Your job contains 1 sequence.
>023471
MQKSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNM
TRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA
EQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIG
PKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC
LLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023471
(281 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100382 - symbol:AT3G47830 species:3702 "Arabi... 909 3.5e-91 1
ASPGD|ASPL0000003678 - symbol:AN10840 species:162425 "Eme... 243 2.3e-30 2
TAIR|locus:2044923 - symbol:DML1 "demeter-like 1" species... 175 1.4e-12 2
TAIR|locus:2100138 - symbol:DML2 "demeter-like 2" species... 160 1.6e-11 3
TAIR|locus:2184432 - symbol:DME "DEMETER" species:3702 "A... 153 4.5e-09 3
TIGR_CMR|CHY_1121 - symbol:CHY_1121 "endonuclease III" sp... 138 1.1e-07 1
TAIR|locus:2124301 - symbol:DML3 "demeter-like protein 3"... 125 1.6e-07 3
DICTYBASE|DDB_G0277247 - symbol:apnB "putative endonuclea... 132 3.9e-06 1
TIGR_CMR|CBU_1697 - symbol:CBU_1697 "endonuclease III" sp... 123 1.2e-05 1
UNIPROTKB|P0AB83 - symbol:nth "endonuclease III; specific... 121 1.8e-05 1
TIGR_CMR|SPO_3581 - symbol:SPO_3581 "endonuclease III" sp... 120 2.6e-05 1
TAIR|locus:2198738 - symbol:NTH2 "endonuclease III 2" spe... 122 6.6e-05 1
UNIPROTKB|Q9KT92 - symbol:VC_1011 "Endonuclease III" spec... 113 0.00018 1
TIGR_CMR|VC_1011 - symbol:VC_1011 "endonuclease III" spec... 113 0.00018 1
TAIR|locus:2061345 - symbol:ATNTH1 species:3702 "Arabidop... 118 0.00018 1
TIGR_CMR|GSU_1450 - symbol:GSU_1450 "endonuclease III, pu... 113 0.00019 1
TIGR_CMR|BA_1570 - symbol:BA_1570 "endonuclease III" spec... 107 0.00094 1
>TAIR|locus:2100382 [details] [associations]
symbol:AT3G47830 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] InterPro:IPR003265
InterPro:IPR011257 Pfam:PF00730 SMART:SM00478 EMBL:CP002686
GO:GO:0003824 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 KO:K10773 IPI:IPI00545586
RefSeq:NP_566893.1 UniGene:At.53825 ProteinModelPortal:F4JCQ3
SMR:F4JCQ3 PRIDE:F4JCQ3 EnsemblPlants:AT3G47830.1 GeneID:823937
KEGG:ath:AT3G47830 OMA:FGREYCS Uniprot:F4JCQ3
Length = 293
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 169/259 (65%), Positives = 204/259 (78%)
Query: 18 DPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNE--YD 75
+PYPT RPTAEECR +RD LL+LHGFPPEF YR QRL+ D + ++ +
Sbjct: 30 NPYPTLLRPTAEECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLN 89
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E EEESVLDGLVK +LSQNTTE+NS +AFASLK+TFP W+ VL AE K IENAIRCGGLA
Sbjct: 90 ETEEESVLDGLVKILLSQNTTESNSQRAFASLKATFPKWDDVLNAESKSIENAIRCGGLA 149
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
P KA CIKNIL L +G+LCLEYLRGLS++E+K ELS F+G+GPKTV+CVLMF+LQ +
Sbjct: 150 PKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGVGPKTVSCVLMFNLQHN 209
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
DFPVDTHVFEI+KA+GWVP ADRNKTY+HLN++IP ELKFDLNCLLYTHGK+C NC K
Sbjct: 210 DFPVDTHVFEIAKALGWVPKTADRNKTYVHLNRKIPDELKFDLNCLLYTHGKICSNCKKN 269
Query: 256 GGNRQRKESAGNLCPLLNY 274
+ K ++ + CPL+ +
Sbjct: 270 VAKPKAKVASPDDCPLVGF 288
>ASPGD|ASPL0000003678 [details] [associations]
symbol:AN10840 species:162425 "Emericella nidulans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR011257
Pfam:PF00730 SMART:SM00278 SMART:SM00478 GO:GO:0003824
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:BN001301
EnsemblFungi:CADANIAT00007418 HOGENOM:HOG000201727 OMA:CGEVPSV
Uniprot:C8V1C2
Length = 502
Score = 243 (90.6 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 49/98 (50%), Positives = 60/98 (61%)
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPT 215
