ss_pred cCCHHH----HHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEK----VFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~----~l~~~~r~LkpgG~li~~ 193 (282)
-..... +-.-+..+|.|||.++=.
T Consensus 106 ~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 106 KEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred cchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 211111 223467889999988744
No 460
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=38.74 E-value=95 Score=28.79 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=53.2
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCC-CCCCceeEEEecchhhccCCH
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~~ 173 (282)
+|+=+||| .|..++... .+..|+.+|.+++.++..+. ...+..+|......+. ..-..+|.|++...= .+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~---~~~ 78 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS---DET 78 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC---hHH
Confidence 57888998 455554433 57799999999987765443 2345556653321111 112457877775421 112
Q ss_pred HHHHHHHHHcccCCcEEEEEEcC
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
...+....|.+.|.-.+++.+.+
T Consensus 79 n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 79 NMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHhcCCCeEEEEECC
Confidence 23445556666566566655443
No 461
>PRK08655 prephenate dehydrogenase; Provisional
Probab=38.68 E-value=64 Score=30.17 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=45.0
Q ss_pred eEEEeC-Cc-ccchhhhhc--CCCeEEEEcCCHHHH-HhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 100 EVLDLM-SS-WVSHLPQEV--SYKRVVGHGLNAQEL-AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 100 ~vLDiG-cG-~~~~~~~~~--~~~~v~giD~s~~~l-~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
+|.=+| +| .|..++... .+.+|+++|.+++.. +.+.........+. ... -...|+|+.+--...+ .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~---~e~---~~~aDvVIlavp~~~~---~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDN---IDA---AKDADIVIISVPINVT---E 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCH---HHH---hccCCEEEEecCHHHH---H
Confidence 566786 67 455444432 456899999987654 22222211011111 111 1346888876544433 4
Q ss_pred HHHHHHHHcccCCcEEE
Q 023470 175 KVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li 191 (282)
.++.++...+++|..++
T Consensus 73 ~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLM 89 (437)
T ss_pred HHHHHHHhhCCCCCEEE
Confidence 57777777788776433
No 462
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=37.97 E-value=52 Score=28.87 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=41.7
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
+|-=||+| .|..++... .+.+|++.|.+++..+...........+. +++.-.....|+|+.+-.-. ...+.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~---~~~~~~~~~advVi~~vp~~--~~~~~v 76 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSL---EELVSKLEAPRTIWVMVPAG--EVTESV 76 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCH---HHHHHhCCCCCEEEEEecCc--hHHHHH
Confidence 34557887 344443322 56789999999876654322211111111 11110001246766542211 122445
Q ss_pred HHHHHHcccCCcEEE
Q 023470 177 FAEVFRVLKPGGVFI 191 (282)
Q Consensus 177 l~~~~r~LkpgG~li 191 (282)
+.++...+++|..++
T Consensus 77 ~~~i~~~l~~g~ivi 91 (299)
T PRK12490 77 IKDLYPLLSPGDIVV 91 (299)
T ss_pred HHHHhccCCCCCEEE
Confidence 666666677765443
No 463
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.53 E-value=75 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=24.2
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHh
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAK 133 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~ 133 (282)
.+|.=||+| +|..++... .+.+|+..|.+++.++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 42 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEA 42 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 457778998 344443322 56799999999887754
No 464
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.34 E-value=1.7e+02 Score=25.04 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--cCC-CCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--QKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--~~l-~~~~~s~D~v~~~~~ 166 (282)
+.++.+||=.|+ | .|..+.+ ...+.+|++++.+++..+..+... ...... ..+ ..+ .+ .+.+|+++.+..
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVID-DGAIAEQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEec-CccHHHHHHHh-CCCceEEEECCC
Confidence 456788888887 4 3333222 125678999988886654433221 111111 100 111 12 356899987543
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.++.+.|+++|+++..
T Consensus 218 -------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 218 -------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred -------hHHHHHHHHHhccCCEEEEE
Confidence 24678889999999998753
No 465
>PLN03139 formate dehydrogenase; Provisional
Probab=36.99 E-value=42 Score=30.91 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=44.8
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.+.+|.=||+| .|..+++.. -+.+|++.|.+....+...........++ .++- ...|+|++..-+. +.-
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l---~ell---~~sDvV~l~lPlt--~~T 269 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDL---DAML---PKCDVVVINTPLT--EKT 269 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCH---HHHH---hhCCEEEEeCCCC--HHH
Confidence 35678888888 455554433 46799999987421111111110011122 1221 3468888843210 011
Q ss_pred HHHH-HHHHHcccCCcEEEEE
Q 023470 174 EKVF-AEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l-~~~~r~LkpgG~li~~ 193 (282)
..++ ++....+|||..|+-.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNN 290 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEEC
Confidence 1122 5677888988765543
No 466
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.62 E-value=2.9e+02 Score=24.16 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=50.8
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc------cCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD------QKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~l~~~~~s~D~v~~ 163 (282)
.+.++..||=.|||. |.. ++...+...+++++.+++..+.++....-.+.+.... ..+. +...+|+++.
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~il~ 243 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAVLE 243 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEEEE
Confidence 344566766689973 322 3333344468999988754443332211111111100 1111 2345888886
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... -...+..+.+.|+++|.++..
T Consensus 244 ~~g------~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 244 CVG------TQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCC------CHHHHHHHHHhhccCCEEEEe
Confidence 532 145788999999999998753
No 467
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=36.33 E-value=41 Score=25.92 Aligned_cols=29 Identities=17% Similarity=0.010 Sum_probs=15.2
Q ss_pred EeCCccc--c---hhh--hhcCCCeEEEEcCCHHHH
Q 023470 103 DLMSSWV--S---HLP--QEVSYKRVVGHGLNAQEL 131 (282)
Q Consensus 103 DiGcG~~--~---~~~--~~~~~~~v~giD~s~~~l 131 (282)
|||+..| . ... ...+..+|+++|+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~ 36 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF 36 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence 8999666 2 221 233678999999999864
No 468
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=36.30 E-value=37 Score=27.00 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=25.8
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+|++++.. +..+.....-|||||.+++...
T Consensus 56 ~~~Dilv~l~--------~~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 56 GEADILVALD--------PEALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp SSESEEEESS--------HHHHHHCGTTCETTEEEEEETT
T ss_pred CCCCEEEEcC--------HHHHHHHhcCcCcCeEEEEECC
Confidence 7899999975 3455577888999999999853
No 469
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=33 Score=32.36 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.0
Q ss_pred CCCeEEEeCCc-ccchhhhhc---CCCeEEEEcCC
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV---SYKRVVGHGLN 127 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~---~~~~v~giD~s 127 (282)
.+++||=+||| .|.-+.... +..+|+-+|..
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlD 45 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLD 45 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEecc
Confidence 67899999995 777655433 67788887765
No 470
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=36.06 E-value=79 Score=28.04 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE------EcCchhHHHHHHhhh
Q 023470 154 DHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS------FSNRMFYEKAISAWR 208 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~------~~~~~~~~~~~~~~~ 208 (282)
+.+++|.++...+-.+++| ...++.++.|-+.+|..+++- .+.......++..|.
T Consensus 324 ~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~s~~~gR~s~~irdqw~ 386 (414)
T COG5379 324 PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEVSRLPGRLSTQIRDQWA 386 (414)
T ss_pred CCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccceecCCCCCcHHHHHHHH
Confidence 4578999999999889975 456999999999999999985 233344455666664
No 471
>PRK10742 putative methyltransferase; Provisional
Probab=35.98 E-value=62 Score=27.82 Aligned_cols=37 Identities=14% Similarity=-0.065 Sum_probs=26.3
Q ss_pred CCCCC--eEEEeCCcccchhhh-hcCCCeEEEEcCCHHHH
Q 023470 95 LRPGS--EVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQEL 131 (282)
Q Consensus 95 ~~~~~--~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l 131 (282)
++++. +|||+=+|+|.-... ...+++|+++|-++.+.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~va 123 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVA 123 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHH
Confidence 34555 899999998863222 22577899999998643
No 472
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.94 E-value=2.4e+02 Score=23.06 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh----cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCC-
Q 023470 79 VDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE----VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEF- 153 (282)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~----~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~- 153 (282)
+.......+..........+.+|--|.|-+....... .+..+|+-.+..+..-... .+|+.-|.+...++|.