L L YL GL +E+ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K + WVP
Sbjct: 362 LSLNYLHGLPTEEVMTELMKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWLNWVPP 421
Query: 216 -AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
A + HL RIP LK+ L+ LL HGK C C
Sbjct: 422 DRATEITAFSHLEVRIPDHLKYPLHQLLIRHGKSCPRC 459
Score = 121 (47.7 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 47/140 (33%), Positives = 63/140 (45%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPL-DMNEYDEG 77
P+P +RPT EEC + L ++HG E V ++P + G
Sbjct: 188 PFPDWARPTPEECEEVNRLLSSIHG---EIVA-------------PTTIPEPSLTVTGCG 231
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 232 EVPSVLDALIRTLLSGATTGNNSALAFNGLVQKFGILHDGIGKGSVNWDAVRRAPVKDVF 291
Query: 127 NAIRCGGLAPTKAACIKNIL 146
AI+ GGLA +K+ IK IL
Sbjct: 292 EAIKSGGLADSKSKNIKAIL 311
Score = 39 (18.8 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 104 FASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
F+++ FPT ++ Q E A+ G+
Sbjct: 12 FSAVSFHFPTIHGIMTRSQAARETALIAAGI 42
>TAIR|locus:2044923 [details] [associations]
symbol:DML1 "demeter-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006281 "DNA
repair" evidence=IEA;IMP] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS;IDA] [GO:0006342 "chromatin silencing"
evidence=IMP] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS;IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IDA] [GO:0031936
"negative regulation of chromatin silencing" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=IMP] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00478 SMART:SM00525 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 EMBL:AC006919 GO:GO:0080111 GO:GO:0031936
GO:GO:0006342 GO:GO:0006306 GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 GO:GO:0019104 EMBL:AY286009 IPI:IPI00517101
PIR:D84781 RefSeq:NP_181190.3 UniGene:At.14091
ProteinModelPortal:Q9SJQ6 SMR:Q9SJQ6 STRING:Q9SJQ6 PaxDb:Q9SJQ6
PRIDE:Q9SJQ6 EnsemblPlants:AT2G36490.1 GeneID:818224
KEGG:ath:AT2G36490 TAIR:At2g36490 HOGENOM:HOG000154178
InParanoid:Q9SJQ6 OMA:ANTASLI PhylomeDB:Q9SJQ6
ProtClustDB:CLSN2915131 Genevestigator:Q9SJQ6 GermOnline:AT2G36490
Uniprot:Q9SJQ6
Length = 1393
Score = 175 (66.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 44/126 (34%), Positives = 64/126 (50%)
Query: 108 KSTFPT--WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLS 165
+ST T W+ + AA+ K + I+ G+ A I+ L L+ G + LE+LR +
Sbjct: 877 RSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVP 936
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH 225
D+ K L F G+G K+V CV + L FPVDT+V I+ +GWVP LH
Sbjct: 937 PDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 996
Query: 226 LNQRIP 231
L + P
Sbjct: 997 LLEMYP 1002
Score = 65 (27.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
SV+D +V L+QN ++ S AF SL S FP
Sbjct: 595 SVVDSVVGVFLTQNVSDHLSSSAFMSLASQFP 626
>TAIR|locus:2100138 [details] [associations]
symbol:DML2 "demeter-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0006306 "DNA
methylation" evidence=RCA] InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764 SMART:SM00525
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 eggNOG:COG0177 EMBL:AC010927
IPI:IPI00533587 RefSeq:NP_187612.5 UniGene:At.40005
ProteinModelPortal:Q9SR66 STRING:Q9SR66 PaxDb:Q9SR66 PRIDE:Q9SR66
GeneID:820162 KEGG:ath:AT3G10010 TAIR:At3g10010 InParanoid:Q9SR66
OMA:STHCELN Genevestigator:Q9SR66 GermOnline:AT3G10010
Uniprot:Q9SR66
Length = 1332
Score = 160 (61.4 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ + + I N I G+ A IK L L++ G + LE+LR + D+ K L