T Consensus 55 y~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg---~eFvfYDyN~p~dlp~~ 131 (217)
T KOG3350|consen 55 YSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG---TEFVFYDYNCPLDLPDE 131 (217)
T ss_pred cCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc---ceeEEeccCCCCCCHHH
Confidence 3334444555444455556778888888553322222 2577899988887654443 4566677764444441
Q ss_pred CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 154 DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
-.+.||+|++-=-+-..+-..+.-..+.+++++.-++++.+
T Consensus 132 lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 132 LKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred HHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEec
Confidence 12569999986321111112345556777888888877764
No 473
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=35.90 E-value=1.6e+02 Score=25.71 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-C-CCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-E-FDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~-~~~~s~D~v~~~~~ 166 (282)
+.++.+||=.|+|. |..+ +...+..+|++++-+++..+..++...-.+.+.... ..+ . .+...+|+|+.+..
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g 244 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVG 244 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCC
Confidence 45678888889863 3322 222233789999888766554432221111111100 011 0 12245899886533
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 245 -----~-~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 245 -----S-DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEE
Confidence 1 34678889999999998853
No 474
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.85 E-value=63 Score=28.89 Aligned_cols=35 Identities=14% Similarity=-0.101 Sum_probs=24.2
Q ss_pred CeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHh
Q 023470 99 SEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAK 133 (282)
Q Consensus 99 ~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~ 133 (282)
.+|-=||+|+ |.-++.. ..+.+|+..|++++.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~ 45 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAA 45 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 4677889983 4433332 268999999999876643
No 475
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.78 E-value=1.3e+02 Score=25.55 Aligned_cols=69 Identities=12% Similarity=-0.079 Sum_probs=40.6
Q ss_pred CCCeEEEeCC---cccchhhhhc--CCCeEEEEcCCHH-HHHhC--CCCCceEEeecccc--------cCCCCCCCceeE
Q 023470 97 PGSEVLDLMS---SWVSHLPQEV--SYKRVVGHGLNAQ-ELAKN--PRLEYFIVKDLNQD--------QKLEFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGc---G~~~~~~~~~--~~~~v~giD~s~~-~l~~~--~~~~~~~~~d~~~~--------~~l~~~~~s~D~ 160 (282)
....||=.|| |.|..++.++ .++.|+++--+-+ |-..+ .+. .....|+..+ +-..+++++.|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl-~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGL-KPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCC-eeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence 3467999999 5777776665 7889999876643 32222 121 1223333322 112346788888
Q ss_pred EEecch
Q 023470 161 VVCAVS 166 (282)
Q Consensus 161 v~~~~~ 166 (282)
.+.+..
T Consensus 85 L~NNAG 90 (289)
T KOG1209|consen 85 LYNNAG 90 (289)
T ss_pred EEcCCC
Confidence 887743
No 476
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=35.74 E-value=58 Score=26.65 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+..|++++..- .. +.+...-|||||.+++..
T Consensus 66 ~~~~D~lva~d~-------~~-~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 66 EGKADLLLAFEP-------LE-ALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCCEEEEeCH-------HH-HHHHHHhcCCCcEEEEEC
Confidence 347899999864 22 345666789999999874
No 477
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=35.71 E-value=60 Score=26.48 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+..|++++..- .. +......|||||.+++..
T Consensus 65 ~~~~D~lva~d~-------~~-~~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALEP-------AE-VARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcCH-------HH-HHHHHhhcCCCcEEEEEC
Confidence 467899999764 22 344556799999999874
No 478
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=35.52 E-value=3e+02 Score=24.02 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=52.4
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccccc---C-----CCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ---K-----LEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~---~-----l~~~~~s~D~v 161 (282)
.+.++.+||=.|+|. |.. +++..+...+++++-+++..+.++....-.+.+..... . .....+.+|++
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~v 237 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVI 237 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEE
Confidence 455778888778863 222 23333444588888888766554333211112211100 0 00123458988
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+.. . ...+.++.+.|+++|.++..