Sbjct: 817 WDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYL 876
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V CV + L Q FPVDT+V I+ +GWVP ++ +HL + P
Sbjct: 877 LSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYP 934
Score = 60 (26.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-W 114
SV+D +V L+QN + +S A+ L + FP W
Sbjct: 564 SVVDSVVGVFLTQNVADHSSSSAYMDLAAEFPVEW 598
Score = 51 (23.0 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 32 RGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLD 70
+G + E LHG P E + N + H D+ + L+
Sbjct: 15 KGRQPETEVLHGLPQEQSIFNNMQHNHQPDSDRRRLSLE 53
>TAIR|locus:2184432 [details] [associations]
symbol:DME "DEMETER" species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0019104 "DNA
N-glycosylase activity" evidence=ISS;IDA] [GO:0043078 "polar
nucleus" evidence=IDA] [GO:0006349 "regulation of gene expression
by genetic imprinting" evidence=IMP] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA;IDA] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00525 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0009793 GO:GO:0043078 GO:GO:0006306
GO:GO:0004519 GO:GO:0003906 GO:GO:0006349 EMBL:AF521596
EMBL:DQ335243 EMBL:AL162875 EMBL:AK117994 EMBL:BT005357
IPI:IPI00516439 IPI:IPI00534354 IPI:IPI00760328 PIR:T48452
PIR:T48453 PIR:T48454 RefSeq:NP_001078527.1 RefSeq:NP_196076.2
UniGene:At.33104 ProteinModelPortal:Q8LK56 SMR:Q8LK56 STRING:Q8LK56
PaxDb:Q8LK56 PRIDE:Q8LK56 EnsemblPlants:AT5G04560.2 GeneID:830335
KEGG:ath:AT5G04560 TAIR:At5g04560 eggNOG:COG0177
HOGENOM:HOG000112227 InParanoid:Q8LK56 OMA:CTEITES PhylomeDB:Q8LK56
ProtClustDB:CLSN2690787 Genevestigator:Q8LK56 GO:GO:0019104
Uniprot:Q8LK56
Length = 1987
Score = 153 (58.9 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 1476 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1535
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1536 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1593
Score = 61 (26.5 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
SV+D ++ L+QN ++ S AF SL + FP
Sbjct: 1023 SVVDSVIGVFLTQNVSDHLSSSAFMSLAARFP 1054
Score = 40 (19.1 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 41 LHGFPPEFVK 50
LHG PPE ++
Sbjct: 790 LHGMPPEVIE 799
>TIGR_CMR|CHY_1121 [details] [associations]
symbol:CHY_1121 "endonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_359967.1
ProteinModelPortal:Q3AD17 STRING:Q3AD17 GeneID:3726382
KEGG:chy:CHY_1121 PATRIC:21275382
BioCyc:CHYD246194:GJCN-1120-MONOMER Uniprot:Q3AD17
Length = 210
Score = 138 (53.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 54/198 (27%), Positives = 87/198 (43%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
+++ LV VLS +T+ K L +L ++ + IR GL KA
Sbjct: 27 QNIFQLLVAVVLSAQSTDRQVNKVTEKLFLFVKEPRDLLDMGEEELSRQIRSLGLYRNKA 86
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+N++K + E + EY G D AEL + G+GPKT ++ + FPV
Sbjct: 87 ---RNLIK-IAEILDR---EY-HGQVPDSF-AELLKLPGVGPKTAEVIVGVGFNKPSFPV 137
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
DTHVF +++ +G ++ L + P DL+ L G+ R C +
Sbjct: 138 DTHVFRVARRLGLSKARTPEGVSF-DLKKIFPPNSWIDLHHRLIFFGR--RIC------K 188
Query: 260 QRKESAGNLCPLLNYCEK 277
+K S N+CP +C+K
Sbjct: 189 AQKPSC-NICPFPEFCQK 205
>TAIR|locus:2124301 [details] [associations]
symbol:DML3 "demeter-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0010216 "maintenance of DNA methylation" evidence=IMP]
[GO:0019104 "DNA N-glycosylase activity" evidence=IDA]
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR011257
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 EMBL:AL021961 EMBL:AL161584
GO:GO:0010216 eggNOG:COG0177 GO:GO:0019104 EMBL:AY735663