T Consensus 238 id~~g-----~-~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 238 FECVG-----A-PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred EECCC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 86432 1 24678889999999998754
No 479
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=35.50 E-value=36 Score=30.08 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=27.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAK 133 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~ 133 (282)
+..+.+|.-||+|....++-.. ...+|.++|+++..++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAl 100 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIAL 100 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHH
Confidence 4467889999998543333221 45799999999987754
No 480
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=35.22 E-value=35 Score=26.25 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=50.2
Q ss_pred EEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCC-CCCCCceeEEEecchhh
Q 023470 101 VLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKL-EFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 101 vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~l~ 168 (282)
|+=+|+| .|..++..+ .+.+|+.++-++ .++.-+. .....+... ..... ......+|+|+.+-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~viv~vKa- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPP-IVISAPSADAGPYDLVIVAVKA- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEE-EEESSHGHHHSTESEEEE-SSG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccc-cccCcchhccCCCcEEEEEecc-
Confidence 4568897 444444333 678999999988 3332111 011111110 00011 1235679999887321
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+.+.+++.+.+.+.|+..+++. .|.
T Consensus 78 --~~~~~~l~~l~~~~~~~t~iv~~-qNG 103 (151)
T PF02558_consen 78 --YQLEQALQSLKPYLDPNTTIVSL-QNG 103 (151)
T ss_dssp --GGHHHHHHHHCTGEETTEEEEEE-SSS
T ss_pred --cchHHHHHHHhhccCCCcEEEEE-eCC
Confidence 14577999999999999665544 443
No 481
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=34.99 E-value=1.4e+02 Score=26.81 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhC-CCCC-ceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKN-PRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~-~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+||=.|+|. |.. +++. .+.++++++.+++....+ +... ...+..... ..+.-....+|+|+-.-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~-~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~-~~~~~~~~~~D~vid~~g--- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSSDKKREEALEHLGADDYLVSSDA-AEMQEAADSLDYIIDTVP--- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHhcCCcEEecCCCh-HHHHHhcCCCcEEEECCC---
Confidence 4677888889863 332 2222 456788888877544222 1111 111111100 111000124787775432
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....+..+.+.|++||+++..
T Consensus 254 ---~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 254 ---VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ---chHHHHHHHHHhccCCEEEEE
Confidence 134677888999999998753
No 482
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=34.75 E-value=43 Score=29.69 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCCCce-EEeec----ccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRLEYF-IVKDL----NQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~~~~-~~~d~----~~~~~l~~~~~s~D~v~~~~~ 166 (282)
...+..|+|+=+|.|.+... ..+...|+++|.++..++.-+..... .+.+. ..+...+-++.+.|-|....
T Consensus 192 sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL- 270 (351)
T KOG1227|consen 192 SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL- 270 (351)
T ss_pred ccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc-
Confidence 33556788998887765442 23678999999999877543322100 11111 00123333456667665543
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+|.-++-.-.+..+|||.|-=++
T Consensus 271 ---lPSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 271 ---LPSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred ---ccccccchHHHHHHhhhcCCcEE
Confidence 34445555667788888665333
No 483
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=34.74 E-value=89 Score=27.90 Aligned_cols=95 Identities=16% Similarity=0.275 Sum_probs=51.2
Q ss_pred CCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCC---CCCceEEeecccccCCCCCCCceeEEEecchhhcc--
Q 023470 98 GSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNP---RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL-- 170 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~---~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~-- 170 (282)
..+++|+-||.|. .-....+..-+.++|+++..++.-+ ........|+.....-.+....+|+++...=-+.+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 4579999776543 2233335567788999998876432 22344455553211111212278999988422222
Q ss_pred -------CCHHH----HHHHHHHcccCCcEEEEE
Q 023470 171 -------QQPEK----VFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 -------~~~~~----~l~~~~r~LkpgG~li~~ 193 (282)
.|+.. -+.++...++| -.++++
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 23222 45556666788 444444
No 484
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.42 E-value=50 Score=26.85 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=42.7
Q ss_pred eEEEeCCcc-cchhhhhc--CCCeEEEEcCCHHHHHhC-CCCCceEEee--------c-----ccccCCCCCCCceeEEE
Q 023470 100 EVLDLMSSW-VSHLPQEV--SYKRVVGHGLNAQELAKN-PRLEYFIVKD--------L-----NQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 100 ~vLDiGcG~-~~~~~~~~--~~~~v~giD~s~~~l~~~-~~~~~~~~~d--------~-----~~~~~l~~~~~s~D~v~ 162 (282)
+|-=+|.|. |..++..+ .+.+|+|+|++++-++.- ++...+.... . ....+....-...|+++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~ 81 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVF 81 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEE
Confidence 556678873 33333222 678999999999866432 1111110000 0 00000000012356666
Q ss_pred ecchhh----cc---CCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQ----YL---QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~----~~---~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+---- .. .-...+++.+.+.|++|-.+++.
T Consensus 82 I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 82 ICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp E----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred EecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 652111 11 12367899999999997777764
No 485
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=34.17 E-value=2.6e+02 Score=25.19 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=49.3
Q ss_pred hCCCCCeEEEeCCcc-cchh---hhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-----ccCC-CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSHL---PQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-----DQKL-EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-----~~~l-~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+|. |... +...+..+|+.+|.+++.++.++....-.+.+... ...+ .+..+.+|+|+-
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld 266 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFE 266 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEE
Confidence 355677888889963 3222 22223338999999987776654332111111100 0000 111235888877
Q ss_pred cchhhccCCHHHHHHH-HHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAE-VFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~-~~r~LkpgG~li~~ 193 (282)
+.. . ...+.. +...+++||+++..
T Consensus 267 ~~g-----~-~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 267 VIG-----R-LDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred CCC-----C-cHHHHHHHHhhccCCCEEEEE
Confidence 543 2 334555 44455788988754
No 486
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.10 E-value=92 Score=26.14 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=40.4
Q ss_pred eEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhC-----CCCCceEEeecccccCCC-----C---CCCceeEEE
Q 023470 100 EVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKN-----PRLEYFIVKDLNQDQKLE-----F---DHCSFDAVV 162 (282)
Q Consensus 100 ~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~-----~~~~~~~~~d~~~~~~l~-----~---~~~s~D~v~ 162 (282)
++|=.|+ |.|..+.... .+.+|+.++.+++.++.. .....+..+|+.....+. . ..+.+|+|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 5788888 4555554432 578999999887755321 123456677775421110 0 035689999
Q ss_pred ecchh
Q 023470 163 CAVSV 167 (282)
Q Consensus 163 ~~~~l 167 (282)
.+-..
T Consensus 83 ~~ag~ 87 (260)
T PRK08267 83 NNAGI 87 (260)
T ss_pred ECCCC
Confidence 88654
No 487
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=34.05 E-value=2e+02 Score=25.20 Aligned_cols=93 Identities=23% Similarity=0.246 Sum_probs=51.9
Q ss_pred hCCCCCeEEEeCCc--ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c--cCCC--CCCCceeEEEe-
Q 023470 94 MLRPGSEVLDLMSS--WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D--QKLE--FDHCSFDAVVC- 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG--~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~--~~l~--~~~~s~D~v~~- 163 (282)
.+.++.+||=.|+| .|..+... ..+.+++++..+++..+..+....-.+.+... + ..+. .+...+|+++.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~ 241 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVT 241 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEc
Confidence 35567888888874 33332221 25678999988876554332221101111110 0 0010 12345899885
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ...+.++.+.|+++|+++..
T Consensus 242 ~~~-------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 242 AVS-------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCc-------hHHHHHHHHHhhcCCEEEEe
Confidence 322 34678889999999999854
No 488
>PLN02712 arogenate dehydrogenase
Probab=33.42 E-value=85 Score=31.19 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
+..+|.=||+| .|..++... .+.+|+++|.+... +.+.........+. .++. ....|+|+.+--.. ..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~---~e~~--~~~aDvViLavP~~---~~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDP---HDLC--ERHPDVILLCTSII---ST 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCH---HHHh--hcCCCEEEEcCCHH---HH
Confidence 34578889998 355444432 35689999998543 22222221111111 1111 12368888864432 23
Q ss_pred HHHHHHHH-HcccCCcEEEEEE
Q 023470 174 EKVFAEVF-RVLKPGGVFIVSF 194 (282)
Q Consensus 174 ~~~l~~~~-r~LkpgG~li~~~ 194 (282)
..++.++. ..++||. +++.+
T Consensus 122 ~~vl~~l~~~~l~~g~-iVvDv 142 (667)
T PLN02712 122 ENVLKSLPLQRLKRNT-LFVDV 142 (667)
T ss_pred HHHHHhhhhhcCCCCe-EEEEC
Confidence 45666664 4567765 55554
No 489
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=33.38 E-value=1.3e+02 Score=24.92 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC-------CCCCceeEEEecc
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE-------FDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~-------~~~~s~D~v~~~~ 165 (282)
++.++|=.|+ |.|..++... .+.+|++++.+. +........+...|+...+.+. -..+++|+++.+.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 84 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAA 84 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3567888887 4566555433 678999998876 2222223345566664321110 0114579998885
Q ss_pred hh
Q 023470 166 SV 167 (282)
Q Consensus 166 ~l 167 (282)
..