IPI:IPI00525973 PIR:T05430 RefSeq:NP_195132.3 UniGene:At.51042
ProteinModelPortal:O49498 SMR:O49498 STRING:O49498 PRIDE:O49498
EnsemblPlants:AT4G34060.1 GeneID:829552 KEGG:ath:AT4G34060
TAIR:At4g34060 HOGENOM:HOG000064650 OMA:WARIASS PhylomeDB:O49498
ProtClustDB:CLSN2681626 Genevestigator:O49498 Uniprot:O49498
Length = 1044
Score = 125 (49.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 34/112 (30%), Positives = 49/112 (43%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V + Q +E I+ G + I L + G + LE+LR +K L
Sbjct: 525 WSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYL 584
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH 225
GIG K+ CV + L+ FPVDT+V I+ +G VP N +H
Sbjct: 585 LEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMH 636
Score = 68 (29.0 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
SV+D +V L+QNTT+ S AF S+ + FP
Sbjct: 414 SVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFP 445
Score = 42 (19.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 229 RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++P+E ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 657 KLPQETLYELHYQMITFGKVF--CTKTIPNC-------NACPMKSECK 695
>DICTYBASE|DDB_G0277247 [details] [associations]
symbol:apnB "putative endonuclease III" species:44689
"Dictyostelium discoideum" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004035 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 dictyBase:DDB_G0277247
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677
GenomeReviews:CM000151_GR GO:GO:0051539 GO:GO:0004519
EMBL:AAFI02000019 eggNOG:COG0177 KO:K10773 OMA:CSECLNK
RefSeq:XP_642760.1 ProteinModelPortal:Q86K43 STRING:Q86K43
EnsemblProtists:DDB0232975 GeneID:8620949 KEGG:ddi:DDB_G0277247
InParanoid:Q86K43 ProtClustDB:CLSZ2846854 Uniprot:Q86K43
Length = 349
Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 69/280 (24%), Positives = 115/280 (41%)
Query: 2 QKSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALH--GFPPEFVKYRNQRLKHN 59
Q+++K K+++ +++ + EE + I D + H G + ++ K
Sbjct: 69 QRNKKEKKIKNDIKKEEE---EEKEEEEEEKVIEDIKIKTHINGISLAKIHWKEVWDKIK 125
Query: 60 MTRDKNSVPLDM---NEYDEGEEESV---LDGLVKTVLSQNTTEANSLKAFASLKSTFPT 113
+ R +N P+D +++ E + LV +LS T +A + A LK T
Sbjct: 126 IMRSENLAPVDTLGAESFNQDNIEPIEKRFHILVGCLLSSQTKDAITHAAVVRLKEYGLT 185
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+ +L + +E + G KA +K I + L K K Y G I E+
Sbjct: 186 VDKMLTIDTNELETLLYPVGFYKRKAIYLKKIAEIL---KNK----Y-NG-DIPPTFKEI 236
Query: 174 SRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK 232
+ GIGPK ++ + + VD H+ IS +GWV T +T L +PK
Sbjct: 237 EQLPGIGPKMTNLIVQIAWGRVEGIAVDVHMHRISNRLGWVKTKTPE-ETMKDLESWLPK 295
Query: 233 ELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKESAGNLCPL 271
E +N LL G+ +C K N NLCP+
Sbjct: 296 ENWATVNHLLVGFGQTICSPVNPKCSNCL----VNNLCPV 331
>TIGR_CMR|CBU_1697 [details] [associations]
symbol:CBU_1697 "endonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0004519
GO:GO:0003906 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 RefSeq:NP_820678.1
ProteinModelPortal:Q83B22 SMR:Q83B22 PRIDE:Q83B22 GeneID:1209608
KEGG:cbu:CBU_1697 PATRIC:17932131 ProtClustDB:CLSK914967
BioCyc:CBUR227377:GJ7S-1668-MONOMER Uniprot:Q83B22
Length = 218
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 56/200 (28%), Positives = 86/200 (43%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L T VLA + ++ I+ GL TKA KNI
Sbjct: 33 LISVMLSAQATDISVNKATKDLYRIANTPAKVLALGESGLKKYIKSIGLYNTKA---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K K+ +E + + EL G+G KT +L + VDTH+F
Sbjct: 90 IKTC-----KILVENYHS-KVPRTREELEALPGVGRKTANVILNTAFGEHAIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
++ G R KT L + ++ +PK+ D + L HG+ CI R+
Sbjct: 144 VANRTGLA-----RGKTPLAVEKKLMEVVPKKYLADAHHWLVLHGRYI--CIA----RRP 192
Query: 262 KESAGNLCPLLNYCEKSNKT 281
K S C + + CE +KT
Sbjct: 193 KCSE---CLINDLCEYPDKT 209
>UNIPROTKB|P0AB83 [details] [associations]
symbol:nth "endonuclease III; specific for apurinic and/or
apyrimidinic sites" species:83333 "Escherichia coli K-12"
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016798 "hydrolase activity, acting on glycosyl bonds"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 GO:GO:0016798 eggNOG:COG0177
EMBL:J02857 PIR:A32412 RefSeq:NP_416150.1 RefSeq:YP_489897.1
PDB:2ABK PDBsum:2ABK ProteinModelPortal:P0AB83 SMR:P0AB83
DIP:DIP-48071N IntAct:P0AB83 MINT:MINT-1223379
EnsemblBacteria:EBESCT00000001176 EnsemblBacteria:EBESCT00000001177
EnsemblBacteria:EBESCT00000015357 GeneID:12933192 GeneID:947122
KEGG:ecj:Y75_p1610 KEGG:eco:b1633 PATRIC:32118568 EchoBASE:EB0656
EcoGene:EG10662 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
ProtClustDB:PRK10702 BioCyc:EcoCyc:EG10662-MONOMER
BioCyc:ECOL316407:JW1625-MONOMER EvolutionaryTrace:P0AB83
Genevestigator:P0AB83 TIGRFAMs:TIGR01083 Uniprot:P0AB83
Length = 211
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 53/195 (27%), Positives = 82/195 (42%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T +L + ++ I+ GL +KA +NI
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKA---ENI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEQHNG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ + P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCIA------RKPRC 194
Query: 266 GNLCPLLNYCEKSNK 280
G+ C + + CE K
Sbjct: 195 GS-CIIEDLCEYKEK 208
>TIGR_CMR|SPO_3581 [details] [associations]
symbol:SPO_3581 "endonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 Pfam:PF10576
PIRSF:PIRSF001435 SMART:SM00278 SMART:SM00478 SMART:SM00525
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_168776.1
ProteinModelPortal:Q5LMI2 SMR:Q5LMI2 GeneID:3196325
KEGG:sil:SPO3581 PATRIC:23380639 ProtClustDB:CLSK934216
Uniprot:Q5LMI2
Length = 214
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 51/196 (26%), Positives = 81/196 (41%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V LS T+A KA L T E +LA ++ + I+ GL KA KN+
Sbjct: 37 VVAVALSAQATDAGVNKATRELFKIADTPEKMLALGEEGVTEHIKTIGLFRQKA---KNV 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ +E G + +A L G+G KT VL + VDTH+F
Sbjct: 94 IKL-----SRILVEQYGG-EVPNSRAALQSLPGVGRKTANVVLNMWWRIPAQAVDTHIFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G P D + + IP + + + L HG+ +C + RK
Sbjct: 148 VGNRTGICP-GKDVDTVERAIEDNIPADFQQHAHHWLILHGRY--HC------KARKPMC 198
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + C+ +KT
Sbjct: 199 GT-CLIRDLCQFEDKT 213
>TAIR|locus:2198738 [details] [associations]
symbol:NTH2 "endonuclease III 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA;ISS;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] [GO:0042644 "chloroplast nucleoid" evidence=IDA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00278
SMART:SM00478 SMART:SM00525 EMBL:CP002684 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0004519
GO:GO:0042644 GO:GO:0019104 KO:K10773 EMBL:AK316958 IPI:IPI00534650
RefSeq:NP_973767.1 UniGene:At.26529 ProteinModelPortal:B9DFZ0
PRIDE:B9DFZ0 EnsemblPlants:AT1G05900.2 GeneID:837100
KEGG:ath:AT1G05900 TAIR:At1g05900 OMA:CGINNIC PhylomeDB:B9DFZ0
Genevestigator:Q3EDI2 Uniprot:B9DFZ0
Length = 386
Score = 122 (48.0 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 63/222 (28%), Positives = 92/222 (41%)