T Consensus 85 g~ 86 (252)
T PRK08220 85 GI 86 (252)
T ss_pred Cc
Confidence 54
No 490
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.06 E-value=1.8e+02 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=22.8
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHh
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAK 133 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~ 133 (282)
+|-=||+| .|..++... .+.+|+++|.+++.++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~ 38 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDK 38 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 45567888 344444332 56799999999876653
No 491
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=32.65 E-value=72 Score=29.63 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=46.4
Q ss_pred CCCeEEEeCCc-ccchhhhh---cCCCeEEEEcCCHHHHH-hCCCCCceEEeecccccCCCCCCCceeEEEecch-hhcc
Q 023470 97 PGSEVLDLMSS-WVSHLPQE---VSYKRVVGHGLNAQELA-KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS-VQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~---~~~~~v~giD~s~~~l~-~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~-l~~~ 170 (282)
++.+|+=+||| .|...+.. .+..+|+.++.+.+... .+...... .... .++.-.-..+|+|+++-. -+++
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~---~~l~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF---EDLEEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH---HHHHHHHhhCCEEEECCCCCCce
Confidence 56789999998 34333322 24478999999976432 22222111 1111 111111135899999843 2222
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
-+ .+.++.+.+- ++++.+++....|
T Consensus 255 i~-~e~l~~~~~~-~~~~~~viDla~P 279 (417)
T TIGR01035 255 VS-KEDVERALRE-RTRPLFIIDIAVP 279 (417)
T ss_pred Ec-HHHHHHHHhc-CCCCeEEEEeCCC
Confidence 22 2233332211 2345677765543
No 492
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=32.45 E-value=1.1e+02 Score=26.99 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=51.4
Q ss_pred CCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc--c--cCC-CCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--D--QKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~--~~l-~~~~~s~D~v~~~~~ 166 (282)
+.++.+||=.|||. |..+.. ...+.+|++++.+++..+..++..--.+.+... + ..+ .+..+.+|+++.+..
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g 242 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALG 242 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCC
Confidence 45677888889863 322211 125678999998887655433221111111110 0 000 111126898887532
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
. ...+..+.+.|+++|.++.
T Consensus 243 -----~-~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 243 -----I-PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3467788999999999875
No 493
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.21 E-value=63 Score=28.39 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=23.8
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhC
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~ 134 (282)
.+|.=||+| .|..++... .+.+|+++|.+++.++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~ 43 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERA 43 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 357778998 344333322 567999999998776543
No 494
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=31.06 E-value=3e+02 Score=25.00 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-------cC-------------
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-------QK------------- 150 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-------~~------------- 150 (282)
+.++.+||=.|+ | .|..... ...+.++++++.+++..+.++......+.+.... ..
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFK 266 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcch
Confidence 456788999998 5 3332221 2256788888888765544433221111111100 00
Q ss_pred -----C--CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 151 -----L--EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 151 -----l--~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ ......+|+|+.+.. ...+....+.|+++|.++..
T Consensus 267 ~~~~~~~~~~~~~g~d~vld~~g-------~~~~~~~~~~l~~~G~~v~~ 309 (398)
T TIGR01751 267 RFGKRIRELTGGEDPDIVFEHPG-------RATFPTSVFVCRRGGMVVIC 309 (398)
T ss_pred hHHHHHHHHcCCCCceEEEECCc-------HHHHHHHHHhhccCCEEEEE
Confidence 0 001234888877542 24577889999999998764
No 495
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=30.99 E-value=2.4e+02 Score=24.67 Aligned_cols=93 Identities=22% Similarity=0.229 Sum_probs=51.0
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCe-EEEEcCCHHHHHhCCCCCceEEeecccc------cCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKR-VVGHGLNAQELAKNPRLEYFIVKDLNQD------QKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~-v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~l~~~~~s~D~v~~ 163 (282)
.+.++.+||=.|+| .|..+.+. ..+.+ +++++.+++..+.......-.+.+.... ..+ .....+|+|+.