Query: 43 GFPPE-FVKYRN--QRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEAN 99
G PPE + K +++K + N+V D +E L+ T+LS T E
Sbjct: 138 GIPPENWEKVLEGIRKMKPSEEAPVNAVECDRTGSFLPPKERRFYVLIGTLLSSQTKEHI 197
Query: 100 SLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILK-CLLESKGKLC 157
+ A L ++ T E + A++ I+ I G KA +K + K CL+E G
Sbjct: 198 TGAAVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDG--- 254
Query: 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP---VDTHVFEISKAIGWVP 214
I EL G+GPK VL H+ +D VDTHV I +GWV
Sbjct: 255 -------DIPRTLEELLSLPGVGPKIAHLVL--HVAWNDVQGICVDTHVHRICNRLGWVS 305
Query: 215 TAADRNKTY------LHLNQRIPKELKFDLNCLLYTHGK-LC 249
+ KT + L Q +PK +N LL G+ +C
Sbjct: 306 KPGTKQKTSSPEETRVALQQWLPKGEWVAINFLLVGFGQTIC 347
>UNIPROTKB|Q9KT92 [details] [associations]
symbol:VC_1011 "Endonuclease III" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 PIR:A82252 RefSeq:NP_230657.1
ProteinModelPortal:Q9KT92 SMR:Q9KT92 DNASU:2614264 GeneID:2614264
KEGG:vch:VC1011 PATRIC:20081122 ProtClustDB:CLSK874181
Uniprot:Q9KT92
Length = 213
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + T + +L ++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATDKLYAVANTPQTMLDLGVDGVKEYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE +G + E + L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEKHQG-EVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S + + ++ L + +P E K D++ L HG+ C+ RK
Sbjct: 144 VSNRTKFA-VGKNVDEVEHKLLKVVPNEFKLDVHHWLILHGRY--TCVA------RKPRC 194
Query: 266 GNLCPLLNYCEKSNK 280
G+ C + + CE +K
Sbjct: 195 GS-CIIEDLCEFKDK 208
>TIGR_CMR|VC_1011 [details] [associations]
symbol:VC_1011 "endonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 PIR:A82252 RefSeq:NP_230657.1
ProteinModelPortal:Q9KT92 SMR:Q9KT92 DNASU:2614264 GeneID:2614264
KEGG:vch:VC1011 PATRIC:20081122 ProtClustDB:CLSK874181
Uniprot:Q9KT92
Length = 213
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + T + +L ++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATDKLYAVANTPQTMLDLGVDGVKEYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE +G + E + L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEKHQG-EVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S + + ++ L + +P E K D++ L HG+ C+ RK
Sbjct: 144 VSNRTKFA-VGKNVDEVEHKLLKVVPNEFKLDVHHWLILHGRY--TCVA------RKPRC 194
Query: 266 GNLCPLLNYCEKSNK 280
G+ C + + CE +K
Sbjct: 195 GS-CIIEDLCEFKDK 208
>TAIR|locus:2061345 [details] [associations]
symbol:ATNTH1 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA;ISS;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] [GO:0042644 "chloroplast nucleoid" evidence=IDA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764
PROSITE:PS01155 SMART:SM00278 SMART:SM00478 SMART:SM00525
EMBL:CP002685 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
EMBL:AC007169 GO:GO:0004519 GO:GO:0042644 GO:GO:0019104 KO:K10773
IPI:IPI00540590 PIR:H84720 RefSeq:NP_565725.1 UniGene:At.10180
HSSP:P20625 ProteinModelPortal:Q9SIC4 SMR:Q9SIC4 STRING:Q9SIC4
PRIDE:Q9SIC4 EnsemblPlants:AT2G31450.1 GeneID:817703
KEGG:ath:AT2G31450 TAIR:At2g31450 InParanoid:Q9SIC4 OMA:DIEDFAY
PhylomeDB:Q9SIC4 ProtClustDB:CLSN2688602 Genevestigator:Q9SIC4
Uniprot:Q9SIC4
Length = 379
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 68/245 (27%), Positives = 104/245 (42%)
Query: 43 GFPPE-FVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEE-----ESVLDGLVKTVLSQNTT 96
G+PPE +V+ + ++ R P+D D+ E L+ +LS T
Sbjct: 131 GYPPENWVEVL-EGIRQ--MRSSEDAPVDSMGCDKAGSFLPPTERRFAVLLGALLSSQTK 187
Query: 97 EANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILK-CLLESKG 154
+ + A L ++ T E V A++ I+ I G KA +K I + CL++ G
Sbjct: 188 DQVNNAAIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARICLVKYDG 247
Query: 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP---VDTHVFEISKAIG 211
+ S+D++ LS GIGPK +L H+ +D VDTHV I +G
Sbjct: 248 DI------PSSLDDL---LS-LPGIGPKMAHLIL--HIAWNDVQGICVDTHVHRICNRLG 295
Query: 212 WVPTAADRNKTY------LHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
WV + KT + L Q +PKE +N LL G++ I+ R S
Sbjct: 296 WVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPIRP---RCEACSV 352
Query: 266 GNLCP 270
LCP
Sbjct: 353 SKLCP 357
>TIGR_CMR|GSU_1450 [details] [associations]
symbol:GSU_1450 "endonuclease III, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004519 GO:GO:0016798 KO:K10773
HOGENOM:HOG000252209 RefSeq:NP_952501.2 GeneID:2687781
KEGG:gsu:GSU1450 PATRIC:22025743 ProtClustDB:CLSK2306769
BioCyc:GSUL243231:GH27-1429-MONOMER Uniprot:Q74D69
Length = 218
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 48/162 (29%), Positives = 69/162 (42%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T + + A L + T ++ + IE AI G TKA I I
Sbjct: 39 LVSCILSLRTQDRTTGPASERLFALADTPAAMVRLSKDDIEKAIYPVGFYHTKAEQILEI 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE Y G+ DE+ EL F+G+G KT V+ + VDTHV
Sbjct: 99 CRVLLE-------RYDGGVP-DELD-ELLAFKGVGRKTANLVITLGFGKPGICVDTHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I G++ T +T L + +P +N L T G+
Sbjct: 150 ICNRWGYIRTKTPE-QTEFSLRRILPHRYWLVINDYLVTFGQ 190
>TIGR_CMR|BA_1570 [details] [associations]
symbol:BA_1570 "endonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0000703 "oxidized pyrimidine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004036
InterPro:IPR005759 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
Pfam:PF10576 PIRSF:PIRSF001435 PROSITE:PS01155 SMART:SM00278
SMART:SM00478 SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0051539 GO:GO:0005622 GO:GO:0004519 GO:GO:0003906 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 HOGENOM:HOG000252208 HSSP:P20625
RefSeq:NP_844020.1 RefSeq:YP_018193.1 RefSeq:YP_027725.1
ProteinModelPortal:Q81SS5 SMR:Q81SS5 DNASU:1083694
EnsemblBacteria:EBBACT00000010838 EnsemblBacteria:EBBACT00000014468
EnsemblBacteria:EBBACT00000019730 GeneID:1083694 GeneID:2815568
GeneID:2851771 KEGG:ban:BA_1570 KEGG:bar:GBAA_1570 KEGG:bat:BAS1456
ProtClustDB:CLSK2521133 BioCyc:BANT260799:GJAJ-1530-MONOMER
BioCyc:BANT261594:GJ7F-1594-MONOMER Uniprot:Q81SS5
Length = 215
Score = 107 (42.7 bits), Expect = 0.00095, P = 0.00094
Identities = 57/229 (24%), Positives = 96/229 (41%)
Query: 59 NMTRDKNSVPLDMNEYDEGEEESVLDG----LVKTVLSQNTTEANSLKAFASLKSTFPTW 114
N T+ + + + Y E E + D ++ LS T+A K +L + T
Sbjct: 3 NKTQIRYCLDTMADMYPEAHCELIHDNPFELVIAVALSAQCTDALVNKVTKNLFQKYKTP 62
Query: 115 EHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELS 174
E L+ + ++ IR GL KA I+ + + LL+ +Y G + + + EL+
Sbjct: 63 EDYLSVSLEELQQDIRSIGLYRNKAKNIQKLCRMLLD-------DY-NG-EVPKDRDELT 113
Query: 175 RFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG---WVPTAADRNKTYLHLNQRIP 231
+ G+G KT V+ VDTHV +SK + W + + KT L ++IP
Sbjct: 114 KLPGVGRKTANVVVSVAFGIPAIAVDTHVERVSKRLAICRWKDSVLEVEKT---LMKKIP 170
Query: 232 KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
+ + + G+ +C K Q +E CPLL C + K
Sbjct: 171 MDEWSVTHHRMIFFGRY--HC--KAQRPQCEE-----CPLLEVCREGKK 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 281 281 0.00083 115 3 11 22 0.37 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 602 (64 KB)
Total size of DFA: 215 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.64u 0.09s 23.73t Elapsed: 00:00:02
Total cpu time: 23.64u 0.09s 23.73t Elapsed: 00:00:02
Start: Fri May 10 04:08:50 2013 End: Fri May 10 04:08:52 2013