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld 240 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIV 240 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEE
Confidence 35577788877986 33332221 24556 8888888765543322111011111000 011 12344899886
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.. -...+..+.+.|+++|+++..
T Consensus 241 ~~~------~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 241 ATG------SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CCC------ChHHHHHHHHHhhcCCEEEEE
Confidence 532 134678888999999998753
No 496
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=30.89 E-value=1.1e+02 Score=26.54 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=24.2
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHh
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAK 133 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~ 133 (282)
.+|-=||+| .|..++... .+.+|++.|.+++.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 357778998 344444332 56899999999977653
No 497
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=30.79 E-value=2.3e+02 Score=24.35 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=49.3
Q ss_pred CCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeeccccc-C-C-CCCCCceeEEEecchhhcc
Q 023470 98 GSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ-K-L-EFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 98 ~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~-~-l-~~~~~s~D~v~~~~~l~~~ 170 (282)
+.+||=.|+ | .|..+.. ...+.+|+.++.+++..+.++....-.+.+..... . . ....+.+|+|+....
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~---- 222 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVG---- 222 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCc----
Confidence 457888887 5 2322221 22566799999998766544332211111111000 0 0 011234888876543
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+..+.+.|+++|.++..
T Consensus 223 ---~~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 223 ---GDVLANLLKQTKYGGVVASC 242 (325)
T ss_pred ---hHHHHHHHHhhcCCCEEEEE
Confidence 23678899999999998743
No 498
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=30.38 E-value=87 Score=28.24 Aligned_cols=36 Identities=14% Similarity=-0.034 Sum_probs=26.6
Q ss_pred CCCeEEEeCCc-----ccchhhhhcCCCeEEEEcCCHHHHH
Q 023470 97 PGSEVLDLMSS-----WVSHLPQEVSYKRVVGHGLNAQELA 132 (282)
Q Consensus 97 ~~~~vLDiGcG-----~~~~~~~~~~~~~v~giD~s~~~l~ 132 (282)
.+.-|.-+|.| .|+++....+..+|+++|+....+.
T Consensus 213 vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~ 253 (362)
T KOG1252|consen 213 VDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVL 253 (362)
T ss_pred CCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceec
Confidence 34456666663 4677887779999999999987664
No 499
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.19 E-value=97 Score=23.66 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=32.9
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++-+|+|+..+--.-- ++...|-.+.+.|..+|.+.+.+|..
T Consensus 43 ddvvD~vllWwR~~Dg-DL~D~LvDa~~~L~d~G~IWvltPK~ 84 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDG-DLVDALVDARTNLADDGVIWVLTPKA 84 (127)
T ss_pred cccccEEEEEEECCcc-hHHHHHHHHHhhhcCCCEEEEEccCC
Confidence 4668898886552222 77788999999999999999998864
No 500
>PRK06500 short chain dehydrogenase; Provisional
Probab=29.40 E-value=2e+02 Score=23.70 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=39.4
Q ss_pred CCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhC----CCCCceEEeecccccCC-------CCCCCceeEE
Q 023470 97 PGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKN----PRLEYFIVKDLNQDQKL-------EFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~----~~~~~~~~~d~~~~~~l-------~~~~~s~D~v 161 (282)
++.+||=.|+ |.|..+.... .+.+|++++.+.+.+... .....+...|+...... .-..+.+|++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 84 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 3457888888 4666555443 577999999886544321 12223455565321111 0012458988
Q ss_pred Eecchh
Q 023470 162 VCAVSV 167 (282)
Q Consensus 162 ~~~~~l 167 (282)
+.+-..
T Consensus 85 i~~ag~ 90 (249)
T PRK06500 85 FINAGV 90 (249)
T ss_pred EECCCC
Confidence 877543
Done!